pypi: Assembly | Projects | Ecosyste.ms: Papers

10.24272/j.issn.2095-8137.2018.027

AutoSeqMan：用于组装第一代测序数据的自动化工具
Cited by: 5
Author(s): Jing Jin, Yanbo Sun
Software Mentions: 1
Published: almost 7 years ago

10.7717/peerj.11348

ToRQuEMaDA: tool for retrieving queried Eubacteria, metadata and dereplicating assemblies
Cited by: 5
Author(s): Raphaël R. Léonard, Marie Leleu, Mick Van Vlierberghe, Luc Cornet, Frédéric Kerff, Denis Baurain
Software Mentions: 1
Published: over 3 years ago

10.1007/s11120-020-00806-y

Proximity-based proteomics reveals the thylakoid lumen proteome in the cyanobacterium Synechococcus sp. PCC 7002
Cited by: 5
Author(s): Kelsey Dahlgren, Colin Gates, Thomas Lee, Jeffrey C. Cameron
Software Mentions: 1
Published: almost 4 years ago

10.1111/pbi.13340

PINOID regulates floral organ development by modulating auxin transport and interacts with MADS16 in rice
Cited by: 24
Author(s): Huamao Wu, Dong‐Jiang Xie, Zuo‐Shun Tang, Dong‐Qiao Shi, Wei‐Cai Yang
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pbio.0050254

The Diploid Genome Sequence of an Individual Human
Cited by: 1,650
Author(s): Samuel Lévy, Granger Sutton, Pauline C. Ng, Lars Feuk, Aaron L. Halpern, Brian P. Walenz, Nelson Axelrod, Jiaqi Huang, Ewen F. Kirkness, Gennady Denisov, Lin Yuan, Jeffrey R. MacDonald, Andy Wing Chun Pang, Mary Shago, Timothy B. Stockwell, Alexia Tsiamouri, Vineet Bafna, Vikas Bansal, Saul Kravitz, Dana Busam, Karen Beeson, Tina C McIntosh, Karin Remington, Josep F. Abril, John Gill, Jon Borman, Yu-Hui Rogers, M.E. Frazier, Stephen W. Scherer, Robert L. Strausberg, J. Craig Venter
Software Mentions: 1
Published: about 17 years ago

10.1371/journal.pgen.1004284

The Sequence-Specific Transcription Factor c-Jun Targets Cockayne Syndrome Protein B to Regulate Transcription and Chromatin Structure
Cited by: 29
Author(s): Robert J. Lake, Erica L. Boetefuer, Pei-Fang Tsai, Jaeseok Jeong, In-Chan Choi, Kyoung Jae Won, Hua-Ying Fan
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pntd.0004332

Whole Genome Sequencing of Mycobacterium africanum Strains from Mali Provides Insights into the Mechanisms of Geographic Restriction
Cited by: 33
Author(s): Kathryn Winglee, Abigail Manson McGuire, Mamoudou Maiga, Thomas Abeel, Terrance Shea, Christopher A. Desjardins, Bassirou Diarra, Bocar Baya, Moumine Sanogo, Souleymane Diallo, Ashlee M. Earl, William R. Bishai
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0148755

Rare Copy Number Variants Identified Suggest the Regulating Pathways in Hypertension-Related Left Ventricular Hypertrophy
Cited by: 8
Author(s): Boon Peng Hoh, Julia Ashazila Mat Jusoh, Christian R. Marshall, Fadhlina Abd Majid, Norlaila Danuri, Fashieha Basir, Bhooma Thiruvahindrapuram, Stephen W. Scherer, Khalid Yusoff
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0258317

Development of ELISA based on Bacillus anthracis capsule biosynthesis protein CapA for naturally acquired antibodies against anthrax
Cited by: 0
Author(s): Tuvshinzaya Zorigt, Yoshikazu Furuta, Manyando Simbotwe, Akihiro Ochi, Mai Tsujinouchi, Misheck Shawa, Tomoko Shimizu, Norikazu Isoda, Jargalsaikhan Enkhtuya, Hideaki Higashi
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pone.0052414

Crumple: A Method for Complete Enumeration of All Possible Pseudoknot-Free RNA Secondary Structures
Cited by: 8
Author(s): Samuel Bleckley, Jonathan Stone, Susan J. Schroeder
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0109908

Nothing Special in the Specialist? Draft Genome Sequence of Cryomyces antarcticus, the Most Extremophilic Fungus from Antarctica
Cited by: 20
Author(s): Katja Sterflinger, Ksenija Lopandić, Ram Vinay Pandey, Barbara Blasi, Albert Kriegner
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0090831

An Efficient Strategy of Screening for Pathogens in Wild-Caught Ticks and Mosquitoes by Reusing Small RNA Deep Sequencing Data
Cited by: 9
Author(s): Lu Zhang, Zhiyi Zhang, Xiaoping An, Hang Fan, Mai‐Juan Ma, Benjamin D. Anderson, Jia-Fu Jiang, Wei Liu, Wu‐Chun Cao, Yigang Tong
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0232539

Fluorescent reporter plasmids for single-cell and bulk-level composition assays in E. faecalis
Cited by: 3
Author(s): Kelsey M. Hallinen, Keanu A. Guardiola-Flores, Kevin B. Wood
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0209463

Analysis of Epichloë festucae small secreted proteins in the interaction with Lolium perenne
Cited by: 28
Author(s): Berit Hassing, David J. Winter, Yvonne Becker, Carl H. Mesarich, Carla J. Eaton, Barry Scott
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0118147

Genetic Etiology of Renal Agenesis: Fine Mapping of Renag1 and Identification of Kit as the Candidate Functional Gene
Cited by: 9
Author(s): Nyssa Becker Samanas, Tessa Commers, Kirsten L. Dennison, Quincy Eckert Harenda, Scott G. Kurz, Cynthia M. Lachel, Kristen Leland Wavrin, Michael J. Bowler, Isaäc J. Nijman, Victor Guryev, Edwin Cuppen, Norbert Hübner, Ruth Sullivan, Chad M. Vezina, James D. Shull
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0213094

Multisensory guided associative learning in healthy humans
Cited by: 15
Author(s): Gabriella Eördegh, Attila Őze, Balázs Bodosi, András Puszta, Ákos Pertich, Anett Rosu, György Godó, Attila Nagy
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0056301

The De Novo Assembly of Mitochondrial Genomes of the Extinct Passenger Pigeon (Ectopistes migratorius) with Next Generation Sequencing
Cited by: 26
Author(s): Chih Ming Hung, Rong Lin, Jui Hua Chu, Chia Fen Yeh, Chiou Ju Yao, Shou Hsien Li
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0179525

The development of acquired equivalence from childhood to adulthood—A cross-sectional study of 265 subjects
Cited by: 10
Author(s): Gábor Braunitzer, Attila Őze, Gabriella Eördegh, Anna Pihokker, Petra Rózsa, László Kasik, Szabolcs Kéri, Attila Nagy
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0024249

Selection in Coastal Synechococcus (Cyanobacteria) Populations Evaluated from Environmental Metagenomes
Cited by: 15
Author(s): Vera Tai, Art F. Y. Poon, Ian T. Paulsen, Brian Palenik
Software Mentions: 1
Published: about 13 years ago

10.3390/cells9112507

Light-Regulated Transcription of a Mitochondrial-Targeted K+ Channel
Cited by: 3
Author(s): Anja J. Engel, Laura-Marie Winterstein, Marina Kithil, Markus Langhans, Anna Moroni, Gerhard Thiel
Software Mentions: 1
Published: almost 4 years ago

10.1038/s42003-020-01452-9

An inducible CRISPR interference library for genetic interrogation of Saccharomyces cerevisiae biology
Cited by: 22
Author(s): Amir Momen-Roknabadi, Panos Oikonomou, Maxwell Zegans, Saeed Tavazoie
Software Mentions: 1
Published: almost 4 years ago

10.1007/s00294-020-01143-2

Golden Gate vectors for efficient gene fusion and gene deletion in diverse filamentous fungi
Cited by: 10
Author(s): Tim A. Dahlmann, Dominik Terfehr, Kordula Becker, Ines Teichert
Software Mentions: 1
Published: almost 4 years ago

10.1093/dnares/dsv015

Tiling Assembly: a new tool for reference annotation-independent transcript assembly and novel gene identification by RNA-sequencing
Cited by: 2
Author(s): Kenneth A. Watanabe, Arielle Homayouni, Tara Tufano, J. M. Andrade López, Patricia Ringler, Paul J. Rushton, Qi Shen
Software Mentions: 1
Published: about 9 years ago

10.3389/fbioe.2021.603832

Integration of Proteomics and Metabolomics Into the Design, Build, Test, Learn Cycle to Improve 3-Hydroxypropionic Acid Production in Aspergillus pseudoterreus
Cited by: 10
Author(s): Kyle R. Pomraning, Ziyu Dai, Nathalie Munoz Munoz, Young-Mo Kim, Yuqian Gao, Shuang Deng, Joonhoon Kim, Beth A. Hofstad, Marie Swita, Teresa Lemmon, James R. Collett, Ellen Panisko, Bobbie‐Jo Webb‐Robertson, Jeremy Zucker, Carrie Nicora, Henrique De Paoli, Scott E. Baker, Kristin Burnum-Johnson, Nathan J. Hillson, Jon Magnuson
Software Mentions: 1
Published: over 3 years ago

10.3389/fbioe.2020.00899

Killing Two Birds With One Stone – Strain Engineering Facilitates the Development of a Unique Rhamnolipid Production Process
Cited by: 24
Author(s): Isabel Bator, Tobias Karmainski, Till Tiso, Lars M. Blank
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2021.641415

Genetic Plurality of OXA/NDM-Encoding Features Characterized From Enterobacterales Recovered From Czech Hospitals
Cited by: 18
Author(s): Kateřina Chudějová, Lucie Kraftova, Vittoria Mattioni Marchetti, Jaroslav Hrabák, Costas C. Papagiannitsis, Ibrahim Bitar
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2017.00780

A Mitochondrial Autonomously Replicating Sequence from Pichia pastoris for Uniform High Level Recombinant Protein Production
Cited by: 19
Author(s): Jan Philipp Schwarzhans, Tobias Luttermann, Daniel Wibberg, Anderson M. Winkler, Wolfgang Hübner, Thomas Huser, Jörn Kalinowski, Karl Friehs
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2021.692986

In vivo Inhibition of the 3-Dehydroquinate Synthase by 7-Deoxysedoheptulose Depends on Promiscuous Uptake by Sugar Transporters in Cyanobacteria
Cited by: 5
Author(s): Johanna Rapp, Berenike Wagner, Klaus Brilisauer, Karl Forchhammer
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2021.603700

Fluorometric Liposome Screen for Inhibitors of a Physiologically Important Bacterial Ion Channel
Cited by: 0
Author(s): Andreia S. Fernandes, António R. Pombinho, Celso M. Teixeira-Duarte, J.H. Morais-Cabral, Carol A. Harley
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2018.02932

Functionality of Two Origins of Replication in Vibrio cholerae Strains With a Single Chromosome
Cited by: 16
Author(s): Matthias Bruhn, Daniel Schindler, Franziska S. Kemter, Michael R. Wiley, Kitty Chase, G. I. Koroleva, Gustavo Palacios, Shanmuga Sozhamannan, Torsten Waldminghaus
Software Mentions: 1
Published: almost 6 years ago

10.3389/fpls.2016.00246

COLORFUL-Circuit: A Platform for Rapid Multigene Assembly, Delivery, and Expression in Plants
Cited by: 22
Author(s): Hassan Ghareeb, Sabine Laukamm, Volker Lipka
Software Mentions: 1
Published: over 8 years ago

10.3389/fpls.2017.01528

Novel Protein-Protein Inhibitor Based Approach to Control Plant Ethylene Responses: Synthetic Peptides for Ripening Control
Cited by: 16
Author(s): Mareike Kessenbrock, Simone Klein, Lena Müller, Maurício Hunsche, Georg Noga, Georg Groth
Software Mentions: 1
Published: about 7 years ago

10.3389/fpsyt.2020.571053

Maintained Visual-, Auditory-, and Multisensory-Guided Associative Learning Functions in Children With Obsessive–Compulsive Disorder
Cited by: 5
Author(s): Ákos Pertich, Gabriella Eördegh, Laura Németh, Orsolya Hegedűs, Dorottya Őri, András Puszta, Péter Nagy, Szabolcs Kéri, Attila Nagy
Software Mentions: 1
Published: almost 4 years ago

10.3390/genes11060604

Identification of the Ovine Keratin-Associated Protein 2-1 Gene and Its Sequence Variation in Four Chinese Sheep Breeds
Cited by: 5
Author(s): Jianqing Wang, Huitong Zhou, Jonathan G. H. Hickford, Yuzhu Luo, Hua Gong, Jiang Hu, Xiu Liu, Shaobin Li, Yize Song, Na Ke, Lirong Qiao
Software Mentions: 1
Published: over 4 years ago

10.1128/genomeA.00528-16

Chromosome and Plasmids of the Tick-Borne Relapsing Fever Agent Borrelia hermsii
Cited by: 13
Author(s): Alan G. Barbour
Software Mentions: 1
Published: over 8 years ago

10.1128/genomeA.00306-17

Complete Genome Sequence of the Uropathogenic Escherichia coli Strain NU14
Cited by: 0
Author(s): Kurosh S. Mehershahi, Swaine L. Chen
Software Mentions: 1
Published: over 7 years ago

10.1186/s13059-014-0517-9

BAsE-Seq: a method for obtaining long viral haplotypes from short sequence reads
Cited by: 45
Author(s): Lewis Z. Hong, Shuzhen Hong, Han Teng Wong, Pauline Aw, Yan Cheng, Andreas Wilm, Paola Flórez de Sessions, Seng Gee Lim, Niranjan Nagarajan, Martin L. Hibberd, Stephen R. Quake, William F. Burkholder
Software Mentions: 1
Published: about 10 years ago

10.1186/s13036-020-00253-2

FimH as a scaffold for regulated molecular recognition
Cited by: 0
Author(s): Shivani Gupta Ludwig, Casey L. Kiyohara, Laura A. Carlucci, Dagmara I. Kisiela, Evgeni V. Sokurenko, Wendy E. Thomas
Software Mentions: 1
Published: almost 4 years ago

10.1186/1758-2946-3-S1-P19

Towards automated metabolome assembly: application of text mining to correlate small molecules, targets and tissues
Cited by: 1
Author(s): Pablo Moreno-Ger, Kalai Vanii Jayaseelan, Christoph Steinbeck
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.ppat.1006890

Epstein-Barr virus nuclear antigen EBNA-LP is essential for transforming naïve B cells, and facilitates recruitment of transcription factors to the viral genome
Cited by: 43
Author(s): Agnieszka Szymula, Richard D. Palermo, Amr Bayoumy, Ian J. Groves, Mohammed Ba Abdullah, Beth Holder, Rob White
Software Mentions: 1
Published: over 6 years ago

10.1186/s13014-017-0860-6

Understanding the potentiality of accelerator based-boron neutron capture therapy for osteosarcoma: dosimetry assessment based on the reported clinical experience
Cited by: 16
Author(s): Silva Bortolussi, Ian Postuma, Nicoletta Protti, Lucas Provenzano, Cinzia Ferrari, Laura Cansolino, Paolo Dionigi, Olimpio Galasso, Giorgio Gasparini, S. Altieri, Shin Miyatake, Sara Josefina González
Software Mentions: 1
Published: about 7 years ago

10.1038/srep29388

Assembly PCR synthesis of optimally designed, compact, multi-responsive promoters suited to gene therapy application
Cited by: 7
Author(s): Hodan Mohamed, Yuti Chernajovsky, David Gould
Software Mentions: 1
Published: over 8 years ago

10.1038/srep40447

An optimistic protein assembly from sequence reads salvaged an uncharacterized segment of mouse picobirnavirus
Cited by: 2
Author(s): Gabriel González, Michihito Sasaki, Lucy Burkitt-Gray, Toshikazu Kamiya, Noriko M. Tsuji, Hirofumi Sawa, Kimihito Ito
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-20684-8

Demonstration of ion channel synthesis by isolated squid giant axon provides functional evidence for localized axonal membrane protein translation
Cited by: 17
Author(s): Chhavi Mathur, Kory R. Johnson, Brian A. Tong, Pablo Miranda, Deepa Srikumar, Daniel Basilio, Ramón Latorre, Francisco Bezanilla, Miguel Holmgren
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-22796-7

Period Increase and Amplitude Distribution of Kink Oscillation of Coronal Loop
Cited by: 28
Author(s): Weiyi Su, Yang Guo, R. Erdélyi, Zongjun Ning, M. D. Ding, X. Cheng, Baolin Tan
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-45978-3

Power-spectra and cross-frequency coupling changes in visual and Audio-visual acquired equivalence learning
Cited by: 5
Author(s): András Puszta, Ákos Pertich, Xénia Katona, Balázs Bodosi, Diána Nyujtó, Zsófia Giricz, Gabriella Eördegh, Attila Nagy
Software Mentions: 1
Published: over 5 years ago

10.3390/s21082589

Adaptive Simplex Architecture for Safe, Real-Time Robot Path Planning
Cited by: 12
Author(s): Tudor B. Ionescu
Software Mentions: 1
Published: over 3 years ago

Projects: pypi: Assembly

Papers Mentioning Assembly 147