Ecosyste.ms: Papers

10.3390/ijms140612661

Design, Synthesis, Biological Activity and Molecular Dynamics Studies of Specific Protein Tyrosine Phosphatase 1B Inhibitors over SHP-2
Cited by: 7
Author(s): Su-Xia Sun, Xiaobo Li, Wenbo Liu, Ying Ma, Run‐Ling Wang, Xian-Chao Cheng, Shuqing Wang, Wei Liu
Software Mentions: 1
Published: over 11 years ago

10.3390/ijms15057731

Enamel Matrix Derivative Promote Primary Human Pulp Cell Differentiation and Mineralization
Cited by: 7
Author(s): Elisabeth Aurstad Riksen, Maria A. Landin, Sjur Reppe, Y. Nakamura, Ståle Petter Lyngstadaas, Janne Elin Reseland
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms160816966

Molecular Characterization of Bovine SMO Gene and Effects of Its Genetic Variations on Body Size Traits in Qinchuan Cattle (Bos taurus)
Cited by: 6
Author(s): Yaran Zhang, Linsheng Gui, Yao-Kun Li, Bijie Jiang, Hongcheng Wang, Yingying Zhang, Zan Liu
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms161226202

Proteins and Their Interacting Partners: An Introduction to Protein–Ligand Binding Site Prediction Methods
Cited by: 59
Author(s): Daniel B. Roche, Danielle Allison Brackenridge, Liam J. McGuffin
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms17020240

Role of miR-222-3p in c-Src-Mediated Regulation of Osteoclastogenesis
Cited by: 19
Author(s): Shinya Takigawa, Andy Chen, Qiaoqiao Wan, Sungsoo Na, Akihiro Sudo, Hiroki Yokota, Kazunori Hamamura
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms17060966

Expression of Stipa purpurea SpCIPK26 in Arabidopsis thaliana Enhances Salt and Drought Tolerance and Regulates Abscisic Acid Signaling
Cited by: 11
Author(s): Yanli Zhou, Xudong Sun, Yunqiang Yang, Xiong Li, Ying Cheng, Yongping Yang
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms18010060

A Comprehensive Proteomic Survey of ABA-Induced Protein Phosphorylation in Rice (Oryza sativa L.)
Cited by: 28
Author(s): Jian Qiu, Yuxuan Hou, Yifeng Wang, Zhiyong Li, Juan Zhao, Xiaohong Tong, Haiyan Lin, Xiangjin Wei, Hejun Ao, Jian Zhang
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijms18020458

Antibiotic Resistance Determinant-Focused Acinetobacter baumannii Vaccine Designed Using Reverse Vaccinology
Cited by: 50
Author(s): Zhaohui Ni, Yan Chen, Edison Ong, Yongqun He
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijms18040818

Genome-Wide Analyses of the Soybean F-Box Gene Family in Response to Salt Stress
Cited by: 41
Author(s): Qi Jia, Zhixia Xiao, Fuk‐Ling Wong, Song Sun, Kun Liang, Hon‐Ming Lam
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms18112489

Identification and Initial Characterization of the Effectors of an Anther Smut Fungus and Potential Host Target Proteins
Cited by: 13
Author(s): Venkata Swathi Kuppireddy, Vladimir N. Uversky, Su San Toh, Ming‐Chang Tsai, William C. Beckerson, Catarina Cahill, Brittany Carman, Michael H. Perlin
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms19041119

Cytochrome P450 CYP6EV11 in Chironomus kiiensis Larvae Involved in Phenol Stress
Cited by: 4
Author(s): Qihui Zhang, Dong Chu, Lili Sun, Chuanwang Cao
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms19041068

Technological and Genomic Analysis of Roles of the Cell-Envelope Protease PrtS in Yoghurt Starter Development
Cited by: 16
Author(s): Hongping Tian, Bailiang Li, Smith Etareri Evivie, Shuvan Kumar Sarker, Sathi Chowdhury, Jingjing Lu, Ding Xiuyun, Huo Gui-cheng
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms19051324

Quantitative Changes in the Transcription of Phytohormone-Related Genes: Some Transcription Factors Are Major Causes of the Wheat Mutant dmc Not Tillering
Cited by: 21
Author(s): Ruishi He, Yongjing Ni, Junchang Li, Zhixin Jiao, Xin‐Xin Zhu, Yumei Jiang, Qiaoyun Li, Jishan Niu
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms19071969

Identification and Functional Analysis of the psaD Promoter of Chlorella vulgaris Using Heterologous Model Strains
Cited by: 8
Author(s): Jongrae Kim, Linpo Liu, Zhongliang Hu, EonSeon Jin
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms19123868

The Biological Significance and Regulatory Mechanism of c-Myc Binding Protein 1 (MBP-1)
Cited by: 14
Author(s): Zijin Liu, Aileen Zhang, Lamei Zheng, Johnathan Abou‐Fadel, Jun Zhang, Genfa Zhang
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms20061361

Comprehensive Genomic Analysis and Expression Profiling of Diacylglycerol Kinase (DGK) Gene Family in Soybean (Glycine max) under Abiotic Stresses
Cited by: 15
Author(s): Kue Foka Idrice Carther, Toi Ketehouli, Nan Ye, Yanhai Yang, Nan Wang, Yanjun Dong, Na Yao, Xiuming Liu, Weican Liu, Xiaowei Li, Fawei Wang, Haiyan Li
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms20092136

A Survey on Tubulin and Arginine Methyltransferase Families Sheds Light on P. lividus Embryo as Model System for Antiproliferative Drug Development
Cited by: 4
Author(s): Maria Antonietta Ragusa, Aldo Nicosia, Salvatore Costa, Caterina Casano, Fabrizio Gianguzza
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms20092261

A Thermostable Aspergillus fumigatus GH7 Endoglucanase Over-Expressed in Pichia pastoris Stimulates Lignocellulosic Biomass Hydrolysis
Cited by: 25
Author(s): Aline Vianna Bernardi, Deborah Kimie Yonamine, Sérgio Akira Uyemura, Taísa Magnani Dinamarco
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms20133179

Integrated Computational Analysis Highlights unique miRNA Signatures in the Subventricular Zone and Striatum of GM2 Gangliosidosis Animal Models
Cited by: 3
Author(s): Francesco Morena, Vasileios Oikonomou, Chiara Argentati, Martina Bazzucchi, Carla Emiliani, Angela Gritti, Sabata Martino
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms20153780

Formation Mechanism of Ion Channel in Channelrhodopsin-2: Molecular Dynamics Simulation and Steering Molecular Dynamics Simulations
Cited by: 10
Author(s): Ting Yang, Wenying Zhang, Jie Cheng, Yanhong Nie, Xin Qi, Shuai Yuan, Yusheng Dou
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms20174175

FKRR-MVSF: A Fuzzy Kernel Ridge Regression Model for Identifying DNA-Binding Proteins by Multi-View Sequence Features via Chou’s Five-Step Rule
Cited by: 21
Author(s): Yi Zou, Yongsheng Ding, Jijun Tang, Fei Guo, Peng Li
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms20215366

Cordycepin Enhances Radiosensitivity in Oral Squamous Carcinoma Cells by Inducing Autophagy and Apoptosis Through Cell Cycle Arrest
Cited by: 25
Author(s): Sheng Yow Ho, Wun Syuan Wu, Li Lin, Yuan Wu, Hung-Wen Chiu, Ya Ling Yeh, Bu Miin Huang, Ying Jan Wang
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms20225741

SiMYB3 in Foxtail Millet (Setaria italica) Confers Tolerance to Low-Nitrogen Stress by Regulating Root Growth in Transgenic Plants
Cited by: 25
Author(s): Linhao Ge, Yi-Ning Dou, Maomao Li, Pengju Qu, Zhonghu He, Y Liu, Zhao‐Shi Xu, Jun Chen, Ming Chen, Yupo Ma
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms20246249

Deciphering miRNAs’ Action through miRNA Editing
Cited by: 451
Author(s): Marta Correia de Sousa, Monika Gjorgjieva, Dobrochna Dolicka, Cyril Sobolewski, Michelangelo Foti
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms21020670

The Soybean bZIP Transcription Factor Gene GmbZIP2 Confers Drought and Salt Resistances in Transgenic Plants
Cited by: 51
Author(s): Yan Yang, Tong Yu, Jing Ma, Jun Chen, Yongbin Zhou, Ming Chen, You-Zhi Ma, Wenliang Wei, Zhao‐Shi Xu
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms21051774

The Arabidopsis GPI-Anchored LTPg5 Encoded by At3g22600 Has a Role in Resistance against a Diverse Range of Pathogens
Cited by: 7
Author(s): Muhammad Amjad Ali, Amjad Abbas, Farrukh Azeem, Shahzadi Mahpara, Holger Bohlmann
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21062177

Expression Analyses of Soybean VOZ Transcription Factors and the Role of GmVOZ1G in Drought and Salt Stress Tolerance
Cited by: 17
Author(s): Bo Li, Jingwu Zheng, Tingting Wang, Donghong Min, Wenliang Wei, Jun Chen, Yongbin Zhou, Ming Chen, Zhao‐Shi Xu, You-Zhi Ma
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21072437

Diabetes Mellitus and Cardiovascular Risk Assessment in Mothers with a History of Gestational Diabetes Mellitus Based on Postpartal Expression Profile of MicroRNAs Associated with Diabetes Mellitus and Cardiovascular and Cerebrovascular Diseases
Cited by: 37
Author(s): Ilona Hromadníková, Lenka Dvořáková, Ladislav Krofta
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21103515

Peritoneal Fluid Cytokines Reveal New Insights of Endometriosis Subphenotypes
Cited by: 35
Author(s): Jie Zhou, Bernard Chern, Peter Barton-Smith, Jessie Wai Leng Phoon, Tse Yeun Tan, Véronique Viardot-Foucault, Chee Wai Ku, Heng Hao Tan, Jerry Kok Yen Chan, Yie Hou Lee
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21144954

Deep Sequencing of Small RNAs from Neurosurgical Extracellular Vesicles Substantiates miR-486-3p as a Circulating Biomarker that Distinguishes Glioblastoma from Lower-Grade Astrocytoma Patients
Cited by: 22
Author(s): Susannah Hallal, Saeideh Ebrahim Khani, Heng Wei, Maggie Yuk Ting Lee, Hao‐Wen Sim, Joanne Sy, Brindha Shivalingam, Michael E. Buckland, Kimberley Alexander-Kaufman
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21155199

Amyloidogenic Propensities of Ribosomal S1 Proteins: Bioinformatics Screening and Experimental Checking
Cited by: 16
Author(s): Sergei Y. Grishin, Evgenia I. Deryusheva, А. В. Мачулин, Olga M. Selivanova, Anna V. Glyakina, E. Yu. Gorbunova, Leila G. Mustaeva, Vyacheslav N. Azev, Valentina V. Rekstina, Т.С. Калебина, Alexey K. Surin, Oxana V. Galzitskaya
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21155560

PremPRI: Predicting the Effects of Missense Mutations on Protein–RNA Interactions
Cited by: 6
Author(s): Ning Zhang, Haoyu Lu, Yuting Chen, Zefeng Zhu, Qing Yang, Shuqin Wang, Minghui Li
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms22020606

SAAFEC-SEQ: A Sequence-Based Method for Predicting the Effect of Single Point Mutations on Protein Thermodynamic Stability
Cited by: 49
Author(s): Gen Li, Shailesh Kumar Panday, Emil Alexov
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms22052487

OsCBE1, a Substrate Receptor of Cullin4-Based E3 Ubiquitin Ligase, Functions as a Regulator of Abiotic Stress Response and Productivity in Rice
Cited by: 5
Author(s): Juyoung Choi, Won-Kyung Lee, Gynheung An, Seong-Ryong Kim
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22073353

Plasma Membrane H+-ATPase SmPHA4 Negatively Regulates the Biosynthesis of Tanshinones in Salvia miltiorrhiza
Cited by: 2
Author(s): Xiuhong Li, Bin Zhang, Pengda Ma, Ruizhi Cao, Xiaobing Yang, Juane Dong
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22084033

A History of Preterm Delivery Is Associated with Aberrant Postpartal MicroRNA Expression Profiles in Mothers with an Absence of Other Pregnancy-Related Complications
Cited by: 9
Author(s): Ilona Hromadníková, Ladislav Krofta
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22105205

A MADS-Box Gene CiMADS43 Is Involved in Citrus Flowering and Leaf Development through Interaction with CiAGL9
Cited by: 14
Author(s): Li‐Xia Ye, Jinxia Zhang, Xiao-Jin Hou, Mei‐Qi Qiu, Wenfeng Wang, Jinxin Zhang, Chun-Gen Hu, Jinzhi Zhang
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22126414

Genome-Wide Identification of the Nramp Gene Family in Spirodela polyrhiza and Expression Analysis under Cadmium Stress
Cited by: 13
Author(s): Yan Chen, Xuyao Zhao, Gaojie Li, Sunjeet Kumar, Zuoliang Sun, Yixian Li, Wenjun Guo, Jingjing Yang, Hongwei Hou
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22136934

The V-ATPase a3 Subunit: Structure, Function and Therapeutic Potential of an Essential Biomolecule in Osteoclastic Bone Resorption
Cited by: 14
Author(s): Anh Chu, Ralph A Zirngibl, Morris F. Manolson
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms221910834

Identification of Rare LRP5 Variants in a Cohort of Males with Impaired Bone Mass
Cited by: 5
Author(s): Maria Santa Rocca, Giovanni Minervini, Andrea Di Nisio, Maurizio Merico, Maria Bueno Marinas, Luca De Toni, Kalliopi Pilichou, Andrea Garolla, Carlo Foresta, Alberto Ferlin
Software Mentions: 1
Published: about 3 years ago

10.2196/jmir.2425

Use of a Web 2.0 Portal to Improve Education and Communication in Young Patients With Families: Randomized Controlled Trial
Cited by: 58
Author(s): Lena Hanberger, Johnny Ludvigsson, S. Nordfeldt
Software Mentions: 1
Published: over 11 years ago

10.2196/jmir.3933

Virtual Patients on the Semantic Web: A Proof-of-Application Study
Cited by: 25
Author(s): Eleni Dafli, Panagiotis E. Antoniou, Lazaros Ioannidis, Nicholas V. Dombros, David Topps, Panagiotis D. Bamidis
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12984-019-0558-0

Influences of the biofeedback content on robotic post-stroke gait rehabilitation: electromyographic vs joint torque biofeedback
Cited by: 32
Author(s): Federica Tamburella, Juan C. Moreno, Diana Sofía Herrera Valenzuela, Iolanda Pisotta, Marco Iosa, Febo Cincotti, Donatella Mattia, José L. Pons, Marco Molinari
Software Mentions: 1
Published: over 5 years ago

10.1186/s12974-015-0436-z

Epistasis analysis links immune cascades and cerebral amyloidosis
Cited by: 10
Author(s): Andréa Lessa Benedet, Aurélie Labbe, Philippe Lemay, Eduardo R. Zimmer, Tharick A. Pascoal, Antoine Leuzy, Sulantha Mathotaarachchi, Sara Mohades, Monica Shin, Alexandre Dionne‐Laporte, Thomas Beaudry, Cynthia Picard, Serge Gauthier, Judes Poirier, Guy A. Rouleau, Pedro Rosa‐Neto
Software Mentions: 1
Published: almost 9 years ago

10.1136/jnnp-2017-317492

Downregulation of exosomal miR-204-5p and miR-632 as a biomarker for FTD: a GENFI study
Cited by: 37
Author(s): Raphaël Schneider, Paul M. McKeever, TaeHyung Kim, Caroline Graff, John C. van Swieten, Anna Karydas, Adam L. Boxer, Howie Rosen, Bruce L. Miller, Robert Laforce, Daniela Galimberti, Mario Masellis, Barbara Borroni, Zhaolei Zhang, Lorne Zinman, Jonathan D. Rohrer, Maria Carmela Tartaglia, Janice Robertson
Software Mentions: 1
Published: almost 7 years ago

10.1155/2021/9935410

LncRNA SNHG3 Promotes Gastric Cancer Cells Proliferation, Migration, and Invasion by Targeting miR-326
Cited by: 13
Author(s): Jun Rao, Jinjin Fu, Chuchen Meng, Jin Huang, Xiang-Rong Qin, Shaohua Zhuang
Software Mentions: 1
Published: over 3 years ago

10.1186/s13048-020-00689-6

LncRNA CTBP1-AS2 regulates miR-216a/ PTEN to suppress ovarian cancer cell proliferation
Cited by: 10
Author(s): Kaiying Cui, Genhai Zhu
Software Mentions: 1
Published: over 4 years ago

10.1186/1757-2215-7-53

KIFCI, a novel putative prognostic biomarker for ovarian adenocarcinomas: delineating protein interaction networks and signaling circuitries
Cited by: 37
Author(s): Shrikant Pawar, Shashikiran Donthamsetty, Vaishali Pannu, Padmashree C.G. Rida, Angela Ogden, Nathan J. Bowen, Remus Oşan, Guilherme Cantuaria, Ritu Aneja
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.10359

Co-expression modules of NF1, PTEN and sprouty enable distinction of adult diffuse gliomas according to pathway activities of receptor tyrosine kinases
Cited by: 10
Author(s): Wanyu Zhang, Yu-Hong Lv, Yang Xue, Chenxing Wu, Kun Yao, Chuanbao Zhang, Jin Wei Qiang, Rong Huang, Jiuyi Li, Yingyu Sun, Xiao‐Dong Su, Tao Jiang, Xiaolong Fan
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.13860

MED15 overexpression in prostate cancer arises during androgen deprivation therapy via PI3K/mTOR signaling
Cited by: 14
Author(s): Anne Offermann, Ignacija Vlašić, Isabella Syring, Wenzel Vogel, Christian Ruiz, Tobias Zellweger, Cyrill A. Rentsch, Susanne Hagedorn, Jochen Behrends, Michael A. Nowak, Axel S. Merseburger, Lukas Bubendorf, Jutta Kirfel, Stefan Duensing, Zaki Shaikhibrahim
Software Mentions: 1
Published: almost 8 years ago

10.18632/oncotarget.14895

The ribosomal protein gene RPL5 is a haploinsufficient tumor suppressor in multiple cancer types
Cited by: 88
Author(s): Laura Fancello, Kim R. Kampen, Isabel Juliana Hofman, Johan Verbeeck, Kim De Keersmaecker
Software Mentions: 1
Published: almost 8 years ago

10.18632/oncotarget.15038

Beluga whale pVHL enhances HIF-2α activity via inducing HIF-2α proteasomal degradation under hypoxia
Cited by: 3
Author(s): Jianling Bi, Bo Hu, Jing Wang, Xing Liu, Jinsong Zheng, Ding Wang, Wuhan Xiao
Software Mentions: 1
Published: almost 8 years ago

10.18632/oncotarget.18687

Overexpression of stathmin plays a pivotal role in the metastasis of esophageal squamous cell carcinoma
Cited by: 16
Author(s): Gaijing Han, Zongyong Wu, Nan Zhao, Lanping Zhou, Fang Liu, Fangfei Niu, Yang Xu, Xiaohang Zhao
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.19864

Integrated analysis of dosage effect lncRNAs in lung adenocarcinoma based on comprehensive network
Cited by: 17
Author(s): Wei Yin, Zichuang Yan, Cheng Wu, Qiang Zhang, Yuxia Zhu, Kun Li, Yan Xu
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.19960

A RasGAP, DAB2IP, regulates lipid droplet homeostasis by serving as GAP toward RAB40C
Cited by: 12
Author(s): Xiaomin Luo, Chunman Li, Renxiang Tan, Xiaohui Xu, William Ka Kei Wu, Ayano Satoh, Tuanlao Wang, Sidney Yu
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.19379

Inactivation/deficiency of DHODH induces cell cycle arrest and programed cell death in melanoma
Cited by: 26
Author(s): Lichao Liu, Zhen Dong, Qian Lei, Jie Yang, Huanrong Hu, Qian Li, Yacong Ji, Leiyang Guo, Yanli Zhang, Yaling Liu, Hongjuan Cui
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.25632

Integrative landscape of dysregulated signaling pathways of clinically distinct pancreatic cancer subtypes
Cited by: 14
Author(s): Musalula Sinkala, Nicola Mulder, Darren P. Martin
Software Mentions: 1
Published: over 6 years ago

10.1186/s13018-021-02526-y

Circ-SPG11 knockdown hampers IL-1β-induced osteoarthritis progression via targeting miR-337-3p/ADAMTS5
Cited by: 10
Author(s): Yongqiang Liu, Qian Li, Zhida Gao, Lei Fang, Xuefeng Gao
Software Mentions: 1
Published: over 3 years ago

10.1515/biol-2020-0047

LINC00202 promotes retinoblastoma progression by regulating cell proliferation, apoptosis, and aerobic glycolysis through miR-204-5p/HMGCR axis
Cited by: 5
Author(s): Ai-Min Wu, Xin Zhou, Linglong Mi, Jiang Shen
Software Mentions: 1
Published: over 4 years ago

10.1515/biol-2021-0072

Lidocaine has antitumor effect on hepatocellular carcinoma via the circ_DYNC1H1/miR-520a-3p/USP14 axis
Cited by: 5
Author(s): Liu Hua, Jing Cheng, Heng Xu, Zhenzhen Wan
Software Mentions: 1
Published: almost 4 years ago

10.1016/j.yjsbx.2020.100040

SIMPLE 3.0. Stream single-particle cryo-EM analysis in real time
Cited by: 22
Author(s): Joseph Caesar, Cyril Reboul, Chiara Machello, Simon Kiesewetter, Molly L. Tang, Justin C. Deme, Steven Ross Johnson, Dominika Elmlund, Susan M. Lea, Hans Elmlund
Software Mentions: 1
Published: almost 5 years ago

10.1111/os.12706

Long‐Term Clinical Outcomes and Pain Assessment after Posterior Lumbar Interbody Fusion for Recurrent Lumbar Disc Herniation
Cited by: 4
Author(s): Yalin Yang, Yan Xu, Wenhui Li, Wei-Zong Sun, Kai Wang
Software Mentions: 1
Published: over 4 years ago

10.1186/s12967-015-0603-0

Identification of apoptosis-related microRNAs and their target genes in myocardial infarction post-transplantation with skeletal myoblasts
Cited by: 26
Author(s): Qi Liu, Guo Qing Du, Zhi Tao Zhu, Chunyang Zhang, Xiao Wei Sun, Jing Jin Liu, Xia Li, Yong Shun Wang, Wen Du
Software Mentions: 1
Published: over 9 years ago

10.1155/2017/3720128

MicroRNAs and Autophagy: Fine Players in the Control of Chondrocyte Homeostatic Activities in Osteoarthritis
Cited by: 28
Author(s): Stefania D’Adamo, Silvia Cetrullo, Manuela Minguzzi, Ylenia Silvestri, Rosa Maria Borzı̀, Flavio Flamigni
Software Mentions: 1
Published: almost 8 years ago

10.1155/2020/6072380

The Effect of Hedysarum multijugum Maxim.-Chuanxiong rhizoma Compound on Ischemic Stroke: A Research Based on Network and Experimental Pharmacology
Cited by: 23
Author(s): Kailin Yang, Liuting Zeng, Anqi Ge, Yongmei Shi, Xiaofei Zhu, Wenlong Liu, Jinwen Ge
Software Mentions: 1
Published: about 4 years ago

10.1155/2020/1295984

Azelaic Acid Exerts Antileukemia Effects against Acute Myeloid Leukemia by Regulating the Prdxs/ROS Signaling Pathway
Cited by: 10
Author(s): Dongdong Zhang, 志偉 羅, Yifei Jin, Yanling Chen, Tian Yang, Qian Yang, Balu Wu, Yufeng Shang, Xiaoyan Liu, Yongchang Wei, Fuling Zhou
Software Mentions: 1
Published: almost 4 years ago

10.3390/nu11071649

Association between Brain and Plasma Glutamine Levels in Healthy Young Subjects Investigated by MRS and LC/MS
Cited by: 19
Author(s): Yuhei Takado, Naoto Sato, Yuta Kanbe, Moyoko Tomiyasu, Lijing Xin, Jamie Near, Kohki Yoshikawa, Naruhiko Sahara, Tatsuya Higashi, Tetsuya Suhara, Makoto Higuchi, Takayuki Obata
Software Mentions: 1
Published: over 5 years ago

10.3390/nu12123862

Dietary Fiber Intake Alters Gut Microbiota Composition but Does Not Improve Gut Wall Barrier Function in Women with Future Hypertensive Disorders of Pregnancy
Cited by: 11
Author(s): Kate I. Tomsett, Helen L. Barrett, Evelyn E. Dekker, Leonie K. Callaway, David McIntyre, Marloes Dekker Nitert
Software Mentions: 1
Published: almost 4 years ago

10.3390/nu12051267

Beneficial Effects of Time-Restricted Eating on Metabolic Diseases: A Systemic Review and Meta-Analysis
Cited by: 109
Author(s): Shinje Moon, Jiseung Kang, Sang Hyun Kim, Haegeun Chung, Yoonjung Kim, Jae Myung Yu, Sung Tae Cho, Chang‐Myung Oh, Tae Il Kim
Software Mentions: 1
Published: over 4 years ago

10.1186/s13568-021-01212-w

Genome-wide identification of the GATA transcription factor family and their expression patterns under temperature and salt stress in Aspergillus oryzae
Cited by: 12
Author(s): Chunmiao Jiang, Gongbo Lv, Jinxin Ge, Bin He, Zhe Zhang, Zhìhóng Hú, Bin Zeng
Software Mentions: 1
Published: over 3 years ago

10.1186/s40478-021-01166-x

Human alpha-synuclein overexpressing MBP29 mice mimic functional and structural hallmarks of the cerebellar subtype of multiple system atrophy
Cited by: 7
Author(s): Lisa Mészáros, Markus J. Riemenschneider, Heiko Gaßner, Franz Marxreiter, Stephan von Hörsten, Alana Hoffmann, Jürgen Winkler
Software Mentions: 1
Published: over 3 years ago

10.1155/2014/501841

Secondary Structure Preferences of Mn2+ Binding Sites in Bacterial Proteins
Cited by: 8
Author(s): Tatyana Aleksandrovna Khrustaleva
Software Mentions: 1
Published: over 10 years ago

10.1155/2018/6152014

Structural Prediction and Mutational Analysis of Rv3906c Gene of<i> Mycobacterium tuberculosis</i> H₃₇Rv to Determine Its Essentiality in Survival
Cited by: 33
Author(s): Amjad Beg, . Shivangi, Sonu Chand Thakur, Laxman S. Meena
Software Mentions: 1
Published: over 6 years ago

10.18632/aging.103432

Circular RNA circMBOAT2 promotes prostate cancer progression via a miR-1271-5p/mTOR axis
Cited by: 31
Author(s): Juan Shi, Cheng Liu, Changhao Chen, Kaixuan Guo, Zhuang Tang, Yuming Luo, Luping Chen, Yuxin Su, Kecheng Xu
Software Mentions: 1
Published: over 4 years ago

10.18632/aging.202521

Overexpression of hsa_circ_0002874 promotes resistance of non-small cell lung cancer to paclitaxel by modulating miR-1273f/MDM2/p53 pathway
Cited by: 23
Author(s): Jiachao Xu, Liwei Ni, Fu-Jun Zhao, Xingliang Dai, Jing Tao, Jia Hao Pan, Aiming Shi, Zhu Shen, Cunjin Su, Yusong Zhang
Software Mentions: 1
Published: almost 4 years ago

10.1111/acel.12245

Hormone replacement therapy enhances IGF-1 signaling in skeletal muscle by diminishing miR-182 and miR-223 expressions: a study on postmenopausal monozygotic twin pairs
Cited by: 43
Author(s): Fabiola Olivieri, Maarit Ahtiainen, Raffaella Lazzarini, Eija Pöllänen, Miriam Capri, Maria Lorenzi, Gianluca Fulgenzi, Maria Cristina Albertini, Stefano Salvioli, Markku Alén, Urho M. Kujala, Giulia Borghetti, Lucia Babini, Jaakko Kaprio, Sarianna Sipilä, Claudio Franceschi, Vuokko Kovanen, Antonio Domenico Procopio
Software Mentions: 1
Published: over 10 years ago

10.1080/19768354.2018.1443493

Gene microarray analysis revealed a potential crucial gene RACK1 in oral squamous cell carcinoma (OSCC)
Cited by: 7
Author(s): Jianwei Zheng, Yueping Yang, Shujuan Yang, Wei Zhou, Hua‐Ji Qiu, Xiaoping Li, Qing-Qing Cai, Ting Li, Gang Luo
Software Mentions: 1
Published: over 6 years ago

10.1093/aob/mcy136

Segmental and tandem chromosome duplications led to divergent evolution of the<i>chalcone synthase</i>gene family in<i>Phalaenopsis</i>orchids
Cited by: 20
Author(s): Yi Tzu Kuo, Ya-Ting Chao, Wan Chieh Chen, Ming Che Shih, Song Bin Chang
Software Mentions: 1
Published: over 6 years ago

10.1186/2052-4374-25-38

Long Working Hours and Emotional Well-Being in Korean Manufacturing Industry Employees
Cited by: 21
Author(s): Kyoung-Hye Lee, Kim Jong-Eun, Young-Ki Kim, Dongmug Kang, Myeong-Ja Yun, Shin-Goo Park, Jae Seok Song, Sang-Gil Lee
Software Mentions: 1
Published: almost 12 years ago

10.3390/antibiotics9120854

Design, Screening, and Testing of Non-Rational Peptide Libraries with Antimicrobial Activity: In Silico and Experimental Approaches
Cited by: 16
Author(s): Paola Ruiz Puentes, María C. Henao, Carlos E. Torres, Saúl C. Gómez, Laura A. Gómez, Juan C. Burgos, Pablo Arbeláez, Johann F. Osma, Carolina Muñoz-Camargo, Luis H. Reyes, Juan C. Cruz
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13756-016-0137-0

Serious electronic games as behavioural change interventions in healthcare-associated infections and infection prevention and control: a scoping review of the literature and future directions
Cited by: 15
Author(s): Enrique Castro-Sánchez, Yiannis Kyratsis, Michiyo Iwami, Timothy M. Rawson, Alison Holmes
Software Mentions: 1
Published: about 8 years ago

10.1007/s00253-021-11307-w

Microbial methionine transporters and biotechnological applications
Cited by: 8
Author(s): Nurul Amira Mohammad Mohany, Alessandra Totti, Keith R. Naylor, Harald Janovjak
Software Mentions: 1
Published: over 3 years ago

10.1007/s41109-018-0095-y

An application of the Shapley value to the analysis of co-expression networks
Cited by: 9
Author(s): Giulia Cesari, Encarnación Algaba, Stefano Moretti, Juan A. Nepomuceno
Software Mentions: 1
Published: over 6 years ago

10.1186/2046-9063-8-21

Cloning of aquaporin-1 of the blue crab, Callinectes sapidus: its expression during the larval development in hyposalinity
Cited by: 25
Author(s): J. Sook Chung, Leah Maurer, Meagan Bratcher, Joseph S. Pitula, Matthew B. Ogburn
Software Mentions: 1
Published: almost 13 years ago

10.5194/aab-64-147-2021

Detection of genetic variation and activity analysis of the promoter region of the cattle tRNA-modified gene &lt;i&gt;TRDMT1&lt;/i&gt;
Cited by: 1
Author(s): Xiaohua Yi, Shuai He, Shuhui Wang, Hailin Zhao, Mingli Wu, Shirong Liu, Xiuzhu Sun
Software Mentions: 1
Published: over 3 years ago

10.1007/s00203-019-01709-w

Functional analysis of three putative galactofuranosyltransferases with redundant functions in galactofuranosylation in Aspergillus niger
Cited by: 11
Author(s): Mark Arentshorst, Davina de Lange, Joohae Park, Ellen Lagendijk, Ebru Alazi, Cees A. M. J. J. van den Hondel, Arthur F. J. Ram
Software Mentions: 1
Published: over 5 years ago

10.1186/s13075-021-02485-z

Upregulated endonuclease Regnase-1 suppresses osteoarthritis by forming a negative feedback loop of catabolic signaling in chondrocytes
Cited by: 4
Author(s): Jamie O. Yang, Jang‐Soo Chun
Software Mentions: 1
Published: over 3 years ago

10.1186/ar4526

Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation
Cited by: 149
Author(s): Dirk Woetzel, René Huber, Peter Kupfer, Dirk Pohlers, Michael Pfaff, Dominik Driesch, Thomas Häupl, Dirk Koczan, P Stiehl, Reinhard Guthke, Raimund W. Kinne
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12859-016-1070-1

LimiTT: link miRNAs to targets
Cited by: 0
Author(s): Julia Bayer, Carsten Kuenne, Jens Preussner, Mario Looso
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2105-6-38

Cited by: 30
Author(s): Keyue Ding, Jing Zhang, Kaixin Zhou, Yan Shen, Xuegong Zhang
Software Mentions: 1
Published: almost 20 years ago

10.1186/1471-2105-7-82

PhosphoregDB: The tissue and sub-cellular distribution of mammalian protein kinases and phosphatases
Cited by: 18
Author(s): Alistair R.R. Forrest, Darrin Taylor, J. Lynn Fink, Milena Gongora, Cameron Flegg, Rohan D. Teasdale, Harukazu Suzuki, Mutsumi Kanamori, Kai Cui, Yoshihide Hayashizaki, Sean M. Grimmond
Software Mentions: 1
Published: almost 19 years ago

10.1186/s12859-018-2276-1

Efficient computation of motif discovery on Intel Many Integrated Core (MIC) Architecture
Cited by: 8
Author(s): Shaoliang Peng, Minxia Cheng, Kai-Wen Huang, Ying Bo Cui, Zhiqiang Zhang, Runxin Guo, Xiaoyu Zhang, Shaowu Yang, Xiangke Liao, Yutong Lu, Quan Zou, Benyun Shi
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2105-14-52

PREDIVAC: CD4+ T-cell epitope prediction for vaccine design that covers 95% of HLA class II DR protein diversity
Cited by: 55
Author(s): Patricio Oyarzún, Jonathan J. Ellis, Mikael Bodén, Boštjan Kobe
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2105-7-S4-S26

AffyMiner: mining differentially expressed genes and biological knowledge in GeneChip microarray data
Cited by: 5
Author(s): Guoqing Lu, Yuannan Xia, Michael Fromm
Software Mentions: 1
Published: almost 18 years ago

10.1186/s12859-019-2923-1

DDGun: an untrained method for the prediction of protein stability changes upon single and multiple point variations
Cited by: 66
Author(s): Ludovica Montanucci, Emidio Capriotti, Yotam Frank, Nir Ben‐Tal, Piero Fariselli
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2105-14-346

Disulfide by Design 2.0: a web-based tool for disulfide engineering in proteins
Cited by: 330
Author(s): Douglas B. Craig, Alan A. Dombkowski
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12859-015-0660-7

Computing all hybridization networks for multiple binary phylogenetic input trees
Cited by: 11
Author(s): Benjamin Albrecht
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2105-5-165

Cited by: 40
Author(s): Zhining Wang, Mark G. Lewis, Marion M. Nau, Alma Arnold, Maryanne Vahey
Software Mentions: 1
Published: almost 21 years ago

10.1186/1471-2105-11-S1-S10

PostMod: sequence based prediction of kinase-specific phosphorylation sites with indirect relationship
Cited by: 32
Author(s): Inkyung Jung, Akihisa Matsuyama, Minoru Yoshida, Dongsup Kim
Software Mentions: 1
Published: almost 15 years ago

10.1186/1472-6750-9-36

Gene Composer: database software for protein construct design, codon engineering, and gene synthesis
Cited by: 52
Author(s): Don Lorimer, Amy Raymond, John Walchli, Mark B. Mixon, Adrienne Barrow, Ellen Wallace, Rena Grice, Alex B. Burgin, Lance Stewart
Software Mentions: 1
Published: over 15 years ago