Ecosyste.ms: Papers

10.3390/biomedicines9070727

Postnatal Expression Profile of MicroRNAs Associated with Cardiovascular Diseases in 3- to 11-Year-Old Preterm-Born Children
Cited by: 1
Author(s): Ilona Hromadníková, Ladislav Krofta, Jan Širc
Software Mentions: 1
Published: over 3 years ago

10.1186/s12864-017-3503-2

An integrated approach with new strategies for QSAR models and lead optimization
Cited by: 5
Author(s): Hui Hui Hsu, Yen Chao Hsu, Li Chang, Jinn-Moon Yang
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0197348

Antibacterial Effect of (2E,2E)-4,4-Trisulfanediylbis(but-2-enoic acid) against Staphylococcus aureus
Cited by: 5
Author(s): Tao Wu, Yina Huang, Yijun Chen, Min Zhang
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0118227

Molecular Assessment of Mating Strategies in a Population of Atlantic Spotted Dolphins
Cited by: 4
Author(s): Michelle L. Green, Denise L. Herzing, John W. Baldwin
Software Mentions: 1
Published: almost 10 years ago

10.1155/2019/8150523

<i>In Silico</i>Genome-Wide Analysis of the ATP-Binding Cassette Transporter Gene Family in Soybean (<i>Glycine max</i>L.) and Their Expression Profiling
Cited by: 15
Author(s): Awdhesh Kumar Mishra, Jinhee Choi, Muhammad Fazle Rabbee, Kwang-Hyun Baek
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0086210

Isolation and Characterization of a Dominant Dwarf Gene, D-h, in Rice
Cited by: 19
Author(s): Rihua Piao, Sang-Ho Chu, Wenzhu Jiang, Yoye Yu, Yongmei Jin, Mi-Ok Woo, Joohyun Lee, Sunghan Kim, Hee‐Jong Koh
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0176045

Somatic copy number alterations in gastric adenocarcinomas among Asian and Western patients
Cited by: 27
Author(s): Steven E. Schumacher, Byoung Yong Shim, Giovanni Corso, Min‐Hee Ryu, Yoon‐Koo Kang, Franco Roviello, Gordon Saksena, Shouyong Peng, Ramesh A. Shivdasani, Adam J. Bass, Rameen Beroukhim
Software Mentions: 1
Published: over 7 years ago

10.1155/2016/2891810

The Expression of NOX4 in Smooth Muscles of Small Airway Correlates with the Disease Severity of COPD
Cited by: 18
Author(s): Xianyan Liu, Bin Hao, Aiqun Ma, Jieyu He, Xiaoming Liu, Juan Chen
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13075-021-02485-z

Upregulated endonuclease Regnase-1 suppresses osteoarthritis by forming a negative feedback loop of catabolic signaling in chondrocytes
Cited by: 4
Author(s): Jamie O. Yang, Jang‐Soo Chun
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0085343

The Potential Role of As-sumo-1 in the Embryonic Diapause Process and Early Embryo Development of Artemia sinica
Cited by: 13
Author(s): Chu Bing, Feng Yao, Cheng Cheng, Yang Wu, Yanli Mei, Xuejie Li, Yan Liu, Peisheng Wang, Hui Lin, Xiangyang Zou
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0008207

Unconsciously Perceived Fear in Peripheral Vision Alerts the Limbic System: A MEG Study
Cited by: 68
Author(s): Dimitri J. Bayle, Marie‐Anne Hénaff, Pierre Krolak‐Salmon
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0223498

CsBZIP40, a BZIP transcription factor in sweet orange, plays a positive regulatory role in citrus bacterial canker response and tolerance.
Cited by: 18
Author(s): Qiang Li, Ruirui Jia, Wei Dou, Jingjing Qi, Xiujuan Qin, Yongyao Fu, Yongrui He, Shanchun Chen
Software Mentions: 1
Published: almost 6 years ago

10.1155/2021/5542224

Recent Advances in Predicting Protein S-Nitrosylation Sites
Cited by: 4
Author(s): Qinglin Zhao, Jiaqi Ma, Fang Xie, Yu Wang, Yu Zhang, Hui Li, Yuan Sun, Liqi Wang, Mian Guo, Koeun Han
Software Mentions: 1
Published: almost 4 years ago

10.1186/s40659-020-00315-1

LncRNA OIP5-AS1 upregulates snail expression by sponging miR-34a to promote ovarian carcinoma cell invasion and migration
Cited by: 15
Author(s): Xingzhi Jiang, Zhongxue Ye, Yafen Jiang, Weiyang Yu, Fang Qian
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0194792

Comparative genomic and transcriptomic analysis of selected fatty acid biosynthesis genes and CNL disease resistance genes in oil palm
Cited by: 13
Author(s): Rozana Rosli, Nadzirah Amiruddin, Mohd Amin Ab Halim, Pek-Lan Chan, Kuang‐Lim Chan, Norazah Azizi, Priscilla E. Morris, Eng‐Ti Leslie Low, Meilina Ong‐Abdullah, Ravigadevi Sambanthamurthi, Rajinder Singh, Denis J. Murphy
Software Mentions: 1
Published: over 6 years ago

10.1186/s40659-020-0272-1

The comprehensive detection of miRNA, lncRNA, and circRNA in regulation of mouse melanocyte and skin development
Cited by: 17
Author(s): Zhiwei Zhu, Yan Ma, Yuan Li, Pengfei Li, Zhi-xue Cheng, Huifeng Li, Lihuan Zhang, Zhongwei Tang
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0044969

Blue Light Acts as a Double-Edged Sword in Regulating Sexual Development of Hypocrea jecorina (Trichoderma reesei)
Cited by: 40
Author(s): Chia-Ling Chen, Hsiao-Che Kuo, Shu-Yu Tung, Paul Hsu, Chih‐Li Wang, Christian Seibel, Monika Schmoll, Ruey-Shyang Chen
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0164729

Analysis of the Antennal Transcriptome and Insights into Olfactory Genes in Hyphantria cunea (Drury)
Cited by: 36
Author(s): Long-Wa Zhang, Kae Won Kang, Shi-Chang Jiang, Yanan Zhang, Tiantian Wang, Jing Zhang, Long Sun, Yong Yang, Chang-Chun Huang, Liyu Jiang, De-Gui Ding
Software Mentions: 1
Published: about 8 years ago

10.1186/s13062-016-0119-4

Conservation and divergence of the histone code in nucleomorphs
Cited by: 10
Author(s): Georgi K. Marinov, Michael Lynch
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-021-07562-w

Evolutionary research on the expansin protein family during the plant transition to land provides new insights into the development of Tartary buckwheat fruit
Cited by: 6
Author(s): Wenjun Sun, Haomiao Yu, Moyang Liu, Zhaotang Ma, Chi Man Hui
Software Mentions: 1
Published: over 3 years ago

10.1186/s13062-017-0191-4

Evidence-based gene models for structural and functional annotations of the oil palm genome
Cited by: 21
Author(s): Kuang‐Lim Chan, Tatiana V. Tatarinova, Rozana Rosli, Nadzirah Amiruddin, Norazah Azizi, Mohd Amin Ab Halim, Nik Shazana Nik Mohd Sanusi, Jayanthi Nagappan, П. М. Пономаренко, Martin Tříska, Victor Solovyev, Mohd Firdaus-Raih, Ravigadevi Sambanthamurthi, Denis J. Murphy, Eng‐Ti Leslie Low
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0075544

Dynamic Evolution of Rht-1 Homologous Regions in Grass Genomes
Cited by: 3
Author(s): Jing Wu, Xiuying Kong, Chao Shi, Yong–Qiang Gu, Cuiyun Jin, Li‐Zhi Gao, Jizeng Jia
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0018589

Serpin Induced Antiviral Activity of Prostaglandin Synthetase-2 against HIV-1 Replication
Cited by: 37
Author(s): James B. Whitney, Mohammed Asmal, Ralf Geiben-Lynn
Software Mentions: 1
Published: over 13 years ago

10.1093/bioinformatics/bts397

MetaCluster 5.0: a two-round binning approach for metagenomic data for low-abundance species in a noisy sample
Cited by: 117
Author(s): Wang Yi, Ho-fung Leung, Siu Ming Yiu, Francis Y. L. Chin
Software Mentions: 1
Published: about 12 years ago

10.1186/s12864-019-6208-x

Sex- and tissue-specific transcriptome analyses and expression profiling of olfactory-related genes in Ceracris nigricornis Walker (Orthoptera: Acrididae)
Cited by: 10
Author(s): Hao Yuan, Huihui Chang, Lina Zhao, Chao Yang, Yuan Huang
Software Mentions: 1
Published: about 5 years ago

10.1007/s00203-019-01709-w

Functional analysis of three putative galactofuranosyltransferases with redundant functions in galactofuranosylation in Aspergillus niger
Cited by: 11
Author(s): Mark Arentshorst, Davina de Lange, Joohae Park, Ellen Lagendijk, Ebru Alazi, Cees A. M. J. J. van den Hondel, Arthur F. J. Ram
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0063124

Phylogenetic and Evolutionary Analysis of Chinese Leishmania Isolates Based on Multilocus Sequence Typing
Cited by: 32
Author(s): Chunying Zhang, Xiaojun Lu, Xiao-Qing Du, Jun Jian, Ling Shu, Ying Ma
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0078714

Analysis of the Protein Phosphotome of Entamoeba histolytica Reveals an Intricate Phosphorylation Network
Cited by: 10
Author(s): Tamanna Anwar, S. Gourinath
Software Mentions: 1
Published: about 11 years ago

10.1186/s12917-019-1952-3

Detection and genetic characteristics of porcine circovirus 3 based on oral fluids from asymptomatic pigs in central China
Cited by: 14
Author(s): Zhenhua Guo, Xiang Li, Ruiguang Deng, Gaiping Zhang
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0219547

Acute myeloid leukemia immunopeptidome reveals HLA presentation of mutated nucleophosmin
Cited by: 35
Author(s): Rupa Narayan, Niclas Olsson, Lisa E. Wagar, Bruno C. Medeiros, Everett Meyer, Debra K. Czerwinski, Michael S. Khodadoust, Lichao Zhang, Liora Schultz, Mark M. Davis, Joshua E. Elias, Ronald Levy
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-019-5657-6

L-lactate induces specific genome wide alterations of gene expression in cultured bovine granulosa cells
Cited by: 7
Author(s): Anja Baufeld, Dirk Koczan, Jens Vanselow
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0057675

LTR-Retrotransposons in R. exoculata and Other Crustaceans: The Outstanding Success of GalEa-Like Copia Elements
Cited by: 16
Author(s): Mathieu Piednoël, Tifenn Donnart, Caroline Esnault, Paula Graça, Dominique Higuet, Éric Bonnivard
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0162669

Integrated Left Ventricular Global Transcriptome and Proteome Profiling in Human End-Stage Dilated Cardiomyopathy
Cited by: 31
Author(s): Dilek Çolak, Ayodele Alaiya, Namik Kaya, Nzioka P. Muiya, Olfat Al‐Harazi, Zakia Shinwari, Editha Andres, Nduna Dzimiri
Software Mentions: 1
Published: about 8 years ago

10.1186/s13104-021-05644-2

Exiguobacterium sp. is endowed with antibiotic properties against Gram positive and negative bacteria
Cited by: 4
Author(s): Nicole T. Cavanaugh, Anutthaman Parthasarathy, Narayan H. Wong, KayLee K. Steiner, Jonathan Chu, Joseph Adjei, André O. Hudson
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2164-11-611

The genomic underpinnings of apoptosis in the silkworm, Bombyx mori
Cited by: 71
Author(s): Jinye Zhang, Min‐Hui Pan, Zhi-Ya Sun, Suming Huang, Yu Zhang, Di Liu, Di Zhao, Cheng Lü
Software Mentions: 1
Published: about 14 years ago

10.1186/1471-2105-5-165

Cited by: 40
Author(s): Zhining Wang, Mark G. Lewis, Marion M. Nau, Alma Arnold, Maryanne Vahey
Software Mentions: 1
Published: almost 21 years ago

10.1371/journal.pone.0192977

Identification of the S-transferase like superfamily bacillithiol transferases encoded by Bacillus subtilis
Cited by: 7
Author(s): Varahenage R. Perera, John D. Lapek, Gerald L. Newton, David J. Gonzalez, Kit Pogliano
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0236466

Comparison of different calculation techniques for absorbed dose assessment in patient specific peptide receptor radionuclide therapy
Cited by: 8
Author(s): Domenico Finocchiaro, Salvatore Berenato, Valentina Bertolini, Gastone Castellani, Nico Lanconelli, Annibale Versari, Emiliano Spezi, Mauro Iori, Federica Fioroni, Elisa Grassi
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0121065

Identification and Expression Analysis of the Interferon-Induced Protein with Tetratricopeptide Repeats 5 (IFIT5) Gene in Duck (Anas platyrhynchos domesticus)
Cited by: 10
Author(s): Bin Wang, Yang Chen, Chunyu Mu, Yanhui Su, Ran Liu, Zheng Huang, Yang Li, Qian Yu, Guobin Chang, Qi Xu, Guohong Chen
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0181688

Neonates’ responses to repeated exposure to a still face
Cited by: 13
Author(s): Emese Nagy, Karen Pilling, Rachel Watt, Attila Pál, Hajnalka Orvos
Software Mentions: 1
Published: over 7 years ago

10.1186/1756-0500-3-41

Rapid pair-wise synteny analysis of large bacterial genomes using web-based GeneOrder4.0
Cited by: 15
Author(s): Padmanabhan Mahadevan, Donald Seto
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0196993

Automated method to differentiate between native and mirror protein models obtained from contact maps
Cited by: 0
Author(s): Monika Kurczyńska, Małgorzata Kotulska
Software Mentions: 1
Published: over 6 years ago

10.1186/s12890-018-0680-y

NOX4 expression and distal arteriolar remodeling correlate with pulmonary hypertension in COPD
Cited by: 25
Author(s): Xiaoxiao Guo, Yuchun Fan, Jieda Cui, Bin Hao, Ling Zhu, Xiao Fei Sun, Jieyu He, Jiali Yang, Jia Dong, Yanyang Wang, Xiaoming Liu, Juan Chen
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0015060

Genomic Characterization of the Guillain-Barre Syndrome-Associated Campylobacter jejuni ICDCCJ07001 Isolate
Cited by: 26
Author(s): Maojun Zhang, Lihua He, Qun Li, Honghe Sun, Yixin Gu, Yuanhai You, Fanliang Meng, Jianzhong Zhang
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0171355

Impact of genetic variation on three dimensional structure and function of proteins
Cited by: 46
Author(s): Roshni Bhattacharya, Peter W. Rose, S.K. Burley, Andreas Prlić
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-244X-11-141

Dimensionality and scale properties of the Edinburgh Depression Scale (EDS) in patients with type 2 diabetes mellitus: the DiaDDzoB study
Cited by: 25
Author(s): E.S.A. de Cock, Wilco H. M. Emons, Giesje Nefs, Victor J.M. Pop, Frans Pouwer
Software Mentions: 1
Published: about 13 years ago

10.1186/1471-2164-13-390

Computational prediction and validation of C/D, H/ACA and Eh_U3 snoRNAs of Entamoeba histolytica
Cited by: 11
Author(s): Devinder Kaur, Abhishek Kumar Gupta, Vandana Kumari, Rahul Sharma, Alok Bhattacharya, Sudha Bhattacharya
Software Mentions: 1
Published: over 12 years ago

10.5194/aab-64-147-2021

Detection of genetic variation and activity analysis of the promoter region of the cattle tRNA-modified gene &lt;i&gt;TRDMT1&lt;/i&gt;
Cited by: 1
Author(s): Xiaohua Yi, Shuai He, Shuhui Wang, Hailin Zhao, Mingli Wu, Shirong Liu, Xiuzhu Sun
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0142294

Genomic DNA Copy Number Aberrations, Histological Diagnosis, Oral Subsite and Aneuploidy in OPMDs/OSCCs
Cited by: 24
Author(s): Patrizio Castagnola, Gabriele Zoppoli, S Gandolfo, Massimiliano Monticone, Davide Malacarne, Gabriella Cirmena, David Brown, Cinzia Aiello, Massimo E. Maffei, Roberto Luiz Marino, Walter Giaretti, Monica Pentenero
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0196662

Metal cofactor modulated folding and target recognition of HIV-1 NCp7
Cited by: 5
Author(s): Weitong Ren, Dongqing Ji, Xiaoqing Xu
Software Mentions: 1
Published: over 6 years ago

10.1186/s12870-020-02617-8

De novo assembly of transcriptome and genome-wide identification reveal GA3 stress-responsive WRKY transcription factors involved in fiber formation in jute (Corchorus capsularis)
Cited by: 11
Author(s): Lilan Zhang, Xuebei Wan, Yi Xu, Sylvain Niyitanga, Jianmin Qi
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0149682

Contrasting Patterns in the Evolution of Vertebrate MLX Interacting Protein (MLXIP) and MLX Interacting Protein-Like (MLXIPL) Genes
Cited by: 5
Author(s): Parmveer Singh, David M. Irwin
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0031057

An Ensemble Classifier for Eukaryotic Protein Subcellular Location Prediction Using Gene Ontology Categories and Amino Acid Hydrophobicity
Cited by: 56
Author(s): Liqi Li, Yuan Zhang, Lingyun Zou, Changqing Li, Bo Yu, Xiaoqi Zheng, Yue Zhou
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2229-14-126

Characterization of necrosis-inducing NLP proteins in Phytophthora capsici
Cited by: 49
Author(s): Baozhen Feng, Xiaoping Zhu, Li Fu, Rong-Fei Lv, Dylan Storey, Paul W. Tooley, Xiuguo Zhang
Software Mentions: 1
Published: over 10 years ago

10.1186/s12870-021-02988-6

Genome wide analysis of kinesin gene family in Citrullus lanatus reveals an essential role in early fruit development
Cited by: 5
Author(s): Shujuan Tian, Jiao Jiang, Guo-qi Xu, Wenfeng Tan, Qiyan Liu, Xiner Chen, Man Liu, Yuan Li
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0223844

Comparison of HIV-1 Vif and Vpu accessory proteins for delivery of polyepitope constructs harboring Nef, Gp160 and P24 using various cell penetrating peptides
Cited by: 14
Author(s): Kimia Kardani, Atieh Hashemi, Azam Bolhassani
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0044376

Coevolution in RNA Molecules Driven by Selective Constraints: Evidence from 5S rRNA
Cited by: 12
Author(s): Nan Cheng, Yuanhui Mao, Yinggang Shi, Shiheng Tao
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0107249

Genetic Linkage Map Construction and QTL Mapping of Salt Tolerance Traits in Zoysiagrass (Zoysia japonica)
Cited by: 28
Author(s): Hailin Guo, Wanwen Ding, Jingbo Chen, Xuan Chen, Yongqi Zheng, Zhiyong Wang, Jianxiu Liu
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2229-10-133

Comparison of the chloroplast peroxidase system in the chlorophyte Chlamydomonas reinhardtii, the bryophyte Physcomitrella patens, the lycophyte Selaginella moellendorffii and the seed plant Arabidopsis thaliana
Cited by: 44
Author(s): Nicola T. Pitsch, Benjamin Witsch, Margarete Baier
Software Mentions: 1
Published: over 14 years ago

10.1186/s12864-021-07817-6

Genome wide effects of oleic acid on cultured bovine granulosa cells: evidence for the activation of pathways favoring folliculo-luteal transition
Cited by: 7
Author(s): Vengala Rao Yenuganti, Dirk Koczan, Jens Vanselow
Software Mentions: 1
Published: over 3 years ago

10.1186/2046-9063-8-21

Cloning of aquaporin-1 of the blue crab, Callinectes sapidus: its expression during the larval development in hyposalinity
Cited by: 25
Author(s): J. Sook Chung, Leah Maurer, Meagan Bratcher, Joseph S. Pitula, Matthew B. Ogburn
Software Mentions: 1
Published: almost 13 years ago

10.1111/acel.12245

Hormone replacement therapy enhances IGF-1 signaling in skeletal muscle by diminishing miR-182 and miR-223 expressions: a study on postmenopausal monozygotic twin pairs
Cited by: 43
Author(s): Fabiola Olivieri, Maarit Ahtiainen, Raffaella Lazzarini, Eija Pöllänen, Miriam Capri, Maria Lorenzi, Gianluca Fulgenzi, Maria Cristina Albertini, Stefano Salvioli, Markku Alén, Urho M. Kujala, Giulia Borghetti, Lucia Babini, Jaakko Kaprio, Sarianna Sipilä, Claudio Franceschi, Vuokko Kovanen, Antonio Domenico Procopio
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pntd.0004216

Molecular Characterization of a Novel Family of Trypanosoma cruzi Surface Membrane Proteins (TcSMP) Involved in Mammalian Host Cell Invasion
Cited by: 33
Author(s): Nadini Oliveira Martins, Renato T. Souza, Esteban Cordero, Danielle Cortez Maldonado, Cristian Cortéz, Marjorie Mendes Marini, Éden Ramalho Ferreira, Ethel Bayer-Santos, Igor C. Almeida, Nobuko Yoshida, José Franco da Silveira
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pntd.0004998

Analgesic Effect of Photobiomodulation on Bothrops Moojeni Venom-Induced Hyperalgesia: A Mechanism Dependent on Neuronal Inhibition, Cytokines and Kinin Receptors Modulation
Cited by: 22
Author(s): Nikele Nadur-Andrade, Camila S. Dale, Victória Regina da Silva Oliveira, Elaine F. Toniolo, Regiane dos Santos Feliciano, José António Pereira da Silva, Stella Regina Zamunér
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pntd.0009105

Sialotranscriptomics of the argasid tick Ornithodoros moubata along the trophogonic cycle
Cited by: 15
Author(s): Ana Oleaga, Beatriz Soriano, Carlos Lloréns, Ricardo Pérez–Sánchez
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pntd.0006047

Ecological niche modeling and distribution of Ornithodoros hermsi associated with tick-borne relapsing fever in western North America
Cited by: 31
Author(s): Kylie M. Sage, Tammi L. Johnson, Mike B. Teglas, Nathan C. Nieto, Tom G. Schwan
Software Mentions: 1
Published: about 7 years ago

10.1186/s12863-019-0738-8

Genome-wide identification and expression analysis of HSP90 gene family in Nicotiana tabacum
Cited by: 22
Author(s): Zhiwei Song, Feilong Pan, Chao Yang, Hao Jia, Jiang Houlong, Fan He, Li NaJia, Xiaochong Lu, Hongying Zhang
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pntd.0000410

Brugia malayi Excreted/Secreted Proteins at the Host/Parasite Interface: Stage- and Gender-Specific Proteomic Profiling
Cited by: 184
Author(s): Sasisekhar Bennuru, Roshanak Tolouei Semnani, Zhaojing Meng, José M. C. Ribeiro, Timothy D. Veenstra, Thomas B. Nutman
Software Mentions: 1
Published: over 15 years ago

10.1186/1471-2229-7-39

Arabidopsis Gene Family Profiler (aGFP) – user-oriented transcriptomic database with easy-to-use graphic interface
Cited by: 18
Author(s): Nikoleta Dupľáková, David Reňák, Patrik Hovanec, Barbora Honysová, David Twell, David Honys
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2156-13-74

Characterization of bovine FUT7 furthers understanding of FUT7 evolution in mammals
Cited by: 2
Author(s): Benoît Laporte, Daniel Petit, Dominique Rocha, Mekki Boussaha, Cécile Grohs, Abderrahman Maftah, Jean‐Michel Petit
Software Mentions: 1
Published: over 12 years ago

10.1186/s12870-019-1851-6

Comparative analysis of B-BOX genes and their expression pattern analysis under various treatments in Dendrobium officinale
Cited by: 30
Author(s): Yunpeng Cao, Dong Meng, Yuepeng Han, Tianzhe Chen, Jiao Chen, Yu Chen, Qing Jin, Yongping Cai
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pgen.1000391

Turnover of Sex Chromosomes in the Stickleback Fishes (Gasterosteidae)
Cited by: 236
Author(s): Joseph A. Ross, James R. Urton, Jessica L. Boland, Michael D. Shapiro, Catherine L. Peichel
Software Mentions: 1
Published: almost 16 years ago

10.1186/s12870-021-03105-3

Identification of novel genomic regions associated with nine mineral elements in Chinese winter wheat grain
Cited by: 12
Author(s): Wei Wang, Hong Guo, Chongning Wu, Hui Yu, Xiaokang Li, Guangfeng Chen, Jichun Tian, Zhiying Deng
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2156-10-85

Assessing the utility of whole-genome amplified serum DNA for array-based high throughput genotyping
Cited by: 6
Author(s): Kristine L. Bucasas, Gagan A. Pandya, Sonal Pradhan, Robert Fleischmann, Scott N. Peterson, John W. Belmont
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pgen.1002756

G Protein Activation without a GEF in the Plant Kingdom
Cited by: 110
Author(s): Daisuke Urano, Janice C. Jones, Hao Wang, Melissa M. Matthews, William Bradford, Jeffrey L. Bennetzen, Alan M. Jones
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2229-10-157

Identification and structural characterization of FYVE domain-containing proteins of Arabidopsis thaliana
Cited by: 45
Author(s): Ewa Wywiał, Shaneen Singh
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2156-14-113

Construction of high-density genetic linkage maps for orange-spotted grouper Epinephelus coioidesusing multiplexed shotgun genotyping
Cited by: 39
Author(s): Xinxin You, Liping Shu, Shuisheng Li, Jieming Chen, Jian Luo, Jun Lü, Qian Mu, Jie Bai, Qiuju Xia, Qingchun Chen, Yanjie Cai, Haifa Zhang, Guohua Chen, Haoran Lin, Yong Zhang, Qiong Shi
Software Mentions: 1
Published: almost 11 years ago

10.1007/s41109-018-0095-y

An application of the Shapley value to the analysis of co-expression networks
Cited by: 9
Author(s): Giulia Cesari, Encarnación Algaba, Stefano Moretti, Juan A. Nepomuceno
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pgen.1003357

Pax6 Regulates Gene Expression in the Vertebrate Lens through miR-204
Cited by: 82
Author(s): Ohad Shaham, Karen Gueta, Eyal Mor, Pazit Oren-Giladi, Dina Grinberg, Qing Xie, Aleš Cvekl, Noam Shomron, N S Davis, Maya Keydar-Prizant, S. Raviv, Metsada Pasmanik‐Chor, Rachel E. Bell, Carmit Levy, Raffaella Avellino, Sandro Banfi, Iván Conte, Ruth Ashery‐Padan
Software Mentions: 1
Published: over 11 years ago

10.1186/s12887-021-02585-4

Novel ERCC2 variant in trichothiodystrophy infant: the first case report in China
Cited by: 2
Author(s): Jiandong Chen, Wei-Dong Liao, Lingying Wen, Rong-Hua Zhong
Software Mentions: 1
Published: over 3 years ago

10.1186/s12886-020-01783-5

Detection of active and inactive phases of thyroid-associated ophthalmopathy using deep convolutional neural network
Cited by: 24
Author(s): Chen-Yi Lin, Xuefei Song, Lunhao Li, Yinwei Li, Mengda Jiang, Rou Sun, Huifang Zhou, Xianqun Fan
Software Mentions: 1
Published: almost 4 years ago

10.1186/1471-2156-15-7

A genome-wide scan for signatures of selection in Chinese indigenous and commercial pig breeds
Cited by: 59
Author(s): Songbai Yang, Xiuling Li, Kui Li, Bin Fan, Zhonglin Tang
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pgen.1002869

Comparative Analysis of the Genomes of Two Field Isolates of the Rice Blast Fungus Magnaporthe oryzae
Cited by: 158
Author(s): Minfeng Xue, Jun Yang, Zhigang Li, Songnian Hu, Nan Yao, Ralph A. Dean, Wensheng Zhao, Mi Shen, Haiwang Zhang, Chao Li, Liyuan Liu, Lei Cao, Xiaowen Xu, Yan Xing, Tom Hsiang, Ziding Zhang, Jin‐Rong Xu, You-Liang Peng
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pgen.1008047

The dynamin-like protein Fzl promotes thylakoid fusion and resistance to light stress in Chlamydomonas reinhardtii
Cited by: 30
Author(s): Justin Findinier, Cédric Delevoye, Mickaël M. Cohen
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2202-9-84

Detecting functional magnetic resonance imaging activation in white matter: Interhemispheric transfer across the corpus callosum
Cited by: 51
Author(s): Erin L. Mazerolle, Ryan C.N. D’Arcy, Steven Beyea
Software Mentions: 1
Published: about 16 years ago

10.1186/s12876-021-01869-4

Characterization of TGFβ-associated molecular features and drug responses in gastrointestinal adenocarcinoma
Cited by: 5
Author(s): Qiaofeng Zhang, Furong Liu, Lu Qin, Zhibin Liao, Jia Song, Huifang Liang, Xiaoping Chen, Zhanguo Zhang, Bixiang Zhang
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pcbi.1005123

Improved Measures of Integrated Information
Cited by: 95
Author(s): Max Tegmark
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pcbi.1009334

An integrated framework for building trustworthy data-driven epidemiological models: Application to the COVID-19 outbreak in New York City
Cited by: 13
Author(s): Sheng Zhang, Joan Ponce, Zhen Zhang, Guang Lin, George Em Karniadakis
Software Mentions: 1
Published: about 3 years ago

10.1186/s12883-019-1400-9

Recurrent risk of ischemic stroke due to Vertebrobasilar Dolichoectasia
Cited by: 17
Author(s): Zhaoyao Chen, Shuai Zhang, Zhengze Dai, Xi Cheng, Minghua Wu, Qiliang Dai, Xinfeng Liu, Gelin Xu
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1005717

Domain-based prediction of the human isoform interactome provides insights into the functional impact of alternative splicing
Cited by: 29
Author(s): Mohamed Ali Ghadie, L. Lambourne, Marc Vidal, Yu Xia
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pcbi.1004656

The siRNA Non-seed Region and Its Target Sequences Are Auxiliary Determinants of Off-Target Effects
Cited by: 45
Author(s): Piotr J. Kamola, Yuko Nakano, Tomoko Takahashi, P. David Wilson, Kumiko Ui-Tei
Software Mentions: 1
Published: almost 9 years ago

10.1186/1471-2474-8-12

Gene expression analysis in human osteoblasts exposed to dexamethasone identifies altered developmental pathways as putative drivers of osteoporosis
Cited by: 82
Author(s): Conor Hurson, Joseph S. Butler, D. Keating, David Murray, Denise Sadlier, J. O’Byrne, Peter Doran
Software Mentions: 1
Published: almost 18 years ago

10.1371/journal.pcbi.1009048

GCSENet: A GCN, CNN and SENet ensemble model for microRNA-disease association prediction
Cited by: 10
Author(s): Lisheng Zhong, Kaiyancheng Jiang, Shengwei Qin, Yijun Zhong, Arne Elofsson
Software Mentions: 1
Published: over 3 years ago

10.1186/s12860-020-00258-1

Characterization of the interactions between Codanin-1 and C15Orf41, two proteins implicated in congenital dyserythropoietic anemia type I disease
Cited by: 10
Author(s): Grace Swickley, Yehoshua Bloch, Lidor Malka, Adi Meiri, Sharon Noy-Lotan, Amiel Yanai, Hannah Tamary, Benny Motro
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pcbi.1008193

NuSeT: A deep learning tool for reliably separating and analyzing crowded cells
Cited by: 62
Author(s): L. Yang, Rajarshi P. Ghosh, James Franklin, Simon Chen, Chenyu You, Raja R. Narayan, Marc L. Melcher, Jan Liphardt
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pcbi.1007001

Beyond core object recognition: Recurrent processes account for object recognition under occlusion
Cited by: 61
Author(s): Karim Rajaei, Yalda Mohsenzadeh, Reza Ebrahimpour, Seyed‐Mahdi Khaligh‐Razavi
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2199-12-44

Cis-regulatory functions of overlapping HIF-1alpha/E-box/AP-1-like sequences of CD164
Cited by: 8
Author(s): Jingqun Tang, Zhaohui Luo, Guangqian Zhou, Chao Song, Fenglei Yu, Juanjuan Xiang, Gang Li
Software Mentions: 1
Published: about 13 years ago

10.1186/s12862-015-0295-3

Growth in fossil and extant deer and implications for body size and life history evolution
Cited by: 44
Author(s): Christian Kolb, Torsten M. Scheyer, Adrian M. Lister, Concepción Azorit, John de Vos, Margaretha A J Schlingemann, Gertrud E. Rößner, Nigel T. Monaghan, Marcelo R. Sánchez‐Villagra
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12859-015-0660-7

Computing all hybridization networks for multiple binary phylogenetic input trees
Cited by: 11
Author(s): Benjamin Albrecht
Software Mentions: 1
Published: over 9 years ago

10.1007/s00253-021-11307-w

Microbial methionine transporters and biotechnological applications
Cited by: 8
Author(s): Nurul Amira Mohammad Mohany, Alessandra Totti, Keith R. Naylor, Harald Janovjak
Software Mentions: 1
Published: over 3 years ago