Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: vegan

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/vegan

Community Ecology Package
87 versions
Latest release: about 2 years ago
202 dependent packages
91,351 downloads last month

Papers Mentioning vegan 6,903

10.3390/jpm11010035
Altered Gut Microbiota in Irritable Bowel Syndrome and Its Association with Food Components
Cited by: 23
Author(s): Zahra Amirkhanzadeh Barandouzi, Joochul Lee, Kendra Maas, Angela Starkweather, Xiaomei Cong
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0166794
High Diversity and Variability in the Vaginal Microbiome in Women following Preterm Premature Rupture of Membranes (PPROM): A Prospective Cohort Study
Cited by: 58
Author(s): Teenus Jayaprakash, Emily Wagner, Julie van Schalkwyk, Arianne Albert, Janet E. Hill, Deborah Money
Software Mentions: 1
Published: about 8 years ago
10.1038/s41598-019-51341-3
Metabarcoding assessment of prokaryotic and eukaryotic taxa in sediments from Stellwagen Bank National Marine Sanctuary
Cited by: 13
Author(s): Jennifer M. Polinski, John Bucci, Mark Gasser, Andrea Bodnár
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0100061
Extreme Heterogeneity in Parasitism Despite Low Population Genetic Structure among Monarch Butterflies Inhabiting the Hawaiian Islands
Cited by: 11
Author(s): Amanda A. Pierce, Jacobus C. de Roode, Sonia Altizer, Rebecca A. Bartel
Software Mentions: 1
Published: over 10 years ago
10.1016/j.mex.2021.101407
Calculating cumulative effects in GIS using a stepless multivariate model
Cited by: 1
Author(s): Lars Erikstad, Vegar Bakkestuen
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0192967
Manipulation of the rhizosphere microbial community through application of a new bio-organic fertilizer improves watermelon quality and health
Cited by: 45
Author(s): Jia Zhao, Jiang Liu, Liu Hong, Jing Huang, Zhe Chen, Yuanjun Nie, Changbiao Wang, Yuguo Wang
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pone.0135352
Key Edaphic Properties Largely Explain Temporal and Geographic Variation in Soil Microbial Communities across Four Biomes
Cited by: 78
Author(s): Kathryn M. Docherty, Hannah M. Borton, N. J. Espinosa, Martha Gebhardt, Juliana Gil-Loaiza, Jessica Gutknecht, Patrick Maes, Brendon M. Mott, John Jacob Parnell, Gayle Purdy, Pedro A P Rodrigues, Lee F. Stanish, Olivia N. Walser, Rachel E. Gallery
Software Mentions: 1
Published: about 9 years ago
10.1038/s41598-019-52602-x
Effect of nitrogen application rate on soil fungi community structure in a rice-fish mutualistic system
Cited by: 7
Author(s): Shaohong Cai, Wenzhen Lv, Huiling Zhu, Deshan Zhang, Zhang Fu, Hanlin Zhang, Shan Xu
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0139437
Assessment of Bacterial Community Assembly Patterns and Processes in Pig Manure Slurry
Cited by: 12
Author(s): Priyanka Kumari, Hee Sun Choi, Sartika Indah Amalia Sudiarto
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0210357
Environmental DNA metabarcoding for fish community analysis in backwater lakes: A comparison of capture methods
Cited by: 86
Author(s): Kanji Fujii, Hideyuki Doi, Shiro Matsuoka, Mariko Nagano, Hirotoshi Sato, Hiroki Yamanaka
Software Mentions: 1
Published: almost 6 years ago
10.1038/s41598-019-53602-7
Reduced-tillage management enhances soil properties and crop yields in a alfalfa-corn rotation: Case study of the Songnen Plain, China
Cited by: 13
Author(s): Jishan Chen, Ruifen Zhu, Qiang Zhang, Xiaolei Kong, Dongdong Sun
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-019-53976-8
Lactation and menstruation shift the vaginal microbiota in captive rhesus monkeys to be more similar to the male urethral microbiota
Cited by: 8
Author(s): Luisa K. Hallmaier–Wacker, Simone Lüert, Christian Roos, Sascha Knauf
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-019-54467-6
Integrative analysis of the gut microbiota and metabolome in rats treated with rice straw biochar by 16S rRNA gene sequencing and LC/MS-based metabolomics
Cited by: 23
Author(s): Jiahong Han, Jun Meng, Shuya Chen, Chuang Li
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-019-54452-z
Succession in arbuscular mycorrhizal fungi can be attributed to a chronosequence of Cunninghamia lanceolata
Cited by: 20
Author(s): Nini Lu, Xuelei Xu, Ping Wang, Peng Zhang, Baoming Ji, Xinjie Wang
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-019-55490-3
The pitfalls of biodiversity proxies: Differences in richness patterns of birds, trees and understudied diversity across Amazonia
Cited by: 20
Author(s): Camila Duarte Ritter, Søren Faurby, Dominic J. Bennett, Luciano N. Naka, Hans ter Steege, Alexander Zizka, Quiterie Haenel, R. Henrik Nilsson, Alexandre Antonelli
Software Mentions: 1
Published: almost 5 years ago
10.1093/plankt/fbab007
Seasonal dynamics and life histories of three sympatric species of <i>Pseudocalanus</i> in two Svalbard fjords
Cited by: 7
Author(s): E. A. Ershova, Margot Ulfsdatter Nyeggen, D. A. Yurikova, Janne E. Søreide
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-019-55946-6
The Otranto Channel (South Adriatic Sea), a hot-spot area of plankton biodiversity: pelagic polychaetes
Cited by: 7
Author(s): Rosanna Guglielmo, A. Bergamasco, Roberta Minutoli, Francesco Paolo Patti, Genuario Belmonte, Nunziacarla Spanò, Giacomo Zagami, Vincenzo Bonanzinga, Letterio Guglielmo, Antonia Granata
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pone.0143479
Insect Pollinators in Iowa Cornfields: Community Identification and Trapping Method Analysis
Cited by: 25
Author(s): Margaret J. Wheelock, Matthew E. O’Neal
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-019-55756-w
Sea anemone and clownfish microbiota diversity and variation during the initial steps of symbiosis
Cited by: 6
Author(s): Natacha Roux, Raphaël Lami, Pauline Salis, Kévin Magré, Pascal Romans, Patrick Masanet, David Lecchini, Vincent Laudet
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pone.0098741
Changes in Abundance of Oral Microbiota Associated with Oral Cancer
Cited by: 266
Author(s): Brian L. Schmidt, Justin Kuczynski, Aditi Bhattacharya, Bing Huey, Patricia Corby, Erica Queiroz, K Florence Nightingale, Alexander Ross Kerr, Mark D. DeLacure, Ratna Veeramachaneni, Adam B. Olshen, Donna G. Albertson, Muy-Teck Teh
Software Mentions: 1
Published: over 10 years ago
10.1098/rsif.2016.0296
Detailed temporal structure of communication networks in groups of songbirds
Cited by: 17
Author(s): Dan Stowell, Lisa Gill, David F. Clayton
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0165761
Floral Scent Mimicry and Vector-Pathogen Associations in a Pseudoflower-Inducing Plant Pathogen System
Cited by: 18
Author(s): Scott H. McArt, Timothy D. Miles, Cesar Rodriguez‐Saona, A. M. C. Schilder, Lynn S. Adler, Matthew J. Grieshop
Software Mentions: 1
Published: about 8 years ago
10.1186/s12967-020-02282-3
Characteristics of the urinary microbiome in kidney stone patients with hypertension
Cited by: 27
Author(s): Fengping Liu, Nan Zhang, Jiang Peng, Qixiao Zhai, Chen Li, Deshui Yu, Yan Wang, Yuwei Zhang, Longxian Lv, Xinyu Xu, Na Feng
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-57553-2
Predicting changes in bee assemblages following state transitions at North American dryland ecotones
Cited by: 6
Author(s): Melanie R. Kazenel, Karen Wright, Julieta Bettinelli, Terry Griswold, Kenneth D. Whitney, Jennifer A. Rudgers
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pone.0168096
VH1 Family Immunoglobulin Repertoire Sequencing after Allogeneic Hematopoietic Stem Cell Transplantation
Cited by: 6
Author(s): Maya K. Sethi, Felicitas Thol, Michael Stadler, Michael Heuser, Arnold Ganser, Christian Koenecke, Oliver Pabst
Software Mentions: 1
Published: almost 8 years ago
10.1167/jov.20.13.12
If painters give you lemons, squeeze the knowledge out of them. A study on the visual perception of the translucent and juicy appearance of citrus fruits in paintings
Cited by: 5
Author(s): Francesca Di Cicco, Maarten Wijntjes, Sylvia C. Pont
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0053332
Genetic and Morphometric Divergence of an Invasive Bird: The Introduced House Sparrow (Passer domesticus) in Brazil
Cited by: 16
Author(s): Marcos Robalinho Lima, Regina H. Macêdo, Thaís L. F. Martins, Aaron W. Schrey, Lynn B. Martin, Staffan Bensch
Software Mentions: 1
Published: almost 12 years ago
10.1038/s41598-020-73628-6
Identifying patterns in the multitrophic community and food-web structure of a low-turbidity temperate estuarine bay
Cited by: 8
Author(s): Ho Kang, Changseong Kim, Dong‐Young Kim, Young Jae Lee, Hyun Je Park, Goutam Kumar Kundu, Young Kyun Kim, Riaz Bibi, Jaebin Jang, Kwang-Hun Lee, Hyun Woo Kim, Sung Gyu Yun, Hee‐Yong Kim, Chang‐Keun Kang
Software Mentions: 1
Published: about 4 years ago
10.1038/s41598-020-73938-9
Evidence for signatures of ancient microbial life in paleosols
Cited by: 5
Author(s): Katharina Frindte, Eva Lehndorff, Stefan Vlaminck, Katharina A. Werner, Martin Kehl, Farhad Khormali, Claudia Knief
Software Mentions: 1
Published: about 4 years ago
10.3390/md12063381
Effects of Long Chain Fatty Acid Synthesis and Associated Gene Expression in Microalga Tetraselmis sp.
Cited by: 55
Author(s): T. Catalina Adarme-Vega, Skye R. Thomas‐Hall, David K. Y. Lim, Peer M. Schenk
Software Mentions: 1
Published: over 10 years ago
10.1038/s41598-020-74958-1
Microbial community dynamics during alfalfa silage with or without clostridial fermentation
Cited by: 36
Author(s): Rongrong Li, Di Jiang, Mingli Zheng, Pengjiao Tian, Mingli Zheng, Chuncheng Xu
Software Mentions: 1
Published: about 4 years ago
10.1038/s41598-020-75336-7
The water chemistry and microbiome of household wells in Medawachchiya, Sri Lanka, an area with high prevalence of chronic kidney disease of unknown origin (CKDu)
Cited by: 16
Author(s): Liza McDonough, Karina Meredith, Chandima Nikagolla, Ryan J. Middleton, Jiangning Tan, Asanga Ranasinghe, Frédéric Sierro, Richard B. Bánati
Software Mentions: 1
Published: about 4 years ago
10.1038/s41598-020-74719-0
Human milk microbiota in sub-acute lactational mastitis induces inflammation and undergoes changes in composition, diversity and load
Cited by: 15
Author(s): Alba Boix-Amorós, María Teresa Hernández‐Aguilar, Alejandro Artacho, María Carmen Collado, Álex Mira
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pone.0168417
Joint Effect of Habitat Identity and Spatial Distance on Spiders’ Community Similarity in a Fragmented Transition Zone
Cited by: 8
Author(s): Yoni Gavish, Yaron Ziv
Software Mentions: 1
Published: almost 8 years ago
10.3390/md17120671
Marine Bacteria from Rocas Atoll as a Rich Source of Pharmacologically Active Compounds
Cited by: 9
Author(s): Karen Velasco‐Alzate, Anelize Bauermeister, Marcelo Marucci Pereira Tangerina, Tito Monteiro da Cruz Lotufo, Marcelo J. P. Ferreira, Paula Christine Jimenez, Gabriel Padilla, Norberto P. Lopes, Letı́cia V. Costa-Lotufo
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-020-76003-7
Vaginal microbiota diversity and paucity of Lactobacillus species are associated with persistent hrHPV infection in HIV negative but not in HIV positive women
Cited by: 13
Author(s): Eileen Dareng, Bing Ma, Sally N. Adebamowo, Ayo Famooto, Jacques Ravel, Paul Pharoah, Clement Adebamowo
Software Mentions: 1
Published: about 4 years ago
10.1038/s41598-020-75910-z
Early medieval genetic data from Ural region evaluated in the light of archaeological evidence of ancient Hungarians
Cited by: 12
Author(s): Veronika Csáky, Dániel Gerber, Bea Szeifert, Balázs Egyed, Balázs Stégmár, Сергей Геннадьевич Боталов, Ivan V. Grudochko, Н. П. Матвеева, А. С. Зеленков, Anastasiia Viktorovna Sleptsova, Rimma D. Goldina, Andrey V. Danich, Balázs Gusztáv Mende, Attila Türk, Anna Szécsényi-Nagy
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pone.0238882
Temporal changes in the fecal bacterial community in Holstein dairy calves from birth through the transition to a solid diet
Cited by: 15
Author(s): Meagan L. Hennessy, Nagaraju Indugu, Bonnie Vecchiarelli, Joseph S. Bender, C Pappalardo, Miranda Leibstein, John D. Toth, Ananya Katepalli, Satvik Garapati, Dipti Pitta
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pone.0170336
Lower Mesophotic Coral Communities (60-125 m Depth) of the Northern Great Barrier Reef and Coral Sea
Cited by: 31
Author(s): Norbert Englebert, Pim Bongaerts, Paul Muir, Kyra B. Hay, Michel Pichon, Ove Hoegh‐Guldberg
Software Mentions: 1
Published: almost 8 years ago
10.1038/s41598-020-76833-5
The importance of common and the irrelevance of rare species for partition the variation of community matrix: implications for sampling and conservation
Cited by: 10
Author(s): Leandro Schlemmer Brasil, Thiago Bernardi Vieira, André Felipe Alves de Andrade, Rafael Costa Bastos, Luciano Fogaça de Assis Montag, Leandro Juen
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pone.0189104
Two decades of climate driving the dynamics of functional and taxonomic diversity of a tropical small mammal community in western Mexico
Cited by: 12
Author(s): Edgard David Mason-Romo, Ariel A. Farías, Gerardo Ceballos
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41598-020-77240-6
Plant health status effects on arbuscular mycorrhizal fungi associated with Lavandula angustifolia and Lavandula intermedia infected by Phytoplasma in France
Cited by: 3
Author(s): Marie Noëlle Binet, Camille Marchal, Justine Lipuma, R. Geremia, Olivier Bagarri, Bert Candaele, Delphine Fraty, Benjamin David, Sophie Périgon, Viviane Barbreau, Bello Mouhamadou
Software Mentions: 1
Published: about 4 years ago
10.1038/s41598-020-77537-6
Citizen science data reveals the need for keeping garden plant recommendations up-to-date to help pollinators
Cited by: 3
Author(s): Helen Anderson, Anne-Marie Robinson, Advaith Siddharthan, Nirwan Sharma, Helen Bostock, Andrew Salisbury, Stuart P. M. Roberts, René van der Wal
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0018603
Behavioural Thermoregulatory Tactics in Lacustrine Brook Charr, Salvelinus fontinalis
Cited by: 33
Author(s): Andrea Bertolo, Marc Pépino, J. Stephens Adams, Pierre Magnan
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0247633
Evaluation of the orally administered calcium alginate aerogel on the changes of gut microbiota and hepatic and renal function of Wistar rats
Cited by: 6
Author(s): Mohammad A. A. Al-Najjar, Tamara Athamneh, Reem Fawaz Abutayeh, Iman A. Basheti, Claudia Leopold, Pavel Gurikov, Ирина Смирнова
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0238550
Recovery and variation of the coastal fish community following a cold intrusion event in the Penghu Islands, Taiwan
Cited by: 3
Author(s): Hungyen Chen, Ching-Yi Chen, Kwang‐Tsao Shao
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pntd.0006709
Field-collected Triatoma sordida from central Brazil display high microbiota diversity that varies with regard to developmental stage and intestinal segmentation
Cited by: 30
Author(s): Joana L. Oliveira, José Cury, Rodrigo Gurgel-Gonçalves, Ana C. Bahia, Fernando A. Monteiro
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pntd.0005963
Impact of Enterobius vermicularis infection and mebendazole treatment on intestinal microbiota and host immune response
Cited by: 22
Author(s): Chien‐Chih Yang, Chao Liang, Chia-Feng Lin, Chiung-Tzu Hsiao, Ching‐Tien Peng, Hung‐Chih Lin, Jan‐Gowth Chang
Software Mentions: 1
Published: about 7 years ago
10.1038/s41598-020-79157-6
Picophytoplankton dynamics in a large temperate estuary and impacts of extreme storm events
Cited by: 25
Author(s): Ryan W. Paerl, Rebecca E. Venezia, Joel J. Sanchez, Hans W. Paerl
Software Mentions: 1
Published: almost 4 years ago
10.3390/md19070353
Diversity and Antimicrobial Activity of Vietnamese Sponge-Associated Bacteria
Cited by: 13
Author(s): Ton That Huu Dat, Nguyễn Thị Kim Cúc, Phạm Việt Cường, Hauke Smidt, Detmer Sipkema
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pntd.0002507
Mosquito Vector Diversity across Habitats in Central Thailand Endemic for Dengue and Other Arthropod-Borne Diseases
Cited by: 87
Author(s): Panpim Thongsripong, Amy Green, Pattamaporn Kittayapong, Durrell D. Kapan, Bruce A. Wilcox, Shannon N. Bennett
Software Mentions: 1
Published: about 11 years ago
10.1038/s41598-020-80642-1
Particulate matter emission sources and meteorological parameters combine to shape the airborne bacteria communities in the Ligurian coast, Italy
Cited by: 5
Author(s): Giorgia Palladino, Pietro Morozzi, Elena Biagi, Erika Brattich, Silvia Turroni, Simone Rampelli, Laura Tositti, Marco Candela
Software Mentions: 1
Published: almost 4 years ago
10.3390/nu10020230
Inadequate Iodine Intake in Population Groups Defined by Age, Life Stage and Vegetarian Dietary Practice in a Norwegian Convenience Sample
Cited by: 58
Author(s): Anne Lise Brantsæter, Helle Katrine Knutsen, Nina Cathrine Johansen, Kristine Aastad Nyheim, Iris Erlund, Helle Margrete Meltzer, Sigrun Henjum
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41598-020-80027-4
Wetland hydroperiod predicts community structure, but not the magnitude of cross-community congruence
Cited by: 6
Author(s): Jody Daniel, Rebecca C. Rooney
Software Mentions: 1
Published: almost 4 years ago
10.7717/peerj.7906
Artificial substrata increase pond farming density of grass carp (<i>Ctenopharyngodon idella</i>) by increasing the bacteria that participate in nitrogen and phosphorus cycles in pond water
Cited by: 5
Author(s): Zhifei Li, Guangjun Wang, Ermeng Yu, Kai Zhang, Deguang Yu, Wangbao Gong, Jun Xie
Software Mentions: 1
Published: about 5 years ago
10.7717/peerj.1014
Influence of sediment characteristics on the composition of soft-sediment intertidal communities in the northern Gulf of Mexico
Cited by: 8
Author(s): Kyle E. Coblentz, Jessica R. Henkel, Bryan J. Sigel, Caz M. Taylor
Software Mentions: 1
Published: over 9 years ago
10.3390/md15040095
A Place to Call Home: An Analysis of the Bacterial Communities in Two Tethya rubra Samaai and Gibbons 2005 Populations in Algoa Bay, South Africa
Cited by: 10
Author(s): Samantha C. Waterworth, Meesbah Jiwaji, Jarmo-Charles J. Kalinski, Shirley Parker-Nance, Rosemary A. Dorrington
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-020-80379-x
Physiological responses of Siberian sturgeon (Acipenser baerii) juveniles fed on full-fat insect-based diet in an aquaponic system
Cited by: 23
Author(s): Matteo Zarantoniello, Basilio Randazzo, Valentina Nozzi, Cristina Truzzi, Elisabetta Giorgini, Gloriana Cardinaletti, Lorenzo Freddi, Stefano Ratti, Federico Girolametti, Andrea Osimani, Valentina Notarstefano, Vesna Milanović, Paola Riolo, Nunzio Isidoro, Francesca Tulli, Giorgia Gioacchini, Iacopo Olivotto
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-021-81158-y
Metabolomics-based analysis of miniature flask contents identifies tobacco mixture use among the ancient Maya
Cited by: 13
Author(s): Mario Zimmermann, Korey J. Brownstein, Luis Pantoja Dïaz, Iliana Ancona Aragón, Scott R. Hutson, Barry Kidder, Shannon Tushingham, David R. Gang
Software Mentions: 1
Published: almost 4 years ago
10.7717/peerj.10866
Characteristics of planktonic and sediment bacterial communities in a heavily polluted urban river
Cited by: 3
Author(s): Heqing Huang, Jianhui Liu, Fanghui Zhang, Kangwen Zhu, Chunhua Yang, Qiujie Xiang, Bo Liu
Software Mentions: 1
Published: over 3 years ago
10.7717/peerj.7553
Marked variations in gut microbiota and some innate immune responses of fresh water crayfish, marron (<i>Cherax cainii</i>, Austin 2002) fed dietary supplementation of <i>Clostridium butyricum</i>
Cited by: 13
Author(s): Javed Foysal, Thi Thu Thuy Nguyen, Reaz Chaklader, Muhammad A.B. Siddik, Chin Yen Tay, Ravi Fotedar, Sanjay Kumar Gupta
Software Mentions: 1
Published: about 5 years ago
10.7717/peerj.1556
Historical and current introgression in a Mesoamerican hummingbird species complex: a biogeographic perspective
Cited by: 22
Author(s): Rosa Alicia Jiménez, Juan Francisco Ornelas
Software Mentions: 1
Published: almost 10 years ago
10.1038/s41598-021-82060-3
Effects of integrated biocontrol on bacterial wilt and rhizosphere bacterial community of tobacco
Cited by: 18
Author(s): Yun Hu, Yanyan Li, Xiaomin Yang, Chunli Li, Lin Wang, Jia‐Xun Feng, Shouwen Chen, Xihong Li, Yong Yang
Software Mentions: 1
Published: almost 4 years ago
10.7717/peerj.1152
Sixty years of change in avian communities of the Pacific Northwest
Cited by: 6
Author(s): Jenna R. Curtis, W. Douglas Robinson
Software Mentions: 1
Published: over 9 years ago
10.7717/peerj.4226
Boundaries in ground beetle (Coleoptera: Carabidae) and environmental variables at the edges of forest patches with residential developments
Cited by: 4
Author(s): Doreen E. Davis, Sara A. Gagné
Software Mentions: 1
Published: almost 7 years ago
10.7717/peerj.4231
Ant mosaics in Bornean primary rain forest high canopy depend on spatial scale, time of day, and sampling method
Cited by: 16
Author(s): Kalsum M. Yusah, William A. Foster, Glen Reynolds, Tom M. Fayle
Software Mentions: 1
Published: almost 7 years ago
10.7717/peerj.3677
Comparison of chemical compounds associated with sclerites from healthy and diseased sea fan corals (<i>Gorgonia ventalina</i>)
Cited by: 3
Author(s): Carlos Toledo-Hernández, Claudia Patricia Ruiz-Diaz, Liz M. Díaz-Vázquez, Vanessa Santiago-Cárdenas, Derick N Rosario-Berrios, Derek M. García-Almedina, Loretta Roberson
Software Mentions: 1
Published: about 7 years ago
10.7717/peerj.9375
Response of arbuscular mycorrhizal fungal community in soil and roots to grazing differs in a wetland on the Qinghai-Tibet plateau
Cited by: 6
Author(s): Zhongfeng Li, Pingli Lu, Yong-Long Wang, Hui Yao, Pulak Maitra, Xiang Sun, Yong Zheng, Liang‐Dong Guo
Software Mentions: 1
Published: over 4 years ago
10.7717/peerj.4468
High variability of dung beetle diversity patterns at four mountains of the Trans-Mexican Volcanic Belt
Cited by: 24
Author(s): Alfonsina Arriaga-Jiménez, Matthias Rös, Gonzalo Halffter
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-021-82993-9
Pangenome analysis reveals genetic isolation in Campylobacter hyointestinalis subspecies adapted to different mammalian hosts
Cited by: 6
Author(s): Daniela Costa, Simon Lévesque, Nitin Kumar, Pablo Fresia, Ignacio Ferrés, Trevor D. Lawley, Gregorio Iraola
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-021-83112-4
Genetic structure of a remnant Acropora cervicornis population
Cited by: 3
Author(s): Steven W. J. Canty, Graeme Fox, Jennifer K. Rowntree, Richard F. Preziosi
Software Mentions: 1
Published: almost 4 years ago
10.7717/peerj.6220
Different ecological processes determined the alpha and beta components of taxonomic, functional, and phylogenetic diversity for plant communities in dryland regions of Northwest China
Cited by: 20
Author(s): Jianming Wang, Chen Chen, Jingwen Li, Feng Yin, Qi Lu
Software Mentions: 1
Published: almost 6 years ago
10.7717/peerj.5648
Variation of soil bacterial communities along a chronosequence of Eucalyptus plantation
Cited by: 4
Author(s): Jiayu Li, Lin Jia-yi, Chenyu Pei, Kaitao Lai, Thomas C. Jeffries, Guang-Da Tang
Software Mentions: 1
Published: about 6 years ago
10.7717/peerj.5141
Stream acidification and reduced aquatic prey availability are associated with dietary shifts in an obligate riparian Neotropical migratory songbird
Cited by: 13
Author(s): Brian K. Trevelline, Tim Nuttle, Brady A. Porter, Nathan L. Brouwer, Brandon D. Hoenig, Zachary D. Steffensmeier, Steven C. Latta
Software Mentions: 1
Published: over 6 years ago
10.7717/peerj.10201
Adaptive divergence, neutral panmixia, and algal symbiont population structure in the temperate coral <i>Astrangia poculata</i> along the Mid-Atlantic United States
Cited by: 5
Author(s): Hannah E. Aichelman, Daniel J. Barshis
Software Mentions: 1
Published: about 4 years ago
10.1186/s12936-019-2742-x
Species abundance, composition, and nocturnal activity of female Anopheles (Diptera: Culicidae) in malaria-endemic villages of Papua New Guinea: assessment with barrier screen sampling
Cited by: 11
Author(s): John B. Keven, Michelle Katusele, Rebecca Vinit, Gussy Koimbu, Naomi Vincent, Edward Thomsen, Stephan Karl, Lisa J. Reimer, Edward D. Walker
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-021-84790-w
Associations between dog keeping and indoor dust microbiota
Cited by: 9
Author(s): Jenni M. Mäki, Pirkka V. Kirjavainen, Martin Täubel, Eija Piippo‐Savolainen, Katri Backman, Anne Hyvärinen, Pauli Tuoresmäki, Balamuralikrishna Jayaprakash, Joachim Heinrich, Gunda Herberth, Marie Standl, Juha Pekkanen, Anne M. Karvonen
Software Mentions: 1
Published: over 3 years ago
10.3390/nu10070907
Betaine Improves Intestinal Functions by Enhancing Digestive Enzymes, Ameliorating Intestinal Morphology, and Enriching Intestinal Microbiota in High-salt stressed Rats
Cited by: 34
Author(s): Haichao Wang, Sisi Li, Shan Fang, Xiaojing Yang, Jie Feng
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-021-84673-0
The role of plants and soil properties in the enzyme activities of substrates on hard coal mine spoil heaps
Cited by: 32
Author(s): Agnieszka Kompała‐Bąba, Wojciech Bierza, Edyta Sierka, Agnieszka Błońska, Lynn Besenyei, Gabriela Woźniak
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-85066-z
A multifaceted approach to understanding bat community response to disturbance in a seasonally dry tropical forest
Cited by: 4
Author(s): Darwin Valle, Daniel M. Griffith, Andrea Jara‐Guerrero, Diego Armijos-Ojeda, Carlos I. Espinosa
Software Mentions: 1
Published: over 3 years ago
10.7717/peerj.9176
Aquatic insect community structure revealed by eDNA metabarcoding derives indices for environmental assessment
Cited by: 25
Author(s): Naotaka Uchida, Kengo Kubota, Shunsuke Aita, So Kazama
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-021-85805-2
Hydromorphological evaluation of the river training impact on a multi-thread river system (Belá River, Carpathians, Slovakia)
Cited by: 16
Author(s): Anna Kidová, Artur Radecki‐Pawlik, Miloš Rusnák, Karol Plesiński
Software Mentions: 1
Published: over 3 years ago
10.3390/nu7031798
Changes in Composition of Caecal Microbiota Associated with Increased Colon Inflammation in Interleukin-10 Gene-Deficient Mice Inoculated with Enterococcus Species
Cited by: 38
Author(s): Shalome A. Bassett, Wayne Young, Matthew P. G. Barnett, Adrian L. Cookson, Warren C. McNabb, Nicole C. Roy
Software Mentions: 1
Published: over 9 years ago
10.1038/s41598-021-85763-9
Measuring spatial co-occurrences of species potentially involved in Leishmania transmission cycles through a predictive and fieldwork approach
Cited by: 6
Author(s): Marla López, Diana Erazo, Juliana Hoyos, Cielo León, Patricia Fuya, Ligia Lugo, Juan Manuel Cordovez, Camila González
Software Mentions: 1
Published: over 3 years ago
10.7717/peerj.3986
Composition, diversity and function of intestinal microbiota in pacific white shrimp (<i>Litopenaeus vannamei</i>) at different culture stages
Cited by: 103
Author(s): Shenzheng Zeng, Zhijian Huang, Dongwei Hou, Jian Liu, Shaoping Weng, Jianguo He
Software Mentions: 1
Published: about 7 years ago
10.1038/s41598-021-86756-4
Partial shading by solar panels delays bloom, increases floral abundance during the late-season for pollinators in a dryland, agrivoltaic ecosystem
Cited by: 31
Author(s): Maggie Graham, Serkan Ateş, Andony Melathopoulos, Andrew R. Moldenke, Sandra J. DeBano, Lincoln Best, C. W. Higgins
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-87322-8
Lipids and organic acids in three gut locations affect feed efficiency of commercial pigs as revealed by LC–MS-based metabolomics
Cited by: 5
Author(s): Yong Ye, Jie Wu, Jianping Quan, Rongrong Ding, Ming Yang, Xingwang Wang, Shenping Zhou, Zhanwei Zhuang, Sixiu Huang, Tao Gu, Lingjun Hong, Enqin Zheng, Zhenfang Wu, Jie Yang
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-86278-z
Effects of sediment replenishment on riverbed environments and macroinvertebrate assemblages downstream of a dam
Cited by: 6
Author(s): Izumi Katano, Junjiro N. Negishi, Tomoko Minagawa, Hideyuki Doi, Yôichi Kawaguchi, Yuichi Kayaba
Software Mentions: 1
Published: over 3 years ago
10.3390/life11080852
Spatial and Species Variations of Bacterial Community Structure and Putative Function in Seagrass Rhizosphere Sediment
Cited by: 3
Author(s): Juan Ling, Wan Zhou, Qingsong Yang, Jingdong Yin, Jian Zhang, Qiuying Peng, Xiaofang Huang, Yuhang Zhang, Jinyun Dong
Software Mentions: 1
Published: over 3 years ago
10.7717/peerj.7631
Differential mechanisms underlying responses of soil bacterial and fungal communities to nitrogen and phosphorus inputs in a subtropical forest
Cited by: 14
Author(s): Yong Li, Dashuan Tian, Jinsong Wang, Shuli Niu, Jing Tian, Denglong Ha, Yuxi Qu, Guangwei Jing, Xiaoming Kang, Bing Song
Software Mentions: 1
Published: about 5 years ago
10.3390/life10070107
Assessing Viral Abundance and Community Composition in Four Contrasting Regions of the Southern Ocean
Cited by: 9
Author(s): Ana Sotomayor-García, M. Montserrat Sala, Isabel Ferrera, Marta Estrada, Evaristo Vázquez-Domı́nguez, Mikhail Emelianov, Pau Cortés, Cèlia Marrasé, Eva Ortega−Retuerta, Sdena Nunes, Yaiza Castillo, María Serrano Cuerva, Marta Sebastián, Manuel Dall’Osto, Rafel Simó, Dolors Vaqué
Software Mentions: 1
Published: over 4 years ago
10.7717/peerj.8984
Farming by soil in Europe: status and outlook of cropping systems under different pedoclimatic conditions
Cited by: 1
Author(s): Gergely Tóth, Tamás Kismányoky, Piroska Kassai, Tamás Hermann, Oihane Fernández‐Ugalde, Brigitta Szabó
Software Mentions: 1
Published: over 4 years ago
10.7717/peerj.9986
Soil fungal networks are more sensitive to grazing exclusion than bacterial networks
Cited by: 5
Author(s): Lingling Chen, Jiajia Shi, Zhihua Bao, Taogetao Baoyin
Software Mentions: 1
Published: about 4 years ago
10.7717/peerj.7356
Variation in denitrifying bacterial communities along a primary succession in the Hailuogou Glacier retreat area, China
Cited by: 7
Author(s): Yan Bai, Xiying Huang, Xiangrui Zhou, Quanju Xiang, Ke Zhao, Xiumei Yu, Qiang Chen, Hao Jiang, Nyima Tashi, Xue Gao, Yunfu Gu
Software Mentions: 1
Published: over 5 years ago
10.7717/peerj.4575
Oligotrophic wetland sediments susceptible to shifts in microbiomes and mercury cycling with dissolved organic matter addition
Cited by: 10
Author(s): Emily B. Graham, R. S. Gabor, Shon Schooler, Diane M. McKnight, Diana R. Nemergut, Joseph E. Knelman
Software Mentions: 1
Published: over 6 years ago
10.7717/peerj.9117
Characteristics of the soil microbial community in the forestland of <i>Camellia oleifera</i>
Cited by: 15
Author(s): Peng Zhang, Zhiyi Cui, Mengqing Guo, Ruchun Xi
Software Mentions: 1
Published: over 4 years ago
10.1128/mSystems.00458-19
Using DNA Metabarcoding To Evaluate the Plant Component of Human Diets: a Proof of Concept
Cited by: 19
Author(s): Aspen T. Reese, Tyler R. Kartzinel, Brianna L. Petrone, Peter J. Turnbaugh, Robert M. Pringle, Lawrence A. David
Software Mentions: 1
Published: about 5 years ago
10.1186/s12933-021-01333-3
Elevated plasma succinate levels are linked to higher cardiovascular disease risk factors in young adults
Cited by: 24
Author(s): Francisco J. Osuna‐Prieto, Borja Martínez-Téllez, Lourdes Ortiz-Alvarez, Xinyu Di, Lucas Jurado‐Fasoli, Huiwen Xu, Victòria Ceperuelo-Mallafré, Catalina Núñez‐Roa, Isabelle Köhler, Antonio Segura‐Carretero, José Vicente Garcı́a-Lario, Ángel Gil, Concepción M. Aguilera, J.M. Llamas Elvira, Patrick C.N. Rensen, Joan Vendrell, Jonatan R. Ruiz, Sonia Fernández‐Veledo
Software Mentions: 1
Published: over 3 years ago
10.7717/peerj.6738
Examining the assumptions of heterogeneity-based management for promoting plant diversity in a disturbance-prone ecosystem
Cited by: 0
Author(s): Daniel J. McGlinn, Michael W. Palmer
Software Mentions: 1
Published: over 5 years ago
10.1128/mSystems.00124-20
Shotgun Metagenomics of Gut Microbiota in Humans with up to Extreme Longevity and the Increasing Role of Xenobiotic Degradation
Cited by: 72
Author(s): Simone Rampelli, Matteo Soverini, Federica D’Amico, Monica Barone, Teresa Tavella, Daniela Monti, Miriam Capri, Annalisa Astolfi, Patrizia Brigidi, Elena Biagi, Claudio Franceschi, Silvia Turroni, Marco Candela
Software Mentions: 1
Published: over 4 years ago