cran: vioplot | Projects | Ecosyste.ms: Papers

10.3390/jcm10112297

Complex Interplay of Genes Underlies Invasiveness in Fibrosarcoma Progression Model
Cited by: 0
Author(s): Michaela Kripnerová, Hamendra Singh Parmar, Jiří Šána, Alena Kopková, Lenka Radová, Sieghart Sopper, Krzysztof Biernacki, Jan Jedlička, M Kohoutová, Jitka Kuncová, Jan Peychl, Emil Rudolf, Miroslav Červinka, Zbyněk Houdek, Pavel Dvořák, Kateřina Houfková, Martin Pešta, Zdeněk Tůma, M. Dolejšová, Filip Tichánek, Václav Babuška, Martin Leba, Ondřej Slabý, Jiřı́ Hatina
Software Mentions: 3
Published: over 3 years ago

10.3389/fgene.2021.620740

Differentially Expressed Genes and Enriched Signaling Pathways in the Adipose Tissue of Obese People
Cited by: 5
Author(s): Zhenhua Lu, Ling‐Bing Meng, Zhen Sun, Xiaolei Shi, Weiwei Shao, Yangyang Zheng, Xinglei Yao, Jianguo Song
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pgen.1004868

Genome-Wide Analysis of DNA Methylation Dynamics during Early Human Development
Cited by: 202
Author(s): Hiroaki Okae, Hayato Chiba, Hitoshi Hiura, Hirofumi Hamada, Akiko Satô, Takafumi Utsunomiya, Hiroyuki Kikuchi, Hiroaki Yoshida, Atsushi Tanaka, Mikita Suyama, Takahiro Arima
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12957-021-02168-8

Immune infiltrating cells in cholangiocarcinoma may become clinical diagnostic markers: based on bioinformatics analysis
Cited by: 5
Author(s): Yong‐Wei Zhang, Sihan Chen, Jun Li, Wei Dai, Yeben Qian
Software Mentions: 2
Published: almost 4 years ago

10.3389/fonc.2021.666847

Identification of Mutator-Derived Alternative Splicing Signatures of Genomic Instability for Improving the Clinical Outcome of Cholangiocarcinoma
Cited by: 4
Author(s): Zijing Lin, Jie Gong, Guo‐Chao Zhong, Jie‐Jun Hu, Dong Cai, Lei Zhao, Zhibo Zhang
Software Mentions: 2
Published: over 3 years ago

10.7717/peerj.12114

Expression and prognosis of CDC45 in cervical cancer based on the GEO database
Cited by: 7
Author(s): Zikang He, Xiaojin Wang, Zhiming Yang, Ying Jiang, Luhui Li, Zheyao Song, Jiahui Wan, Jiangbo Shu, Naiwen Zhang, Rongjun Cui
Software Mentions: 2
Published: about 3 years ago

10.3389/fonc.2021.664032

Expression and Prognostic Significance of PD-L2 in Diffuse Large B-Cell Lymphoma
Cited by: 5
Author(s): Qianhui Gu, Jing Li, Zhuolin Chen, Jie Zhang, Hui Shen, Xiaobing Miao, Zhe Ying, Xiaohong Xu, Song He
Software Mentions: 2
Published: over 3 years ago

10.1186/s13072-016-0098-9

Histone macroH2A1.2 promotes metabolic health and leanness by inhibiting adipogenesis
Cited by: 27
Author(s): Valerio Pazienza, Concetta Panebianco, Francesca Rappa, Domenico Memoli, Michela Borghesan, Sara Cannito, Asami Oji, Giuseppe Mazza, Domenico Tamburrino, Giuseppe Fusai, Rosario Barone, Giulia Bolasco, Francesc Villarroya, Joan Villarroya, Kiyotaka Hatsuzawa, Francesco Cappello, Roberta Tarallo, Teruyuki Nakanishi, Manlio Vinciguerra
Software Mentions: 2
Published: about 8 years ago

10.3389/fonc.2021.682932

A Prognostic DNA Damage Repair Genes Signature and Its Impact on Immune Cell Infiltration in Glioma
Cited by: 11
Author(s): Guohui Wang, Huandi Zhou, Lei Tian, Tianfang Yan, Xuetao Han, Pengyu Chen, Haonan Li, Wenyan Wang, Zhiqing Xiao, Liubing Hou, Xiaoying Xue
Software Mentions: 2
Published: over 3 years ago

10.1017/S0031182013001182

Dog ownership, dog behaviour and transmission of <i>Echinococcus</i> spp. in the Alay Valley, southern Kyrgyzstan
Cited by: 46
Author(s): Freya van Kesteren, Alexander Mastin, Bermet Mytynova, Iskender Ziadinov, Belgees Boufana, Paul R. Torgerson, M. T. Rogan, Philip S. Craig
Software Mentions: 2
Published: about 11 years ago

10.1186/s12894-021-00875-8

Identification of novel biomarkers in Hunner’s interstitial cystitis using the CIBERSORT, an algorithm based on machine learning
Cited by: 11
Author(s): Kaining Lu, Shan Wei, Zhengyi Wang, Kerong Wu, Junhui Jiang, Zejun Yan, Yufeng Cheng
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0075448

NeSSM: A Next-Generation Sequencing Simulator for Metagenomics
Cited by: 56
Author(s): Ben Jia, Xuan Liu, Kaiye Cai, Zhiqiang Hu, Liangxiao Ma, Chaochun Wei
Software Mentions: 2
Published: about 11 years ago

10.1186/s12864-017-4312-3

Weighted likelihood inference of genomic autozygosity patterns in dense genotype data
Cited by: 9
Author(s): Alexandra Blant, Michelle Kwong, Zachary A. Szpiech, Trevor J. Pemberton
Software Mentions: 2
Published: almost 7 years ago

10.3389/fpsyg.2018.00325

Using Anchoring Vignettes to Adjust Self-Reported Personality: A Comparison Between Countries
Cited by: 10
Author(s): Selina Weiss, Richard D. Roberts
Software Mentions: 2
Published: over 6 years ago

10.1186/s41065-020-00166-6

Immunological analysis and differential genes screening of venous thromboembolism
Cited by: 2
Author(s): Lina Gao, Qiang Li, Jianqin Xie, Wan-Xia Yang, Chongge You
Software Mentions: 2
Published: almost 4 years ago

10.3390/insects10050126

Life History Effects Linked to an Advantage for wAu Wolbachia in Drosophila
Cited by: 12
Author(s): Li‐Jun Cao, Weibin Jiang, Ary A. Hoffmann
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-90673-x

Dietary and Plasmodium challenge effects on the cuticular hydrocarbon profile of Anopheles albimanus
Cited by: 2
Author(s): Fabiola Claudio-Piedras, Benito Recio-Tótoro, Jorge Cime-Castillo, Renaud Condé, Massimo E. Maffei, Humberto Lanz‐Mendoza
Software Mentions: 2
Published: over 3 years ago

10.18632/aging.104041

Patrolling monocytes inhibit osteosarcoma metastasis to the lung
Cited by: 8
Author(s): Ting Chen, Lin Zhao
Software Mentions: 2
Published: about 4 years ago

10.3389/fimmu.2021.636614

Integrative Transcriptomic, Proteomic and Functional Analysis Reveals ATP1B3 as a Diagnostic and Potential Therapeutic Target in Hepatocellular Carcinoma
Cited by: 12
Author(s): Shanshan Lu, Shenglan Cai, Peng Xu, Ruochan Cheng, Yiya Zhang
Software Mentions: 2
Published: over 3 years ago

10.3390/ani11030870

Comparison of Genetic Merit for Weight and Meat Traits between the Polled and Horned Cattle in Multiple Beef Breeds
Cited by: 5
Author(s): Imtiaz A. S. Randhawa, Michael McGowan, Laércio R. Porto-Neto, Ben J. Hayes, Russell E. Lyons
Software Mentions: 2
Published: over 3 years ago

10.1186/s12935-021-01938-4

NEIL3 may act as a potential prognostic biomarker for lung adenocarcinoma
Cited by: 14
Author(s): Chun‐Mei Zhao, Jian Liu, Haomiao Zhou, Qian Xin, Hui Sun, Xuewen Chen, Miaosen Zheng, Tingting Bian, Lei Liu, Yifei Liu, Jianguo Zhang
Software Mentions: 2
Published: over 3 years ago

10.3389/fgene.2020.605767

The Construction and Analysis of Tumor-Infiltrating Immune Cells and ceRNA Networks in Bladder Cancer
Cited by: 9
Author(s): Aimin Jiang, Na Liu, Shengjie Bai, Jingjing Wang, Huan Gao, Xiaoqiang Zheng, Xiao Fu, Mengdi Ren, Xiaoni Zhang, Tao Tian, Zhiping Ruan, Yu Yao, Xuan Liang
Software Mentions: 2
Published: almost 4 years ago

10.1002/1878-0261.12570

High‐throughput proteomic analysis of <scp>FFPE</scp> tissue samples facilitates tumor stratification
Cited by: 92
Author(s): Yi Zhu, Tobias Weiss, Qiushi Zhang, Rui Sun, Bo Wang, Xiao Yi, Zhicheng Wu, Huanhuan Gao, Xue Cai, Guan Ruan, Tiansheng Zhu, Chao Xu, Sai Lou, Xiaoyan Yu, Ludovic Gillet, Peter Blattmann, Karim Saba, Christian Daniel Fankhauser, Michael B. Schmid, Dorothea Rutishauser, Jelena Ljubicic, Ailsa J. Christiansen, Christine Fritz, Niels J. Rupp, Cédric Poyet, Elisabeth J. Rushing, Michael Weller, Patrick Roth, Eugenia Haralambieva, Silvia Höfer, Chen Chen, Wolfram Jochum, Xiaofei Gao, Xiaodong Teng, Lirong Chen, Qing Zhong, Peter J. Wild, Ruedi Aebersold, Tiannan Guo
Software Mentions: 2
Published: about 5 years ago

10.1038/srep38588

Identification of critical paralog groups with indispensable roles in the regulation of signaling flow
Cited by: 8
Author(s): Dezső Módos, Johanne Brooks, Dávid Fazekas, Eszter Ari, Tibor Vellai, Péter Csermely, Tamás Korcsmáros, Katalin Lenti
Software Mentions: 1
Published: almost 8 years ago

10.3389/fpls.2018.01149

The Capacity to Buffer and Sustain Imbalanced D-Subgenome Chromosomes by the BBAA Component of Hexaploid Wheat Is an Evolved Dominant Trait
Cited by: 3
Author(s): Xin Deng, Yan Sha, Zhenling Lv, Ying Wu, Zhang Ai, Fang Wang, Liu B
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0077117

The Association of Alternate VEGF Ligands with Resistance to Anti-VEGF Therapy in Metastatic Colorectal Cancer
Cited by: 97
Author(s): Christopher H. Lieu, Hai T. Tran, Zhi Qin Jiang, Muling Mao, Michael J. Overman, Edward H. Lin, Cathy Eng, Jeffrey S. Morris, Lee M. Ellis, John V. Heymach, Scott Kopetz
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0206683

Copy number variation in the susceptibility to systemic lupus erythematosus
Cited by: 9
Author(s): Fernanda Bueno Barbosa, Milena Simioni, Cláudia Emília Vieira Wiezel, Fábio R. Torres, Miriam Coelho Molck, Melvin M. Bonilla, Tânia Kawasaki de Araujo, Eduardo Antônio Donadi, Vera Lúcia Gil-da-Silva-Lopes, Bernardo Lemos, Aguinaldo Luíz Simões
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-017-05794-z

RADseq provides evidence for parallel ecotypic divergence in the autotetraploid Cochlearia officinalis in Northern Norway
Cited by: 21
Author(s): Marie Kristine Brandrud, Ovidiu Paun, María Teresa Cáceres Lorenzo, Inger Nordal, Anne K. Brysting
Software Mentions: 1
Published: over 7 years ago

10.1186/s12859-015-0757-z

SCExV: a webtool for the analysis and visualisation of single cell qRT-PCR data
Cited by: 17
Author(s): Stefan Lang, Amol Ugale, Eva Erlandsson, Göran Karlsson, David Bryder, Shamit Soneji
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-020-79425-5

Tailored co-localization analysis of intracellular microbes and punctum-distributed phagosome–lysosome pathway proteins using ImageJ plugin EzColocalization
Cited by: 2
Author(s): Kang Wu, Bo Yan, Douglas B. Lowrie, Tao Li, Xiao‐Yong Fan
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0117617

Use of 16S rRNA Gene for Identification of a Broad Range of Clinically Relevant Bacterial Pathogens
Cited by: 258
Author(s): Ramya Srinivasan, Ulaş Karaöz, Marina Volegova, Joanna K. MacKichan, Midori Kato‐Maeda, Steve Miller, R Nadarajan, Eoin L. Brodie, Susan V. Lynch
Software Mentions: 1
Published: almost 10 years ago

10.3390/mps3040064

Become Competent within One Day in Generating Boxplots and Violin Plots for a Novice without Prior R Experience
Cited by: 50
Author(s): Kejin Hu
Software Mentions: 1
Published: about 4 years ago

10.1186/s13068-018-1106-z

Methane-yielding microbial communities processing lactate-rich substrates: a piece of the anaerobic digestion puzzle
Cited by: 52
Author(s): Anna Detman, Damian Mielecki, Łukasz Pleśniak, Michał Bucha, Marek Janiga, I. Matyasik, Aleksandra Chojnacka, Mariusz-Orion Jędrysek, Mieczysław Blaszczyk, Anna Sikora
Software Mentions: 1
Published: over 6 years ago

Ecosyste.ms: Papers

Projects: cran: vioplot

Papers Mentioning vioplot 133