Ecosyste.ms: Papers

10.1186/s13062-016-0171-0

Expansion of the molecular and morphological diversity of Acanthamoebidae (Centramoebida, Amoebozoa) and identification of a novel life cycle type within the group
Cited by: 54
Author(s): Alexander K. Tice, Lora L. Shadwick, Anna Maria Fiore-Donno, Stefan Geisen, Seungho Kang, Gabriel A. Schuler, Frederick W. Spiegel, Katherine Wilkinson, Michael Bonkowski, Kenneth Dumack, Daniel J. G. Lahr, Eckhard Voelcker, Steffen Clauß, Junling Zhang, Matthew W. Brown
Software Mentions: 2
Published: almost 8 years ago

10.1186/s13062-018-0206-9

Prevalence of loss-of-function alleles does not correlate with lifetime fecundity and other life-history traits in metazoans
Cited by: 0
Author(s): Aleksandra V. Bezmenova, Georgii A. Bazykin, Alexey S. Kondrashov
Software Mentions: 2
Published: over 6 years ago

10.1016/j.biopsych.2019.04.034

Novel Insight Into the Etiology of Autism Spectrum Disorder Gained by Integrating Expression Data With Genome-wide Association Statistics
Cited by: 59
Author(s): Oliver Pain, Andrew Pocklington, Peter Holmans, Nicholas John Bray, Heath O’Brien, Lynsey S. Hall, Antonio F. Pardiñas, Michael O’Donovan, Richard Anney
Software Mentions: 2
Published: over 5 years ago

10.1093/bib/bby024

Community-driven roadmap for integrated disease maps
Cited by: 44
Author(s): Marek Ostaszewski, Stephan Gebel, Inna Kuperstein, Alexander Mazein, Andrei Zinovyev, Uḡur Doḡrusöz, Jan Hasenauer, Ronan M. T. Fleming, Nicolas Le Novère, Piotr Gawron, Thomas Ligon, Anna Niarakis, David Nickerson, Daniel Weindl, Rudi Balling, Emmanuel Barillot, Charles Auffray, Reinhard Schneider
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pcbi.1007957

Learning receptive field properties of complex cells in V1
Cited by: 5
Author(s): Yanbo Lian, Ali Almasi, David B. Grayden, Tatiana Kameneva, Anthony N. Burkitt, Hamish Meffin
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1009259

Bistability in fatty-acid oxidation resulting from substrate inhibition
Cited by: 4
Author(s): Fentaw Abegaz, Anne-Claire M. F. Martines, Marcel A. Vieira-Lara, Melany Ríos-Morales, Dirk-Jan Reijngoud, Ernst Wit, Barbara M. Bakker
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1008961

Modeling historic incidence trends implies early field cancerization in esophageal squamous cell carcinoma
Cited by: 2
Author(s): E. Georg Luebeck, Thomas L. Vaughan, Kit Curtius, William D. Hazelton
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1009012

A model of naturalistic decision making in preference tests
Cited by: 4
Author(s): John Ksander, Donald B Katz, Paul Miller
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pcbi.1008884

Critical behaviour of the stochastic Wilson-Cowan model
Cited by: 13
Author(s): A. de Candia, Alessandro Sarracino, Ilenia Apicella, L. de Arcangelis
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pcbi.1008994

Estimating the cumulative incidence of COVID-19 in the United States using influenza surveillance, virologic testing, and mortality data: Four complementary approaches
Cited by: 27
Author(s): Fred Lu, André T. Nguyen, Nicholas Link, Mathieu Molina, Jessica T. Davis, Matteo Chinazzi, Xinyue Xiong, Alessandro Vespignani, Marc Lipsitch, Mauricio Santillana
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1007755

Comparison of methods for rhythm analysis of complex animals’ acoustic signals
Cited by: 8
Author(s): Lara S. Burchardt, Mirjam Knörnschild
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pcbi.1005235

The 5th ISCB Wikipedia Competition: Coming to a Classroom Near You?
Cited by: 3
Author(s): Alastair M. Kilpatrick
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pcbi.1005865

pSSAlib: The partial-propensity stochastic chemical network simulator
Cited by: 6
Author(s): Oleksandr Ostrenko, Pietro Incardona, Rajesh Ramaswamy, Lutz Brusch, Ivo F. Sbalzarini
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pcbi.1003553

A Toolbox for Representational Similarity Analysis
Cited by: 707
Author(s): Hamed Nili, Cai Wingfield, Alexander Walther, Li Su, William D. Marslen–Wilson, Nikolaus Kriegeskorte
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pcbi.1007907

Dynamic decorrelation as a unifying principle for explaining a broad range of brightness phenomena
Cited by: 2
Author(s): Alejandro Lerer, Hans Supèr, Matthias Keil
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1009258

Emergence of directional bias in tau deposition from axonal transport dynamics
Cited by: 6
Author(s): Justin Torok, Pedro D. Maia, Parul Verma, Christopher Mezias, Ashish Raj
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1009126

Optimizing testing for COVID-19 in India
Cited by: 12
Author(s): Philip Cherian, Sandeep Krishna, Gautam I. Menon
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1008795

Extracting representations of cognition across neuroimaging studies improves brain decoding
Cited by: 11
Author(s): Arthur Mensch, Julien Mairal, Bertrand Thirion, Gaël Varoquaux
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1008785

SARS-CoV-2 viral dynamics in non-human primates
Cited by: 41
Author(s): Antônio José Gonçalves, Pauline Maisonnasse, Flora Donati, Mélanie Albert, Sylvie Behillil, Vanessa Contreras, Thibaut Naninck, Romain Marlin, Caroline Solas, Andrés Pizzorno, Julien Lemaître, Nidhal Kahlaoui, Benjamin Terrier, Raphaël Ho Tsong Fang, Vincent Enouf, Nathalie Dereuddre‐Bosquet, Angela Brisebarre, Franck Touret, Catherine Chapon, Bruno Hoën, Bruno Lina, Manuel Rosa‐Calatrava, Xavier de Lamballerie, France Mentré, Roger Le Grand, Sylvie van der Werf, Jérémie Guedj
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1008586

Real-time resolution of short-read assembly graph using ONT long reads
Cited by: 3
Author(s): Son Hoang Nguyen, Minh Duc Cao, Lachlan Coin
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pcbi.1009252

A large-scale brain network mechanism for increased seizure propensity in Alzheimer’s disease
Cited by: 12
Author(s): Luke Tait, Marinho A. Lopes, George Stothart, John Baker, Nina Kazanina, Jiaxiang Zhang, Marc Goodfellow
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1009187

Shrinking Bouma’s window: How to model crowding in dense displays
Cited by: 10
Author(s): Alban Bornet, Adrien Doerig, Michael H. Herzog, Gregory Francis, Erik Van der Burg
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1008546

The complexity of protein interactions unravelled from structural disorder
Cited by: 14
Author(s): Beatriz Seoane, Alessandra Carbone
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pcbi.1003983

Integrative Multi-omics Module Network Inference with Lemon-Tree
Cited by: 82
Author(s): Eric Bonnet, Laurence Calzone, Tom Michoel
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pcbi.1009072

Examining the dynamics of Epstein-Barr virus shedding in the tonsils and the impact of HIV-1 coinfection on daily saliva viral loads
Cited by: 8
Author(s): Catherine Byrne, Christine Johnston, Jackson Orem, Fred Okuku, Meei‐Li Huang, Habibur Rahman, Anna Wald, Lawrence Corey, Joshua T Schiffer, Corey Casper, Daniel Coombs, Soren Gantt
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1003676

CGBayesNets: Conditional Gaussian Bayesian Network Learning and Inference with Mixed Discrete and Continuous Data
Cited by: 55
Author(s): Michael J. McGeachie, Hsun-Hsien Chang, Scott T. Weiss
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pcbi.1008813

The biophysical basis underlying the maintenance of early phase long-term potentiation
Cited by: 5
Author(s): Moritz F. P. Becker, Christian Tetzlaff
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1009251

Mathematical framework for place coding in the auditory system
Cited by: 1
Author(s): Alex D. Reyes
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1007497

An in silico analysis of robust but fragile gene regulation links enhancer length to robustness
Cited by: 6
Author(s): Kenneth Barr, John Reinitz, Ovidiu Radulescu
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pcbi.1008981

An image-computable model of human visual shape similarity
Cited by: 12
Author(s): Yaniv Morgenstern, Frieder Hartmann, Fritz Schmidt, Henning Tiedemann, Eugen Prokott, Guido Maiello, Roland W. Fleming
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1008710

Basis profile curve identification to understand electrical stimulation effects in human brain networks
Cited by: 15
Author(s): Kai J. Miller, Klaus‐Robert Müller, Dora Hermes
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pcbi.1008670

Modulation of the dynamics of cerebellar Purkinje cells through the interaction of excitatory and inhibitory feedforward pathways
Cited by: 8
Author(s): Yuanhong Tang, Lingling An, Ye Yuan, Qingqi Pei, Quan Wang, Jian K. Liu
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pcbi.1007648

Striatal network modeling in Huntington’s Disease
Cited by: 7
Author(s): Adam Ponzi, Scott J. Barton, Kendra D. Bunner, Claudia Rangel‐Barajas, Emily S. Zhang, Benjamin R. Miller, George V. Rebec, James Kozloski
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pcbi.1002916

Spartan: A Comprehensive Tool for Understanding Uncertainty in Simulations of Biological Systems
Cited by: 75
Author(s): Kieran Alden, Mark Read, Jon Timmis, Paul S. Andrews, Henrique Veiga-Fernandes, Mark Coles
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pcbi.1007804

Decentralized control of insect walking: A simple neural network explains a wide range of behavioral and neurophysiological results
Cited by: 41
Author(s): Malte Schilling, Holk Cruse
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pcbi.1009202

Dendritic normalisation improves learning in sparsely connected artificial neural networks
Cited by: 6
Author(s): Alex D. Bird, Paul Jedlicka, Hermann Cuntz
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1008958

Balanced networks under spike-time dependent plasticity
Cited by: 10
Author(s): Alan Eric Akil, Robert Rosenbaum, Krešimir Josić
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1007693

Tensile force-induced cytoskeletal remodeling: Mechanics before chemistry
Cited by: 15
Author(s): Xiaona Li, Qin Ni, Xiuxiu He, Jun Kong, Soon-Mi Lim, Garegin A. Papoian, Jerome P. Trzeciakowski, Andreea Trache, Yi Jiang
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pcbi.1002799

The PLOS Computational Biology Software Section
Cited by: 6
Author(s): Andreas Prlić, Hilmar Lapp
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pcbi.1008075

Electrical coupling controls dimensionality and chaotic firing of inferior olive neurons
Cited by: 14
Author(s): Huu Hoang, Eric J. Lang, Yoshito Hirata, Isao T. Tokuda, Kazuyuki Aihara, Keisuke Toyama, Mitsuo Kawato, Nicolas Schweighofer
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pcbi.1008847

Avoiding the bullies: The resilience of cooperation among unequals
Cited by: 1
Author(s): Michael Foley, Rory Smead, Patrick Forber, Christoph Riedl
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1008057

Temperature-robust activity patterns arise from coordinated axonal Sodium channel properties
Cited by: 7
Author(s): Margaret DeMaegd, Wolfgang Stein
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pcbi.1008691

Computational analysis of GAL pathway pinpoints mechanisms underlying natural variation
Cited by: 1
Author(s): Jiayin Hong, Julius Palme, Bo Hua, Michael Springer
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pcbi.1007954

Winter is coming: Pathogen emergence in seasonal environments
Cited by: 9
Author(s): Philippe Carmona, Sylvain Gandon
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pcbi.1008790

Computational epitope map of SARS-CoV-2 spike protein
Cited by: 96
Author(s): Mateusz Sikora, Sören von Bülow, Florian Blanc, Michael Gecht, Roberto Covino, Gerhard Hummer
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1008021

Forecasting unprecedented ecological fluctuations
Cited by: 9
Author(s): Samuel R. Bray, Bo Wang
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pcbi.1009052

Efficient encoding of spectrotemporal information for bat echolocation
Cited by: 1
Author(s): Adarsh Chitradurga Achutha, Herbert Peremans, Uwe Firzlaff, Dieter Vanderelst
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1008451

A modular framework for multiscale, multicellular, spatiotemporal modeling of acute primary viral infection and immune response in epithelial tissues and its application to drug therapy timing and effectiveness
Cited by: 38
Author(s): T. J. Sego, Josua O. Aponte-Serrano, Juliano Ferrari Gianlupi, Samuel Heaps, Kira Breithaupt, Lutz Brusch, Jessica R. Crawshaw, James M. Osborne, Ellen M. Quardokus, Richard K. Plemper, James A. Glazier
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pcbi.1002529

Exploring Massive, Genome Scale Datasets with the GenometriCorr Package
Cited by: 168
Author(s): Alexander V. Favorov, Loris Mularoni, Leslie Cope, Yulia A. Medvedeva, Andrey A. Mironov, Vsevolod J. Makeev, Sarah J. Wheelan
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pcbi.1008722

Integrated information structure collapses with anesthetic loss of conscious arousal in Drosophila melanogaster
Cited by: 13
Author(s): Angus Leung, Dror Cohen, Bruno van Swinderen, Naotsugu Tsuchiya
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1007965

Resilience of three-dimensional sinusoidal networks in liver tissue
Cited by: 10
Author(s): Jens Karschau, André Scholich, Jonathan Wise, Hernán Morales‐Navarrete, Yannis Kalaidzidis, Marino Zerial, Benjamin M. Friedrich
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pcbi.1007848

Mechanistic model of hormonal contraception
Cited by: 4
Author(s): Andrew A. Wright, Ghassan N. Fayad, James F. Selgrade, Mette S. Olufsen
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pcbi.1002397

AutoClickChem: Click Chemistry in Silico
Cited by: 38
Author(s): Jacob D. Durrant, J. Andrew McCammon
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pcbi.1009415

Rats spontaneously perceive global motion direction of drifting plaids
Cited by: 2
Author(s): Giulio Matteucci, Benedetta Zattera, Rosilari Bellacosa Marotti, Davide Zoccolan
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pcbi.1002854

Getting More Out of Biomedical Documents with GATE's Full Lifecycle Open Source Text Analytics
Cited by: 295
Author(s): Hamish Cunningham, Valentin Tablan, Angus Roberts, Kalina Bontcheva
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pcbi.1007934

Microbial communities display alternative stable states in a fluctuating environment
Cited by: 19
Author(s): Clare I. Abreu, Vilhelm L. Andersen Woltz, Jonathan Friedman, Jeff Gore
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pcbi.1008525

A novel stochastic simulation approach enables exploration of mechanisms for regulating polarity site movement
Cited by: 7
Author(s): Samuel A. Ramirez, Michael Pablo, Sean Burk, Daniel J. Lew, Timothy C. Elston
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1008080

Flexible neural connectivity under constraints on total connection strength
Cited by: 1
Author(s): Gabriel Koch Ocker, Michael A. Buice
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pcbi.1008510

Activity-mediated accumulation of potassium induces a switch in firing pattern and neuronal excitability type
Cited by: 5
Author(s): Susana Andrea Contreras, Jan-Hendrik Schleimer, Allan T. Gulledge, Susanne Schreiber
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1008161

Cell signaling model for arterial mechanobiology
Cited by: 34
Author(s): Linda Irons, Jay D. Humphrey
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pcbi.1009356

AIM: A network model of attention in auditory cortex
Cited by: 4
Author(s): Kenny F. Chou, Kamal Sen
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pcbi.1008728

Estimating the cumulative incidence of SARS-CoV-2 with imperfect serological tests: Exploiting cutoff-free approaches
Cited by: 11
Author(s): Judith A. Bouman, Julien Riou, Sebastian Bonhoeffer, Roland R. Regoes
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1007719

In silico prediction of ARB resistance: A first step in creating personalized ARB therapy
Cited by: 4
Author(s): Shane D. Anderson, Asna Tabassum, Jae Kyung Yeon, Garima Sharma, Priscilla Santos, Tik Hang Soong, Yin Win Thu, Isaac Nies, Tomomi Kurita, Andrew Chandler, Abdelaziz Alsamarah, Rhye‐Samuel Kanassatega, Yun Luo, Wesley M. Botello‐Smith, Bradley T. Andresen
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pcbi.1008607

PASA: Proteomic analysis of serum antibodies web server
Cited by: 8
Author(s): Oren Avram, Aya Kigel, Anna Vaisman-Mentesh, Sharon Kligsberg, Shai Rosenstein, Yael Dror, Tal Pupko, Yariv Wine
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pcbi.1008737

Cholinergic neuromodulation of inhibitory interneurons facilitates functional integration in whole-brain models
Cited by: 8
Author(s): Carlos Coronel-Oliveros, Rodrigo Cofré, Patricio Orio
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pcbi.1008746

Margination and adhesion dynamics of tumor cells in a real microvascular network
Cited by: 15
Author(s): Sitong Wang, Ting Ye, Guansheng Li, Xuejiao Zhang, Huixin Shi
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pcbi.1009206

Bridging cell-scale simulations and radiologic images to explain short-time intratumoral oxygen fluctuations
Cited by: 4
Author(s): Jessica Kingsley, James Costello, Natarajan Raghunand, Katarzyna A. Rejniak
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1008529

Minimal biophysical model of combined antibiotic action
Cited by: 4
Author(s): Bor Kavčič, Gašper Tkačik, Tobias Bollenbach
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pcbi.1008765

Patterns of selection against centrosome amplification in human cell lines
Cited by: 3
Author(s): Marco António Dias Louro, Mónica Bettencourt-Dias, Claudia Bank
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1009005

A new phylodynamic model of Mycobacterium bovis transmission in a multi-host system uncovers the role of the unobserved reservoir
Cited by: 2
Author(s): Anthony O’Hare, Daniel Balaz, David M. Wright, Carl McCormick, S.W.J. McDowell, Hannah Trewby, Robin Skuce, Rowland R. Kao
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1009333

A hydro-osmotic coarsening theory of biological cavity formation
Cited by: 14
Author(s): Mathieu Le Verge-Serandour, Hervé Turlier
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pcbi.1008658

Estimating the extrinsic incubation period of malaria using a mechanistic model of sporogony
Cited by: 17
Author(s): Isaac J. Stopard, Thomas S. Churcher, Ben Lambert
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pcbi.1006137

Submit a Topic Page to PLOS Computational Biology and Wikipedia
Cited by: 8
Author(s): Daniel Mietchen, Shoshana J. Wodak, Szymon Wąsik, Natalia Szóstak, Christophe Dessimoz
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pcbi.1008964

Insights into the dynamic trajectories of protein filament division revealed by numerical investigation into the mathematical model of pure fragmentation
Cited by: 8
Author(s): Magali Tournus, Miguel Escobedo, Wei‐Feng Xue, Marie Doumic
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pcbi.1008629

Sparse deep predictive coding captures contour integration capabilities of the early visual system
Cited by: 18
Author(s): Victor Boutin, Angelo Franciosini, Frédéric Chavane, Franck Ruffier, Laurent Perrinet
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pcbi.1008932

Identification of structures for ion channel kinetic models
Cited by: 9
Author(s): Kathryn Mangold, Wei Wang, Eric K. Johnson, Druv Bhagavan, Jonathan D. Moreno, Jeanne M. Nerbonne, Jonathan R. Silva
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1003194

Using Biological Pathway Data with Paxtools
Cited by: 59
Author(s): Emek Demir, Özgün Babur, Igor Rodchenkov, Bülent Arman Aksoy, Ken Fukuda, Benjamin Groß, Onur Sumer, Gary D. Bader, Chris Sander
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pcbi.1008996

Growth rules for the repair of Asynchronous Irregular neuronal networks after peripheral lesions
Cited by: 1
Author(s): Ankur Sinha, Christoph Metzner, Neil Davey, Roderick Adams, Michael Schmuker, Volker Steuber
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1007700

Social behavioural adaptation in Autism
Cited by: 9
Author(s): Baudouin Forgeot d’Arc, Marie Devaine, Jean Daunizeau
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pcbi.1008160

Computational estimates of mechanical constraints on cell migration through the extracellular matrix
Cited by: 6
Author(s): Ondrej Maxian, Alex Mogilner, Wanda Strychalski
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pcbi.1008668

A sensory integration account for time perception
Cited by: 11
Author(s): Alessandro Toso, Arash Fassihi, Luciano Paz, Francesca Pulecchi, Mathew E. Diamond
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pcbi.1009248

Computational Eurotransplant kidney allocation simulations demonstrate the feasibility and benefit of T-cell epitope matching
Cited by: 6
Author(s): Matthias Niemann, Nils Lachmann, Kirsten Geneugelijk, Eric Spierings
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1009163

Regulating synchronous oscillations of cerebellar granule cells by different types of inhibition
Cited by: 3
Author(s): Yuanhong Tang, Lingling An, Quan Wang, Jian K. Liu
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1008750

The intrinsically disordered N-terminus of the voltage-dependent anion channel
Cited by: 8
Author(s): Jordane Preto, Isabelle Krimm
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pcbi.1009019

Ion dynamics at the energy-deprived tripartite synapse
Cited by: 9
Author(s): Manu Kalia, Hil Gaétan Ellart Meijer, Stephan A. van Gils, Michel Johannes Antonius Maria van Putten, Christine R. Rose
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1008963

Cortical propagation tracks functional recovery after stroke
Cited by: 5
Author(s): Gloria Cecchini, Alessandro Scaglione, Anna Letizia Allegra Mascaro, Curzio Checcucci, Emilia Conti, Ihusan Adam, Duccio Fanelli, Roberto Livi, Francesco S. Pavone, Thomas Kreuz
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1008450

In silico mutagenesis of human ACE2 with S protein and translational efficiency explain SARS-CoV-2 infectivity in different species
Cited by: 32
Author(s): Javier Delgado, Xavier Hernandez‐Alias, Damiano Cianferoni, Luís Serrano
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pcbi.1009434

A model of head direction and landmark coding in complex environments
Cited by: 10
Author(s): Yijia Yan, Neil Burgess, Andrej Bičanski
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pcbi.1009194

Prioritizing and characterizing functionally relevant genes across human tissues
Cited by: 3
Author(s): Gowthami Somepalli, Sarthak Sahoo, Arashdeep Singh, Sridhar Hannenhalli
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1008129

Transmission delays and frequency detuning can regulate information flow between brain regions
Cited by: 53
Author(s): Aref Pariz, Ingo Fischer, Alireza Valizadeh, Claudio R. Mirasso
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1008440

Control of filament length by a depolymerizing gradient
Cited by: 6
Author(s): Arnab Datta, David Harbage, Jané Kondev
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pcbi.1009386

Grey-box modeling and hypothesis testing of functional near-infrared spectroscopy-based cerebrovascular reactivity to anodal high-definition tDCS in healthy humans
Cited by: 11
Author(s): Yashika Arora, Pushpinder Walia, Mitsuhiro Hayashibe, Makii Muthalib, Shubhajit Roy Chowdhury, Stéphane Perrey, Anirban Dutta
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pcbi.1009204

Mathematical modeling of N-803 treatment in SIV-infected non-human primates
Cited by: 3
Author(s): Jonathan W. Cody, Amy L. Ellis-Connell, Shelby L. O’Connor, Elsje Pienaar
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1009137

A computational model of pig ventricular cardiomyocyte electrophysiology and calcium handling: Translation from pig to human electrophysiology
Cited by: 3
Author(s): Namit Gaur, Xiaoyan Qi, David Benoist, Olivier Bernus, Ruben Coronel, Stanley Nattel, Edward J. Vigmond
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1007831

A network model of the barrel cortex combined with a differentiator detector reproduces features of the behavioral response to single-neuron stimulation
Cited by: 7
Author(s): Davide Bernardi, Guy Doron, Michael Brecht, Benjamin Lindner
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pcbi.1008398

Numerical evaluation reveals the effect of branching morphology on vessel transport properties during angiogenesis
Cited by: 6
Author(s): Fatemeh Mirzapourshafiyi, Yukinori Kametani, Takao Hikita, Yosuke Hasegawa, Masanori Nakayama
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pcbi.1008553

Neural signatures of arbitration between Pavlovian and instrumental action selection
Cited by: 7
Author(s): Samuel J. Gershman, Marc Guitart-Masip, James F. Cavanagh
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pcbi.1008983

Elucidation of trophic interactions in an unusual single-cell nitrogen-fixing symbiosis using metabolic modeling
Cited by: 9
Author(s): Debolina Sarkar, Marine Landa, Anindita Bandyopadhyay, Himadri B. Pakrasi, Jonathan P. Zehr, Costas D. Maranas
Software Mentions: 2
Published: over 3 years ago

10.1093/database/bat059

Version 6 of the consensus yeast metabolic network refines biochemical coverage and improves model performance
Cited by: 85
Author(s): Benjamin D. Heavner, Kieran Smallbone, Nathan D. Price, Larry P. Walker
Software Mentions: 2
Published: almost 12 years ago

10.1186/s40694-021-00111-w

Preservation stress resistance of melanin deficient conidia from Paecilomyces variotii and Penicillium roqueforti mutants generated via CRISPR/Cas9 genome editing
Cited by: 17
Author(s): Sjoerd J Seekles, Pepijn P. P. Teunisse, Maarten Punt, Tom van den Brule, Jan Dijksterhuis, Jos Houbraken, Han A. B. Wösten, Arthur F. J. Ram
Software Mentions: 2
Published: over 3 years ago