Ecosyste.ms: Papers

10.1186/1472-6750-13-26

The alkaline pectate lyase PEL168 of Bacillus subtilis heterologously expressed in Pichia pastorisis more stable and efficient for degumming ramie fiber
Cited by: 37
Author(s): Chengjie Zhang, Yinhua Jia, Cheng Zhou, Liangwei Mao, Guimin Zhang, Yanhe Ma
Software Mentions: 1
Published: over 11 years ago

10.1186/s12885-021-08477-1

Clinicopathologic features of TDO2 overexpression in renal cell carcinoma
Cited by: 5
Author(s): Quoc Thang Pham, Daiki Taniyama, Yohei Sekino, Shintaro Akabane, Takashi Babasaki, Go Kobayashi, Naoya Sakamoto, Kazuhiro Sentani, Naohide Oue, Wataru Yasui
Software Mentions: 1
Published: over 3 years ago

10.1186/s12885-021-08578-x

eCross-cultural adaptation of the spine oncology-specific SOSGOQ2.0 questionnaire to German language and the assessment of its validity and reliability in the clinical setting
Cited by: 6
Author(s): Thomas Datzmann, Wadim Kisel, Jeannet Kramer, Marc Dreimann, J. D. Müller-Broich, Cordula Netzer, Klaus‐Dieter Schaser, Jochen Schmitt, Alexander C. Disch, Klaus‐Dieter Schaser, Alexander C. Disch, Marc Dreimann, J. D. Müller-Broich, Cordula Netzer, Dominik Georg Sauer, Christoph-Eckhard Heyde, Robert L. Schmidt, Michael Kreinest, M. Arand, Ulf Liljenqvist
Software Mentions: 1
Published: about 3 years ago

10.1186/s12885-019-6361-2

Evaluation of an online knowledge translation intervention to promote cancer risk reduction behaviours: findings from a randomized controlled trial
Cited by: 0
Author(s): Sarah Neil-Sztramko, Emily Belita, Anthony J Levinson, Jennifer Boyko, Maureen Dobbins
Software Mentions: 1
Published: about 5 years ago

10.1186/s12885-021-08422-2

Identifying prognostic lncRNAs based on a ceRNA regulatory network in laryngeal squamous cell carcinoma
Cited by: 9
Author(s): Yong Shi, Dongli Yang, Yixiao Qin
Software Mentions: 1
Published: over 3 years ago

10.1186/s12906-016-1367-7

Dose-response effect of berberine on bile acid profile and gut microbiota in mice
Cited by: 49
Author(s): Ying Guo, Youcai Zhang, Wei‐Hua Huang, Felcy Pavithra Selwyn, Curtis D. Klaassen
Software Mentions: 1
Published: about 8 years ago

10.1186/1472-6882-14-385

Treatment of severe fear of childbirth with haptotherapy: design of a multicenter randomized controlled trial
Cited by: 19
Author(s): Gert Klabbers, Klaas Wijma, K.M. Paarlberg, Wilco H. M. Emons, A.J.J.M. Vingerhoets
Software Mentions: 1
Published: about 10 years ago

10.1186/s12895-017-0054-9

Expression profiling and bioinformatic analyses suggest new target genes and pathways for human hair follicle related microRNAs
Cited by: 18
Author(s): Lara M. Hochfeld, Thomas Anhalt, Céline S. Reinbold, Marisol Herrera-Rivero, Nadine Fricker, Markus M. Nöthen, Markus M. Nöthen
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-213X-7-97

A highly conserved regulatory element controls hematopoietic expression of GATA-2in zebrafish
Cited by: 15
Author(s): Zhongan Yang, Hong Jiang, Fang Zhao, Deepa B. Shankar, Kathleen M. Sakamoto, Michael Q. Zhang, Shuo Lin
Software Mentions: 1
Published: over 17 years ago

10.1186/1472-6785-13-50

Relative geographic range of sibling species of host damselflies does not reliably predict differential parasitism by water mites
Cited by: 8
Author(s): Julia J. Mlynarek, Wayne Knee, Mark R. Forbes
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12862-021-01800-1

Exploring the evolutionary characteristics between cultivated tea and its wild relatives using complete chloroplast genomes
Cited by: 10
Author(s): Jiao Peng, Yunlin Zhao, Dong Meng, Shiquan Liu, Zhiyuan Hu, Xiaofen Zhong, Zhenggang Xu
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2148-9-80

On the edge of Bantu expansions: mtDNA, Y chromosome and lactase persistence genetic variation in southwestern Angola
Cited by: 108
Author(s): Márcio M. Coelho, Fernando Sequeira, Donata Luiselli, Sandra Beleza, Jorge Rocha
Software Mentions: 1
Published: over 15 years ago

10.1186/1471-2148-10-314

The imprint of the Slave Trade in an African American population: mitochondrial DNA, Y chromosome and HTLV-1 analysis in the Noir Marron of French Guiana
Cited by: 51
Author(s): Nicolas Brucato, Olivier Cassar, Laure Tonasso, Patricia Tortevoye, Florence Migot-Nabias, Sabine Plancoulaine, Evelyne Guitard, Georges Larrouy, Antoine Gessain, Jean‐Michel Dugoujon
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2148-8-269

Evolutionary analysis of the highly dynamic CHEK2duplicon in anthropoids
Cited by: 5
Author(s): Claudia Münch, Stefan Kirsch, António M. Fernandes, Werner Schempp
Software Mentions: 1
Published: about 16 years ago

10.1186/1471-2148-12-125

Molecular evolution of a-kinase anchoring protein (AKAP)-7: implications in comparative PKA compartmentalization
Cited by: 20
Author(s): Keven R. Johnson, Jessie Nicodemus‐Johnson, Graeme K. Carnegie, Robert S. Danziger
Software Mentions: 1
Published: over 12 years ago

10.1186/s12862-015-0295-3

Growth in fossil and extant deer and implications for body size and life history evolution
Cited by: 44
Author(s): Christian Kolb, Torsten M. Scheyer, Adrian M. Lister, Concepción Azorit, John de Vos, Margaretha A J Schlingemann, Gertrud E. Rößner, Nigel T. Monaghan, Marcelo R. Sánchez‐Villagra
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12876-021-01869-4

Characterization of TGFβ-associated molecular features and drug responses in gastrointestinal adenocarcinoma
Cited by: 5
Author(s): Qiaofeng Zhang, Furong Liu, Lu Qin, Zhibin Liao, Jia Song, Huifang Liang, Xiaoping Chen, Zhanguo Zhang, Bixiang Zhang
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2156-15-7

A genome-wide scan for signatures of selection in Chinese indigenous and commercial pig breeds
Cited by: 59
Author(s): Songbai Yang, Xiuling Li, Kui Li, Bin Fan, Zhonglin Tang
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2156-14-113

Construction of high-density genetic linkage maps for orange-spotted grouper Epinephelus coioidesusing multiplexed shotgun genotyping
Cited by: 39
Author(s): Xinxin You, Liping Shu, Shuisheng Li, Jieming Chen, Jian Luo, Jun Lü, Qian Mu, Jie Bai, Qiuju Xia, Qingchun Chen, Yanjie Cai, Haifa Zhang, Guohua Chen, Haoran Lin, Yong Zhang, Qiong Shi
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2156-10-85

Assessing the utility of whole-genome amplified serum DNA for array-based high throughput genotyping
Cited by: 6
Author(s): Kristine L. Bucasas, Gagan A. Pandya, Sonal Pradhan, Robert Fleischmann, Scott N. Peterson, John W. Belmont
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2156-13-74

Characterization of bovine FUT7 furthers understanding of FUT7 evolution in mammals
Cited by: 2
Author(s): Benoît Laporte, Daniel Petit, Dominique Rocha, Mekki Boussaha, Cécile Grohs, Abderrahman Maftah, Jean‐Michel Petit
Software Mentions: 1
Published: over 12 years ago

10.1186/s12863-019-0738-8

Genome-wide identification and expression analysis of HSP90 gene family in Nicotiana tabacum
Cited by: 22
Author(s): Zhiwei Song, Feilong Pan, Chao Yang, Hao Jia, Jiang Houlong, Fan He, Li NaJia, Xiaochong Lu, Hongying Zhang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-021-07817-6

Genome wide effects of oleic acid on cultured bovine granulosa cells: evidence for the activation of pathways favoring folliculo-luteal transition
Cited by: 7
Author(s): Vengala Rao Yenuganti, Dirk Koczan, Jens Vanselow
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2164-13-390

Computational prediction and validation of C/D, H/ACA and Eh_U3 snoRNAs of Entamoeba histolytica
Cited by: 11
Author(s): Devinder Kaur, Abhishek Kumar Gupta, Vandana Kumari, Rahul Sharma, Alok Bhattacharya, Sudha Bhattacharya
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2164-11-611

The genomic underpinnings of apoptosis in the silkworm, Bombyx mori
Cited by: 71
Author(s): Jinye Zhang, Min‐Hui Pan, Zhi-Ya Sun, Suming Huang, Yu Zhang, Di Liu, Di Zhao, Cheng Lü
Software Mentions: 1
Published: about 14 years ago

10.1186/s12864-019-5657-6

L-lactate induces specific genome wide alterations of gene expression in cultured bovine granulosa cells
Cited by: 7
Author(s): Anja Baufeld, Dirk Koczan, Jens Vanselow
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-019-6208-x

Sex- and tissue-specific transcriptome analyses and expression profiling of olfactory-related genes in Ceracris nigricornis Walker (Orthoptera: Acrididae)
Cited by: 10
Author(s): Hao Yuan, Huihui Chang, Lina Zhao, Chao Yang, Yuan Huang
Software Mentions: 1
Published: about 5 years ago

10.1186/s12864-021-07562-w

Evolutionary research on the expansin protein family during the plant transition to land provides new insights into the development of Tartary buckwheat fruit
Cited by: 6
Author(s): Wenjun Sun, Haomiao Yu, Moyang Liu, Zhaotang Ma, Chi Man Hui
Software Mentions: 1
Published: over 3 years ago

10.1186/s12864-017-3503-2

An integrated approach with new strategies for QSAR models and lead optimization
Cited by: 5
Author(s): Hui Hui Hsu, Yen Chao Hsu, Li Chang, Jinn-Moon Yang
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2164-13-S5-S6

The Corynebacterium pseudotuberculosis in silico predicted pan-exoproteome
Cited by: 17
Author(s): Anderson Santos, Adriana Ribeiro Carneiro, Alfonso Gala-García, Anne Cybelle Pinto, Debmalya Barh, Eudes Guilherme Vieria Barbosa, Flávia Figueira Aburjaile, Fernanda Alves Dorella, Flávia Souza Rocha, Luís Carlos Guimarães, Meritxell Zurita-Turk, Rommel Thiago Jucá Ramos, Síntia Almeida, Siomar C. Soares, Ulisses de Pádua Pereira, Vinicius Carvalho de Abreu, Artur M. S. Silva, Anderson Miyoshi, Vasco Azevedo
Software Mentions: 1
Published: about 12 years ago

10.1186/1471-2164-10-632

Large-scale identification of odorant-binding proteins and chemosensory proteins from expressed sequence tags in insects
Cited by: 182
Author(s): Yalong Xu, Pinjing He, Lan Zhang, Shao-Qing Fang, Shuying Dong, Yongjun Zhang, Fĕi Li
Software Mentions: 1
Published: almost 15 years ago

10.1186/s12864-021-07602-5

Comprehensive analysis and identification of drought-responsive candidate NAC genes in three semi-arid tropics (SAT) legume crops
Cited by: 8
Author(s): Satbeer Singh, Himabindu Kudapa, Vanika Garg, Rajeev K. Varshney
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2164-15-227

Peroxidase gene discovery from the horseradish transcriptome
Cited by: 22
Author(s): Laura Näätsaari, Florian Krainer, Michaël Schubert, Anton Glieder, Gerhard G. Thallinger
Software Mentions: 1
Published: over 10 years ago

10.1186/s12864-021-07878-7

Comprehensive analysis of formin gene family highlights candidate genes related to pollen cytoskeleton and male fertility in wheat (Triticum aestivum L.)
Cited by: 6
Author(s): Wenjing Duan, Zi‐han Liu, Jianfang Bai, Shu Yuan, Yanmei Li, Fengkun Lu, Tianbao Zhang, Jia-hui Sun, Fengting Zhang, Changping Zhao, Liping Zhang
Software Mentions: 1
Published: over 3 years ago

10.1186/s12864-021-07436-1

Genome-wide in silico identification and expression analysis of beta-galactosidase family members in sweetpotato [Ipomoea batatas (L.) Lam]
Cited by: 14
Author(s): Fuyun Hou, Taifeng Du, Zhen Qin, Tao Xu, Aixian Li, Shoukun Dong, Daifu Ma, Zongyun Li, Liming Zhang
Software Mentions: 1
Published: over 3 years ago

10.1186/s12864-018-4654-5

In-depth comparative analysis of malaria parasite genomes reveals protein-coding genes linked to human disease in Plasmodium falciparum genome
Cited by: 7
Author(s): Xuewu Liu, Yuanyuan Wang, Liang Ji, Luojun Wang, Na Qin, Ya Zhao, Gang Zhao
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-15-277

Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza
Cited by: 88
Author(s): Caili Li, Shanfa Lu
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2164-14-317

A burst of ABC genes in the genome of the polyphagous spider mite Tetranychus urticae
Cited by: 117
Author(s): Wannes Dermauw, Edward J. Osborne, Richard M. Clark, Miodrag Grbić, Luc Tirry, Thomas Van Leeuwen
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2164-9-396

Catalogue of epidermal genes: Genes expressed in the epidermis during larval molt of the silkworm Bombyx mori
Cited by: 41
Author(s): Susumu Okamoto, Ryo Futahashi, Takao Kojima, Kazuei Mita, Haruhiko Fujiwara
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2164-14-130

Identification and functional analysis of cytochrome P450 complement in Streptomyces virginiaeIBL14
Cited by: 13
Author(s): Zhizhen Li, Xiaofei Li, Wei Yang, Dong Xiang, Jie Yu, Shuliang Zhu, Man Li, Li Xie, Wang-Yu Tong
Software Mentions: 1
Published: over 11 years ago

10.1186/s12864-019-6137-8

Horizontal gene transfer contributes to virulence and antibiotic resistance of Vibrio harveyi 345 based on complete genome sequence analysis
Cited by: 55
Author(s): Yiqin Deng, Huailiang Xu, Youlu Su, Songlin Liu, Li‐Wen Xu, Zhiyong Guo, Jin Wu, Chang-Hong Cheng
Software Mentions: 1
Published: about 5 years ago

10.1186/1471-2164-15-890

In frame exon skipping in UBE3B is associated with developmental disorders and increased mortality in cattle
Cited by: 36
Author(s): Heli Venhoranta, Hubert Pausch, Krzysztof Flisikowski, Christine Wurmser, Juhani Taponen, Helena Rautala, Alexander Kind, Angelika Schnieke, R. Fries, Hannes Lohi, Magnus Andersson
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12864-020-07212-7

Genome-wide identification of Azospirillum brasilense Sp245 small RNAs responsive to nitrogen starvation and likely involvement in plant-microbe interactions
Cited by: 2
Author(s): Vatsala Koul, Divya Srivastava, Pushplata Prasad Singh, Mandira Kochar
Software Mentions: 1
Published: almost 4 years ago

10.1186/1471-2164-8-51

A genomic survey of the fish parasite Spironucleus salmonicida indicates genomic plasticity among diplomonads and significant lateral gene transfer in eukaryote genome evolution
Cited by: 87
Author(s): Jan O. Andersson, Åsa M. Sjögren, David S. Horner, Colleen A. Murphy, Patricia Dyal, Staffan G. Svärd, John M. Logsdon, Mark A. Ragan, Robert P. Hirt, Andrew J. Roger
Software Mentions: 1
Published: almost 18 years ago

10.1186/s12864-018-5414-2

Identification of new signalling peptides through a genome-wide survey of 250 fungal secretomes
Cited by: 30
Author(s): Morgane Le Marquer, Hélène San Clemente, Christophe Roux, Bruno Savelli, Nicolas Frei dit Frey
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12864-018-4793-8

Comparative analysis of plant MKK gene family reveals novel expansion mechanism of the members and sheds new light on functional conservation
Cited by: 26
Author(s): Min Jiang
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-11-637

Analyses of genome architecture and gene expression reveal novel candidate virulence factors in the secretome of Phytophthora infestans
Cited by: 176
Author(s): Sylvain Raffaele, Joe Win, Liliana Cano, Sophien Kamoun
Software Mentions: 1
Published: about 14 years ago

10.1186/s12864-017-4074-y

Regional association analysis-based fine mapping of three clustered QTL for verticillium wilt resistance in cotton (G. hirsutum. L)
Cited by: 12
Author(s): Yunlei Zhao, Hongmei Wang, Wei Chen, Pei Zhao, Haiyan Gong, Xiaohui Sang, Yànli Cūi
Software Mentions: 1
Published: about 7 years ago

10.1186/1471-2164-7-251

Comparative genomics of fungal allergens and epitopes shows widespread distribution of closely related allergen and epitope orthologues
Cited by: 71
Author(s): Paul Bowyer, Marcin G. Fraczek, David W. Denning
Software Mentions: 1
Published: about 18 years ago

10.1186/1471-2164-8-373

Experimental optimization of probe length to increase the sequence specificity of high-density oligonucleotide microarrays
Cited by: 55
Author(s): Shingo Suzuki, Naoaki Ono, Chikara Furusawa, Akiko Kashiwagi, Tetsuya Yomo
Software Mentions: 1
Published: about 17 years ago

10.1186/s12864-020-6460-0

Genomics-based epidemiology of bovine Mycoplasma bovis strains in Israel
Cited by: 22
Author(s): Yael Yair, Ilya Borovok, Inna Mikula, Rama Falk, L.K. Fox, Uri Gophna, Inna Lysnyansky
Software Mentions: 1
Published: almost 5 years ago

10.1186/1471-2164-10-110

Induction of lipid oxidation by polyunsaturated fatty acids of marine origin in small intestine of mice fed a high-fat diet
Cited by: 60
Author(s): Evert M. van Schothorst, Pavel Flachs, Nicole L.W. Franssen-van Hal, Ondřej Kuda, Annelies Bunschoten, Jos Molthoff, Carolien Vink, Guido Hooiveld, Jan Kopecký, Jaap Keijer
Software Mentions: 1
Published: almost 16 years ago

10.1186/s12864-020-6638-5

Genome-wide identification and expression analysis of PUB genes in cotton
Cited by: 20
Author(s): Xuke Lu, Na Shu, Delong Wang, Junjuan Wang, Xiugui Chen, Binglei Zhang, Shuai Wang, Lixue Guo, Chao Chen, Wuwei Ye
Software Mentions: 1
Published: over 4 years ago

10.1186/s12864-016-2519-3

Evidence for the role of transposons in the recruitment of cis-regulatory motifs during the evolution of C4 photosynthesis
Cited by: 20
Author(s): Chensi Cao, Jiajia Xu, Guangyong Zheng, Xin‐Guang Zhu
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2164-15-1009

Genome-wide analysis of the Hsf family in soybean and functional identification of GmHsf-34 involvement in drought and heat stresses
Cited by: 89
Author(s): Pan-Song Li, Tong Yu, Guanhua He, Ming Chen, Yongbin Zhou, Chai Shou-xi, Zhao‐Shi Xu, You-Zhi Ma
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2164-14-S8-S5

Identification of gene fusions from human lung cancer mass spectrometry data
Cited by: 24
Author(s): Han Sun, Xiaobin Xing, Jing Li, Fengli Zhou, Yunqin Chen, Ying He, Wei Li, Guangwu Wei, Xiao Chang, Jia Jia, Yixue Li, Lu Xie
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2164-9-519

The prediction of protein-protein interaction networks in rice blast fungus
Cited by: 53
Author(s): Fei He, Yan Zhang, Hao Chen, Ziding Zhang, You-Liang Peng
Software Mentions: 1
Published: about 16 years ago

10.1186/1471-2164-15-157

Identification of putative TAL effector targets of the citrus canker pathogens shows functional convergence underlying disease development and defense response
Cited by: 51
Author(s): André Luiz Araújo Pereira, Marcelo Falsarella Carazzolle, Valéria Yukari Abe, Maria Luiza Peixoto de Oliveira, M.N. Domingues, Jaqueline Carmo Silva, Raúl Andrés Cernadas, Celso Eduardo Benedetti
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2164-6-75

Control of gene expression during T cell activation: alternate regulation of mRNA transcription and mRNA stability
Cited by: 173
Author(s): Chris Cheadle, Jinshui Fan, Yoon S. Cho‐Chung, Thomas Werner, Jill Ray, Lana Do, Myriam Gorospe, Kevin G. Becker
Software Mentions: 1
Published: over 19 years ago

10.1186/1471-2164-14-555

Functional requirements driving the gene duplication in 12 Drosophila species
Cited by: 12
Author(s): Yan Zhong, Yanxiao Jia, Yang Gao, Dacheng Tian, Sihai Yang, Xiaohui Zhang
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2164-14-333

Genomic and physiological variability within Group II (non-proteolytic) Clostridium botulinum
Cited by: 50
Author(s): Sandra C. Stringer, Andrew T. Carter, Martin D. Webb, Ewelina Wachnicka, Lisa Crossman, Mohammed Sebaihia, Michael W. Peck
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12864-015-1743-6

Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance
Cited by: 15
Author(s): Chao Chai, Yongqin Wang, Trupti Joshi, Babu Valliyodan, Silvas J. Prince, Lydia Michel, Dong Xu, Henry T. Nguyen
Software Mentions: 1
Published: over 9 years ago

10.1186/1472-6963-10-69

Factors associated with health-seeking behavior among migrant workers in Beijing, China
Cited by: 146
Author(s): Yingchun Peng, Chang Wen-hu, Zhou Haiqing, Hongpu Hu, Wei Liang
Software Mentions: 1
Published: over 14 years ago

10.1186/s12865-019-0320-1

Immunogenicity of Del19 EGFR mutations in Chinese patients affected by lung adenocarcinoma
Cited by: 2
Author(s): Deng Pan, Dapeng Zhou, Weiping Cai, Weibo Wu, Wenhao Tan, Caicun Zhou, Yanyan Lou
Software Mentions: 1
Published: about 5 years ago

10.1186/1471-2334-12-317

High viremia and low level of transmitted drug resistance in anti-retroviral therapy-naïve perinatally-infected children and adolescents with HIV-1 subtype C infection
Cited by: 18
Author(s): Ujjwal Neogi, Pravat Nalini Sahoo, Ayesha De Costa, Anita Shet
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12879-020-4876-4

Computational MHC-I epitope predictor identifies 95% of experimentally mapped HIV-1 clade A and D epitopes in a Ugandan cohort
Cited by: 5
Author(s): Daniel Lule Bugembe, Andrew Obuku Ekii, Nicaise Ndembi, Jennifer Serwanga, Pontiano Kaleebu, Pietro Pala
Software Mentions: 1
Published: over 4 years ago

10.1186/s12881-019-0842-7

Genetic analyses of oculocutaneous albinism types 1 and 2 with four novel mutations
Cited by: 14
Author(s): Qi Yang, Seo Y, Mengting Li, Bobo Xie, Jinsi Luo, Jin Wang, Xinzhou Rong, Qinle Zhang, Zailong Qin, Limei Hang, Shihan Feng, Xin Fan
Software Mentions: 1
Published: over 5 years ago

10.1186/s12881-016-0328-9

Segregation between SMCHD1 mutation, D4Z4 hypomethylation and Facio-Scapulo-Humeral Dystrophy: a case report
Cited by: 12
Author(s): Marie-Cécile Gaillard, Francesca Puppo, Stéphane Roche, Camille Dion, Emmanuelle Salort Campana, Virginie Mariot, C Chaix, Catherine Vovan, Killian Mazaleyrat, Armand Tasmadjian, R. Bernard, Julie Dumonceaux, Shahram Attarian, Nicolas Lévy, Karine Nguyen, Frédérique Magdinier, Marc Bartoli
Software Mentions: 1
Published: about 8 years ago

10.1186/s12881-015-0255-1

Genetic spectrum of dyschromatosis symmetrica hereditaria in Chinese patients including a novel nonstop mutation in ADAR1 gene
Cited by: 10
Author(s): Guolong Zhang, Minhua Shao, Zhixiu Li, Yong Gu, Xuewen Du, Xiuli Wang, Ming Li
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12920-020-00730-z

Identification of genes and miRNA associated with idiopathic recurrent pregnancy loss: an exploratory data mining study
Cited by: 15
Author(s): Wael Bahia, Ismael Soltani, Anouar Abidi, Anis Haddad, Salima Ferchichi, Samia Menif, Wassim Y. Almawi
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2180-13-179

Stabilized homoserine o-succinyltransferases (MetA) or L-methionine partially recovers the growth defect in Escherichia coli lacking ATP-dependent proteases or the DnaK chaperone
Cited by: 10
Author(s): Elena A. Mordukhova, Doo-Il Kim, Jae-Gu Pan
Software Mentions: 1
Published: over 11 years ago

10.1186/s12866-020-01918-0

Changes in the vaginal microbiota associated with primary ovarian failure
Cited by: 12
Author(s): Juan Wang, Jieying Xu, Qixin Han, Weiwei Chu, Gang Lü, Wai‐Yee Chan, Yingying Qin, Yanzhi Du
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2180-14-117

fPoxDB: fungal peroxidase database for comparative genomics
Cited by: 51
Author(s): Jaeyoung Choi, Nicolas Détry, Ki-Tae Kim, Fred O. Asiegbu, Jari P. T. Valkonen, Yong-Hwan Lee
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2180-11-21

Characterization of Conserved Combined T and B Cell Epitopes in Leptospira interrogansMajor Outer Membrane Proteins OmpL1 and LipL41
Cited by: 25
Author(s): Xiaojie Lin, Aijun Sun, Peng Ruan, Zhe Zhang, Jie Yan
Software Mentions: 1
Published: almost 14 years ago

10.1186/1471-2180-11-249

Proteome driven re-evaluation and functional annotation of the Streptococcus pyogenes SF370 genome
Cited by: 8
Author(s): Akira Okamoto, Keiko Yamada
Software Mentions: 1
Published: almost 14 years ago

10.1186/1471-2180-9-166

A single amino acid change (Y318F) in the L-arabitol dehydrogenase (LadA) from Aspergillus niger results in a significant increase in affinity for D-sorbitol
Cited by: 8
Author(s): Lucy Rutten, Cécile Ribot, Blanca Trejo-Aguilar, Han A. B. Wösten, Ronald P. de Vries
Software Mentions: 1
Published: over 15 years ago

10.1186/1471-2199-12-44

Cis-regulatory functions of overlapping HIF-1alpha/E-box/AP-1-like sequences of CD164
Cited by: 8
Author(s): Jingqun Tang, Zhaohui Luo, Guangqian Zhou, Chao Song, Fenglei Yu, Juanjuan Xiang, Gang Li
Software Mentions: 1
Published: about 13 years ago

10.1186/s12860-020-00258-1

Characterization of the interactions between Codanin-1 and C15Orf41, two proteins implicated in congenital dyserythropoietic anemia type I disease
Cited by: 10
Author(s): Grace Swickley, Yehoshua Bloch, Lidor Malka, Adi Meiri, Sharon Noy-Lotan, Amiel Yanai, Hannah Tamary, Benny Motro
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2474-8-12

Gene expression analysis in human osteoblasts exposed to dexamethasone identifies altered developmental pathways as putative drivers of osteoporosis
Cited by: 82
Author(s): Conor Hurson, Joseph S. Butler, D. Keating, David Murray, Denise Sadlier, J. O’Byrne, Peter Doran
Software Mentions: 1
Published: almost 18 years ago

10.1186/s12883-019-1400-9

Recurrent risk of ischemic stroke due to Vertebrobasilar Dolichoectasia
Cited by: 17
Author(s): Zhaoyao Chen, Shuai Zhang, Zhengze Dai, Xi Cheng, Minghua Wu, Qiliang Dai, Xinfeng Liu, Gelin Xu
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2202-9-84

Detecting functional magnetic resonance imaging activation in white matter: Interhemispheric transfer across the corpus callosum
Cited by: 51
Author(s): Erin L. Mazerolle, Ryan C.N. D’Arcy, Steven Beyea
Software Mentions: 1
Published: about 16 years ago

10.1186/s12886-020-01783-5

Detection of active and inactive phases of thyroid-associated ophthalmopathy using deep convolutional neural network
Cited by: 24
Author(s): Chen-Yi Lin, Xuefei Song, Lunhao Li, Yinwei Li, Mengda Jiang, Rou Sun, Huifang Zhou, Xianqun Fan
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12887-021-02585-4

Novel ERCC2 variant in trichothiodystrophy infant: the first case report in China
Cited by: 2
Author(s): Jiandong Chen, Wei-Dong Liao, Lingying Wen, Rong-Hua Zhong
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2229-10-157

Identification and structural characterization of FYVE domain-containing proteins of Arabidopsis thaliana
Cited by: 45
Author(s): Ewa Wywiał, Shaneen Singh
Software Mentions: 1
Published: over 14 years ago

10.1186/s12870-021-03105-3

Identification of novel genomic regions associated with nine mineral elements in Chinese winter wheat grain
Cited by: 12
Author(s): Wei Wang, Hong Guo, Chongning Wu, Hui Yu, Xiaokang Li, Guangfeng Chen, Jichun Tian, Zhiying Deng
Software Mentions: 1
Published: over 3 years ago

10.1186/s12870-019-1851-6

Comparative analysis of B-BOX genes and their expression pattern analysis under various treatments in Dendrobium officinale
Cited by: 30
Author(s): Yunpeng Cao, Dong Meng, Yuepeng Han, Tianzhe Chen, Jiao Chen, Yu Chen, Qing Jin, Yongping Cai
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2229-7-39

Arabidopsis Gene Family Profiler (aGFP) – user-oriented transcriptomic database with easy-to-use graphic interface
Cited by: 18
Author(s): Nikoleta Dupľáková, David Reňák, Patrik Hovanec, Barbora Honysová, David Twell, David Honys
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2229-10-133

Comparison of the chloroplast peroxidase system in the chlorophyte Chlamydomonas reinhardtii, the bryophyte Physcomitrella patens, the lycophyte Selaginella moellendorffii and the seed plant Arabidopsis thaliana
Cited by: 44
Author(s): Nicola T. Pitsch, Benjamin Witsch, Margarete Baier
Software Mentions: 1
Published: over 14 years ago

10.1186/s12870-021-02988-6

Genome wide analysis of kinesin gene family in Citrullus lanatus reveals an essential role in early fruit development
Cited by: 5
Author(s): Shujuan Tian, Jiao Jiang, Guo-qi Xu, Wenfeng Tan, Qiyan Liu, Xiner Chen, Man Liu, Yuan Li
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2229-14-126

Characterization of necrosis-inducing NLP proteins in Phytophthora capsici
Cited by: 49
Author(s): Baozhen Feng, Xiaoping Zhu, Li Fu, Rong-Fei Lv, Dylan Storey, Paul W. Tooley, Xiuguo Zhang
Software Mentions: 1
Published: over 10 years ago

10.1186/s12870-020-02617-8

De novo assembly of transcriptome and genome-wide identification reveal GA3 stress-responsive WRKY transcription factors involved in fiber formation in jute (Corchorus capsularis)
Cited by: 11
Author(s): Lilan Zhang, Xuebei Wan, Yi Xu, Sylvain Niyitanga, Jianmin Qi
Software Mentions: 1
Published: about 4 years ago

10.1186/1471-244X-11-141

Dimensionality and scale properties of the Edinburgh Depression Scale (EDS) in patients with type 2 diabetes mellitus: the DiaDDzoB study
Cited by: 25
Author(s): E.S.A. de Cock, Wilco H. M. Emons, Giesje Nefs, Victor J.M. Pop, Frans Pouwer
Software Mentions: 1
Published: about 13 years ago

10.1186/s12890-018-0680-y

NOX4 expression and distal arteriolar remodeling correlate with pulmonary hypertension in COPD
Cited by: 25
Author(s): Xiaoxiao Guo, Yuchun Fan, Jieda Cui, Bin Hao, Ling Zhu, Xiao Fei Sun, Jieyu He, Jiali Yang, Jia Dong, Yanyang Wang, Xiaoming Liu, Juan Chen
Software Mentions: 1
Published: over 6 years ago

10.1186/1756-0500-3-41

Rapid pair-wise synteny analysis of large bacterial genomes using web-based GeneOrder4.0
Cited by: 15
Author(s): Padmanabhan Mahadevan, Donald Seto
Software Mentions: 1
Published: over 14 years ago

10.1186/s13104-021-05644-2

Exiguobacterium sp. is endowed with antibiotic properties against Gram positive and negative bacteria
Cited by: 4
Author(s): Nicole T. Cavanaugh, Anutthaman Parthasarathy, Narayan H. Wong, KayLee K. Steiner, Jonathan Chu, Joseph Adjei, André O. Hudson
Software Mentions: 1
Published: over 3 years ago

10.1186/s12917-019-1952-3

Detection and genetic characteristics of porcine circovirus 3 based on oral fluids from asymptomatic pigs in central China
Cited by: 14
Author(s): Zhenhua Guo, Xiang Li, Ruiguang Deng, Gaiping Zhang
Software Mentions: 1
Published: over 5 years ago

10.1093/bioinformatics/bts397

MetaCluster 5.0: a two-round binning approach for metagenomic data for low-abundance species in a noisy sample
Cited by: 117
Author(s): Wang Yi, Ho-fung Leung, Siu Ming Yiu, Francis Y. L. Chin
Software Mentions: 1
Published: about 12 years ago

10.1186/s13062-017-0191-4

Evidence-based gene models for structural and functional annotations of the oil palm genome
Cited by: 21
Author(s): Kuang‐Lim Chan, Tatiana V. Tatarinova, Rozana Rosli, Nadzirah Amiruddin, Norazah Azizi, Mohd Amin Ab Halim, Nik Shazana Nik Mohd Sanusi, Jayanthi Nagappan, П. М. Пономаренко, Martin Tříska, Victor Solovyev, Mohd Firdaus-Raih, Ravigadevi Sambanthamurthi, Denis J. Murphy, Eng‐Ti Leslie Low
Software Mentions: 1
Published: about 7 years ago

10.1186/s13062-016-0119-4

Conservation and divergence of the histone code in nucleomorphs
Cited by: 10
Author(s): Georgi K. Marinov, Michael Lynch
Software Mentions: 1
Published: over 8 years ago

10.1186/s40659-020-0272-1

The comprehensive detection of miRNA, lncRNA, and circRNA in regulation of mouse melanocyte and skin development
Cited by: 17
Author(s): Zhiwei Zhu, Yan Ma, Yuan Li, Pengfei Li, Zhi-xue Cheng, Huifeng Li, Lihuan Zhang, Zhongwei Tang
Software Mentions: 1
Published: almost 5 years ago