pypi: 0 | Projects | Ecosyste.ms: Papers

10.7717/peerj.10646

Evolution of<i>Wolbachia</i>mutualism and reproductive parasitism: insight from two novel strains that co-infect cat fleas
Cited by: 38
Author(s): Timothy Driscoll, Victoria I. Verhoeve, Cassia Brockway, Darin L. Shrewsberry, Mariah L. Plumer, Spiridon E Sevdalis, John F. Beckmann, Laura Krueger, Kevin R. Macaluso, Abdu F. Azad, Joseph J. Gillespie
Software Mentions: 1
Published: almost 4 years ago

10.7717/peerj.6682

Identification of the GRAS gene family in the <i> Brassica juncea</i> genome provides insight into its role in stem swelling in stem mustard
Cited by: 18
Author(s): Mengyao Li, Bo Sun, Fangjie Xie, Ronggao Gong, Yunbo Luo, Fen Zhang, Zhang Yan, Haoru Tang
Software Mentions: 1
Published: over 5 years ago

10.1093/pcp/pcw212

Alga-PrAS (Algal Protein Annotation Suite): A Database of Comprehensive Annotation in Algal Proteomes
Cited by: 8
Author(s): Atsushi Kurotani, Yutaka Yamada, Tetsuya Sakurai
Software Mentions: 1
Published: almost 8 years ago

10.1007/s00299-019-02464-4

Current status in whole genome sequencing and analysis of Ipomoea spp.
Cited by: 16
Author(s): Sachiko Isobe, Kenta Shirasawa, Hideki Hirakawa
Software Mentions: 1
Published: about 5 years ago

10.3390/plants10010122

Genome-Wide Identification of Banana Csl Gene Family and Their Different Responses to Low Temperature between Chilling-Sensitive and Tolerant Cultivars
Cited by: 6
Author(s): Wenya Yuan, Jing Liu, Tomáš Takáč, Houbin Chen, Xiaoquan Li, Jian Meng, Yehuan Tan, Tangyuan Ning, Zhenting He, Ganjun Yi, Chun Xu
Software Mentions: 1
Published: almost 4 years ago

10.3390/plants10020200

Fe-S Protein Synthesis in Green Algae Mitochondria
Cited by: 4
Author(s): Diego F. Gómez-Casati, María V. Busi, Julieta Barchiesi, María A. Pagani, Noelia S. Marchetti-Acosta, Agustina Terenzi
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pbio.1002457

GPCRs Direct Germline Development and Somatic Gonad Function in Planarians
Cited by: 39
Author(s): Amir Saberi, Ayana Jamal, Isabel Beets, Liliane Schoofs, Phillip A. Newmark
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pcbi.1007001

Beyond core object recognition: Recurrent processes account for object recognition under occlusion
Cited by: 61
Author(s): Karim Rajaei, Yalda Mohsenzadeh, Reza Ebrahimpour, Seyed‐Mahdi Khaligh‐Razavi
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1008193

NuSeT: A deep learning tool for reliably separating and analyzing crowded cells
Cited by: 62
Author(s): L. Yang, Rajarshi P. Ghosh, James Franklin, Simon Chen, Chenyu You, Raja R. Narayan, Marc L. Melcher, Jan Liphardt
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pcbi.1009048

GCSENet: A GCN, CNN and SENet ensemble model for microRNA-disease association prediction
Cited by: 10
Author(s): Lisheng Zhong, Kaiyancheng Jiang, Shengwei Qin, Yijun Zhong, Arne Elofsson
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pcbi.1004656

The siRNA Non-seed Region and Its Target Sequences Are Auxiliary Determinants of Off-Target Effects
Cited by: 45
Author(s): Piotr J. Kamola, Yuko Nakano, Tomoko Takahashi, P. David Wilson, Kumiko Ui-Tei
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pcbi.1005717

Domain-based prediction of the human isoform interactome provides insights into the functional impact of alternative splicing
Cited by: 29
Author(s): Mohamed Ali Ghadie, L. Lambourne, Marc Vidal, Yu Xia
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pcbi.1009334

An integrated framework for building trustworthy data-driven epidemiological models: Application to the COVID-19 outbreak in New York City
Cited by: 13
Author(s): Sheng Zhang, Joan Ponce, Zhen Zhang, Guang Lin, George Em Karniadakis
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pcbi.1005123

Improved Measures of Integrated Information
Cited by: 95
Author(s): Max Tegmark
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pgen.1008047

The dynamin-like protein Fzl promotes thylakoid fusion and resistance to light stress in Chlamydomonas reinhardtii
Cited by: 30
Author(s): Justin Findinier, Cédric Delevoye, Mickaël M. Cohen
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pgen.1002869

Comparative Analysis of the Genomes of Two Field Isolates of the Rice Blast Fungus Magnaporthe oryzae
Cited by: 158
Author(s): Minfeng Xue, Jun Yang, Zhigang Li, Songnian Hu, Nan Yao, Ralph A. Dean, Wensheng Zhao, Mi Shen, Haiwang Zhang, Chao Li, Liyuan Liu, Lei Cao, Xiaowen Xu, Yan Xing, Tom Hsiang, Ziding Zhang, Jin‐Rong Xu, You-Liang Peng
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pgen.1003357

Pax6 Regulates Gene Expression in the Vertebrate Lens through miR-204
Cited by: 82
Author(s): Ohad Shaham, Karen Gueta, Eyal Mor, Pazit Oren-Giladi, Dina Grinberg, Qing Xie, Aleš Cvekl, Noam Shomron, N S Davis, Maya Keydar-Prizant, S. Raviv, Metsada Pasmanik‐Chor, Rachel E. Bell, Carmit Levy, Raffaella Avellino, Sandro Banfi, Iván Conte, Ruth Ashery‐Padan
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pgen.1002756

G Protein Activation without a GEF in the Plant Kingdom
Cited by: 110
Author(s): Daisuke Urano, Janice C. Jones, Hao Wang, Melissa M. Matthews, William Bradford, Jeffrey L. Bennetzen, Alan M. Jones
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pgen.1000391

Turnover of Sex Chromosomes in the Stickleback Fishes (Gasterosteidae)
Cited by: 236
Author(s): Joseph A. Ross, James R. Urton, Jessica L. Boland, Michael D. Shapiro, Catherine L. Peichel
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pntd.0000410

Brugia malayi Excreted/Secreted Proteins at the Host/Parasite Interface: Stage- and Gender-Specific Proteomic Profiling
Cited by: 184
Author(s): Sasisekhar Bennuru, Roshanak Tolouei Semnani, Zhaojing Meng, José M. C. Ribeiro, Timothy D. Veenstra, Thomas B. Nutman
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pntd.0006047

Ecological niche modeling and distribution of Ornithodoros hermsi associated with tick-borne relapsing fever in western North America
Cited by: 31
Author(s): Kylie M. Sage, Tammi L. Johnson, Mike B. Teglas, Nathan C. Nieto, Tom G. Schwan
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pntd.0009105

Sialotranscriptomics of the argasid tick Ornithodoros moubata along the trophogonic cycle
Cited by: 15
Author(s): Ana Oleaga, Beatriz Soriano, Carlos Lloréns, Ricardo Pérez–Sánchez
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pntd.0004998

Analgesic Effect of Photobiomodulation on Bothrops Moojeni Venom-Induced Hyperalgesia: A Mechanism Dependent on Neuronal Inhibition, Cytokines and Kinin Receptors Modulation
Cited by: 22
Author(s): Nikele Nadur-Andrade, Camila S. Dale, Victória Regina da Silva Oliveira, Elaine F. Toniolo, Regiane dos Santos Feliciano, José António Pereira da Silva, Stella Regina Zamunér
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pntd.0004216

Molecular Characterization of a Novel Family of Trypanosoma cruzi Surface Membrane Proteins (TcSMP) Involved in Mammalian Host Cell Invasion
Cited by: 33
Author(s): Nadini Oliveira Martins, Renato T. Souza, Esteban Cordero, Danielle Cortez Maldonado, Cristian Cortéz, Marjorie Mendes Marini, Éden Ramalho Ferreira, Ethel Bayer-Santos, Igor C. Almeida, Nobuko Yoshida, José Franco da Silveira
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0107249

Genetic Linkage Map Construction and QTL Mapping of Salt Tolerance Traits in Zoysiagrass (Zoysia japonica)
Cited by: 28
Author(s): Hailin Guo, Wanwen Ding, Jingbo Chen, Xuan Chen, Yongqi Zheng, Zhiyong Wang, Jianxiu Liu
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0044376

Coevolution in RNA Molecules Driven by Selective Constraints: Evidence from 5S rRNA
Cited by: 12
Author(s): Nan Cheng, Yuanhui Mao, Yinggang Shi, Shiheng Tao
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0223844

Comparison of HIV-1 Vif and Vpu accessory proteins for delivery of polyepitope constructs harboring Nef, Gp160 and P24 using various cell penetrating peptides
Cited by: 14
Author(s): Kimia Kardani, Atieh Hashemi, Azam Bolhassani
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0031057

An Ensemble Classifier for Eukaryotic Protein Subcellular Location Prediction Using Gene Ontology Categories and Amino Acid Hydrophobicity
Cited by: 56
Author(s): Liqi Li, Yuan Zhang, Lingyun Zou, Changqing Li, Bo Yu, Xiaoqi Zheng, Yue Zhou
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0149682

Contrasting Patterns in the Evolution of Vertebrate MLX Interacting Protein (MLXIP) and MLX Interacting Protein-Like (MLXIPL) Genes
Cited by: 5
Author(s): Parmveer Singh, David M. Irwin
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0196662

Metal cofactor modulated folding and target recognition of HIV-1 NCp7
Cited by: 5
Author(s): Weitong Ren, Dongqing Ji, Xiaoqing Xu
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0142294

Genomic DNA Copy Number Aberrations, Histological Diagnosis, Oral Subsite and Aneuploidy in OPMDs/OSCCs
Cited by: 24
Author(s): Patrizio Castagnola, Gabriele Zoppoli, S Gandolfo, Massimiliano Monticone, Davide Malacarne, Gabriella Cirmena, David Brown, Cinzia Aiello, Massimo E. Maffei, Roberto Luiz Marino, Walter Giaretti, Monica Pentenero
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0171355

Impact of genetic variation on three dimensional structure and function of proteins
Cited by: 46
Author(s): Roshni Bhattacharya, Peter W. Rose, S.K. Burley, Andreas Prlić
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0015060

Genomic Characterization of the Guillain-Barre Syndrome-Associated Campylobacter jejuni ICDCCJ07001 Isolate
Cited by: 26
Author(s): Maojun Zhang, Lihua He, Qun Li, Honghe Sun, Yixin Gu, Yuanhai You, Fanliang Meng, Jianzhong Zhang
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0196993

Automated method to differentiate between native and mirror protein models obtained from contact maps
Cited by: 0
Author(s): Monika Kurczyńska, Małgorzata Kotulska
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0181688

Neonates’ responses to repeated exposure to a still face
Cited by: 13
Author(s): Emese Nagy, Karen Pilling, Rachel Watt, Attila Pál, Hajnalka Orvos
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0121065

Identification and Expression Analysis of the Interferon-Induced Protein with Tetratricopeptide Repeats 5 (IFIT5) Gene in Duck (Anas platyrhynchos domesticus)
Cited by: 10
Author(s): Bin Wang, Yang Chen, Chunyu Mu, Yanhui Su, Ran Liu, Zheng Huang, Yang Li, Qian Yu, Guobin Chang, Qi Xu, Guohong Chen
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0236466

Comparison of different calculation techniques for absorbed dose assessment in patient specific peptide receptor radionuclide therapy
Cited by: 8
Author(s): Domenico Finocchiaro, Salvatore Berenato, Valentina Bertolini, Gastone Castellani, Nico Lanconelli, Annibale Versari, Emiliano Spezi, Mauro Iori, Federica Fioroni, Elisa Grassi
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0192977

Identification of the S-transferase like superfamily bacillithiol transferases encoded by Bacillus subtilis
Cited by: 7
Author(s): Varahenage R. Perera, John D. Lapek, Gerald L. Newton, David J. Gonzalez, Kit Pogliano
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0162669

Integrated Left Ventricular Global Transcriptome and Proteome Profiling in Human End-Stage Dilated Cardiomyopathy
Cited by: 31
Author(s): Dilek Çolak, Ayodele Alaiya, Namik Kaya, Nzioka P. Muiya, Olfat Al‐Harazi, Zakia Shinwari, Editha Andres, Nduna Dzimiri
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0057675

LTR-Retrotransposons in R. exoculata and Other Crustaceans: The Outstanding Success of GalEa-Like Copia Elements
Cited by: 16
Author(s): Mathieu Piednoël, Tifenn Donnart, Caroline Esnault, Paula Graça, Dominique Higuet, Éric Bonnivard
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0219547

Acute myeloid leukemia immunopeptidome reveals HLA presentation of mutated nucleophosmin
Cited by: 35
Author(s): Rupa Narayan, Niclas Olsson, Lisa E. Wagar, Bruno C. Medeiros, Everett Meyer, Debra K. Czerwinski, Michael S. Khodadoust, Lichao Zhang, Liora Schultz, Mark M. Davis, Joshua E. Elias, Ronald Levy
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0078714

Analysis of the Protein Phosphotome of Entamoeba histolytica Reveals an Intricate Phosphorylation Network
Cited by: 10
Author(s): Tamanna Anwar, S. Gourinath
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0063124

Phylogenetic and Evolutionary Analysis of Chinese Leishmania Isolates Based on Multilocus Sequence Typing
Cited by: 32
Author(s): Chunying Zhang, Xiaojun Lu, Xiao-Qing Du, Jun Jian, Ling Shu, Ying Ma
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0018589

Serpin Induced Antiviral Activity of Prostaglandin Synthetase-2 against HIV-1 Replication
Cited by: 37
Author(s): James B. Whitney, Mohammed Asmal, Ralf Geiben-Lynn
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0075544

Dynamic Evolution of Rht-1 Homologous Regions in Grass Genomes
Cited by: 3
Author(s): Jing Wu, Xiuying Kong, Chao Shi, Yong–Qiang Gu, Cuiyun Jin, Li‐Zhi Gao, Jizeng Jia
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0164729

Analysis of the Antennal Transcriptome and Insights into Olfactory Genes in Hyphantria cunea (Drury)
Cited by: 36
Author(s): Long-Wa Zhang, Kae Won Kang, Shi-Chang Jiang, Yanan Zhang, Tiantian Wang, Jing Zhang, Long Sun, Yong Yang, Chang-Chun Huang, Liyu Jiang, De-Gui Ding
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0044969

Blue Light Acts as a Double-Edged Sword in Regulating Sexual Development of Hypocrea jecorina (Trichoderma reesei)
Cited by: 40
Author(s): Chia-Ling Chen, Hsiao-Che Kuo, Shu-Yu Tung, Paul Hsu, Chih‐Li Wang, Christian Seibel, Monika Schmoll, Ruey-Shyang Chen
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0194792

Comparative genomic and transcriptomic analysis of selected fatty acid biosynthesis genes and CNL disease resistance genes in oil palm
Cited by: 13
Author(s): Rozana Rosli, Nadzirah Amiruddin, Mohd Amin Ab Halim, Pek-Lan Chan, Kuang‐Lim Chan, Norazah Azizi, Priscilla E. Morris, Eng‐Ti Leslie Low, Meilina Ong‐Abdullah, Ravigadevi Sambanthamurthi, Rajinder Singh, Denis J. Murphy
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0223498

CsBZIP40, a BZIP transcription factor in sweet orange, plays a positive regulatory role in citrus bacterial canker response and tolerance.
Cited by: 18
Author(s): Qiang Li, Ruirui Jia, Wei Dou, Jingjing Qi, Xiujuan Qin, Yongyao Fu, Yongrui He, Shanchun Chen
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0008207

Unconsciously Perceived Fear in Peripheral Vision Alerts the Limbic System: A MEG Study
Cited by: 68
Author(s): Dimitri J. Bayle, Marie‐Anne Hénaff, Pierre Krolak‐Salmon
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0176045

Somatic copy number alterations in gastric adenocarcinomas among Asian and Western patients
Cited by: 27
Author(s): Steven E. Schumacher, Byoung Yong Shim, Giovanni Corso, Min‐Hee Ryu, Yoon‐Koo Kang, Franco Roviello, Gordon Saksena, Shouyong Peng, Ramesh A. Shivdasani, Adam J. Bass, Rameen Beroukhim
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0086210

Isolation and Characterization of a Dominant Dwarf Gene, D-h, in Rice
Cited by: 19
Author(s): Rihua Piao, Sang-Ho Chu, Wenzhu Jiang, Yoye Yu, Yongmei Jin, Mi-Ok Woo, Joohyun Lee, Sunghan Kim, Hee‐Jong Koh
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0118227

Molecular Assessment of Mating Strategies in a Population of Atlantic Spotted Dolphins
Cited by: 4
Author(s): Michelle L. Green, Denise L. Herzing, John W. Baldwin
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0197348

Antibacterial Effect of (2E,2E)-4,4-Trisulfanediylbis(but-2-enoic acid) against Staphylococcus aureus
Cited by: 5
Author(s): Tao Wu, Yina Huang, Yijun Chen, Min Zhang
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0099368

CELLO2GO: A Web Server for Protein subCELlular LOcalization Prediction with Functional Gene Ontology Annotation
Cited by: 295
Author(s): Chin Sheng Yu, Chih Wen Cheng, Wen Chi Su, Kuei Chung Chang, Shao-Wei Huang, Jiann Yang Hwang, Chih Heng Lu
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0148103

C6: A Monoclonal Antibody Specific for a Fibronectin Epitope Situated at the Interface between the Oncofoetal Extra-Domain B and the Repeat III8
Cited by: 5
Author(s): Elisa Ventura, Cinzia Cordazzo, Rodolfo Quarto, Luciano Zardi, Camillo Rosano
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0205096

National Mental Health Survey of India, 2016 - Rationale, design and methods
Cited by: 46
Author(s): Pradeep Banandur, Gopalkrishna Gururaj, Mathew Varghese, Vivek Benegal, Girish N Rao, Gautham Melur Sukumar, Senthil Amudhan, Banavaram Anniappan Arvind, Satish Chandra Girimaji, Kandavel Thennarasu, P Marimuthu, Kommu John Vijayasagar, Binukumar Bhaskarapillai, Jagadisha Thirthalli, Santosh Loganathan, Nitish Kumar, Paulomi M. Sudhir, Veena A. Sathyanarayana, Kangkan Pathak, Lokesh Kumar Singh, Ritambhara Mehta, Daya Ram, T. M. Shibukumar, Arun Kokane, Raj Kumar Singh, BS Chavan, Pradeep Sharma, Chellamuthu Ramasubramanian, Pronob Kumar Dalal, Pradeep Kumar Saha, Sonia P. Deuri, A. Giri, Abhay Kavishvar, Vinod Kumar Sinha, Jayakrishnan Thavody, Rajni Chatterji, Brogen Singh Akoijam, Subhash Das, Amita Kashyap, Renuka Sathish, M. Selvi, Shweta Singh, Vivek Agarwal, Raghunath Misra
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0085343

The Potential Role of As-sumo-1 in the Embryonic Diapause Process and Early Embryo Development of Artemia sinica
Cited by: 13
Author(s): Chu Bing, Feng Yao, Cheng Cheng, Yang Wu, Yanli Mei, Xuejie Li, Yan Liu, Peisheng Wang, Hui Lin, Xiangyang Zou
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0106707

A Comparative Metagenome Survey of the Fecal Microbiota of a Breast- and a Plant-Fed Asian Elephant Reveals an Unexpectedly High Diversity of Glycoside Hydrolase Family Enzymes
Cited by: 69
Author(s): Nele Ilmberger, Simon Güllert, Joana Dannenberg, Ulrich Rabausch, Jeremy Torres, Bernd Wemheuer, Malik Alawi, Anja Poehlein, Jennifer Chow, Dimitrij Turaev, Thomas Rattei, Christel Schmeisser, Jesper Salomon, Peter Bjarke Olsen, Rolf Daniel, Adam Grundhoff, Martin S. Borchert, Wolfgang R. Streit
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0110703

Identification of Antigenic Proteins of the Nosocomial Pathogen Klebsiella pneumoniae
Cited by: 7
Author(s): Sebastian Hoppe, Frank F. Bier, Markus von Nickisch‐Rosenegk
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0225233

The complete mitochondrial genome of the endangered Assam Roofed Turtle, Pangshura sylhetensis (Testudines: Geoemydidae): Genomic features and phylogeny
Cited by: 7
Author(s): Shantanu Kundu, Vikas Kumar, Kaomud Tyagi, Kailash Chandra
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0027217

Rust Secreted Protein Ps87 Is Conserved in Diverse Fungal Pathogens and Contains a RXLR-like Motif Sufficient for Translocation into Plant Cells
Cited by: 81
Author(s): Biao Gu, Shiv D. Kale, Qinhu Wang, Dinghe Wang, Qiaona Pan, Hua Cao, Yuling Meng, Zhensheng Kang, Brett M. Tyler, Weixing Shan
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0164272

Plasmodium knowlesi Skeleton-Binding Protein 1 Localizes to the ‘Sinton and Mulligan’ Stipplings in the Cytoplasm of Monkey and Human Erythrocytes
Cited by: 16
Author(s): Amuza Byaruhanga Lucky, Minoru Sakaguchi, Yuko Katakai, Shinya Kawai, Kazuhide Yahata, Thomas J. Templeton, O. Kaneko
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0094686

Analysis of the Robustness of Network-Based Disease-Gene Prioritization Methods Reveals Redundancy in the Human Interactome and Functional Diversity of Disease-Genes
Cited by: 11
Author(s): Emre Güney, Baldo Oliva
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0050959

Phylogenetic and Pathogenic Analyses of Avian Influenza A H5N1 Viruses Isolated from Poultry in Vietnam
Cited by: 11
Author(s): Dongming Zhao, Liang Liu, Yanbing Li, Yongping Jiang, Liling Liu, Hualan Chen
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0244202

Revising transcriptome assemblies with phylogenetic information
Cited by: 11
Author(s): August Guang, Mark Howison, Felipe Zapata, Charles E. Lawrence, Casey W. Dunn
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0095155

Language Universals Engage Broca's Area
Cited by: 18
Author(s): Iris Berent, Hong Pan, Xu Zhao, Jennifer A. Epstein, Monica Lee Bennett, Vibhas Deshpande, Ravi Seethamraju, Emily Stern
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0029104

Partner-Aware Prediction of Interacting Residues in Protein-Protein Complexes from Sequence Data
Cited by: 75
Author(s): Shandar Ahmad, Kenji Mizuguchi
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0072422

Trametes versicolor Protein YZP Activates Regulatory B Lymphocytes – Gene Identification through De Novo Assembly and Function Analysis in a Murine Acute Colitis Model
Cited by: 20
Author(s): Yen-Chou Kuan, Ying-Jou Wu, Chia-Liang Hung, Fuu Sheu
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0211893

A path analysis model suggesting the association of information and beliefs with self-efficacy in osteoporosis prevention among middle-aged and older community residents in urban Shanghai, China
Cited by: 2
Author(s): Yingchao Cui, Zuo-Feng Xu, Yue Shi, WU Ying-yan, Cheng Lv, Qishun Shen, Tian Shen, Yong Cai
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0037654

Purification and Characterization of a Novel Hypersensitive Response-Inducing Elicitor from Magnaporthe oryzae that Triggers Defense Response in Rice
Cited by: 66
Author(s): Mingjia Chen, Hongmei Zeng, Dewen Qiu, Lan-Ping Guo, Xiufen Yang, Huaixing Shi, Tingting Zhou, Jing Zhao
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0214545

Exosomal delivery of doxorubicin enables rapid cell entry and enhanced in vitro potency
Cited by: 113
Author(s): Christina Schindler, Andie Collinson, Carl Matthews, Amy Pointon, Lesley Jenkinson, Ralph Minter, Tristan J. Vaughan, Natalie J. Tigue
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0143010

A Versatile Strategy for Production of Membrane Proteins with Diverse Topologies: Application to Investigation of Bacterial Homologues of Human Divalent Metal Ion and Nucleoside Transporters
Cited by: 12
Author(s): Cheng Ma, Zhenyu Hao, Gerard H. M. Huysmans, Amelia Lesiuk, Per A. Bullough, Yingying Wang, Mark Bartlam, S.E.V. Phillips, James D. Young, Adrian Goldman, Stephen A. Baldwin, Vincent L. G. Postis
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0252138

Analysis on the hidden cost of prefabricated buildings based on FISM-BN
Cited by: 5
Author(s): Junlong Peng, Jing Zhou, Fanman Meng, Yan Yu
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0093275

Excavation of Pid3 Orthologs with Differential Resistance Spectra to Magnaporthe oryzae in Rice Resource
Cited by: 24
Author(s): Xiao Xu, Qiming Lv, Junjun Shang, Zhe Pang, Zhao-Nian Zhou, Jing Wang, Guicheng Jiang, Yong Tao, Qiu-Man Xu, Xiaobing Li, Xianfeng Zhao, Shigui Li, Junfeng Xu, Lihuang Zhu
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0244098

Long-term transcriptomic and proteomic effects in Sprague Dawley rat thyroid and plasma after internal low dose 131I exposure
Cited by: 6
Author(s): Malin Larsson, Nils Rudqvist, Johan Spetz, Emman Shubbar, Toshima Z. Parris, Britta Langen, Khalil Helou, Eva Forssell-Aronsson
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0232955

The sensitivity of transcriptomics BMD modeling to the methods used for microarray data normalization
Cited by: 4
Author(s): Roman Mezencev, Scott S. Auerbach
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0192433

Comparison of secretory signal peptides for heterologous protein expression in microalgae: Expanding the secretion portfolio for Chlamydomonas reinhardtii
Cited by: 35
Author(s): João Vitor Dutra Molino, João Carlos Monteiro de Carvalho, Stephen P. Mayfield
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0128066

Integrated Copy Number and Expression Analysis Identifies Profiles of Whole-Arm Chromosomal Alterations and Subgroups with Favorable Outcome in Ovarian Clear Cell Carcinomas
Cited by: 36
Author(s): Yuriko Uehara, Katsutoshi Oda, Yuji Ikeda, Takahiro Koso, Shingo Tsuji, Shozo Yamamoto, Kenichi Asada, Kenbun Sone, Reiko Kurikawa, Chinami Makii, Otoe Hagiwara, Michihiro Tanikawa, Daichi Maeda, Kosei Hasegawa, Shunsuke Nakagawa, Osamu Wada-Hiraike, Kei Kawana, Masashi Fukayama, Keiichi Fujiwara, Tetsu Yano, Yutaka Osuga, Tomoyuki Fujii, Hiroyuki Aburatani
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0206636

Exploring natural genetic variation in tomato sucrose synthases on the basis of increased kinetic properties
Cited by: 8
Author(s): Quy Dung Dinh, Richard Finkers, Adrie H. Westphal, W.M.A.M. van Dongen, Richard G. F. Visser, Luisa M. Trindade
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0135487

The Mechanism by which 146-N-Glycan Affects the Active Site of Neuraminidase
Cited by: 3
Author(s): Li Pi, Zhonghua Wang, Lijie Grace Zhang, Dongmei Li, Jianping Lin
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0199260

Genetic and biological characterization of H9N2 avian influenza viruses isolated in China from 2011 to 2014
Cited by: 21
Author(s): Rui Zhu, Danwen Xu, Xueqin Yang, Jianjun Zhang, Shifeng Wang, Huoying Shi, Xiufan Liu
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0025184

The Phytocyanin Gene Family in Rice (Oryza sativa L.): Genome-Wide Identification, Classification and Transcriptional Analysis
Cited by: 57
Author(s): Hongwei Ma, Hui Zhao, Zhi Li, Zhao Jie
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0067902

Improved Blue, Green, and Red Fluorescent Protein Tagging Vectors for S. cerevisiae
Cited by: 177
Author(s): Sidae Lee, Wendell A. Lim, Kurt S. Thorn
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0246666

Draft genome sequence of Marssonina coronaria, causal agent of apple blotch, and comparisons with the Marssonina brunnea and Marssonina rosae genomes
Cited by: 1
Author(s): Qiang Cheng, Junxiang Chen, Luo Zhao
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0207124

Climate change decreases suitable areas for rapeseed cultivation in Europe but provides new opportunities for white mustard as an alternative oilseed for biofuel production
Cited by: 23
Author(s): Rafael Jaime, Julio M. Alcántara, Antonio J. Manzaneda, Pedro J. Rey
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0208615

A survey of argasid ticks and tick-associated pathogens in the Peripheral Oases around Tarim Basin and the first record of Argas japonicus in Xinjiang, China
Cited by: 5
Author(s): Li Zhao, Xiaoyang Lin, Fĕi Li, Kairui Li, Bo He, Luyao Zhang, Jianyu Pan, Qiang-Rong Wang, Jia-Min Gao, Nicholas Johnson, Xin Yuan, Jizhou Lv, Shaoqiang Wu, Yonghong Liu
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0012330

Oligonucleotide Frequencies of Barcoding Loci Can Discriminate Species across Kingdoms
Cited by: 13
Author(s): Antariksh Tyagi, Sumit K. Bag, Virendra Shukla, Sribash Roy, Rakesh Tuli
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0027740

Epigenetic Modulation of miR-122 Facilitates Human Embryonic Stem Cell Self-Renewal and Hepatocellular Carcinoma Proliferation
Cited by: 58
Author(s): Christine Jung, Sushma Iyengar, Kimberly R. Blahnik, Tijess P. Ajuha, Joy X. Jiang, Peggy J. Farnham, Mark Α. Zern
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0066817

Tracing Evolutionary Footprints to Identify Novel Gene Functional Linkages
Cited by: 4
Author(s): Yong Chen, Li Yang, Yunfeng Ding, Shuyan Zhang, Tong Chuan He, Feng Mao, Congyan Zhang, Huina Zhang, Chaoxing Huo, Pingsheng Liu
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0040119

Characterization of Plasmids in a Human Clinical Strain of Lactococcus garvieae
Cited by: 24
Author(s): Mónica Aguado-Urda, Alicia Gibello, M. Mar Blanco, Guillermo López-Campos, M. Teresa Cutuli, J. F. Fernández‐Garayzábal
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0176537

Evaluation of immunogenicity and protective efficacy of recombinant outer membrane proteins of Haemophilus parasuis serovar 5 in a murine model
Cited by: 5
Author(s): Miao Li, Rujian Cai, Sooyeon Song, Zhi‐Yong Jiang, Yan Li, Hongchao Gou, Pinpin Chu, Chunling Li, Hua‐Ji Qiu
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0018381

Targeting Protein-Protein Interactions for Parasite Control
Cited by: 22
Author(s): Christina Taylor, Kerstin Fischer, Sahar Abubucker, Zhengyuan Wang, John Martin, Daojun Jiang, Marc Magliano, Marie‐Noëlle Rosso, Ben-Wen Li, Peter U. Fischer, Makedonka Mitreva
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0228196

A systematic scoping review of clinical indications for induction of labour
Cited by: 28
Author(s): Dominiek Coates, Angela Makris, Christine Catling, Amanda Henry, Vanessa Scarf, Nicole Watts, Deborah Fox, Purshaiyna Thirukumar, Vincent W. Wong, Hamish Russell, Caroline Homer
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0146995

Multiple Mating, Paternity and Complex Fertilisation Patterns in the Chokka Squid Loligo reynaudii
Cited by: 24
Author(s): Marie-José Naud, W. H. H. Sauer, Niall J. McKeown, Paul W. Shaw
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0008662

Evolution in Quantum Leaps: Multiple Combinatorial Transfers of HPI and Other Genetic Modules in Enterobacteriaceae
Cited by: 38
Author(s): Armand Paauw, Maurine A. Leverstein–van Hall, J. Verhoef, Ad C. Fluit
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0024267

Whole Genome PCR Scanning Reveals the Syntenic Genome Structure of Toxigenic Vibrio cholerae Strains in the O1/O139 Population
Cited by: 5
Author(s): Bo Pang, Xiaobo Zheng, Baowei Diao, Zhigang Cui, Haijian Zhou, Shouyi Gao, Biao Kan
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0002594

Human AQP5 Plays a Role in the Progression of Chronic Myelogenous Leukemia (CML)
Cited by: 65
Author(s): Young Kwang Chae, Sung Koo Kang, Myoung Sook Kim, Janghee Woo, Juna Lee, Steven S. Chang, Dong Wook Kim, Myungshin Kim, Sang-Won Park, Inho Kim, Bhumsuk Keam, Rhee Jiyoung, Nam Hee Koo, Gyeongsin Park, Soo Hyun Kim, Se-Eun Jang, Il Young Kweon, David Sidransky, Chulso Moon
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0069881

TaCIPK29, a CBL-Interacting Protein Kinase Gene from Wheat, Confers Salt Stress Tolerance in Transgenic Tobacco
Cited by: 94
Author(s): Xianwen Deng, Wei Hu, Shuya Wei, Shiyi Zhou, Fan Zhang, Jiapeng Han, Lihong Chen, Lei Yin, Jialu Feng, Bin Fang, Qingchen Luo, Shasha Li, Yunyi Liu, Guangxiao Yang, Guoqing He
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0173436

Fragment library screening identifies hits that bind to the non-catalytic surface of Pseudomonas aeruginosa DsbA1
Cited by: 17
Author(s): Biswaranjan Mohanty, Kieran Rimmer, Róisín M. McMahon, Stephen J. Headey, Mansha Vazirani, Stephen R. Shouldice, M. Coincon, Stephanie Tay, Craig J. Morton, Jamie S. Simpson, Jennifer L. Martin, M.J. Scanlon
Software Mentions: 1
Published: over 7 years ago

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