Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: ARGs-OAP

https://packages.ecosyste.ms/registries/pypi.org/packages/ARGs-OAP

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Latest release: almost 3 years ago
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Papers Mentioning ARGs-OAP 19

Evaluating the Potential Antibiotic Resistance Status in Environment Based on the Trait of Microbial Community
Cited by: 9
Author(s): Zhiguo Su, Bei Huang, Quanquan Mu, Donghui Wen
Software Mentions: 9
Published: about 4 years ago

10.1093/molbev/msab029

Herbicide Selection Promotes Antibiotic Resistance in Soil Microbiomes
Cited by: 56
Author(s): Hanpeng Liao, Xi Li, Qiue Yang, Yudan Bai, Peng Cui, Chang Wen, Chen Liu, Zhi Chen, Jiahuan Tang, Jiangang Che, Zhen Yu, Stefan Geisen, Shungui Zhou, Ville‐Petri Friman, Yong‐Guan Zhu
Software Mentions: 8
Published: almost 4 years ago

10.3389/fmicb.2020.00052

sraX: A Novel Comprehensive Resistome Analysis Tool
Cited by: 14
Author(s): Leonardo G. Panunzi
Software Mentions: 5
Published: almost 5 years ago

10.1186/s40168-018-0480-x

Tracking antibiotic resistance gene pollution from different sources using machine-learning classification
Cited by: 100
Author(s): Li-Guan Li, Xiaole Yin, Tong Zhang
Software Mentions: 4
Published: over 6 years ago

10.1128/mSphere.00239-19

Effects of Dairy Manure-Based Amendments and Soil Texture on Lettuce- and Radish-Associated Microbiota and Resistomes
Cited by: 30
Author(s): Giselle Kristi Guron, Gustavo Arango-Argoty, Liqing Zhang, Amy Pruden, Monica A. Ponder
Software Mentions: 3
Published: over 5 years ago

10.1186/s40168-018-0401-z

DeepARG: a deep learning approach for predicting antibiotic resistance genes from metagenomic data
Cited by: 394
Author(s): Gustavo Arango-Argoty, Emily Garner, Amy Pruden, Lenwood S. Heath, Peter J. Vikesland, Liqing Zhang
Software Mentions: 3
Published: almost 7 years ago

10.3389/fmolb.2020.590018

Metagenomic Analysis Reveals the Distribution of Antibiotic Resistance Genes in a Large-Scale Population of Healthy Individuals and Patients With Varied Diseases
Cited by: 13
Author(s): Qinwei Qiu, Jingjing Wang, Yuhong Yan, Bhaskar Roy, Chen Yang, Xuan Shang, Tingfeng Dou, Lijuan Han
Software Mentions: 3
Published: about 4 years ago

10.3390/ijerph16244896

Research and Technological Advances Regarding the Study of the Spread of Antimicrobial Resistance Genes and Antimicrobial-Resistant Bacteria Related to Animal Husbandry
Cited by: 10
Author(s): Na Li, Chong Liu, Zhiguo Zhang, Hongna Li, Tingting Song, Ting Liang, Binxu Li, Luyao Li, Shuo Feng, Qianqian Su, Jing Ye, Changliang Zhu
Software Mentions: 2
Published: almost 5 years ago

10.1099/mgen.0.000272

Antibiotic resistomes of healthy pig faecal metagenomes
Cited by: 19
Author(s): Aoife Joyce, Charley G. P. McCarthy, Sinéad Murphy, Fiona Walsh
Software Mentions: 2
Published: over 5 years ago

10.1186/s40168-019-0670-1

Identification and reconstruction of novel antibiotic resistance genes from metagenomes
Cited by: 76
Author(s): Fanny Berglund, Tobias Österlund, Fredrik Boulund, Nachiket P. Marathe, D. G. Joakim Larsson, Erik Kristiansson
Software Mentions: 2
Published: over 5 years ago

10.12688/wellcomeopenres.15603.1

Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe
Cited by: 88
Author(s): Martin Hunt, Phelim Bradley, Simon Lapierre, S Heys, Mark Thomsit, Michael B. Hall, Kerri M. Malone, Penelope Wintringer, Timothy M Walker, Daniela María Cirillo, Iñaki Comas, Maha Farhat, Philip W. Fowler, Jennifer L. Gardy, Nazir Ismail, Thomas A. Kohl, Vanessa Mathys, Matthias Merker, Stefan Niemann, Shaheed V. Omar, Vitali Sintchenko, Grace Smith, Dick van Soolingen, Philip Supply, Sabira Tahseen, Mark H. Wilcox, Irena Arandjelović, Tim Peto, Derrick W. Crook, Zamin Iqbal
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2021.712843

Metagenomic Survey Reveals More Diverse and Abundant Antibiotic Resistance Genes in Municipal Wastewater Than Hospital Wastewater
Cited by: 6
Author(s): Dengwei Zhang, Ye Peng, Chak-Lun Chan, Hilda On, Hogan Kok-Fung Wai, Sandeep Singh Shekhawat, Akhilendra Bhushan Gupta, Alok Varshney, Rungtip Chuanchuen, Xudong Zhou, Yankai Xia, Suisha Liang, Keiji Fukuda, Krishna Mohan Medicherla, Hein Min Tun
Software Mentions: 2
Published: about 3 years ago

10.1128/mBio.00969-18

Novel Insights into Selection for Antibiotic Resistance in Complex Microbial Communities
Cited by: 97
Author(s): Aimee K. Murray, Lihong Zhang, Xiaole Yin, Tong Zhang, Angus Buckling, Jason Snape, William H. Gaze
Software Mentions: 2
Published: about 6 years ago

10.1016/j.ijantimicag.2019.03.001

Comparing the selective and co-selective effects of different antimicrobials in bacterial communities
Cited by: 29
Author(s): Aimee K. Murray, Lihong Zhang, Jason Snape, William H. Gaze
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-88335-z

Comparison of bacterial communities and antibiotic resistance genes in oxidation ditches and membrane bioreactors
Cited by: 9
Author(s): Lifang Luo, Junqin Yao, Weiguo Liu, Lixin Yang, Hailong Li, Liang Ming, Hui Ma, Ziteng Liu, Yinguang Chen
Software Mentions: 1
Published: over 3 years ago

10.1093/bioinformatics/bty387

Indexed variation graphs for efficient and accurate resistome profiling
Cited by: 45
Author(s): Will Rowe, Martyn Winn
Software Mentions: 1
Published: over 6 years ago

10.1186/s40168-021-01047-4

Metagenomic analysis reveals the shared and distinct features of the soil resistome across tundra, temperate prairie, and tropical ecosystems
Cited by: 43
Author(s): Xiaoqing Qian, Santosh Gunturu, Jiarong Guo, Benli Chai, James R. Cole, Jie Gu, James M. Tiedje
Software Mentions: 1
Published: over 3 years ago

10.1038/s41396-019-0483-z

Selection for antimicrobial resistance is reduced when embedded in a natural microbial community
Cited by: 90
Author(s): Uli Klümper, Mario Recker, Lihong Zhang, Xiaole Yin, Tong Zhang, Angus Buckling, William H. Gaze
Software Mentions: 1
Published: over 5 years ago

10.3390/microorganisms9050923

Antimicrobial Resistance Gene Detection Methods for Bacteria in Animal-Based Foods: A Brief Review of Highlights and Advantages
Cited by: 22
Author(s): Beatriz S. P. Galhano, Rafaela Gomes Ferrari, Pedro Panzenhagen, Ana Carolina S. de Jesus, Carlos Adam Conté-Júnior
Software Mentions: 1
Published: over 3 years ago