Ecosyste.ms: Papers

10.1371/journal.pone.0171340

Triticum aestivum WRAB18 functions in plastids and confers abiotic stress tolerance when overexpressed in Escherichia coli and Nicotiania benthamiana
Cited by: 12
Author(s): Xiaoyu Wang, Linsheng Zhang, Yane Zhang, Zhenqing Bai, Hao Líu, Dapeng Zhang
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0144304

Transcriptional and Proteomic Profiling of Aspergillus flavipes in Response to Sulfur Starvation
Cited by: 32
Author(s): Ashraf S. A. El-Sayed, Marwa A. Yassin, Gul Shad Ali
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0040120

CCCH-Type Zinc Finger Family in Maize: Genome-Wide Identification, Classification and Expression Profiling under Abscisic Acid and Drought Treatments
Cited by: 119
Author(s): Xiaojian Peng, Yang Zhao, Jingjie Cao, Wei Zhang, Haiyang Jiang, Xiaoyü Li, Qibin Ma, Suwen Zhu, Beijiu Cheng
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0073444

Analyzing the Modification of the Shewanella oneidensis MR-1 Flagellar Filament
Cited by: 13
Author(s): Sebastian Bubendorfer, Mayumi Ishihara, Kim Dohlich, Christian Heiß, Jan Vogel, Federico Sastre, Maria Panico, Paul G. Hitchen, Anne Dell, Parastoo Azadi, Kai M. Thormann
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0068560

Iterative Fragmentation of Cognitive Maps in a Visual Imagery Task
Cited by: 15
Author(s): Maryam Fourtassı, Abderrazak Hajjıouı, Christian Urquizar, Yves Rossetti, Gilles Rode, Laure Pisella
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0114552

Increased Expression of MERTK is Associated with a Unique Form of Canine Retinopathy
Cited by: 7
Author(s): Saija Ahonen, Meharji Arumilli, Eija H. Seppälä, Osmo Hakosalo, Maria Kaukonen, András M. Komàromy, Hannes Lohi
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0089024

Genomic Characterization of Novel Listeria monocytogenes Serotype 4b Variant Strains
Cited by: 25
Author(s): Pongpan Laksanalamai, Bixing Huang, Jonathan L. Sabo, Laurel S. Burall, Shaohua Zhao, John Bates, Atin R. Datta
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0202915

Prediction and validation of the structural features of Ov58GPCR, an immunogenic determinant of Onchocerca volvulus
Cited by: 7
Author(s): Robert Adamu Shey, Stephen Mbigha Ghogomu, Ferdinand Ngale Njume, Lea Olive Tchouate Gainkam, Philippe Poelvoorde, Léon Mutesa, Annie Robert, Perrine Humblet, Jean‐Pierre Munyampundu, Joseph Kamgno, Christophe Lelubre, Luc Vanhamme, Jacob Souopgui
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0007058

Induction of Epithelial Mesenchimal Transition and Vasculogenesis in the Lenses of Dbl Oncogene Transgenic Mice
Cited by: 4
Author(s): Paolo Fardin, Marzia Ognibene, Cristina Vanni, Amleto De Santanna, Luigi Varesio, Alessandra Eva
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0118483

Hantaan Virus Surveillance Targeting Small Mammals at Nightmare Range, a High Elevation Military Training Area, Gyeonggi Province, Republic of Korea
Cited by: 17
Author(s): Terry A. Klein, Sang Hyun Kim, Sung-Tae Chong, Jeongah Kim, Sook-Young Lee, Won-Keun Kim, Peter V. Nunn, Jin-Won Song
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0223718

Metarhizium robertsii ammonium permeases (MepC and Mep2) contribute to rhizoplane colonization and modulates the transfer of insect derived nitrogen to plants
Cited by: 7
Author(s): Soumya Moonjely, Xing Zhang, Weiguo Fang, Michael Bidochka
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0003307

Amerindian Helicobacter pylori Strains Go Extinct, as European Strains Expand Their Host Range
Cited by: 54
Author(s): Maria Gloria Domínguez-Bello, María-Eglée Pérez, María Cátira Bortolini, Francisco M. Salzano, Luis R. Pericchi, Orlisbeth Zambrano-Guzmán, Bodo Linz
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pone.0011608

Morphometric Relationship, Phylogenetic Correlation, and Character Evolution in the Species-Rich Genus Aphis (Hemiptera: Aphididae)
Cited by: 21
Author(s): Hyojoong Kim, Wonhoon Lee, Seung Hwan Lee
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0062129

A PLSPM-Based Test Statistic for Detecting Gene-Gene Co-Association in Genome-Wide Association Study with Case-Control Design
Cited by: 8
Author(s): Xiaoshuai Zhang, Xiaowei Yang, Zhongshang Yuan, Yanxun Liu, Fangyu Li, Bin Peng, Dianwen Zhu, Jinghua Zhao, Fuzhong Xue
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0020488

Markov Models of Amino Acid Substitution to Study Proteins with Intrinsically Disordered Regions
Cited by: 37
Author(s): Adam M. Szalkowski, Maria Anisimova
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0247864

Genome-wide identification and expression profiling of basic leucine zipper transcription factors following abiotic stresses in potato (Solanum tuberosum L.)
Cited by: 7
Author(s): Pankaj Kumar, Dixit Sharma, Shreya Verma, Dennis Halterman, Arun Kumar
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0129118

Fetal Behavioural Responses to Maternal Voice and Touch
Cited by: 81
Author(s): Viola Marx, Emese Nagy
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0225232

Identification of potential dual -targets anti- toxoplasma gondii compounds through structure-based virtual screening and in-vitro studies
Cited by: 4
Author(s): Nurul Hanim Salin, Rahmah Noordin, Belal O. Al-Najjar, Ezatul Ezleen Kamarulzaman, Muhammad Hafiznur Yunus, Izzati Zahidah Abdul Karim, Nurul Nadieya Mohd Nasim, Iffah Izzati Zakaria, Habibah A. Wahab
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0147181

Sequence and Expression Analysis of Interferon Regulatory Factor 10 (IRF10) in Three Diverse Teleost Fish Reveals Its Role in Antiviral Defense
Cited by: 14
Author(s): Qiaoqing Xu, Yousheng Jiang, Tiehui Wang, Jun Zou, Ming Chang, Dan Yang, Chris J. Secombes, Pin Nie
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0195006

Quantitative N-glycoproteomics reveals altered glycosylation levels of various plasma proteins in bloodstream infected patients
Cited by: 15
Author(s): Sakari Joenväärä, Mayank Saraswat, Pentti Kuusela, Shruti Saraswat, Rahul Agarwal, Johanna Kaartinen, Asko Järvinen, Risto Renkonen
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0129487

Closing Yield Gaps: How Sustainable Can We Be?
Cited by: 179
Author(s): Prajal Pradhan, G. Fischer, H.T. van Velthuizen, Dominik E. Reusser, Jürgen P. Kropp
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0071512

Selection of Specific Protein Binders for Pre-Defined Targets from an Optimized Library of Artificial Helicoidal Repeat Proteins (alphaRep)
Cited by: 46
Author(s): Asma Guellouz, Marie Valerio-Lepiniec, Agathe Urvoas, Anne Chevrel, Marc Graille, Z. Fourati, Michel Desmadril, Herman van Tilbeurgh, Philippe Minard
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0144679

Analytical Model for Estimating Terrestrial Cosmic Ray Fluxes Nearly Anytime and Anywhere in the World: Extension of PARMA/EXPACS
Cited by: 115
Author(s): Tatsuhiko Sato
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0034573

Computational Refinement of Functional Single Nucleotide Polymorphisms Associated with ATM Gene
Cited by: 36
Author(s): George Priya Doss C, B. Rajith
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0065837

Rapid Identification of Novel Immunodominant Proteins and Characterization of a Specific Linear Epitope of Campylobacter jejuni
Cited by: 12
Author(s): Sebastian Hoppe, Frank F. Bier, Markus von Nickisch‐Rosenegk
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0069198

Computational and Experimental Insights into the Mechanism of Substrate Recognition and Feedback Inhibition of Protoporphyrinogen Oxidase
Cited by: 24
Author(s): Ge‐Fei Hao, Ying Tan, Sheng-Gang Yang, Zhifang Wang, Zhan Chen, Zhen Xi, Guang‐Fu Yang
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0009905

SWISS MADE: Standardized WithIn Class Sum of Squares to Evaluate Methodologies and Dataset Elements
Cited by: 22
Author(s): Christopher R. Cabanski, Yuan Qi, Xiaoying Yin, Eric Bair, Michele C. Hayward, Cheng Fan, Jianying Li, Matthew D. Wilkerson, J. S. Marron, Charles M. Perou, D. Neil Hayes
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0130144

The Role of DmCatD, a Cathepsin D-Like Peptidase, and Acid Phosphatase in the Process of Follicular Atresia in Dipetalogaster maxima (Hemiptera: Reduviidae), a Vector of Chagas' Disease
Cited by: 19
Author(s): Jimena Leyria, Leonardo L. Fruttero, Magalí Nazar, Lilián Etelvina Canavoso
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0109086

Clock Gene Modulates Roles of OXTR and AVPR1b Genes in Prosociality
Cited by: 9
Author(s): Haipeng Ci, Nan Wu, Yanjie Su
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0132596

Interspecific Phylogenic Relationships within Genus Melilotus Based on Nuclear and Chloroplast DNA
Cited by: 26
Author(s): Hongyan Di, Zengqiang Duan, Kai Luo, Daiyu Zhang, Fan Wu, Jiyu Zhang, Wenxian Liu, Yanrong Wang
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0159101

Identification of Chromosome Segment Substitution Lines of Gossypium barbadense Introgressed in G. hirsutum and Quantitative Trait Locus Mapping for Fiber Quality and Yield Traits
Cited by: 29
Author(s): Huan-Chen Zhai, Wànkuí Gǒng, Yunna Tan, Àiyīng Liú, Weiwu Song, Jùnwén Lǐ, Zhuying Deng, Linglei Kong, Jǔwǔ Gōng, Hǎihóng Shāng, Tingting Chen, Qún Gě, Yùzhēn Shí, Yǒulù Yuán
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0049768

Investigating the Genetic Basis of Theory of Mind (ToM): The Role of Catechol-O-Methyltransferase (COMT) Gene Polymorphisms
Cited by: 23
Author(s): Haiwei Xia, Nan Wu, Yanjie Su
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0151323

An Approach to Function Annotation for Proteins of Unknown Function (PUFs) in the Transcriptome of Indian Mulberry
Cited by: 27
Author(s): K. H. Dhanyalakshmi, Mahantesha Bn Naika, Radha Sivarajan Sajeevan, Oommen K. Mathew, K. Mohamed Shafi, Ramanathan Sowdhamini, K. Nataraja
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0130933

Screening for FtsZ Dimerization Inhibitors Using Fluorescence Cross-Correlation Spectroscopy and Surface Resonance Plasmon Analysis
Cited by: 12
Author(s): Shintaro Mikuni, Kota Kodama, Akira Sasaki, Naoki Kohira, Hideki Maki, Masaharu Munetomo, Katsumi Maenaka, Masataka Kinjo
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0032896

High Density Microarray Analysis Reveals New Insights into Genetic Footprints of Listeria monocytogenes Strains Involved in Listeriosis Outbreaks
Cited by: 32
Author(s): Pongpan Laksanalamai, Scott A. Jackson, Mark K. Mammel, Atin R. Datta
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0160390

Analytical Model for Estimating the Zenith Angle Dependence of Terrestrial Cosmic Ray Fluxes
Cited by: 81
Author(s): Tatsuhiko Sato
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0050570

Expression of Caytaxin Protein in Cayman Ataxia Mouse Models Correlates with Phenotype Severity
Cited by: 14
Author(s): Kristine M. Sikora, LaGina Nosavanh, Prameela Kantheti, Margit Burmeister, Michael Hortsch
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0017625

Global Array-Based Transcriptomics from Minimal Input RNA Utilising an Optimal RNA Isolation Process Combined with SPIA cDNA Probes
Cited by: 4
Author(s): Laura Kennedy, Maheshwar Pauriah, Valerie Godfrey, J. W. Howie, Helen M. Dennis, Daniel Crowther, Allan D. Struthers, Catharine A. Goddard, Giora Feuerstein, Chim C. Lang, Gino Miele
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0110051

Novel MiRNA and PhasiRNA Biogenesis Networks in Soybean Roots from Two Sister Lines That Are Resistant and Susceptible to SCN Race 4
Cited by: 25
Author(s): Miaoyun Xu, Yinghui Li, Qiuxue Zhang, Tao Xu, Lijuan Qiu, Yanting Fan, Lei Wang
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0138364

Risk Knowledge in Relapsing Multiple Sclerosis (RIKNO 1.0) - Development of an Outcome Instrument for Educational Interventions
Cited by: 16
Author(s): Christoph Heesen, Jürgen Kasper, Korbinian Fischer, Sascha Köpke, Anne Christin Rahn, Imke Backhus, Jana Poettgen, Liina Vahter, Jelena Drulović, A van Nunen, Yeşim Beckmann, Katrin Liethmann, Andrea Giordano, Gary Fulcher, Alessandra Solari, AutoMS-group
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0040686

Transcriptional Abnormalities of Hamstring Muscle Contractures in Children with Cerebral Palsy
Cited by: 51
Author(s): Lucas Smith, Henry G. Chambers, Shankar Subramaniam, Richard L. Lieber
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0119886

High Frequency of Transmitted HIV-1 Gag HLA Class I-Driven Immune Escape Variants but Minimal Immune Selection over the First Year of Clade C Infection
Cited by: 16
Author(s): Kamini Gounder, Nagavelli Padayachi, Jaclyn K. Mann, Mopo Radebe, Mammekwa Mokgoro, Mary van der Stok, Lungile Mkhize, Zenele Mncube, Manjeetha Jaggernath, Tarylee Reddy, Bruce D. Walker, Thumbi Ndung’u
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0036990

Direct and Allosteric Inhibition of the FGF2/HSPGs/FGFR1 Ternary Complex Formation by an Antiangiogenic, Thrombospondin-1-Mimic Small Molecule
Cited by: 39
Author(s): Katiuscia Pagano, Rubben Torella, Chiara Foglieni, Antonella Bugatti, Simona Tomaselli, Lucia Zetta, Marco Presta, Marco Rusnati, Giulia Taraboletti, Giorgio Colombo, Laura Ragona
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0026508

An Essential Farnesylated Kinesin in Trypanosoma brucei
Cited by: 4
Author(s): Erin J. Engelson, Frederick S. Buckner, Wesley C. Van Voorhis
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0123170

Identification, Diversity and Evolution of MITEs in the Genomes of Microsporidian Nosema Parasites
Cited by: 4
Author(s): Qing-Yu He, Zengyi Ma, Xiaoqun Dang, Jianlong Xu, Zeyang Zhou
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0104547

CCAAT/Enhancer Binding Protein β Regulates Expression of Indian Hedgehog during Chondrocytes Differentiation
Cited by: 9
Author(s): Takahiro Ushijima, Ken Okazaki, Hiroyuki Tsushima, Kazuhíko Ishihara, Toshio Doi, Yukihide Iwamoto
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0062922

Transcriptome Analysis of Buds and Leaves Using 454 Pyrosequencing to Discover Genes Associated with the Biosynthesis of Active Ingredients in Lonicera japonica Thunb.
Cited by: 40
Author(s): Li He, Xiaolan Xu, Ying Liu, Chunfang Li, Yingjie Zhu, Hu Yan, Zheng Sun, Chao Sun, Jingyuan Song, Bin Yuan, Juan Shen, Ruiyang Cheng, Zhenzhong Wang, Wei Xiao, Shilin Chen
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0209245

The prevalence of non-GII.4 norovirus genotypes in acute gastroenteritis outbreaks in Jinan, China
Cited by: 5
Author(s): Lanzheng Liu, Huaijin Guan, Ying Zhang, Chunrong Wang, Guoliang Yang, Shiman Ruan, Huichan Zhao, Xiao Han
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0057840

Comparative Genomics Identifies the Mouse Bmp3 Promoter and an Upstream Evolutionary Conserved Region (ECR) in Mammals
Cited by: 13
Author(s): Jonathan W. Lowery, Anna W. LaVigne, Shoichiro Kokabu, Vicki Rosen
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0100737

Microbial Quality and Phylogenetic Diversity of Fresh Rainwater and Tropical Freshwater Reservoir
Cited by: 31
Author(s): Rajini Kaushik, Rajasekhar Balasubramanian, Hugh Dunstan
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0059354

CD106 Identifies a Subpopulation of Mesenchymal Stem Cells with Unique Immunomodulatory Properties
Cited by: 156
Author(s): Yang Zhou, Zhibo Han, Yue Ji, You Wei Wang, Lu Liang, Ying Cheng, Shangda Yang, Li Na Li, Wei Luo, Jian Ping Li, Dan Dan Chen, Wenjuan Du, Xiaocang Cao, Guang Sheng Zhuo, Tao Wang, Zhong Chao Han
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0070930

Mapping of Mcs30, a New Mammary Carcinoma Susceptibility Quantitative Trait Locus (QTL30) on Rat Chromosome 12: Identification of Fry as a Candidate Mcs Gene
Cited by: 12
Author(s): Xuefeng Ren, Jessica C. Graham, Lichen Jing, Andrei M. Mikheev, Yuan Gao, Jenny Lew, Hong Xie, Andrea S. Kim, Xiuling Shang, Cynthia Friedman, Graham Vail, Ming Fang, Yana Bromberg, Helmut Zarbl
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0172716

Adult onset asthma and interaction between genes and active tobacco smoking: The GABRIEL consortium
Cited by: 19
Author(s): Judith M. Vonk, Salome Scholtens, D.S. Postma, Miriam F. Moffatt, Déborah Jarvis, Adaikalavan Ramasamy, Matthias Wjst, Ernst Omenaas, Emmanuelle Bouzigon, Florence Demenais, Rachel Nadif, Valérie Siroux, Alexey Polonikov, Maria Solodilova, В. П. Иванов, Cristina Ivan, Medea Imboden, Anil Kumar, N M Probst-Hensch, Л. М. Огородова, V. P. Puzyrev, E. Yu. Bragina, Maxim B. Freidin, Ilja M. Nolte, A. M. Farrall, William Cookson, David P. Strachan, Gerard H. Koppelman, H.M. Boezen
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0068836

Molecular and Functional Characterization of Odorant-Binding Protein Genes in an Invasive Vector Mosquito, Aedes albopictus
Cited by: 34
Author(s): Yuewen Deng, Hui Yan, Jiande Gu, Jiabao Xu, Kun Wu, Zhijian Tu, Anthony A. James, Xiaoguang Chen
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0096157

Predicting Impacts of Climate Change on the Aboveground Carbon Sequestration Rate of a Temperate Forest in Northeastern China
Cited by: 24
Author(s): Jun Ma, Yuanman Hu, Rencang Bu, Yu Chang, Hua-Wei Deng, Qin Qin
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0133920

Predicting Soluble Nickel in Soils Using Soil Properties and Total Nickel
Cited by: 11
Author(s): Xiaoqing Zhang, Jumei Li, Dongpu Wei, Bo Li, Yibing Ma
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0087976

Identification of Nitrogen-Fixing Genes and Gene Clusters from Metagenomic Library of Acid Mine Drainage
Cited by: 23
Author(s): Zhimin Dai, Xue Guo, Huaqun Yin, Yili Liang, Jing Cong, Xueduan Liu
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0080932

Tracing Arab-Islamic Inheritance in Madagascar: Study of the Y-chromosome and Mitochondrial DNA in the Antemoro
Cited by: 42
Author(s): Mélanie Capredon, Nicolas Brucato, Laure Tonasso, Choesmel-Cadamuro Valérie, François‐Xavier Ricaut, Harilanto Razafindrazaka, Andriamihaja Bakomalala Rakotondrabe, Mamisoa Adelta Ratolojanahary, Randriamarolaza Louis-Paul, B. Champion, Jean‐Michel Dugoujon
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0100127

Receptor Interactive Protein Kinase 3 Promotes Cisplatin-Triggered Necrosis in Apoptosis-Resistant Esophageal Squamous Cell Carcinoma Cells
Cited by: 32
Author(s): Yang Xu, Zhengwei Lin, Nan Zhao, Lanping Zhou, Fang Liu, Zbigniew A. Cichacz, Lin Zhang, Qimin Zhan, Xiaohang Zhao
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0176117

Identification of the chain-dispersing peptidoglycan hydrolase LytB of Streptococcus gordonii
Cited by: 10
Author(s): Riccardo Arrigucci, Gianni Pozzi
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0054111

Genome-Wide Analysis of miRNA Signature Differentially Expressed in Doxorubicin-Resistant and Parental Human Hepatocellular Carcinoma Cell Lines
Cited by: 34
Author(s): Jufeng Zhang, Ying Wang, Pingping Zhen, Xia Luo, Chao Zhang, Lin Zhou, Yanxin Lu, Yang Yang, Wei Zhang, Jun Wan
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0182768

Whole genome sequence of the Treponema pallidum subsp. pallidum strain Amoy: An Asian isolate highly similar to SS14
Cited by: 38
Author(s): Man Li Tong, Qiang Zhao, Li Li Liu, Xiao Zhu, Kun Gao, Hui Lin Zhang, Lin Li, Jian Jun Niu, Zhiming Ji, Tian‐Ci Yang
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0020308

Evolution of Hsp70 Gene Expression: A Role for Changes in AT-Richness within Promoters
Cited by: 20
Author(s): Bing Chen, Tieliu Jia, Ronghui Ma, Bo Zhang, Le Kang
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0144379

Multiple Genes in a Single Host: Cost-Effective Production of Bacterial Laccase (cotA), Pectate Lyase (pel), and Endoxylanase (xyl) by Simultaneous Expression and Cloning in Single Vector in E. coli
Cited by: 13
Author(s): Sandeep Kumar, Kavish Kumar Jain, Kailash N. Bhardwaj, Subhojit Chakraborty, Ramesh Chander Kuhad
Software Mentions: 1
Published: almost 9 years ago

10.3390/cancers12113221

Marked Increased Production of Acute Phase Reactants by Skeletal Muscle during Cancer Cachexia
Cited by: 6
Author(s): Isabelle S Massart, Geneviève Paulissen, Audrey Loumaye, Pascale Lause, Sarah A. Pötgens, Morgane M. Thibaut, Estelle Balan, Louise Deldicque, Azeddine Atfi, Édouard Louis, Damien Gruson, Laure B. Bindels, Marie‐Alice Meuwis, Jean‐Paul Thissen
Software Mentions: 1
Published: about 4 years ago

10.3390/cancers13174474

Targeting S1PR1 May Result in Enhanced Migration of Cancer Cells in Bladder Carcinoma
Cited by: 4
Author(s): Chin-Li Chen, En Meng, Sheng‐Tang Wu, Huanling Lai, Lu YiShan, Ming-Hsin Yang, Chih-Wei Tsao, Chung-Cheng Kao, Yi-Lin Chiu
Software Mentions: 1
Published: about 3 years ago

10.3390/cancers13112582

MiR-139 Modulates Cancer Stem Cell Function of Human Breast Cancer through Targeting CXCR4
Cited by: 9
Author(s): Chun-Wen Cheng, Wen‐Ling Liao, Po‐Ming Chen, Jyh‐Cherng Yu, Hui-Ping Shiau, Yi‐Hsien Hsieh, Huei-Jane Lee, Ya-Yun Cheng, Pei-Ei Wu, Chen‐Yang Shen
Software Mentions: 1
Published: over 3 years ago

10.1038/s41419-019-1805-9

TOPK inhibits autophagy by phosphorylating ULK1 and promotes glioma resistance to TMZ
Cited by: 29
Author(s): Hui Lü, Junhui Xiao, Chao Ke, Xiaofang Ni, Ruijuan Xiu, Qing Tian, Haitao Pan, Ling Zou, Fei Wang, Tengfei Ma, Xin‐Ying Ji, Ping Yuan, Lin Liu, Jianmin Zhang, Wei Hua Jia, Qiuhong Duan, Zheng Feng
Software Mentions: 1
Published: over 5 years ago

10.1038/s41419-021-04053-4

Autophagy-associated circular RNA hsa_circ_0007813 modulates human bladder cancer progression via hsa-miR-361-3p/IGF2R regulation
Cited by: 15
Author(s): Zheyu Zhang, Zezhong Mou, Chenyang Xu, Siqi Wu, Xiaoming Dai, Xinan Chen, Yuxi Ou, Yi‐Ling Chen, Chen Yang, Haowen Jiang
Software Mentions: 1
Published: over 3 years ago

10.1038/s41419-021-03986-0

Retinoblastoma cell-derived exosomes promote angiogenesis of human vesicle endothelial cells through microRNA‐92a-3p
Cited by: 34
Author(s): Shuilian Chen, Xi Chen, Qian Luo, Xuan Li, Xiao Wang, Zedu Cui, Anqi He, Shengyu He, Zi‐Hua Jiang, Nanping Wu, Pei Chen, Keming Yu, Jing Zhuang
Software Mentions: 1
Published: over 3 years ago

10.1186/s11658-018-0104-2

Oct4 regulates DNA methyltransferase 1 transcription by direct binding of the regulatory element
Cited by: 3
Author(s): Fengrui Wu, Qingqing Wu, Dengkun Li, Zhen Yuan, Rong Wang, Yong Liu, Wenyong Li
Software Mentions: 1
Published: over 6 years ago

10.3390/cells9020353

PVPred-SCM: Improved Prediction and Analysis of Phage Virion Proteins Using a Scoring Card Method
Cited by: 44
Author(s): Phasit Charoenkwan, Sakawrat Kanthawong, Nalini Schaduangrat, Janchai Yana, Watshara Shoombuatong
Software Mentions: 1
Published: almost 5 years ago

10.3390/cells10081949

Genome-Wide Characterization of R2R3-MYB Transcription Factors in Pitaya Reveals a R2R3-MYB Repressor HuMYB1 Involved in Fruit Ripening through Regulation of Betalain Biosynthesis by Repressing Betalain Biosynthesis-Related Genes
Cited by: 20
Author(s): Fangfang Xie, Qian Hua, Canbin Chen, Zhike Zhang, Rong Zhang, Jietang Zhao, Guibing Hu, Jian-Ye Chen, Yonghua Qin
Software Mentions: 1
Published: over 3 years ago

10.3390/cells9061442

Induction of the Endoplasmic-Reticulum-Stress Response: MicroRNA-34a Targeting of the IRE1α-Branch
Cited by: 14
Author(s): Lena Krammes, Martin Hart, Stefanie Rheinheimer, Caroline Diener, Jennifer Menegatti, Friedrich A. Grässer, Andreas Keller, Eckart Meese
Software Mentions: 1
Published: over 4 years ago

10.3390/cells10081927

Acute RhoA/Rho Kinase Inhibition Is Sufficient to Restore Phagocytic Capacity to Retinal Pigment Epithelium Lacking the Engulfment Receptor MerTK
Cited by: 5
Author(s): Yihua Mao, Silvia C. Finnemann
Software Mentions: 1
Published: over 3 years ago

10.1093/cercor/bhw373

Repetition Suppression and Memory for Faces is Reduced in Adults with Autism Spectrum Conditions
Cited by: 32
Author(s): Michael P. Ewbank, Philip J. Pell, Thomas Powell, Elisabeth von dem Hagen, Simon Baron‐Cohen, Andrew J. Calder
Software Mentions: 1
Published: almost 8 years ago

10.1093/cercor/bhu149

Repetition Suppression in Ventral Visual Cortex Is Diminished as a Function of Increasing Autistic Traits
Cited by: 30
Author(s): Michael P. Ewbank, Gillian Rhodes, Elisabeth von dem Hagen, Thomas Powell, Naomi Bright, Raliza S. Stoyanova, Simon Baron‐Cohen, Andrew J. Calder
Software Mentions: 1
Published: over 10 years ago

10.1039/c5sc03115j

A poised fragment library enables rapid synthetic expansion yielding the first reported inhibitors of PHIP(2), an atypical bromodomain
Cited by: 111
Author(s): Oakley Benjamin Cox, T. Krojer, P. Collins, Octovia Monteiro, R. Talon, A.R. Bradley, O. Fedorov, Jahangir Amin, Brian D. Marsden, John Spencer, Frank von Delft, P.E. Brennan
Software Mentions: 1
Published: almost 9 years ago

10.1002/cpt.1184

Assessment of an <i>In Silico</i> Mechanistic Model for Proarrhythmia Risk Prediction Under the Ci<scp>PA</scp> Initiative
Cited by: 105
Author(s): Zhihua Li, Bradley J. Ridder, Xiaomei Han, Wendy Wu, Jiansong Sheng, Phu N. Tran, Min Wu, Aaron Randolph, Ross H. Johnstone, Gary R. Mirams, Yuri A. Kuryshev, James Kramer, Caiyun Wu, William J. Crumb, David G. Strauss
Software Mentions: 1
Published: about 6 years ago

10.1186/s40169-020-0256-3

Unveiling ncRNA regulatory axes in atherosclerosis progression
Cited by: 22
Author(s): Estanis Navarro, Adrián Mallén, Josep M. Cruzado, Miguel Hueso
Software Mentions: 1
Published: almost 5 years ago

10.1002/ctm2.341

LRRK2 inhibition potentiates PARP inhibitor cytotoxicity through inhibiting homologous recombination‐mediated DNA double strand break repair
Cited by: 8
Author(s): Lifeng Chen, Jing Hou, Xiangyu Zeng, Qiang Guo, Min Deng, Jake A. Kloeber, Xinyi Tu, Fei Zhao, Zheming Wu, Jinzhou Huang, Kuntian Luo, Wootae Kim, Zhenkun Lou
Software Mentions: 1
Published: over 3 years ago

10.6061/clinics/2019/e1316

Treatment of anxiety disorders in clinical practice: a critical overview of recent systematic evidence
Cited by: 13
Author(s): Vitor Iglesias Mangolini, Laura Helena Andrade, Francisco Lotufo-Neto, Yuan‐Pang Wang
Software Mentions: 1
Published: almost 6 years ago

10.1038/s42003-020-0983-4

SRPK1 acetylation modulates alternative splicing to regulate cisplatin resistance in breast cancer cells
Cited by: 28
Author(s): Cheng Wang, Zhihong Zhou, Charannya Sozheesvari Subhramanyam, Qian Cao, Zealyn Shi Lin Heng, Wen Li, Xiang-Dong Fu, Qidong Hu
Software Mentions: 1
Published: over 4 years ago

10.1155/2009/406421

An Exon-Based Comparative Variant Analysis Pipeline to Study the Scale and Role of Frameshift and Nonsense Mutation in the Human-Chimpanzee Divergence
Cited by: 1
Author(s): Guoying Karen Yu
Software Mentions: 1
Published: almost 16 years ago

10.1155/2020/8750167

A Computational Model to Investigate GABA-Activated Astrocyte Modulation of Neuronal Excitation
Cited by: 4
Author(s): Licong Li, Jin Zhou, Honghao Sun, Jing Liu, Hongrui Wang, Xiuling Liu, Changyong Wang
Software Mentions: 1
Published: about 4 years ago

10.1016/j.csbj.2014.11.004

A computational design approach for virtual screening of peptide interactions across K + channel families
Cited by: 13
Author(s): Craig A. Doupnik, Katherine Cristina Parra, Wayne C. Guida
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.csbj.2016.05.005

MicroRNAs and oncogenic transcriptional regulatory networks controlling metabolic reprogramming in cancers
Cited by: 61
Author(s): Pannapa Pinweha, Khanti Rattanapornsompong, Varodom Charoensawan, Sarawut Jitrapakdee
Software Mentions: 1
Published: almost 9 years ago

10.1186/cc13929

Long-term outcome of delirium during intensive care unit stay in survivors of critical illness: a prospective cohort study
Cited by: 140
Author(s): Annemiek E. Wolters, Diederik van Dijk, Wietze Pasma, Olaf L. Cremer, Marjolein Looije, Dylan W. de Lange, Dieuwke S. Veldhuijzen, Arjen J. C. Slooter
Software Mentions: 1
Published: almost 11 years ago

10.7759/cureus.1731

Multimodality 3D Superposition and Automated Whole Brain Tractography: Comprehensive Printing of the Functional Brain
Cited by: 2
Author(s): Sanjay Konakondla, Cameron Brimley, Jesna Mathew Sublett, Edward Stefanowicz, Sarah Flora, Gino Mongelluzzo, Clemens M. Schirmer
Software Mentions: 1
Published: about 7 years ago

10.7759/cureus.5094

Perceptions Pertaining to Clinical Depression in Karachi, Pakistan
Cited by: 8
Author(s): Maheen Nisar, Rubaab M Mohammad, Sani Fatima, Preet R Shaikh, Mehroze Rehman
Software Mentions: 1
Published: over 5 years ago

10.1016/j.dib.2021.107356

Life cycle assessment data of French organic agricultural products
Cited by: 6
Author(s): Laure Nitschelm, Blanche Flipo, Julie Auberger, Hélène Chambaut, Sylvie Dauguet, Sandrine Espagnol, Armelle Gac, Cécile Le Gall, Caroline Malnoë, Aurélie Perrin, Paul Ponchant, Christel Renaud-Gentié, Aurélie Tailleur, H.M.G. van der Werf
Software Mentions: 1
Published: about 3 years ago

10.1093/database/bav064

BEAN 2.0: an integrated web resource for the identification and functional analysis of type III secreted effectors
Cited by: 38
Author(s): Xiaobao Dong, Xiaotian Lu, Ziding Zhang
Software Mentions: 1
Published: almost 10 years ago

10.1093/database/bau025

SysPTM 2.0: an updated systematic resource for post-translational modification
Cited by: 58
Author(s): Jing Li, Jia Jia, Hong Li, Yu Jian, Han Sun, Ying He, Daqing Lv, Xiaojuan Yang, Michael O. Glocker, Liangxiao Ma, Jiabei Yang, Ling Li, Wei Li, Guoqing Zhang, Qian Liu, Yixue Li, Lu Xie
Software Mentions: 1
Published: over 10 years ago

10.1093/database/bau005

MICdb3.0: a comprehensive resource of microsatellite repeats from prokaryotic genomes
Cited by: 7
Author(s): Suresh B. Mudunuri, Sujan Patnana, Hampapathalu A. Nagarajaram
Software Mentions: 1
Published: almost 11 years ago

10.1093/database/bau043

miRror-Suite: decoding coordinated regulation by microRNAs
Cited by: 23
Author(s): Yitzhak Friedman, Solange Karsenty, Michal Linial
Software Mentions: 1
Published: over 10 years ago

10.1093/database/baw013

PhyloPro2.0: a database for the dynamic exploration of phylogenetically conserved proteins and their domain architectures across the Eukarya
Cited by: 12
Author(s): Graham Cromar, Anthony Zhao, Xuejian Xiong, Lakshmipuram S. Swapna, Noeleen B. Loughran, Hongyan Song, John Parkinson
Software Mentions: 1
Published: almost 9 years ago

10.1080/10717544.2019.1568623

Preparation, optimization of the inclusion complex of glaucocalyxin A with sulfobutylether-β-cyclodextrin and antitumor study
Cited by: 17
Author(s): Lili Ren, Jingjing Wang, Guoguang Chen
Software Mentions: 1
Published: almost 6 years ago

10.1186/2197-7364-1-10

Missing head and color banding in low-count SPECT reconstructions
Cited by: 0
Author(s): Robin de Nijs, Björn Neumann Jensen, Jann Mortensen
Software Mentions: 1
Published: about 10 years ago

10.1002/ece3.7622

Genetic diversity and evolutionary patterns of <i>Taraxacum kok‐saghyz</i> Rodin
Cited by: 5
Author(s): Yan Zhang, Hailong Ren, Xuechao Zhang, Li Wang, Qiang Gao, Abudukeyoumu Abudurezike, Qingqing Yan, Zengkui Lu, Yonggang Wang, Qiuhai Nie, Lin Xu, Zhibin Zhang
Software Mentions: 1
Published: over 3 years ago

10.1002/ece3.3579

An integrative mating system assessment of a nonmodel, economically important Pacific rockfish (<i>Sebastes melanops</i>) reveals nonterritorial polygamy and conservation implications for a large species flock
Cited by: 6
Author(s): Kurt W. Karageorge, Raymond R. Wilson
Software Mentions: 1
Published: almost 7 years ago