Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: 0

https://packages.ecosyste.ms/registries/pypi.org/packages/0

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Latest release: almost 7 years ago
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Papers Mentioning 0 1,265

10.1098/rsta.2019.0056
Exascale applications: skin in the game
Cited by: 51
Author(s): Francis J. Alexander, Ann S. Almgren, John B. Bell, A. Bhattacharjee, Jacqueline Chen, P. Colella, David Daniel, Jack Deslippe, Lori Freitag Diachin, Erik W. Draeger, Anshu Dubey, Thom H. Dunning, Thomas M. Evans, Ian Foster, Marianne M. François, Timothy C. Germann, Mark S. Gordon, Salman Habib, Mahantesh Halappanavar, Steven P. Hamilton, William E. Hart, Zhenyu Huang, Aimee L. Hungerford, Daniel Kasen, Paul Kent, Tzanio Kolev, Douglas B. Kothe, A. S. Kronfeld, Ye Luo, Paul B. Mackenzie, David McCallen, O. E. Bronson Messer, Susan M. Mniszewski, Chris Oehmen, A. Perazzo, Danny Pérez, David F. Richards, William J. Rider, Robert N. Rieben, Kenneth J. Roche, A. Siegel, Michael Sprague, Carl I. Steefel, Rick Stevens, Madhava Syamlal, Mark A. Taylor, John A. Turner, Jean‐Luc Vay, Artur F Voter, Theresa L. Windus, Katherine Yelick
Software Mentions: 3
Published: over 4 years ago
10.1002/advs.201800640
MaxMIF: A New Method for Identifying Cancer Driver Genes through Effective Data Integration
Cited by: 24
Author(s): Yingnan Hou, Bo Gao, Guojun Li, Zhengchang Su
Software Mentions: 3
Published: almost 6 years ago
10.1186/1743-422X-8-285
Cellular transcriptional profiling in human lung epithelial cells infected by different subtypes of influenza A viruses reveals an overall down-regulation of the host p53 pathway
Cited by: 38
Author(s): Benjamin Terrier, Laurence Josset, Julien Textoris, Virginie Marcel, Gaëlle Cartet, Olivier Ferraris, Catherine Nguyen, Bruno Lina, Jean‐Jacques Diaz, Jean-Christophe Bourdon, Manuel Rosa‐Calatrava
Software Mentions: 3
Published: almost 13 years ago
10.3390/v7031454
Interaction Research on the Antiviral Molecule Dufulin Targeting on Southern Rice Black Streaked Dwarf Virus P9-1 Nonstructural Protein
Cited by: 23
Author(s): Zhenchao Wang, Xiangyang Li, Wenli Wang, Weiying Zhang, Yu Lu, Deyu Hu, Baoan Song
Software Mentions: 3
Published: about 9 years ago
10.3390/pathogens9010026
Phylogenomic Analysis of Two Co-Circulating Canine Distemper Virus Lineages in Colombia
Cited by: 6
Author(s): July Duque-Valencia, Francisco J. Díaz, Julián Ruíz-Sáenz
Software Mentions: 3
Published: over 4 years ago
10.3389/fimmu.2018.00912
Discrimination Between Human Leukocyte Antigen Class I-Bound and Co-Purified HIV-Derived Peptides in Immunopeptidomics Workflows
Cited by: 38
Author(s): Thomas Partridge, Annalisa Nicastri, Anna E. Kliszczak, L M Yindom, Benedikt M. Kessler, Nicola Ternette, Persephone Borrow
Software Mentions: 3
Published: about 6 years ago
10.3390/molecules26030645
Volatile Organic Compounds, Bacterial Airway Microbiome, Spirometry and Exercise Performance of Patients after Surgical Repair of Congenital Diaphragmatic Hernia
Cited by: 0
Author(s): Gert Warncke, Georg Singer, Jana Windhaber, Lukas Schabl, Elena Friehs, Wolfram Miekisch, Peter Gierschner, Ingeborg Klymiuk, Ernst Eber, Katarina Zeder, Andreas Pfleger, Beate Obermüller, Holger Till, Christoph Castellani
Software Mentions: 3
Published: over 3 years ago
10.3389/fmicb.2016.01342
Leisingera sp. JC1, a Bacterial Isolate from Hawaiian Bobtail Squid Eggs, Produces Indigoidine and Differentially Inhibits Vibrios
Cited by: 55
Author(s): Samantha M. Gromek, Andrea M. Suria, Matthew S. Fullmer, Jillian L. Garcia, J. Peter Gogarten, Spencer V. Nyholm, Marcy J. Balunas
Software Mentions: 3
Published: over 7 years ago
10.3389/fimmu.2021.722293
Precision N-Glycoproteomic Profiling of Murine Peritoneal Macrophages After Different Stimulations
Cited by: 2
Author(s): Lujie Yang, Tianqi Gong, Huali Shen, Jiangnan Pei, Lei Zhang, Quanqing Zhang, Yuanyu Huang, Zuojian Hu, Ziyue Pan, Pengyuan Yang, Gang Li, Hongxiu Yu
Software Mentions: 3
Published: almost 3 years ago
10.1074/mcp.RA119.001791
Large-scale Identification of N-linked Intact Glycopeptides in Human Serum using HILIC Enrichment and Spectral Library Search
Cited by: 35
Author(s): Qingbo Shu, Mengjie Li, Lian Shu, Zhiwu An, Jifeng Wang, Hao Lv, Ming Yang, Tao Cai, Tony Hu, Yan Fu, Fuquan Yang
Software Mentions: 3
Published: about 4 years ago
10.3390/molecules20069977
DockBench: An Integrated Informatic Platform Bridging the Gap between the Robust Validation of Docking Protocols and Virtual Screening Simulations
Cited by: 39
Author(s): Alberto Cuzzolin, Mattia Sturlese, Ivana Malvacio, Antonella Ciancetta, Stefano Moro
Software Mentions: 3
Published: almost 9 years ago
10.3389/fmicb.2020.02078
Delineating the Immuno-Dominant Antigenic Vaccine Peptides Against gacS-Sensor Kinase in Acinetobacter baumannii: An in silico Investigational Approach
Cited by: 10
Author(s): A. S. Smiline Girija
Software Mentions: 3
Published: over 3 years ago
10.3390/biom10040509
The Influence of Varying Fluorination Patterns on the Thermodynamics and Kinetics of Benzenesulfonamide Binding to Human Carbonic Anhydrase II
Cited by: 7
Author(s): Steffen Glöckner, K. Ngo, Björn Wagner, A. Heine, G. Klebe
Software Mentions: 3
Published: about 4 years ago
10.3389/fimmu.2021.721030
Pan-Cancer Analysis of PARP1 Alterations as Biomarkers in the Prediction of Immunotherapeutic Effects and the Association of Its Expression Levels and Immunotherapy Signatures
Cited by: 29
Author(s): Xinke Zhang, Yingying Wang, Abdulrahim Gari, Chunhua Qu, Jiewei Chen
Software Mentions: 3
Published: over 2 years ago
10.3390/vaccines2030515
Peptide Vaccine: Progress and Challenges
Cited by: 479
Author(s): Weidang Li, Medha Joshi, Smita Singhania, Kyle H. Ramsey, Ashlesh K. Murthy
Software Mentions: 3
Published: almost 10 years ago
10.1371/journal.pntd.0000258
On the Extent and Origins of Genic Novelty in the Phylum Nematoda
Cited by: 69
Author(s): James D. Wasmuth, Ralf Schmid, Ann Hedley, Mark Blaxter
Software Mentions: 3
Published: almost 16 years ago
10.1371/journal.pone.0248886
Detection of new drivers of frequent B-cell lymphoid neoplasms using an integrated analysis of whole genomes
Cited by: 11
Author(s): Adrián Mosquera Orgueira, Roi Ferreiro Ferro, José Ángel Díaz Arias, Cristina Santos, Beatriz Antelo Rodríguez, Laura Bao Pérez, Natalia Alonso Vence, Ággeles Bendaña López, Ayelén Melisa Blanco, Paula Melero Valentín, And Res Peleteiro Raindo, Marcos Pérez López, Manuel Mateo Pérez Encinas, Marta Sonia González Pérez, Marianela Rodríguez, José Luis Bello López
Software Mentions: 3
Published: about 3 years ago
10.1371/journal.pone.0079612
Comparative Transcriptome Analysis of Salivary Glands of Two Populations of Rice Brown Planthopper, Nilaparvata lugens, That Differ in Virulence
Cited by: 74
Author(s): Rui Ji, Haixin Yu, Qiang Fu, Hongdan Chen, Wenfeng Ye, Shaohui Li, Yonggen Lou
Software Mentions: 3
Published: over 10 years ago
10.1099/mgen.0.000175
Use of genomics to design a diagnostic assay to discriminate between Streptococcus pneumoniae and Streptococcus pseudopneumoniae
Cited by: 8
Author(s): Matthew A. Croxen, Tracy D. Lee, Robert Azana, Linda Hoang
Software Mentions: 3
Published: almost 6 years ago
10.1016/j.molcel.2019.07.022
Structures of Respiratory Supercomplex I+III2 Reveal Functional and Conformational Crosstalk
Cited by: 140
Author(s): James A. Letts, Karol Fiedorczuk, Gianluca Degliesposti, Mark Skehel, L.A. Sazanov
Software Mentions: 3
Published: over 4 years ago
10.3389/fgene.2021.737598
Editorial: Predicting High-Risk Individuals for Common Diseases Using Multi-Omics and Epidemiological Data
Cited by: 1
Author(s): Debajyoti Chowdhury, Xin Zhou, Bailiang Li, Yuanwei Zhang, William K. Cheung, Aiping Lü, Lu Zhang
Software Mentions: 3
Published: almost 3 years ago
10.3389/fimmu.2019.01015
Targeting Mutated Plus Germline Epitopes Confers Pre-clinical Efficacy of an Instantly Formulated Cancer Nano-Vaccine
Cited by: 34
Author(s): Mona O. Mohsen, Monique Vogel, Carsten Riether, Julius Müller, Silvia Salatino, Nicola Ternette, Ariane Gomes, Gustavo Cabral-Miranda, Aadil El-Turabi, Christiane Ruedl, Thomas M. Kündig, Said Dermime, Alexander Knuth, Daniel E. Speiser, Martin F. Bachmann
Software Mentions: 3
Published: about 5 years ago
10.1371/journal.ppat.1008216
Novel RNA viruses associated with Plasmodium vivax in human malaria and Leucocytozoon parasites in avian disease
Cited by: 52
Author(s): Justine Charon, Matthew J. Grigg, John Sebastian Eden, Kim A. Piera, Hafsa Rana, Timothy William, Karrie Rose, Miles P. Davenport, Nicholas M. Anstey, Edward C. Holmes
Software Mentions: 3
Published: over 4 years ago
10.1186/s12859-020-03617-z
Large-scale prediction and analysis of protein sub-mitochondrial localization with DeepMito
Cited by: 7
Author(s): Castrense Savojardo, Pier Luigi Martelli, Gabriele Tartari, Rita Casadio
Software Mentions: 2
Published: over 3 years ago
10.3390/biomedicines9080981
HMP-S7 Is a Novel Anti-Leukemic Peptide Discovered from Human Milk
Cited by: 5
Author(s): Wararat Chiangjong, Jirawan Panachan, Thitinee Vanichapol, Nutkridta Pongsakul, Pongpak Pongphitcha, Teerapong Siriboonpiputtana, Tassanee Lerksuthirat, Pracha Nuntnarumit, Sarayut Supapannachart, Chantragan Srisomsap, Jisnuson Svasti, Suradej Hongeng, Somchai Chutipongtanate
Software Mentions: 2
Published: almost 3 years ago
10.3389/fgene.2021.619950
New Insights Into Mitochondrial DNA Reconstruction and Variant Detection in Ancient Samples
Cited by: 4
Author(s): Maria Angela Diroma, Alessandra Modi, Martina Lari, Luca Sìneo, David Caramelli, Stefania Vai
Software Mentions: 2
Published: about 3 years ago
10.3389/fcell.2021.727762
Ferroptosis Driver SOCS1 and Suppressor FTH1 Independently Correlate With M1 and M2 Macrophage Infiltration in Head and Neck Squamous Cell Carcinoma
Cited by: 20
Author(s): Zhangwei Hu, Yihui Wen, Rong Ma, Lin Chen, Xue‐Lan Zeng, Wang Wen, Wei Sun
Software Mentions: 2
Published: over 2 years ago
10.1140/epjc/s10052-017-4984-5
Measurement of double-differential cross sections for top quark pair production in pp collisions at $$\sqrt{s} = 8$$ s = 8 $$\,\text {TeV}$$ TeV and impact on parton distribution functions
Cited by: 36
Author(s): A. M. Sirunyan, A. Tumasyan, W. Adam, E. Asilar, T. Bergauer, J. Brandstetter, E. Brondolin, M. Dragicevic, J. Erö, M. Flechl, M. Friedl, R. Frühwirth, V. M. Ghete, C. Hartl, N. Hörmann, J. Hrubec, M. Jeitler, A. C. König, I. Krätschmer, D. Liko, T. Matsushita, I. Mikulec, D. Rabady, N. Rad, B. Rahbaran, H. Rohringer, J. Schieck, J. Strauss, W. Waltenberger, C.-E. Wulz, O. Dvornikov, В. Макаренко, V. Mossolov, J. Suarez Gonzalez, V. Zykunov, N. Shumeiko, S. Alderweireldt, E. A. De Wolf, X. Janssen, J. Lauwers, M. Van De Klundert, H. Van Haevermaet, P. Van Mechelen, N. Van Remortel, A. Van Spilbeeck, S. Abu Zeid, F. Blekman, J. D’Hondt, N. Daci, I. De Bruyn, K. Deroover, S. Lowette, S. Moortgat, L. Moreels, A. Olbrechts, Q. Python, K. Skovpen, S. Tavernier, W. Van Doninck, P. Van Mulders, I. Van Parijs, H. Brun, B. Clerbaux, G. De Lentdecker, H. Delannoy, G. Fasanella, L. Favart, R. Goldouzian, A. Grebenyuk, G. Karapostoli, T. Lenzi, A. Léonard, J. Luetic, T. Maerschalk, A. Marinov, A. Randle-Conde, T. Ševa, C. Vander Velde, P. Vanlaer, D. Vannerom, R. Yonamine, F. Zenoni, F. Zhang, T. Cornelis, D. Dobur, A. Fagot, M. Gul, I. Khvastunov, D. Poyraz, S. Salva, R. Schöfbeck, M. Tytgat, W. Van Driessche, E. Yazgan, N. Zaganidis, H. Bakhshiansohi, O. Bondu, S. Brochet, G. E. Bruno, A. Caudron, S. De Visscher, C. Delaere, M. Delcourt, B. Francois, A. Giammanco, A. Jafari, M. Komm, G. Krintiras, V. Lemaı̂tre, A. Magitteri, A. Mertens, M. Musich, K. Piotrzkowski, L. Quertenmont, M. Selvaggi, M. Vidal Marono, S. Wertz, N. Beliy, W. L. Aldá Júnior, F. L. Alves, G. A. Alves, L. Brito, C. Hensel, A. Moraes, M. E. Pol, P. Rebello Teles, E. Belchior Batista Das Chagas, W. Carvalho, J. Chinellato, A. Custódio, E. M. Da Costa, G. G. Da Silveira, D. De Jesus Damiao, C. De Oliveira Martins, S. Fonseca De Souza, L. M. Huertas Guativa, H. Malbouisson, D. Matos Figueiredo, C. Mora Herrera, L. Mundim, H. Nogima, W. L. Prado Da Silva, A. Santoro, A. Sznajder, E. J. Tonelli Manganote, F. Torres Da Silva De Araujo, A. Vilela Pereira, S. Ahuja, C. A. Bernardes, S. Dogra, T. R. Fernandez Perez Tomei, E. M. Gregores, P. G. Mercadante, C. S. Moon, S. F. Novaes, Sandra S. Padula, D. Romero Abad, J. C. Ruiz Vargas, А. Александров, R. Hadjiiska, P. Iaydjiev, M. Rodozov, S. Stoykova, G. Sultanov, M. Vutova, A. Dimitrov, I. Glushkov, L. Litov, B. Pavlov, P. Petkov, W. Fang, M. Ahmad, J. G. Bian, G. M. Chen, H. S. Chen, M. Chen, Y. Chen, T. Cheng, C. H. Jiang, D. Leggat, Z. Liu, F. Romeo, Manqi Ruan, S. M. Shaheen, A. Spiezia, J. Tao, C. Wang, Z. Wang, H. Zhang, J. Zhao, Y. Ban, G. Chen, Q. Li, S. Liu, Y. Mao, S. J. Qian, D. Wang, Z. Xu, C. Ávila, A. Cabrera, L. F. Chaparro Sierra, C. Florez, J. Piedra Gomez, C. F. Gonźalez Herńandez, J. D. Ruiz Alvarez, J. C. Sanabria, N. Godinović, D. Lelas, I. Puljak, P. M. Ribeiro Cipriano, T. Sculac, Ž. Antunović, M. Kovac, V. Brigljević, D. Ferenček, K. Kadija, B. Mesic, T. Šuša, M. W. Ather, A. Attikis, G. Mavromanolakis, J. Mousa, C. Nicolaou, F. Ptochos, P. A. Razis, H. Rykaczewski, М. Фингер, М. Фингер, E. Carrera Jarrin, A. Ellithi Kamel, M. A. Mahmoud, A. Radi, M. Kadastik, L. Perrini, M. Raidal, A. Tiko, C. Veelken, P. Eerola, J. Pekkanen, M. Voutilainen, J. Härkönen, T. Järvinen, V. Karimäki, R. Kinnunen, T. Lampén, K. Lassila-Perini, S. Lehti, T. Lindén, P. Luukka, J. Tuominiemi, E. Tuovinen, L. Wendland, J. Talvitie, T. Tuuva, M. Besançon, F. Couderc, M. Déjardin, D. Denegri, B. Fabbro, J. L. Faure, C. Favaro, F. Ferri, S. Ganjour, S. Ghosh, A. Givernaud, P. Gras, G. Hamel de Monchenault, P. Jarry, I. Kucher, E. Locci, M. Machet, J. Malclès, J. Rander, A. Rosowsky, M. Titov, A. Abdulsalam, I. Antropov, S. Baffioni, F. Beaudette, P. Busson, L. Cadamuro, É. Chapon, C. Charlot, O. Davignon, R. Granier de Cassagnac, M. Jo, S. Lisniak, P. Miné, M. Nguyen, C. Ochando, G. Ortona, P. Paganini, P. Pigard, S. Regnard, R. Salerno, Y. Sirois, A. G. Stahl Leiton, T. Strebler, Y. Yilmaz, A. Zabi, A. Zghiche, J.-L. Agram, J. Andreä, D. Blöch, J.-M. Brom, M. Buttignol, E. C. Chabert, N. Chanon, C. Collard, E. Conte, X. Coubez, J.-C. Fontaine, D. Gelé, U. Goerlach, A.-C. Le Bihan, P. Van Hove, S. Gadrat, S. Beauceron, C. Bernet, G. Boudoul, C. A. Carrillo Montoya, R. Chierici, D. Contardo, B. Courbon, P. Depasse, H. El Mamouni, J. Fay, L. Finco, S. Gascon, M. Gouzevitch, G. Grenier, B. Ille, F. Lagarde, I. B. Laktineh, M. Lethuillier, L. Mirabito, A. L. Pequegnot, S. Perriès, A. Popov, V. Sordini, M. Vander Donckt, P. Verdier, S. Viret, A. Khvedelidze, D. Lomidze, C. Autermann, S. Beranek, L. Felď, M. K. Kiesel, K. Klein, M. Lipiński, M. Preuten, C. Schomakers, J. Schulz, T. Verlage, A. Albert, M. Brodski, E. Dietz-Laursonn, D. Duchardt, M. Endres, M. Erdmann, S. Erdweg, T. Esch, R. Fischer, A. Güth, M. Hamer, T. Hebbeker, C. Heidemann, K. Höepfner, S. Knutzen, M. Merschmeyer, A. Meyer, P. Millet, S. Mukherjee, M. Olschewski, K. Padeken, T. Pook, M. Radziej, H. Reithler, M. Rieger, F. Scheuch, L. Sonnenschein, D. Teyssier, S. Thüer, V. Cherepanov, G. Flügge, B. Kargoll, T. Kress, A. Künsken, J. Lingemann, Th. Müller, A. Nehrkorn, A. Nowack, C. Pistone, O. Pooth, A. Stahl, M. Aldaya Martin, T. Arndt, C. Asawatangtrakuldee, K. Beernaert, O. Behnke, U. Behrens, A. A. Bin Anuar, K. Borras, A. Campbell, P. Connor, C. Contreras-Campana, F. Costanza, C. Diez Pardos, G. Dolinska, G. Eckerlin, D. Eckstein, T. Eichhorn, E. Eren, E. Gallo, J. Garay Garcia, A. Geiser, A. Gizhko, J. M. Grados Luyando, A. Grohsjean, P. Gunnellini, A. Harb, J. Hauk, M. Hempel, H. Jung, A. Kalogeropoulos, O. Karacheban, M. Kasemann, J. Keaveney, C. Kleinwort, Ie. Korol, D. Krücker, W. Lange, A. Lelek, T. Lenz, J. Leonard, K. Lipka, A. Lobanov, W. Lohmann, R. Mankel, I.-A. Melzer-Pellmann, A. Meyer, G. Mittag, J. Mnich, A. Mussgiller, D. Pitzl, R. Plačakytė, A. Raspereza, B. Roland, M. Ö. Sahin, P. Saxena, T. Schöerner-Sadenius, S. Spannagel, N. Stefaniuk, G. P. Van Onsem, R. Walsh, C. Wissing, O. Zenaiev, V. Blobel, M. Centis Vignali, A. R. Draeger, T. Dreyer, E. Garutti, D. Gonzalez, J. Haller, M. Hoffmann, A. Junkes, R. Klanner, R. Kogler, N. Kovalchuk, S. Kurz, T. Lapsien, I. Marchesini, D. Marconi, M. Meyer, M. Niedziela, D. Nowatschin, F. Pantaleo, T. Peiffer, A. Perieanu, C. Scharf, P. Schleper, A. Schmidt, Steffen Schumann, J. Schwandt, J. Sonneveld, H. Stadie, G. Steinbrück, F. M. Stober, M. Stöver, H. Tholen, D. Troendle, E. Usai, L. Vanelderen, A. Vanhoefer, B. Vormwald, M. Akbiyik, C. Barth, S. Baur, C. Baus, J. Berger, E. Butz, R. Caspart, T. Chwalek, F. Colombo, W. De Boer, A. Dierlamm, Simon Fink, B. Freund, R. Friese, M. Giffels, A. Gilbert, P. Goldenzweig, D. Haitz, F. Hartmann, S. M. Heindl, U. Husemann, F. Kassel, I. Katkov, S. Kudella, H. Mildner, M. U. Mozer, Th. Müller, M. Plagge, G. Quast, K. Rabbertz, S. Röcker, Frank Roscher, M. Schröder, I. Shvetsov, G. Sieber, H. J. Simonis, R. Ulrich, S. Wayand, M. Weber, T. Weiler, S. Williamson, C. Wöhrmann, R. Wolf, G. Anagnostou, G. Daskalakis, T. Geralis, V. A. Giakoumopoulou, A. Kyriakis, D. Loukas, I. Topsis-Giotis, S. Kesisoglou, A. Panagiotou, N. Saoulidou, E. Tziaferi, K. Kousouris, I. Evangelou, G. Flouris, C. Foudas, P. Kokkas, N. Loukas, N. Manthos, I. Papadopoulos, E. Paradas, N. Filipović, G. Pásżtor, G. Bencze, C. Hajdú, D. Horváth, F. Siklér, V. Veszprémi, G. Vesztergombi, A. J. Zsigmond, N. Béni, S. Czellár, J. Karancsi, A. Makovec, J. Molnár, Z. Szillási, M. Bartók, P. Raics, Z. L. Trocsanyi, B. Ujvári, J. R. Komaragiri, S. Bahinipati, S. Bhowmik, S. Choudhury, P. Mal, K. Mandal, A. Nayak, Deepak Kumar Sahoo, N. Sahoo, S. Swain, S. Bansal, S. B. Beri, V. Bhatnagar, R. Chawla, U. Bhawandeep, A. K. Kalsi, A. Kaur, M. Kaur, R. Kumar, P. Kumari, A. Mehta, M. Mittal, J. B. Singh, G. Walia, Ashok Kumar, A. Bhardwaj, B. C. Choudhary, R. B. Garg, S. Keshri, Ashish Kumar, S. Malhotra, M. Naimuddin, K. Ranjan, R. Sharma, V. Sharma, R. Bhattacharya, S. Bhattacharya, K. Chatterjee, S. Dey, S. Dutt, S. Dutta, S. Ghosh, N. Majumdar, A. Modak, K. Mondal, Supratik Mukhopadhyay, S. Nandan, A. Purohit, A. Roy, D. Roy, S. Roy Chowdhury, S. Sarkar, M. Sharan, S. Thakur, P. K. Behera, R. Chudasama, D. Dutta, V. Jha, V. Kumar, A. K. Mohanty, P. K. Netrakanti, L. M. Pant, P. Shukla, A. Topkar, T. Aziz, S. Dugad, G. Kole, B. Mahakud, S. Mitra, G. B. Mohanty, B. Parida, N. Sur, B. Sutar, S. Banerjee, R. K. Dewanjee, S. Ganguly, M. Guchait, Sa. Jain, Sanjeev Kumar, M. Maity, G. Majumder, K. Mazumdar, T. Sarkar, N. Wickramage, S. Chauhan, S. Dubé, V. Hegde, A. Kapoor, K. Kothekar, S. Pandey, A. Rane, S. Sharma, S. Chenarani, E. Eskandari Tadavani, S. M. Etesami, M. Khakzad, M. Mohammadi Najafabadi, M. Naseri, S. Paktinat Mehdiabadi, F. Rezaei Hosseinabadi, B. Safarzadeh, M. Zeinali, M. Felcini, M. Grünewald, M. Abbrescia, C. Calabria, C. Caputo, A. Colaleo, D. Creanza, L. Cristella, N. De Filippis, M. De Palma, L. Fiore, G. Iaselli, G. Mäggi, M. Maggi, G. 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Al-bataineh, P. Baringer, A. Bean, S. Boren, J. Bowen, J. Castle, L. Forthomme, S. Khalil, A. Kropivnitskaya, D. Majumder, W. Mcbrayer, M. Murray, S. Sanders, R. Stringer, J. D. Tapia Takaki, Q. Wang, A. Ivanov, K. Kaadze, Y. Maravin, A. Mohammadi, L. K. Saini, N. Skhirtladze, S. Toda, F. Rebassoo, D. Wright, C. Anelli, A. Baden, O. Baron, A. Belloni, B. Calvert, S. C. Eno, C. Ferraioli, J. A. Gomez, N. J. Hadley, S. Jabeen, G. Y. Jeng, R. G. Kellogg, J. Kunkle, A. C. Mignerey, F. Ricci-Tam, Y. H. Shin, A. Skuja, M. B. Tonjes, S. C. Tonwar, D. Abercrombie, B. Allen, A. Apyan, V. Azzolini, R. Barbieri, A. Baty, R. Bi, K. Bierwagen, S. Brandt, W. Busza, I. A. Cali, M. D’Alfonso, Z. Demiragli, G. Gomez Ceballos, M. Goncharov, D. Hsu, Y. Iiyama, G. M. Innocenti, M. Klute, D. Kovalskyi, K. Krajczár, Y. S. Lai, Y.-J. Lee, A. Levin, P. D. Luckey, B. Maier, A. C. Marini, C. Mcginn, C. Mironov, S. Narayanan, X. Niu, C. Paus, C. Roland, G. Roland, J. Salfeld-Nebgen, G. S. F. Stephans, K. Tatar, D. Velicanu, J. Wang, T. W. Wang, B. Wysłouch, A. C. Benvenuti, Rajdeep Mohan Chatterjee, A. Evans, Peter Hansen, S. Kalafut, S. C. Kao, Y. Kubota, Z. Lesko, J. Mans, S. Nourbakhsh, N. Ruckstuhl, R. Rusack, N. Tambe, J. Turkewitz, J. G. Acosta, S. Oliveros, E. Avdeeva, K. Bloom, D. R. Claes, C. Fangmeier, R. Gonzalez Suarez, R. Kamalieddin, I. Kravchenko, A. Malta Rodrigues, J. Monroy, Joaquin Emilo Siado, G. R. Snow, B. Stieger, M. Alyari, J. Dolen, A. Godshalk, C. Harrington, I. Iashvili, J. Kaisen, D. Nguyen, Andy Parker, S. Rappoccio, B. Roozbahani, G. Hamel de Monchenault, E. Barberis, A. Hortiangtham, A. Massironi, D. M. Morse, D. Nash, T. Orimoto, R. Teixeira De Lima, D. Trocino, R.-J. Wang, D. Wood, S. Bhattacharya, O. Charaf, K. A. Hahn, N. Mucia, N. Odell, B. Pollack, Michael Henry Schmitt, K. Sung, M. Trovato, M. Velasco, N. Dev, M. Hildreth, K. Hurtado Anampa, C. Jessop, Daniel John Karmgard, N. Kellams, K. Lannon, N. Marinelli, F. Meng, C. Mueller, Y. Musienko, M. Planer, A. Reinsvold, R. Ruchti, N. Rupprecht, G. Smith, S. Taroni, M. Wayne, M. Wolf, A. Woodard, J. Alimena, L. Antonelli, B. Bylsma, Lloyd Stanley Durkin, S. Flowers, B. Francis, A. Hart, C. Hill, W. Ji, B. Liu, W. Luo, D. Puigh, B. L. Winer, H. W. Wulsin, S. Cooperstein, O. Driga, P. Elmer, J. Hardenbrook, P. Hebda, D. Lange, J. Luo, D. Marlow, T. Medvedeva, K. Mei, I. Ojalvo, J. Olsen, C. Palmer, P. Piroué, D. Stickland, A. Svyatkovskiy, C. Tully, S. Malik, A. Barker, V. E. Barnes, S. Folgueras, L. Gutay, M. K. Jha, M. Jones, A. W. Jung, A. Khatiwada, D. H. Miller, N. Neumeister, J. F. Schulte, X. Shi, J. Sun, F. Wang, W. Xie, N. Parashar, J. Stupak, A. Adair, B. Akgün, Z. Chen, K. M. Ecklund, F. J. M. Geurts, M. Guilbaud, W. Li, B. Michlin, M. Northup, B. P. Padley, R. Schöfbeck, J. Rorie, Z. Tu, J. Zabel, B. Betchart, A. Bodek, P. de Barbaro, R. Démina, Y. t. Duh, T. Ferbel, M. Galanti, A. García-Bellido, J. Han, O. Hindrichs, A. Khukhunaishvili, K. H. Lo, P. Tan, M. Verzetti, A. Agapitos, J. P. Chou, Y. Gershtein, T. A. Gómez Espinosa, E. Halkiadakis, M. Heindl, E. W. Hughes, S. Kaplan, R. Kunnawalkam Elayavalli, S. Kyriacou, A. Lath, R. Montalvo, K. Nash, M. Osherson, H. Saka, S. Salur, S. Schnetzer, D. Sheffield, S. Somalwar, R. Stone, S. Thomas, P. Thomassen, M. Walker, A. G. Delannoy, M. Foerster, J. Heideman, G. Riley, K. Rose, S. Spanier, K. Thapa, O. Bouhali, A. Çelik, M. Dalchenko, M. De Mattia, A. Delgado, S. Dildick, R. Eusebi, J. Gilmore, Tao Huang, E. Juska, T. Kamon, R. Mueller, Y. Pakhotin, R. Patel, A. Perloff, L. Perniè, D. Rathjens, A. Safonov, A. Tatarinov, K. A. Ulmer, N. Akchurin, J. Damgov, F. De Guio, C. Dragoiu, P. R. Dudero, J. Faulkner, E. Gurpinar, S. Kunori, K. Lamichhane, S. W. Lee, T. Libeiro, T. Peltola, S. Undleeb, I. Volobouev, Z. Wang, S. Greene, A. Gurrola, R. Janjam, W. Johns, C. Maguire, A. Melo, H. Ni, P. Sheldon, S. Tuo, J. Velkovska, Q. H. Xu, M. W. Arenton, P. Barria, B. Cox, R. Hirosky, A. Ledovskoy, H. Li, C. Neu, T. Sinthuprasith, X. Sun, Y. Wang, E. Wolfe, F. Xia, Christopher Clarke, R. Harr, P. E. Karchin, J. Sturdy, S. Zaleski, D. A. Belknap, J. Buchanan, C. Caillol, S. Dasu, L. Dodd, S. Đurić, B. Gomber, M. Grothe, M. Herndon, A. Hervé, U. Hussain, P. Klabbers, A. Lanaro, A. Levine, K. Long, R. Loveless, G. A. Pierro, G. Polese, T. Ruggles, A. Savin, N. Smith, W. H. Smith, D. Taylor, N. Woods
Software Mentions: 2
Published: almost 7 years ago
10.1007/s00259-021-05371-7
Radiomics and gene expression profile to characterise the disease and predict outcome in patients with lung cancer
Cited by: 39
Author(s): Margarita Kirienko, Martina Sollini, Marinella Corbetta, Emanuele Voulaz, Noemi Gozzi, Matteo Interlenghi, Francesca Gallivanone, Isabella Castiglioni, Rosanna Asselta, Stefano Duga, Giulia Soldà, Arturo Chiti
Software Mentions: 2
Published: about 3 years ago
10.1111/eva.12128
Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon ( <i>Oncorhynchus tshawytscha</i> )
Cited by: 180
Author(s): Wesley A. Larson, Lisa W. Seeb, Meredith V. Everett, Ryan K. Waples, William D. Templin, James E. Seeb
Software Mentions: 2
Published: over 10 years ago
10.1002/ece3.6028
Boreal predator co‐occurrences reveal shared use of seismic lines in a working landscape
Cited by: 19
Author(s): Erin R. Tattersall, Joanna M. Burgar, Jason T. Fisher, A. Cole Burton
Software Mentions: 2
Published: over 4 years ago
10.1016/j.bbamcr.2020.118675
The diversity of ACBD proteins – From lipid binding to protein modulators and organelle tethers
Cited by: 26
Author(s): Markus Islinger, Joseph L. Costello, Suzan Kors, Eric Soupène, Timothy P. Levine, Frans A. Kuypers, Michael Schrader
Software Mentions: 2
Published: about 4 years ago
10.1002/advs.201800420
Fluorination‐Enhanced Ambient Stability and Electronic Tolerance of Black Phosphorus Quantum Dots
Cited by: 65
Author(s): Xian Tang, Hong Chen, Joice Sophia Ponraj, Sathish Chander Dhanabalan, Qiang Xiao, Dianyuan Fan, Han Zhang
Software Mentions: 2
Published: almost 6 years ago
10.1002/ece3.5034
Upward elevation and northwest range shifts for alpine <i>Meconopsis</i> species in the Himalaya–Hengduan Mountains region
Cited by: 41
Author(s): Xie He, Kevin S. Burgess, Xuefei Yang, Antje Ahrends, Lian‐Ming Gao, Li D
Software Mentions: 2
Published: about 5 years ago
10.1038/s42003-020-01184-w
Structural studies reveal flexible roof of active site responsible for ω-transaminase CrmG overcoming by-product inhibition
Cited by: 8
Author(s): Jinxin Xu, Xiaowen Tang, Yiguang Zhu, Zhijun Yu, Kai Su, Yulong Zhang, Dong Yu, Weiming Zhu, Changsheng Zhang, Ruibo Wu, Jinsong Liu
Software Mentions: 2
Published: almost 4 years ago
10.1186/s12917-015-0612-5
Development and validation of an indirect ELISA as a confirmatory test for surveillance of infectious bovine rhinotracheitis in vaccinated herds
Cited by: 14
Author(s): Luigi Bertolotti, Elvira Muratore, Chiara Nogarol, Claudio Caruso, Laura Lucchese, Margherita Profiti, Laura Anfossi, Loretta Masoero, S. Nardelli, Sergio Rosati
Software Mentions: 2
Published: over 8 years ago
10.1186/s12918-017-0504-3
CPredictor3.0: detecting protein complexes from PPI networks with expression data and functional annotations
Cited by: 13
Author(s): Ying Xu, Jiaogen Zhou, Shuigeng Zhou, Jihong Guan
Software Mentions: 2
Published: over 6 years ago
10.1186/s12014-020-09290-x
Using phosphoproteomics data to understand cellular signaling: a comprehensive guide to bioinformatics resources
Cited by: 25
Author(s): Sara R. Savage, Bing Zhang
Software Mentions: 2
Published: almost 4 years ago
10.1155/2020/8852258
Identification and Classification of Enhancers Using Dimension Reduction Technique and Recurrent Neural Network
Cited by: 8
Author(s): Qingwen Li, Lei Xu, Qingyuan Li, Lichao Zhang
Software Mentions: 2
Published: over 3 years ago
10.1186/s12864-015-1442-3
Transcriptome characterization of three wild Chinese Vitis uncovers a large number of distinct disease related genes
Cited by: 20
Author(s): Chen Jiao, Min Gao, Xiping Wang, Zhangjun Fei
Software Mentions: 2
Published: about 9 years ago
10.1186/s13104-020-05152-9
Cloning and promoter analysis of palladin 90-kDa, 140-kDa, and 200-kDa isoforms involved in skeletal muscle cell maturation
Cited by: 1
Author(s): Boimpoundi Eunice Flavie Ouali, Tzu Yu Liu, Chia‐Wen Lu, Pei Yuan Cheng, Chao Li Huang, Chun Chun Li, Yu Chung Chiang, Hao Ven Wang
Software Mentions: 2
Published: almost 4 years ago
10.3390/cells9020355
Impaired Nuclear Export of the Ribonucleoprotein Complex and Virus-Induced Cytotoxicity Combine to Restrict Propagation of the A/Duck/Malaysia/02/2001 (H9N2) Virus in Human Airway Cells
Cited by: 2
Author(s): Sriram Kumar, David Yeo, Nisha Muralidharan, Soak Kuan Lai, Cathlyn Tong, Boon Huan Tan, Richard J. Sugrue
Software Mentions: 2
Published: over 4 years ago
10.1186/1471-2105-11-S6-S15
Next generation models for storage and representation of microbial biological annotation
Cited by: 8
Author(s): Daniel J. Quest, Miriam Land, Thomas Brettin, Robert W. Cottingham
Software Mentions: 2
Published: over 13 years ago
10.1186/2047-783X-19-31
RETRACTED ARTICLE: Reanalysis of the gene expression profile in chronic pancreatitis via bioinformatics methods
Cited by: 4
Author(s): Hang Yuan, Bin Wu, Shumei Ma, Xiaoyu Yang, Yin Li, Aijun Li
Software Mentions: 2
Published: almost 10 years ago
10.3390/cells8040298
miR-1306 Mediates the Feedback Regulation of the TGF-β/SMAD Signaling Pathway in Granulosa Cells
Cited by: 22
Author(s): Liu Yang, Xiaohong Du, Lu Liu, Qiuyu Cao, Zengxiang Pan, Qifa Li
Software Mentions: 2
Published: about 5 years ago
10.3390/cells1041029
A Novel Type III Endosome Transmembrane Protein, TEMP
Cited by: 1
Author(s): Rajith Aturaliya, Markus C. Kerr, Rohan D. Teasdale
Software Mentions: 2
Published: over 11 years ago
10.1016/j.csbj.2020.05.002
Coarse-grained (hybrid) integrative modeling of biomolecular interactions
Cited by: 17
Author(s): Jorge Roel‐Touris, Alexandre Bonvin
Software Mentions: 2
Published: over 4 years ago
10.1186/1471-2164-15-843
In silico analysis of the core signaling proteome from the barley powdery mildew pathogen (Blumeria graminis f.sp. hordei)
Cited by: 32
Author(s): Stefan Kusch, Nahal Ahmadinejad, Ralph Panstruga, Harald Kühn
Software Mentions: 2
Published: over 9 years ago
10.1038/s41420-021-00413-3
The oncogene Mct-1 promotes progression of hepatocellular carcinoma via enhancement of Yap-mediated cell proliferation
Cited by: 1
Author(s): Wenjie Yang, Yicheng Ni, Shuguang Yang, Jicheng Yang, Xiaopei Yang, Feng Cheng, Xuehao Wang, Feng Zhang, Jianhua Rao
Software Mentions: 2
Published: about 3 years ago
10.1111/acel.12499
Changes in the expression of splicing factor transcripts and variations in alternative splicing are associated with lifespan in mice and humans
Cited by: 69
Author(s): Benjamin P. Lee, Luke C. Pilling, Florence Emond, Kevin Flurkey, David E. Harrison, Rong Yuan, Luanne L. Peters, George A. Kuchel, Luigi Ferrucci, David Melzer, Lorna W. Harries
Software Mentions: 2
Published: almost 8 years ago
10.1186/1471-2105-7-12
Utilization of two sample t-test statistics from redundant probe sets to evaluate different probe set algorithms in GeneChip studies
Cited by: 13
Author(s): Zihua Hu, Gail R. Willsky
Software Mentions: 2
Published: over 18 years ago
10.1038/s41421-021-00259-0
Structure of the full-length human Pannexin1 channel and insights into its role in pyroptosis
Cited by: 11
Author(s): Sensen Zhang, Baolei Yuan, Jordy Homing Lam, Jun Zhou, Xuan Zhou, Gerardo Ramos‐Mandujano, Xin‐Xia Tian, Yang Liu, Han Ren, Li Yu, Xin Gao, Maojun Yang
Software Mentions: 2
Published: about 3 years ago
10.1186/s12870-016-0882-5
Comprehensive analysis and discovery of drought-related NAC transcription factors in common bean
Cited by: 34
Author(s): Jing Wu, Lanfen Wang, Shumin Wang
Software Mentions: 2
Published: over 7 years ago
10.3390/biom11081193
The Identification of Zinc-Finger Protein 433 as a Possible Prognostic Biomarker for Clear-Cell Renal Cell Carcinoma
Cited by: 6
Author(s): Simone O. Heyliger, Karam F.A. Soliman, Marilyn D. Saulsbury, R. Renee Reams
Software Mentions: 2
Published: almost 3 years ago
10.1186/s12870-020-02742-4
Sequencing and analysis of gerbera daisy leaf transcriptomes reveal disease resistance and susceptibility genes differentially expressed and associated with powdery mildew resistance
Cited by: 10
Author(s): Krishna Bhattarai, Ana Conesa, Shaobo Xiao, Natália A. Peres, David G. Clark, Saroj Parajuli, Zhanao Deng
Software Mentions: 2
Published: over 3 years ago
10.1186/s12870-020-02651-6
Comprehensive analysis of the Ppatg3 mutant reveals that autophagy plays important roles in gametophore senescence in Physcomitrella patens
Cited by: 6
Author(s): Zexi Chen, Wenbo Wang, Xiaojun Pu, Xueyi Dong, Bei Gao, Ping Li, Yulin Jia, Aizhong Liu, Li Liu
Software Mentions: 2
Published: over 3 years ago
10.1186/s12870-020-2329-2
Characterization of the Gh4CL gene family reveals a role of Gh4CL7 in drought tolerance
Cited by: 30
Author(s): Jie Sun, Xingjiang Xiong, Xiaoli Zhang, Hongjie Feng, Qian Zhu, Yanjun Li
Software Mentions: 2
Published: about 4 years ago
10.1371/journal.pone.0247841
Comprehensive in silico analysis and molecular dynamics of the superoxide dismutase 1 (SOD1) variants related to amyotrophic lateral sclerosis
Cited by: 20
Author(s): Gabriel Rodrigues Coutinho Pereira, Bárbara de Azevedo Abrahim Vieira, Joelma Freire De Mesquita
Software Mentions: 2
Published: about 3 years ago
10.1371/journal.pone.0020085
OrthoList: A Compendium of C. elegans Genes with Human Orthologs
Cited by: 375
Author(s): Daniel D. Shaye, Iva Greenwald
Software Mentions: 2
Published: almost 13 years ago
10.1186/s12859-021-04337-8
A globally diverse reference alignment and panel for imputation of mitochondrial DNA variants
Cited by: 7
Author(s): Tim W McInerney, Brian Fulton-Howard, Christopher Patterson, Devashi Paliwal, Lars S. Jermiin, Hardip R. Patel, Judy Pa, Russell H. Swerdlow, Alison M. Goate, Simon Easteal, Shea J. Andrews
Software Mentions: 2
Published: over 2 years ago
10.1186/1471-2431-13-17
Optimising Ankle Foot Orthoses for children with Cerebral Palsy walking with excessive knee flexion to improve their mobility and participation; protocol of the AFO-CP study
Cited by: 14
Author(s): Yvette L. Kerkum, Jaap Harlaar, Annemieke I. Buizer, Josien C. van den Noort, Jules G. Becher, Merel-Anne Brehm
Software Mentions: 2
Published: over 11 years ago
10.1371/journal.pone.0046084
Assessing Predictors of Changes in Protein Stability upon Mutation Using Self-Consistency
Cited by: 87
Author(s): Grant Thiltgen, Richard A. Goldstein
Software Mentions: 2
Published: over 11 years ago
10.1371/journal.pone.0238784
Expression characteristics and regulatory mechanism of Apela gene in liver of chicken (Gallus gallus)
Cited by: 4
Author(s): Wenbo Tan, Hua Zheng, Dandan Wang, Fangyuan Tian, Hong Li, Xiaojun Liu
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0250018
Agricultural co-operatives participating in supply chain integration in China: A qualitative comparative analysis
Cited by: 10
Author(s): Jiacheng Zhang, Jianli Luo, Li Jia
Software Mentions: 2
Published: about 3 years ago
10.1371/journal.pone.0195971
Accurate prediction of functional, structural, and stability changes in PITX2 mutations using in silico bioinformatics algorithms
Cited by: 33
Author(s): Morteza Seifi, Michael A. Walter
Software Mentions: 2
Published: about 6 years ago
10.1186/1471-2202-8-95
Gene expression profiling in a mouse model of infantile neuronal ceroid lipofuscinosis reveals upregulation of immediate early genes and mediators of the inflammatory response
Cited by: 28
Author(s): Xingwen Qiao, Jui Yun Lu, Sandra L. Hofmann
Software Mentions: 2
Published: over 16 years ago
10.18632/aging.203053
Identification of novel hepatitis B virus therapeutic vaccine candidates derived from polymerase protein
Cited by: 4
Author(s): Juzeng Zheng, Ziqiang Xia, Yilun Xu, Zhanfan Ou, Xiuqing Lin, Sisi Jin, Yang Liu, Jinming Wu
Software Mentions: 2
Published: about 3 years ago
10.1371/journal.pone.0030483
TEPITOPEpan: Extending TEPITOPE for Peptide Binding Prediction Covering over 700 HLA-DR Molecules
Cited by: 91
Author(s): Lianming Zhang, Yiqing Chen, Hau-San Wong, Shuigeng Zhou, Hiroshi Mamitsuka, Shanfeng Zhu
Software Mentions: 2
Published: about 12 years ago
10.1371/journal.pone.0252213
Genome-wide identification, phylogenetic, and expression analysis under abiotic stress conditions of LIM gene family in Medicago sativa L.
Cited by: 6
Author(s): Lili Nian, Xuelu Liu, Yingbo Yang, Xiaolin Zhu, Xianfeng Yi, Fasih Ullah Haider
Software Mentions: 2
Published: almost 3 years ago
10.1186/s12862-015-0405-2
Morphological and ecological divergence of Lilium and Nomocharis within the Hengduan Mountains and Qinghai-Tibetan Plateau may result from habitat specialization and hybridization
Cited by: 31
Author(s): Yongxing Gao, AJ Harris, Xing‐Jin He
Software Mentions: 2
Published: almost 9 years ago
10.1371/journal.pone.0052516
Comparative Analysis of Methods for Identifying Recurrent Copy Number Alterations in Cancer
Cited by: 11
Author(s): Xiguo Yuan, Junying Zhang, Shengli Zhang, Guoqiang Yu, Yue Wang
Software Mentions: 2
Published: over 11 years ago
10.1371/journal.pone.0238179
Genome-wide identification and expression profiling of the carotenoid cleavage dioxygenase (CCD) gene family in Brassica napus L
Cited by: 12
Author(s): Xin-Tong Zhou, Longfei Jia, Mouzheng Duan, Xue Chen, Cailin Qiao, Jinqi Ma, Chao Zhang, Fuyu Jing, Shengsen Zhang, Bo Yang, Liyuan Zhang, Jiana Li
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0206689
The biological functions of target genes in pan-cancers and cell lines were predicted by miR-375 microarray data from GEO database and bioinformatics
Cited by: 4
Author(s): Jiang‐Hui Zeng, Xuzhi Liang, Huihua Lan, Xu Zhu, Xiu-Yun Liang
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0072670
A Minimal Set of Tissue-Specific Hypomethylated CpGs Constitute Epigenetic Signatures of Developmental Programming
Cited by: 20
Author(s): Alejandro Colaneri, Tianyuan Wang, Vijayakanth Pagadala, Jaya Kittur, Nickolas G. Staffa, Shyamal D. Peddada, Elvira Isganaitis, Mary Elizabeth Patti, Lutz Birnbaumer
Software Mentions: 2
Published: over 10 years ago
10.1186/1471-2180-7-99
Subtle genetic changes enhance virulence of methicillin resistant and sensitive Staphylococcus aureus
Cited by: 227
Author(s): Sarah K. Highlander, Kristina G. Hultén, Xiang Qin, Huaiyang Jiang, Shailaja Yerrapragada, Edward O. Mason, Yue Shang, Todd A. Williams, Régine M. Fortunov, Yamei Liu, Okezie Igboeli, Joseph F. Petrosino, Madhan R. Tirumalai, Akif Uzman, George E. Fox, Ana Marı́a Cárdenas, Donna M. Muzny, Lisa Hemphill, Yan Ding, Shannon Dugan, Peter R Blyth, Christian Buhay, Huyen Dinh, Alicia Hawes, Michael Holder, Christie Kovar, Sandra L. Lee, Wen Liu, Lynne V. Nazareth, Qiaoyan Wang, Jianling Zhou, Sheldon L. Kaplan, George M. Weinstock
Software Mentions: 2
Published: over 16 years ago
10.1186/s12866-018-1380-8
Characterization and complete genome analysis of the surfactin-producing, plant-protecting bacterium Bacillus velezensis 9D-6
Cited by: 55
Author(s): Elliot Grady, Jacqueline MacDonald, Margaret T. Ho, Brian Weselowski, Tim McDowell, Ori Solomon, Justin B. Renaud, Zhongshun Yuan
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0006202
Regulation of the Drosophila Enhancer of split and invected-engrailed Gene Complexes by Sister Chromatid Cohesion Proteins
Cited by: 100
Author(s): Cheri A. Schaaf, Ziva Misulovin, Gurmukh Sahota, Akbar M. Siddiqui, Yuri B. Schwartz, Tatyana G. Kahn, Vincenzo Pirrotta, Maria Gause, Dale Dorsett
Software Mentions: 2
Published: almost 15 years ago
10.1186/1471-2148-10-282
The evolutionary trajectory of mitochondrial carrier family during metazoan evolution
Cited by: 7
Author(s): Ming Gong, Jie Li, Meng Wang, Jin Wang, Ke Zen, Chenyu Zhang
Software Mentions: 2
Published: over 13 years ago
10.1371/journal.pone.0010126
Discovery of Selective Inhibitors Against EBNA1 via High Throughput In Silico Virtual Screening
Cited by: 58
Author(s): Ning Li, Scott B. Thompson, D. Schultz, Weiliang Zhu, Hualiang Jiang, Cheng Luo, Paul M. Lieberman
Software Mentions: 2
Published: about 14 years ago
10.1186/s12862-017-0995-y
The colonization and divergence patterns of Brandt’s vole (Lasiopodomys brandtii) populations reveal evidence of genetic surfing
Cited by: 11
Author(s): Ke Li, Michael H. Kohn, Songmei Zhang, Xiaofeng Wan, Dazhao Shi, Deng Wang
Software Mentions: 2
Published: almost 7 years ago
10.1186/s12866-020-02072-3
First insights into the molecular basis association between promoter polymorphisms of the IL1B gene and Helicobacter pylori infection in the Sudanese population: computational approach
Cited by: 5
Author(s): Abeer Babiker Idris, Einas Babiker Idris, Amany Eltayib Ataelmanan, Ali Elbagir Ali Mohamed, Bashir M. Osman Arbab, El-Amin Mohamed Ibrahim, Mohamed A. Hassan
Software Mentions: 2
Published: over 3 years ago
10.1128/AEM.01911-20
Critical Role of MetR/MetB/MetC/MetX in Cysteine and Methionine Metabolism, Fungal Development, and Virulence of Alternaria alternata
Cited by: 13
Author(s): Yunpeng Gai, Lei Li, Hongshen Ma, Brendan K. Riely, Bing Liu, Hongye Li
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0234694
RapidRat: Development, validation and application of a genotyping-by-sequencing panel for rapid biosecurity and invasive species management
Cited by: 6
Author(s): Bryson M. F. Sjodin, Robyn L. Irvine, Michael A. Russello
Software Mentions: 2
Published: almost 4 years ago
10.1371/journal.pone.0122294
A Grammar Inference Approach for Predicting Kinase Specific Phosphorylation Sites
Cited by: 17
Author(s): Sriparna Datta, Soumik Mukhopadhyay
Software Mentions: 2
Published: about 9 years ago
10.1186/s12866-019-1387-9
Functional characterization and proteomic analysis of lolA in Xanthomonas campestris pv. campestris
Cited by: 14
Author(s): Chao‐Tsai Liao, Ying-Chuan Chiang, Yi‐Min Hsiao
Software Mentions: 2
Published: over 5 years ago
10.1128/AEM.02015-20
Pairing of Parental Noroviruses with Unequal Competitiveness Provides a Clear Advantage for Emergence of Progeny Recombinants
Cited by: 1
Author(s): Eung Seo Koo, Yong Seok Jeong
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0112969
The Interaction of RNA Helicase DDX3 with HIV-1 Rev-CRM1-RanGTP Complex during the HIV Replication Cycle
Cited by: 24
Author(s): Seyed Hanif Mahboobi, Alex A. Javanpour, Mohammad R. K. Mofrad
Software Mentions: 2
Published: about 9 years ago
10.1186/s12920-019-0540-5
Development and validation of GMI signature based random survival forest prognosis model to predict clinical outcome in acute myeloid leukemia
Cited by: 11
Author(s): Mingguang Shi, Guofu Xu
Software Mentions: 2
Published: almost 5 years ago
10.1186/s12920-019-0594-4
ATXN1 N-terminal region explains the binding differences of wild-type and expanded forms
Cited by: 6
Author(s): Sara Rocha, Jorge Vieira, Noé Vázquez, Hugo López-Fernández, Florentino Fdez-Riverola, Miguel Reboiro-Jato, André D. Sousa, Cristina Vieira
Software Mentions: 2
Published: over 4 years ago
10.1186/s12920-015-0087-z
Systems biology of myasthenia gravis, integration of aberrant lncRNA and mRNA expression changes
Cited by: 19
Author(s): Zhaohui Luo, Ye Li, Xiaofang Liu, Mingyao Luo, Liqun Xu, Yue‐Bei Luo, Bo Xiao, Huan Yang
Software Mentions: 2
Published: about 9 years ago
10.1107/S0907444913017800
Rv2969c, essential for optimal growth in<i>Mycobacterium tuberculosis</i>, is a DsbA-like enzyme that interacts with VKOR-derived peptides and has atypical features of DsbA-like disulfide oxidases
Cited by: 29
Author(s): Lakshmanane Premkumar, Begoña Heras, Wilko Duprez, Patricia Walden, Maria A. Halili, Fabian Kurth, David P. Fairlie, Jennifer L. Martin
Software Mentions: 2
Published: over 10 years ago
10.1371/journal.pone.0200155
Comparative transcriptome analysis provides global insight into gene expression differences between two orchid cultivars
Cited by: 8
Author(s): Jian Yu, Haiyan Song, Jianlin He, Qiang Wang, Jia Liu
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pone.0004162
Molecular Time-Course and the Metabolic Basis of Entry into Dauer in Caenorhabditis elegans
Cited by: 57
Author(s): Pan Young Jeong, Min Seok Kwon, Hyoe Jin Joo, Young Ki Paik
Software Mentions: 2
Published: over 15 years ago
10.1371/journal.pone.0099408
Ensemble Generation and the Influence of Protein Flexibility on Geometric Tunnel Prediction in Cytochrome P450 Enzymes
Cited by: 16
Author(s): Laura J. Kingsley, Markus A. Lill
Software Mentions: 2
Published: almost 10 years ago
10.1371/journal.pone.0226106
Flax rust infection transcriptomics reveals a transcriptional profile that may be indicative for rust Avr genes
Cited by: 13
Author(s): Wen-Rong Wu, Adnane Nemri, Leila M. Blackman, Ann‐Maree Catanzariti, Jana Sperschneider, Gregory J. Lawrence, Peter N. Dodds, David A. Jones, Adrienne R. Hardham
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0165374
Antennal Transcriptome and Differential Expression Analysis of Five Chemosensory Gene Families from the Asian Honeybee Apis cerana cerana
Cited by: 19
Author(s): Huiting Zhao, Yali Du, Pengfei Gao, Shujie Wang, Pan JianFang, Yusuo Jiang
Software Mentions: 2
Published: over 7 years ago
10.1186/s12881-018-0722-6
Integrated molecular characterization of adult soft tissue sarcoma for therapeutic targets
Cited by: 16
Author(s): Jihyun Kim, June Hyuk Kim, Hyun Guy Kang, Seog Yun Park, Jung Yeon Yu, Eun Young Lee, Sangwook Oh, Young Ho Kim, Tak Yun, Charny Park, Soo Young Cho, Hye Jin You
Software Mentions: 2
Published: over 5 years ago
10.1128/AAC.01002-20
The FDA-Approved Drug Nelfinavir Inhibits Lytic Cell-Free but Not Cell-Associated Nonlytic Transmission of Human Adenovirus
Cited by: 16
Author(s): Fanny Georgi, Vardan Andriasyan, Robert Witte, Luca Murer, Silvio Hemmi, Lisa Yu, Melanie Grove, Nicole Meili, Fabien Kuttler, Artur Yakimovich, Gerardo Turcatti, Urs F. Greber
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0214335
Asymmetric birth and death of type I and type II MADS-box gene subfamilies in the rubber tree facilitating laticifer development
Cited by: 4
Author(s): Anuwat Kumpeangkeaw, Tan D, Lili Fu, Bingying Han, Xiaoyan Sun, Xiaowen Hu, Zehong Ding, Jiaming Zhang
Software Mentions: 2
Published: about 5 years ago
10.1371/journal.pone.0029758
Twist1 Directly Regulates Genes That Promote Cell Proliferation and Migration in Developing Heart Valves
Cited by: 40
Author(s): Mary P. Lee, Katherine E. Yutzey
Software Mentions: 2
Published: over 12 years ago