pypi: Biology | Projects | Ecosyste.ms: Papers

10.1007/s11192-017-2364-4

Identification of successful mentoring communities using network-based analysis of mentor–mentee relationships across Nobel laureates
Cited by: 22
Author(s): Julia H. Chariker, Yihang Zhang, John R. Pani, Eric C. Rouchka
Software Mentions: 2
Published: over 7 years ago

10.4056/sigs.2034671

Meeting report from the first meetings of the Computational Modeling in Biology Network (COMBINE)
Cited by: 7
Author(s): Nicolas Le Novère, Michael Hucka, Nadia Anwar, Gary D. Bader, Emek Demir, Stuart Moodie, Anatoly Sorokin
Software Mentions: 2
Published: almost 13 years ago

10.3390/toxins10010008

Computational Studies of Snake Venom Toxins
Cited by: 18
Author(s): Paola G. Ojeda, David Ramírez, Jans Alzate‐Morales, Julio Caballero, Quentin Kaas, Wendy González
Software Mentions: 2
Published: almost 7 years ago

10.1098/rsob.190258

Myriapod haemocyanin: the first three-dimensional reconstruction of Scolopendra subspinipes and preliminary structural analysis of S. viridicornis
Cited by: 1
Author(s): Katie Cristina Takeuti Riciluca, Antônio Carlos Borges, J. F. R. Mello, Úrsula Castro de Oliveira, D. C. Serdan, A. Florez-Ariza, Elisa Chaparro, Milton Yutaka Nishiyama, Alexandre Cassago, Inácio L.M. Junqueira-de-Azevedo, Marin van Heel, P. I. Silva, Rodrigo Villares Portugal
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0144326

Introduction to the Rosetta Special Collection
Cited by: 3
Author(s): Sagar D. Khare, Timothy A. Whitehead
Software Mentions: 1
Published: almost 9 years ago

10.1186/1471-2164-8-404

Vascular microarray profiling in two models of hypertension identifies caveolin-1, Rgs2 and Rgs5 as antihypertensive targets
Cited by: 32
Author(s): T. Hilton Grayson, Stephen Ohms, Therese D. Brackenbury, Kate R Meaney, Kaiman Peng, Yvonne Pittelkow, Susan R. Wilson, Shaun L. Sandow, Caryl E. Hill
Software Mentions: 1
Published: about 17 years ago

10.1242/bio.031443

Correction: The constant threat from a non-native predator increases tail muscle and fast-start swimming performance in Xenopus tadpoles
Cited by: 2
Author(s): Tsukasa Mori, Yukio Yanagisawa, Yoichiro Kitani, Goshi Yamamoto, Naoko Goto‐Inoue, Tadashi Kimura, Kazuhiro Kashiwagi, Akihiko Kashiwagi
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pcbi.1004098

How to Write a Presubmission Inquiry
Cited by: 2
Author(s): Thomas Lengauer, Ruth Nussinov
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0181742

Automatic jargon identifier for scientists engaging with the public and science communication educators
Cited by: 72
Author(s): Tzipora Rakedzon, Elad Segev, Noam Chapnik, Roy Yosef, Ayelet Baram‐Tsabari
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2164-16-S12-I1

GIW and InCoB, two premier bioinformatics conferences in Asia with a combined 40 years of history
Cited by: 0
Author(s): Christian Schönbach, Paul Horton, Siu Ming Yiu, Tin Wee Tan, Shoba Ranganathan
Software Mentions: 1
Published: almost 9 years ago

10.1242/bio.057356

Future Leaders to Watch – Andrea Paterlini
Cited by: 0
Author(s):
Software Mentions: 1
Published: about 4 years ago

10.1186/s13062-014-0025-6

Microbes on the edge of Occam’s razor
Cited by: 1
Author(s): Petro Starokadomskyy
Software Mentions: 1
Published: almost 10 years ago

10.3390/cells2020414

Systems Biology — the Broader Perspective
Cited by: 8
Author(s): Jonathan Bard
Software Mentions: 1
Published: over 11 years ago

10.1186/s12014-020-09275-w

A comprehensive analysis of sialolith proteins and the clinical implications
Cited by: 6
Author(s): Carlos S. Busso, Jessie Guidry, Jhanis González, Vassilia Zorba, Leslie Son, Peter J. Winsauer, Rohan R. Walvekar
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pcbi.1006885

PLOS Computational Biology 2018 Reviewer and Editorial Board Thank You
Cited by: 0
Author(s):
Software Mentions: 1
Published: over 5 years ago

10.1186/s13062-015-0050-0

Sequence analysis reveals a conserved extension in the capping enzyme of the alphavirus supergroup, and a homologous domain in nodaviruses
Cited by: 75
Author(s): Tero Ahola, David Karlin
Software Mentions: 1
Published: over 9 years ago

10.1007/s00450-013-0251-7

Quantitative reactive modeling and verification
Cited by: 32
Author(s): Thomas A. Henzinger
Software Mentions: 1
Published: about 11 years ago

10.1186/1745-6150-7-31

Evasion of tumours from the control of the immune system: consequences of brief encounters
Cited by: 48
Author(s): Mohannad Musa Eisa Al-Tameemi, M. A. J. Chaplain, Alberto d’Onofrio
Software Mentions: 1
Published: about 12 years ago

10.1186/1745-6150-9-24

Minimization of extracellular space as a driving force in prokaryote association and the origin of eukaryotes
Cited by: 4
Author(s): Scott L. Hooper, Helaine J Burstein
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2148-12-19

The diversity and evolution of chelicerate hemocyanins
Cited by: 44
Author(s): Peter Rehm, Christian Pick, Janus Borner, Jürgen Markl, Thorsten Burmester
Software Mentions: 1
Published: almost 13 years ago

10.1186/1745-6150-4-45

In plants, expression breadth and expression level distinctly and non-linearly correlate with gene structure
Cited by: 30
Author(s): Hangxing Yang
Software Mentions: 1
Published: almost 16 years ago

10.1093/database/bay133

Combining relation extraction with function detection for BEL statement extraction
Cited by: 2
Author(s): Suwen Liu, Wei Cheng, Longhua Qian, Guodong Zhou
Software Mentions: 1
Published: almost 6 years ago

10.1093/database/bav030

Causal biological network database: a comprehensive platform of causal biological network models focused on the pulmonary and vascular systems
Cited by: 82
Author(s): Stéphanie Boué, Marja Talikka, Jurjen W. Westra, William Hayes, Anselmo Di Fabio, Jennifer Park, Walter K. Schlage, Alain Sewer, Brett Fields, Sam Ansari, Florian Martin, Emilija Veljkovic, Renée Deehan Kenney, Manuel C. Peitsch, Julia Hoeng
Software Mentions: 1
Published: almost 10 years ago

10.3390/ijms12052917

A Newly Isolated Thermostable Lipase from Bacillus sp.
Cited by: 47
Author(s): Fairolniza Mohd Shariff, Raja Noor Zaliha Raja Abdul Rahman, Mahiran Basri, Abu Bakar Salleh
Software Mentions: 1
Published: over 13 years ago

10.1289/ehp.1103437

Benzene Metabolite 1,2,4-Benzenetriol Induces Halogenated DNA and Tyrosines Representing Halogenative Stress in the HL-60 Human Myeloid Cell Line
Cited by: 17
Author(s): Takuro Nishikawa, Emiko Miyahara, Masahisa Horiuchi, Kimiko Izumo, Yasuhiro Okamoto, Yoshichika Kawai, Yoshifumi Kawano, Tōru Takeuchi
Software Mentions: 1
Published: almost 13 years ago

10.1155/2016/1587652

The Significance of an Enhanced Concept of the Organism for Medicine
Cited by: 3
Author(s): Bernd Rosslenbroich
Software Mentions: 1
Published: almost 9 years ago

10.12688/f1000research.20135.2

Isolation and initial propagation of guinea pig adenovirus (GPAdV) in Cavia porcellus cell lines
Cited by: 1
Author(s): Adriana E. Kajon, Xiaoxin Li, Gabriel González, Susan B. Core, Helga Hofmann-Sieber, Shuguang Leng
Software Mentions: 1
Published: over 4 years ago

10.3389/fbioe.2016.00095

Toward Multiscale Models of Cyanobacterial Growth: A Modular Approach
Cited by: 20
Author(s): Stefanie Westermark, Ralf Steuer
Software Mentions: 1
Published: almost 8 years ago

10.3389/fimmu.2018.01798

Synergistic Antimyeloma Activity of Dendritic Cells and Pomalidomide in a Murine Myeloma Model
Cited by: 16
Author(s): Manh-Cuong Vo, Seoyun Yang, Sung‐Hoon Jung, Tan-Huy Chu, Hyunju Lee, Thangaraj Jaya Lakshmi, Hye-Seong Park, Hyeoung-Joon Kim, Je‐Jung Lee
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2021.692569

Proteomic and Biological Analysis of an In Vitro Human Endothelial System in Response to Drug Anaphylaxis
Cited by: 4
Author(s): Alma Yuste-Montalvo, Sergio Fernández-Bravo, Tamara Oliva, Carlos Pastor-Vargas, Diana Betancor, María José Goikoetxea, José Julio Laguna, Juan Antonio López, Gloria Álvarez-Llamas, Javier Cuesta‐Herranz, Marta Martin‐Lorenzo, Vanesa Esteban
Software Mentions: 1
Published: over 3 years ago

10.1128/AAC.00379-17

Screening the Medicines for Malaria Venture Pathogen Box across Multiple Pathogens Reclassifies Starting Points for Open-Source Drug Discovery
Cited by: 98
Author(s): Sandra Duffy, Melissa Sykes, Amy J. Jones, Todd Shelper, Moana Simpson, Rebecca Lang, Sally‐Ann Poulsen, Brad E. Sleebs, Vicky M. Avery
Software Mentions: 1
Published: about 7 years ago

10.1186/1745-6150-1-6

Mathematical modeling of tumor therapy with oncolytic viruses: Regimes with complete tumor elimination within the framework of deterministic models
Cited by: 89
Author(s): Artem S. Novozhilov, Faina S. Berezovskaya, Eugene V. Koonin, Georgy P. Karev
Software Mentions: 1
Published: almost 19 years ago

10.1186/1745-6150-4-33

The fundamental units, processes and patterns of evolution, and the Tree of Life conundrum
Cited by: 54
Author(s): Eugene V. Koonin, Yuri I. Wolf
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pcbi.1005290

Computing the Dynamic Supramolecular Structural Proteome
Cited by: 3
Author(s): Ruth Nussinov, Jason A. Papin, Ilya A. Vakser
Software Mentions: 1
Published: almost 8 years ago

10.1186/1745-6150-5-2

Elastic, not plastic species: Frozen plasticity theory and the origin of adaptive evolution in sexually reproducing organisms
Cited by: 31
Author(s): Jaroslav Flegr
Software Mentions: 1
Published: almost 15 years ago

10.3389/fmicb.2020.590522

Combating Antimicrobial Resistance With New-To-Nature Lanthipeptides Created by Genetic Code Expansion
Cited by: 12
Author(s): Hamid Reza Karbalaei‐Heidari, Nediljko Budiša
Software Mentions: 1
Published: about 4 years ago

10.1186/1471-2105-14-17

CySBGN: A Cytoscape plug-in to integrate SBGN maps
Cited by: 22
Author(s): Emanuel Gonçalvès, Martijn P. van Iersel, Julio Sáez-Rodríguez
Software Mentions: 1
Published: almost 12 years ago

10.18632/oncotarget.7295

First in-depth analysis of the novel Th2-type cytokines in salmonid fish reveals distinct patterns of expression and modulation but overlapping bioactivities
Cited by: 87
Author(s): Tiehui Wang, Petronella Johansson, Beatriz Abós, Amy Holt, Carolina Tafalla, Youshen Jiang, Alex Wang, Qiaoqing Xu, Zhitao Qi, Wei‐Jan Huang, María M. Costa, Patricia Díaz‐Rosales, Jeremy Holland, Christopher J. Secombes
Software Mentions: 1
Published: almost 9 years ago

10.1590/1678-4685-GMB-2016-0041

Genome-wide identification, classification and transcriptional analysis of nitrate and ammonium transporters in Coffea
Cited by: 10
Author(s): Tiago Benedito dos Santos, J. D. Lima, Mariane Silva Felicio, João Danillo Moura Soares, Douglas Silva Domingues
Software Mentions: 1
Published: over 7 years ago

10.1186/1745-6150-4-23

Divergent evolution and purifying selection of the flaA gene sequences in Aeromonas
Cited by: 8
Author(s): Maribel Farfán, David Miñana-Galbis, M. Carmen Fusté, J. Gaspar Lorén
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pcbi.1004318

From “What Is?” to “What Isn't?” Computational Biology
Cited by: 4
Author(s): Ruth Nussinov, Sebastian Bonhoeffer, Jason A. Papin, Olaf Sporns
Software Mentions: 1
Published: over 9 years ago

10.1186/2041-1480-2-S4-I1

OBML – Ontologies in Biomedicine and Life Sciences
Cited by: 3
Author(s): Heinrich Herre, Robert Hoehndorf, Janet Kelso, Frank Loebe, Stefan Schulz
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pcbi.1004966

Allostery: An Overview of Its History, Concepts, Methods, and Applications
Cited by: 179
Author(s): Jin Liu, Ruth Nussinov
Software Mentions: 1
Published: over 8 years ago

10.1186/1745-6150-3-7

Homoplasy in genome-wide analysis of rare amino acid replacements: the molecular-evolutionary basis for Vavilov's law of homologous series
Cited by: 43
Author(s): Igor B. Rogozin, Karen Thomson, Miklós Csűrös, Liran Carmel, Eugene V. Koonin
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pcbi.1000094

ISMB 2008 Toronto
Cited by: 0
Author(s): Michal Linial, Jill P. Mesirov, Becky McKay, Burkhard Rost
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pcbi.1004317

Ten Years of PLoS‡ Computational Biology: A Decade of Appreciation and Innovation
Cited by: 1
Author(s): Philip E. Bourne, Steven E. Brenner, Michael B. Eisen
Software Mentions: 1
Published: over 9 years ago

10.1186/s13321-017-0201-7

Modeling framework for isotopic labeling of heteronuclear moieties
Cited by: 2
Author(s): Mark Borkum, Patrick N. Reardon, Ronald C. Taylor, Nancy G. Isern
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2105-8-103

Modeling biochemical transformation processes and information processing with Narrator
Cited by: 9
Author(s): Johannes Mandel, Hendrik Fuß, Niall Palfreyman, Werner Dubitzky
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pcbi.1004323

Computational Biology: Moving into the Future One Click at a Time
Cited by: 1
Author(s): Christiana N. Fogg, Diane E. Kovats
Software Mentions: 1
Published: over 9 years ago

10.1093/jxb/erx482

Increases in activity of proteasome and papain-like cysteine protease in Arabidopsis autophagy mutants: back-up compensatory effect or cell-death promoting effect?
Cited by: 47
Author(s): Marien Havé, Thierry Balliau, Betty Cottyn‐Boitte, Emeline Dérond, Gwendal Cueff, Fabienne Soulay, Aurélia Lornac, Pavel Reichman, Nico Dißmeyer, J. C. Avice, Patrick Gallois, Loïc Rajjou, Michel Zivy, Céline Masclaux-Daubresse
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pcbi.1005043

Genome Landscapes of Disease: Strategies to Predict the Phenotypic Consequences of Human Germline and Somatic Variation
Cited by: 6
Author(s): Rachel Karchin, Ruth Nussinov
Software Mentions: 1
Published: over 8 years ago

10.1186/s13062-017-0202-5

Inevitability of the emergence and persistence of genetic parasites caused by evolutionary instability of parasite-free states
Cited by: 58
Author(s): Eugene V. Koonin, Yuri I. Wolf, M. I. Katsnelson
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pcbi.1007868

Ten simple rules for designing learning experiences that involve enhancing computational biology Wikipedia articles
Cited by: 6
Author(s): Alastair M. Kilpatrick, Audra Anjum, Lonnie R. Welch
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pcbi.1002598

A Quick Guide to Software Licensing for the Scientist-Programmer
Cited by: 62
Author(s): Andrew Morin, Jennifer M. Urban, Piotr Sliz
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pcbi.1004085

PathVisio 3: An Extendable Pathway Analysis Toolbox
Cited by: 324
Author(s): Martina Kutmon, Martijn P. van Iersel, Anwesha Bohler, Thomas Kelder, Nuno Nunes, Alexander R. Pico, Chris T. Evelo
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pcbi.1003858

Ten Simple Rules for Writing a PLOS Ten Simple Rules Article
Cited by: 14
Author(s): Harriet Dashnow, Andrew Lonsdale, Philip E. Bourne
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pcbi.1003390

Moving Education Forward, Again!
Cited by: 1
Author(s): Fran Lewitter
Software Mentions: 1
Published: almost 11 years ago

10.1186/1745-6150-8-11

Biology Direct:celebrating 7 years of open, published peer review
Cited by: 6
Author(s): Eugene V. Koonin, Laura F. Landweber, David J. Lipman
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pcbi.1000275

A Review of 2008 for PLoS Computational Biology
Cited by: 0
Author(s): Evie Browne, Rosemary Dickin, Philip E. Bourne
Software Mentions: 1
Published: almost 16 years ago

10.1186/1745-6150-1-1

Cited by: 78
Author(s): Eugene V. Koonin, Laura F. Landweber, David J. Lipman
Software Mentions: 1
Published: almost 19 years ago

10.1186/1745-6150-6-18

Functional analysis of archaeal MBF1 by complementation studies in yeast
Cited by: 9
Author(s): Jeannette Marrero Coto, Ann E. Ehrenhofer‐Murray, Tirso Pons, Bettina Siebers
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pcbi.1000809

The Roots of Bioinformatics
Cited by: 28
Author(s): David B. Searls
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pcbi.1005115

M-Track: A New Software for Automated Detection of Grooming Trajectories in Mice
Cited by: 22
Author(s): Sheldon L. Reeves, Kelsey E. Fleming, Lin Zhang, Annalisa Scimemi
Software Mentions: 1
Published: about 8 years ago

10.1186/1745-6150-4-1

Genomic analysis of an emerging multiresistant Staphylococcus aureus strain rapidly spreading in cystic fibrosis patients revealed the presence of an antibiotic inducible bacteriophage
Cited by: 79
Author(s): Jean‐Marc Rolain, Patrice François, David Hernández, Fadi Bittar, Hervé Richet, Ghislain Fournous, Yves Benoît Mattenberger, E. Bosdure, Nathalie Stremler, Jean‐Christophe Dubus, J. Sarles, Martine Reynaud‐Gaubert, S. Boniface, Jacques Schrenzel, Didier Raoult
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pcbi.1007032

Wisdom of crowds in computational biology
Cited by: 2
Author(s): Jason A. Papin, Feilim Mac Gabhann
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1009238

Ten simple rules for conducting a mendelian randomization study
Cited by: 26
Author(s): Sarah A. Gagliano Taliun, David M. Evans
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pcbi.0010005

An Open Forum for Computational Biology
Cited by: 4
Author(s): Michael Gribskov
Software Mentions: 1
Published: over 19 years ago

10.1038/srep35331

Correction: Corrigendum: Recombination spot identification Based on gapped k-mers
Cited by: 2
Author(s): Rong Wang, Yong Xu, Bin Liu
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pcbi.1002727

A Future Vision for PLOS Computational Biology
Cited by: 0
Author(s): Ruth Nussinov
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pcbi.1003880

FamSeq: A Variant Calling Program for Family-Based Sequencing Data Using Graphics Processing Units
Cited by: 14
Author(s): Gang Peng, Yu Fan, Wei Lien Wang
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pcbi.1002387

A Review of 2011 for PLoS Computational Biology
Cited by: 0
Author(s): Rosemary Dickin, Chris James Hall, Laura K. Taylor, Andy Collings, Ruth Nussinov, Philip E. Bourne
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pcbi.1003270

CAPE: An R Package for Combined Analysis of Pleiotropy and Epistasis
Cited by: 26
Author(s): Anna L. Tyler, Wei Lü, Justin Hendrick, Vivek M. Philip, Gregory W. Carter
Software Mentions: 1
Published: about 11 years ago

10.1093/bioinformatics/btab383

ISCB Honors 2021 Award Recipients Peer Bork, Barbara Engelhardt, Ben Raphael, Teresa Attwood
Cited by: 1
Author(s): Christiana N. Fogg, Diane E. Kovats, Martin Vingron
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-017-17029-2

Utilization of blood by-products: An in silico and experimental combined study for BSA usage
Cited by: 5
Author(s): Fátima Arrutia, Rebeca Fernandez Fernandez, Carlos Menéndez, Ulises González, Francisco A. Riera
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pcbi.0020007

Welcome to PLoS Computational Biology “Education”
Cited by: 5
Author(s): Fran Lewitter
Software Mentions: 1
Published: almost 19 years ago

10.1371/journal.pcbi.1005518

ESPRIT-Forest: Parallel clustering of massive amplicon sequence data in subquadratic time
Cited by: 15
Author(s): Yunpeng Cai, Wei Zheng, Jin Yao, Yujie Yang, Volker Mai, Qi Mao, Yijun Sun
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pcbi.1003841

NESmapper: Accurate Prediction of Leucine-Rich Nuclear Export Signals Using Activity-Based Profiles
Cited by: 35
Author(s): Shunichi Kosugi, Hiroshi Yanagawa, Ryohei Terauchi, Satoshi Tabata
Software Mentions: 1
Published: about 10 years ago

10.1038/s41598-019-42564-5

HMGB1 is a Central Driver of Dynamic Pro-inflammatory Networks in Pediatric Acute Liver Failure induced by Acetaminophen
Cited by: 14
Author(s): Rubén Zamora, Derek Barclay, Jinling Yin, Estella M. Alonso, Mike A. Leonis, Qi Mi, Timothy R. Billiar, Richard L. Simmons, Robert H. Squires, Yoram Vodovotz
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1004174

Comment on “Broadband Criticality of Human Brain Network Synchronization” by Kitzbichler MG, Smith ML, Christensen SR, Bullmore E (2009) PLoS Comput Biol 5: e1000314
Cited by: 5
Author(s): Simon F. Farmer
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pcbi.1004053

Advancements and Challenges in Computational Biology
Cited by: 14
Author(s): Ruth Nussinov
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pcbi.1004175

Power Law Scaling in Human and Empty Room MEG Recordings
Cited by: 5
Author(s): Manfred G. Kitzbichler, Edward T. Bullmore
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pcbi.1002921

Standard Anatomical and Visual Space for the Mouse Retina: Computational Reconstruction and Transformation of Flattened Retinae with the Retistruct Package
Cited by: 76
Author(s): David C. Sterratt, Daniel Lyngholm, David Willshaw, Ian D. Thompson
Software Mentions: 1
Published: over 11 years ago

10.18632/oncotarget.15917

Combination therapy with dendritic cells and lenalidomide is an effective approach to enhance antitumor immunity in a mouse colon cancer model
Cited by: 29
Author(s): Manh-Cuong Vo, Thanh-Nhan Nguyen-Pham, Hyunju Lee, Thangaraj Jaya Lakshmi, Seoyun Yang, Sung‐Hoon Jung, Hyeoung-Joon Kim, Je‐Jung Lee
Software Mentions: 1
Published: over 7 years ago

10.1186/1752-0509-2-39

SBMLsqueezer: A CellDesigner plug-in to generate kinetic rate equations for biochemical networks
Cited by: 68
Author(s): Andreas Dräger, Nadine Hassis, Jochen Supper, Adrian Schröder, Andreas Zell
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pbio.1002206

Let's Make Gender Diversity in Data Science a Priority Right from the Start
Cited by: 11
Author(s): Francine Berman, Philip E. Bourne
Software Mentions: 1
Published: over 9 years ago

10.1098/rsob.120027

Open Biology's first few months
Cited by: 0
Author(s): David M. Glover
Software Mentions: 1
Published: almost 13 years ago

10.1111/j.1538-7836.2006.02008.x

Open access: the view of the Public Library of Science
Cited by: 6
Author(s): Virginia Barbour, Mark Patterson
Software Mentions: 1
Published: over 18 years ago

10.1371/journal.pcbi.0010004

PLoS Computational Biology: A New Community Journal
Cited by: 6
Author(s): Philip E. Bourne, Steven E. Brenner, Michael B. Eisen
Software Mentions: 1
Published: almost 20 years ago

10.1515/jib-2020-0018

Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1
Cited by: 7
Author(s): Lucian P. Smith, Stuart Moodie, Frank Bergmann, Colin S. Gillespie, Sarah M. Keating, Matthias König, Chris J. Myers, Maciej Swat, Darren J. Wilkinson, Michael Hucka
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pbio.2002885

Perceived effort for motor control and decision-making
Cited by: 14
Author(s): Ignasi Cos
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pcbi.1008867

Collaborating with our community to increase code sharing
Cited by: 12
Author(s): Lauren Cadwallader, Jason A. Papin, Feilim Mac Gabhann, Rebecca Kirk
Software Mentions: 1
Published: over 3 years ago

10.15252/msb.20198955

Disentangling molecular mechanisms regulating sensitization of interferon alpha signal transduction
Cited by: 34
Author(s): Frédérique Kok, Marcus Rosenblatt, Melissa Teusel, Tamar Nizharadze, Vladimir Gonçalves Magalhães, Christopher Dächert, Thomas Maiwald, Artyom Vlasov, Marvin Wäsch, Silvana Tyufekchieva, Katrin Hoffmann, Georg Damm, Daniel Seehofer, Tobias Böettler, Marco Binder, Jens Timmer, Marcel Schilling, Ursula Klingmüller
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pcbi.1003440

PredictSNP: Robust and Accurate Consensus Classifier for Prediction of Disease-Related Mutations
Cited by: 542
Author(s): Jaroslav Bendl, Jan Štourač, Ondrej Salanda, Antonín Pavelka, Eric D. Wieben, Jaroslav Zendulka, Jan Brezovský, Jiřı́ Damborský
Software Mentions: 1
Published: almost 11 years ago

10.1038/s41380-018-0056-y

The ASD Living Biology: from cell proliferation to clinical phenotype
Cited by: 201
Author(s): Eric Courchesne, Tiziano Pramparo, Vahid H. Gazestani, Michael Lombardo, Karen Pierce, Nathan E. Lewis
Software Mentions: 1
Published: over 6 years ago

10.3390/metabo2030429

Current Understanding of the Formation and Adaptation of Metabolic Systems Based on Network Theory
Cited by: 13
Author(s): Kazuhiro Takemoto
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pcbi.1003332

About Dice, Bouldering, and Team Empowerment: Running the CompOmics Group at VIB and Ghent University, Belgium
Cited by: 0
Author(s): Lennart Martens
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pcbi.1004585

Computational Methods for Exploration and Analysis of Macromolecular Structure and Dynamics
Cited by: 14
Author(s): Amarda Shehu, Ruth Nussinov
Software Mentions: 1
Published: about 9 years ago

10.1093/bfgp/elu015

Event-based text mining for biology and functional genomics
Cited by: 60
Author(s): Sophia Ananiadou, Paul Thompson, Raheel Nawaz, John McNaught, Douglas B. Kell
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pgen.1000441

Conserved Alternative Splicing and Expression Patterns of Arthropod N-Cadherin
Cited by: 17
Author(s): Shu Ning Hsu, Shinichi Yonekura, Chun-Yuan Ting, Hugh M. Robertson, Yoshio Iwai, Tadashi Uemura, Chi-Hon Lee, Akira Chiba
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pmed.1001870

Point-of-Care Information in Open Access: A Time to Sow?
Cited by: 0
Author(s):
Software Mentions: 1
Published: about 9 years ago

Projects: pypi: Biology

Papers Mentioning Biology 311