cran: vegan | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2019.01951

Metagenomic Analysis of the Diversity of DNA Viruses in the Surface and Deep Sea of the South China Sea
Cited by: 32
Author(s): Yantao Liang, Long Wang, Zengmeng Wang, Jiulong Zhao, Qiaoqiao Yang, Min Wang, Kaiguang Yang, Lihua Zhang, Nianzhi Jiao, Yongyu Zhang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12906-021-03342-x

Ethanol extract of mulberry leaves partially restores the composition of intestinal microbiota and strengthens liver glycogen fragility in type 2 diabetic rats
Cited by: 14
Author(s): Zhanzhong Liu, Liu Qing-hua, Zhao Liu, Jia-Wei Tang, Eng Guan Chua, Fen Li, Xue-Song Xiong, Mengmeng Wang, Pengbo Wen, Xinyi Shi, Xiang-Yu Xi, Zhou Xiao, Liang Wang
Software Mentions: 1
Published: over 3 years ago

10.7717/peerj.3182

The importance of scale-dependent ravine characteristics on breeding-site selection by the Burrowing Parrot, Cyanoliseus patagonus
Cited by: 2
Author(s): Myriam Ramirez-Herranz, Rodrigo S. Ríos, Renzo Vargas-Rodríguez, Jose-Enrique Novoa-Jerez, Francisco A. Squeo
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-020-80379-x

Physiological responses of Siberian sturgeon (Acipenser baerii) juveniles fed on full-fat insect-based diet in an aquaponic system
Cited by: 23
Author(s): Matteo Zarantoniello, Basilio Randazzo, Valentina Nozzi, Cristina Truzzi, Elisabetta Giorgini, Gloriana Cardinaletti, Lorenzo Freddi, Stefano Ratti, Federico Girolametti, Andrea Osimani, Valentina Notarstefano, Vesna Milanović, Paola Riolo, Nunzio Isidoro, Francesca Tulli, Giorgia Gioacchini, Iacopo Olivotto
Software Mentions: 1
Published: almost 4 years ago

10.7717/peerj.10902

Soil properties and root traits jointly shape fine-scale spatial patterns of bacterial community and metabolic functions within a Korean pine forest
Cited by: 3
Author(s): Jun Teng, Jing Tian, Guirui Yu, Yakov Kuzyakov
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2021.630302

Impact of Intercropping on the Diazotrophic Community in the Soils of Continuous Cucumber Cropping Systems
Cited by: 5
Author(s): Huan Gao, Sen Li, Fengzhi Wu
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2019.03020

Different Effects of Premature Infant Formula and Breast Milk on Intestinal Microecological Development in Premature Infants
Cited by: 17
Author(s): Cheng Chen, Qiuyue Yin, Hui Wu, Long Cheng, Jung Il Kwon, Juan Jin, Tao Han, Huilian Che
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmicb.2012.00376

The effect of marination on lactic acid bacteria communities in raw broiler fillet strips
Cited by: 17
Author(s): Tea Nieminen, Hanna Välitalo, Elina Säde, Anne Paloranta, Kaisa Koskinen, Johanna Björkroth
Software Mentions: 1
Published: almost 13 years ago

10.3389/fmicb.2019.00253

Anaerobic Degradation of Sulfated Polysaccharides by Two Novel Kiritimatiellales Strains Isolated From Black Sea Sediment
Cited by: 36
Author(s): Daan M. van Vliet, Susakul Palakawong Na Ayudthaya, Sally Diop, Laura Villanueva, Alfons Johannes Maria Stams, Irene Sánchez‐Andrea
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-021-81158-y

Metabolomics-based analysis of miniature flask contents identifies tobacco mixture use among the ancient Maya
Cited by: 13
Author(s): Mario Zimmermann, Korey J. Brownstein, Luis Pantoja Dïaz, Iliana Ancona Aragón, Scott R. Hutson, Barry Kidder, Shannon Tushingham, David R. Gang
Software Mentions: 1
Published: almost 4 years ago

10.3389/fmicb.2017.00764

Microbial Community Response to Simulated Petroleum Seepage in Caspian Sea Sediments
Cited by: 18
Author(s): Marion Stagars, Sonakshi Mishra, Tina Treude, Rudolf Amann, Katrin Knittel
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2018.03122

Niche Separation of Ammonia Oxidizers in Mudflat and Agricultural Soils Along the Yangtze River, China
Cited by: 3
Author(s): Xue Zhou, Bolun Li, Zhiying Guo, Zhiyuan Wang, Jian Luo, Chunhui Lu
Software Mentions: 1
Published: almost 6 years ago

10.7717/peerj.5252

Best in the company of nearby males: female success in the threatened cycad,Zamia portoricensis
Cited by: 6
Author(s): Julio C. Lazcano-Lara, James D. Ackerman
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.8695

Diversity of root-associated culturable fungi of Cephalanthera rubra (Orchidaceae) in relation to soil characteristics
Cited by: 11
Author(s): J. A. Bell, Kazutomo Yokoya, Jonathan P. Kendon, Viswambharan Sarasan
Software Mentions: 1
Published: over 4 years ago

10.7717/peerj.8905

Diversity of rhizosphere and endophytic fungi in Atractylodes macrocephala during continuous cropping
Cited by: 21
Author(s): Bo Zhu, Jianjun Wu, Qingyong Ji, Wu Wei, Shihui Dong, Jia-Yan Yu, Qiaoyan Zhang, Lu‐Ping Qin
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2015.00022

Evident bacterial community changes but only slight degradation when polluted with pyrene in a red soil
Cited by: 75
Author(s): Guohao Ren, Wenjie Ren, Ying Teng, Zhengao Li
Software Mentions: 1
Published: almost 10 years ago

10.7717/peerj.7906

Artificial substrata increase pond farming density of grass carp (Ctenopharyngodon idella) by increasing the bacteria that participate in nitrogen and phosphorus cycles in pond water
Cited by: 5
Author(s): Zhifei Li, Guangjun Wang, Ermeng Yu, Kai Zhang, Deguang Yu, Wangbao Gong, Jun Xie
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2020.00829

Effects of Different Vegetable Rotations on Fungal Community Structure in Continuous Tomato Cropping Matrix in Greenhouse
Cited by: 26
Author(s): Jian Lyu, Li Jin, Ning Jin, Jianming Xie, Xuemei Xiao, Linli Hu, Zhongqi Tang, Yue Wu, Lijuan Niu, Jiangnan Yu
Software Mentions: 1
Published: over 4 years ago

10.7717/peerj.1014

Influence of sediment characteristics on the composition of soft-sediment intertidal communities in the northern Gulf of Mexico
Cited by: 8
Author(s): Kyle E. Coblentz, Jessica R. Henkel, Bryan J. Sigel, Caz M. Taylor
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2021.611951

Using Structural Equation Modeling to Understand Interactions Between Bacterial and Archaeal Populations and Volatile Fatty Acid Proportions in the Rumen
Cited by: 8
Author(s): Veronica Kaplan-Shabtai, Nagaraju Indugu, Meagan L. Hennessy, Bonnie Vecchiarelli, Joseph S. Bender, Darko Stefanovski, Camila Flávia de Assis Lage, S.E. Räisänen, A. Melgar, K. Nedelkov, M. E. Fetter, A. Corujo Fernández, Addison Spitzer, A.N. Hristov, Dipti Pitta
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2016.01535

Environmental Drivers of Differences in Microbial Community Structure in Crude Oil Reservoirs across a Methanogenic Gradient
Cited by: 30
Author(s): Jennifer L. Shelton, Denise M. Akob, Jennifer C. McIntosh, Noah Fierer, John R. Spear, Peter D. Warwick, John E. McCray
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2015.01149

Responses of soil microeukaryotic communities to short-term fumigation-incubation revealed by MiSeq amplicon sequencing
Cited by: 19
Author(s): Chunye Lin, Jianming Xu, Youzhi Feng, Juntao Wang, Yongjie Yu, Philip C. Brookes
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-021-82060-3

Effects of integrated biocontrol on bacterial wilt and rhizosphere bacterial community of tobacco
Cited by: 18
Author(s): Yun Hu, Yanyan Li, Xiaomin Yang, Chunli Li, Lin Wang, Jia‐Xun Feng, Shouwen Chen, Xihong Li, Yong Yang
Software Mentions: 1
Published: almost 4 years ago

10.3389/fmicb.2016.01032

Effects of Short-Term Warming and Altered Precipitation on Soil Microbial Communities in Alpine Grassland of the Tibetan Plateau
Cited by: 33
Author(s): Kaoping Zhang, Yu Shi, Xin Jing, Jin‐Sheng He, Run‐Cang Sun, Yunfeng Yang, Ashley Shade, Haiyan Chu
Software Mentions: 1
Published: over 8 years ago

10.7717/peerj.10866

Characteristics of planktonic and sediment bacterial communities in a heavily polluted urban river
Cited by: 3
Author(s): Heqing Huang, Jianhui Liu, Fanghui Zhang, Kangwen Zhu, Chunhua Yang, Qiujie Xiang, Bo Liu
Software Mentions: 1
Published: over 3 years ago

10.7717/peerj.7553

Marked variations in gut microbiota and some innate immune responses of fresh water crayfish, marron (Cherax cainii, Austin 2002) fed dietary supplementation of Clostridium butyricum
Cited by: 13
Author(s): Javed Foysal, Thi Thu Thuy Nguyen, Reaz Chaklader, Muhammad A.B. Siddik, Chin Yen Tay, Ravi Fotedar, Sanjay Kumar Gupta
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2017.01550

Heat Stress Dictates Microbial Lipid Composition along a Thermal Gradient in Marine Sediments
Cited by: 38
Author(s): Miriam Sollich, Marcos Yukio Yoshinaga, Stefan Häusler, Roy E. Price, Kai‐Uwe Hinrichs, Solveig I Bühring
Software Mentions: 1
Published: over 7 years ago

10.7717/peerj.1556

Historical and current introgression in a Mesoamerican hummingbird species complex: a biogeographic perspective
Cited by: 22
Author(s): Rosa Alicia Jiménez, Juan Francisco Ornelas
Software Mentions: 1
Published: almost 10 years ago

10.3389/fmicb.2013.00207

Microbial habitat connectivity across spatial scales and hydrothermal temperature gradients at Guaymas Basin
Cited by: 20
Author(s): Stefanie Meyer, Gunter Wegener, Karen G. Lloyd, Andreas Teske, Antje Boetius, Alban Ramette
Software Mentions: 1
Published: almost 12 years ago

10.3389/fmicb.2018.01230

Time Series Analysis of the Microbiota of Children Suffering From Acute Infectious Diarrhea and Their Recovery After Treatment
Cited by: 28
Author(s): Ener Çağrı Dinleyici, Daniel Martínez-Martínez, Ateş Kara, Adem Karbuz, Nazan Dalgıç, Özge Metin, Ahmet Sami Yazar, Şirin Güven, Zafer Kurugöl, Özden Türel, Mehmet Küçükkoç, Olcay Yasa, Makbule Eren, Metehan Özen, Jose Manuel Martí, Carlos P. Garay, Yvan Vandenplas, Andrés Moya
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2019.00995

Oil Hydrocarbon Degradation by Caspian Sea Microbial Communities
Cited by: 26
Author(s): John I. Miller, Stephen M. Techtmann, Julian L. Fortney, Nagissa Mahmoudi, Dominique C. Joyner, Jiang Liu, Scott W. Olesen, Eric J. Alm, Adolfo Maza, Piero R. Gardinali, Nargiz GaraJayeva, Faig S. Askerov, Terry C. Hazen
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.1152

Sixty years of change in avian communities of the Pacific Northwest
Cited by: 6
Author(s): Jenna R. Curtis, W. Douglas Robinson
Software Mentions: 1
Published: over 9 years ago

10.7717/peerj.4226

Boundaries in ground beetle (Coleoptera: Carabidae) and environmental variables at the edges of forest patches with residential developments
Cited by: 4
Author(s): Doreen E. Davis, Sara A. Gagné
Software Mentions: 1
Published: almost 7 years ago

10.7717/peerj.4231

Ant mosaics in Bornean primary rain forest high canopy depend on spatial scale, time of day, and sampling method
Cited by: 16
Author(s): Kalsum M. Yusah, William A. Foster, Glen Reynolds, Tom M. Fayle
Software Mentions: 1
Published: almost 7 years ago

10.7717/peerj.3677

Comparison of chemical compounds associated with sclerites from healthy and diseased sea fan corals (Gorgonia ventalina)
Cited by: 3
Author(s): Carlos Toledo-Hernández, Claudia Patricia Ruiz-Diaz, Liz M. Díaz-Vázquez, Vanessa Santiago-Cárdenas, Derick N Rosario-Berrios, Derek M. García-Almedina, Loretta Roberson
Software Mentions: 1
Published: about 7 years ago

10.7717/peerj.9375

Response of arbuscular mycorrhizal fungal community in soil and roots to grazing differs in a wetland on the Qinghai-Tibet plateau
Cited by: 6
Author(s): Zhongfeng Li, Pingli Lu, Yong-Long Wang, Hui Yao, Pulak Maitra, Xiang Sun, Yong Zheng, Liang‐Dong Guo
Software Mentions: 1
Published: over 4 years ago

10.7717/peerj.4468

High variability of dung beetle diversity patterns at four mountains of the Trans-Mexican Volcanic Belt
Cited by: 24
Author(s): Alfonsina Arriaga-Jiménez, Matthias Rös, Gonzalo Halffter
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2015.00136

Elevated atmospheric CO2 levels affect community structure of rice root-associated bacteria
Cited by: 37
Author(s): Takashi Okubo, Dongyan Liu, Hirohito Tsurumaru, Seishi Ikeda, Susumu Asakawa, Takeshi Tokida, Kanako Tago, Masahito Hayatsu, Naohiro Aoki, Ken Ishimaru, Kazuhiro Ujiie, Yasuhiro Usui, Hirofumi Nakamura, Hidemitsu Sakai, Kentaro Hayashi, Toshihiro Hasegawa, Kiwamu Minamisawa
Software Mentions: 1
Published: almost 10 years ago

10.3389/fmicb.2019.02953

High Diversity and Functional Complementation of Alimentary Canal Microbiota Ensure Small Brown Planthopper to Adapt Different Biogeographic Environments
Cited by: 14
Author(s): Wenwen Liu, Xiaowan Zhang, Nan Wu, Yingdang Ren, Xifeng Wang
Software Mentions: 1
Published: almost 5 years ago

10.7717/peerj.6220

Different ecological processes determined the alpha and beta components of taxonomic, functional, and phylogenetic diversity for plant communities in dryland regions of Northwest China
Cited by: 20
Author(s): Jianming Wang, Chen Chen, Jingwen Li, Feng Yin, Qi Lu
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2016.01106

Biogeographic Distribution Patterns of Bacteria in Typical Chinese Forest Soils
Cited by: 70
Author(s): Zongwei Xia, Edith Bai, Qingkui Wang, Decai Gao, Jiang Zhou, Ping Jiang, Jiabing Wu
Software Mentions: 1
Published: over 8 years ago

10.7717/peerj.5648

Variation of soil bacterial communities along a chronosequence of Eucalyptus plantation
Cited by: 4
Author(s): Jiayu Li, Lin Jia-yi, Chenyu Pei, Kaitao Lai, Thomas C. Jeffries, Guang-Da Tang
Software Mentions: 1
Published: about 6 years ago

10.1155/2016/8232135

The Vertical Distribution of Sediment Archaeal Community in the “Black Bloom” Disturbing Zhushan Bay of Lake Taihu
Cited by: 29
Author(s): Xianfang Fan, Peng Xing
Software Mentions: 1
Published: almost 9 years ago

10.7717/peerj.5141

Stream acidification and reduced aquatic prey availability are associated with dietary shifts in an obligate riparian Neotropical migratory songbird
Cited by: 13
Author(s): Brian K. Trevelline, Tim Nuttle, Brady A. Porter, Nathan L. Brouwer, Brandon D. Hoenig, Zachary D. Steffensmeier, Steven C. Latta
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.10201

Adaptive divergence, neutral panmixia, and algal symbiont population structure in the temperate coral Astrangia poculata along the Mid-Atlantic United States
Cited by: 5
Author(s): Hannah E. Aichelman, Daniel J. Barshis
Software Mentions: 1
Published: about 4 years ago

10.3389/fmicb.2015.01114

Effects of sludge inoculum and organic feedstock on active microbial communities and methane yield during anaerobic digestion
Cited by: 34
Author(s): David E. Wilkins, Subramanya Rao, Xiaoying Lü, Patrick K. H. Lee
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2017.00945

Microbial Community and Functional Structure Significantly Varied among Distinct Types of Paddy Soils But Responded Differently along Gradients of Soil Depth Layers
Cited by: 61
Author(s): Ren Yuan Bai, Jun‐Tao Wang, Ye Deng, Ji‐Zheng He, Kai Feng, Limei Zhang
Software Mentions: 1
Published: over 7 years ago

10.7717/peerj.9176

Aquatic insect community structure revealed by eDNA metabarcoding derives indices for environmental assessment
Cited by: 25
Author(s): Naotaka Uchida, Kengo Kubota, Shunsuke Aita, So Kazama
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2016.01893

Long-Term Application of Bioorganic Fertilizers Improved Soil Biochemical Properties and Microbial Communities of an Apple Orchard Soil
Cited by: 54
Author(s): Lei Wang, Fang Yang, E Yaoyao, Jun Yuan, Waseem Raza, Qiwei Huang, Qirong Shen
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2020.00628

Early and Short-Term Interventions in the Gut Microbiota Affects Lupus Severity, Progression, and Treatment in MRL/lpr Mice
Cited by: 20
Author(s): Yun Zhang, Qiuping Liu, Yiran Yu, Mingzhu Wang, Chengping Wen, Zhixing He
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2016.01662

Bacterial Communities Associated with Four Cyanobacterial Genera Display Structural and Functional Differences: Evidence from an Experimental Approach
Cited by: 24
Author(s): Lin Zhu, Anouk Zancarini, Imen Louati, Silvia de Cesare, Clément Duval, Kevin Tambosco, Cécile Bernard, Didier Debroas, Lirong Song, Julie Leloup, Jean‐François Humbert
Software Mentions: 1
Published: about 8 years ago

10.7717/peerj.3986

Composition, diversity and function of intestinal microbiota in pacific white shrimp (Litopenaeus vannamei) at different culture stages
Cited by: 103
Author(s): Shenzheng Zeng, Zhijian Huang, Dongwei Hou, Jian Liu, Shaoping Weng, Jianguo He
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2018.02565

The Effect of Captivity on the Dynamics of Active Bacterial Communities Differs Between Two Deep-Sea Coral Species
Cited by: 18
Author(s): Pierre E. Galand, Leïla Chapron, Anne-Leïla Meistertzheim, Erwan Péru, Franck Lartaud
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2019.00063

Assessment of the Diversity of Fungal Community Composition Associated With Vachellia pachyceras and Its Rhizosphere Soil From Kuwait Desert
Cited by: 21
Author(s): M. K. Suleiman, Kingsley W. Dixon, Lucy Commander, Paul Nevill, Ali M. Quoreshi, N. R. Bhat, Anitha J. Manuvel, Mini T. Sivadasan
Software Mentions: 1
Published: almost 6 years ago

10.7717/peerj.7631

Differential mechanisms underlying responses of soil bacterial and fungal communities to nitrogen and phosphorus inputs in a subtropical forest
Cited by: 14
Author(s): Yong Li, Dashuan Tian, Jinsong Wang, Shuli Niu, Jing Tian, Denglong Ha, Yuxi Qu, Guangwei Jing, Xiaoming Kang, Bing Song
Software Mentions: 1
Published: about 5 years ago

10.7717/peerj.8984

Farming by soil in Europe: status and outlook of cropping systems under different pedoclimatic conditions
Cited by: 1
Author(s): Gergely Tóth, Tamás Kismányoky, Piroska Kassai, Tamás Hermann, Oihane Fernández‐Ugalde, Brigitta Szabó
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-021-82993-9

Pangenome analysis reveals genetic isolation in Campylobacter hyointestinalis subspecies adapted to different mammalian hosts
Cited by: 6
Author(s): Daniela Costa, Simon Lévesque, Nitin Kumar, Pablo Fresia, Ignacio Ferrés, Trevor D. Lawley, Gregorio Iraola
Software Mentions: 1
Published: almost 4 years ago

10.7717/peerj.9986

Soil fungal networks are more sensitive to grazing exclusion than bacterial networks
Cited by: 5
Author(s): Lingling Chen, Jiajia Shi, Zhihua Bao, Taogetao Baoyin
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-021-83112-4

Genetic structure of a remnant Acropora cervicornis population
Cited by: 3
Author(s): Steven W. J. Canty, Graeme Fox, Jennifer K. Rowntree, Richard F. Preziosi
Software Mentions: 1
Published: almost 4 years ago

10.7717/peerj.7356

Variation in denitrifying bacterial communities along a primary succession in the Hailuogou Glacier retreat area, China
Cited by: 7
Author(s): Yan Bai, Xiying Huang, Xiangrui Zhou, Quanju Xiang, Ke Zhao, Xiumei Yu, Qiang Chen, Hao Jiang, Nyima Tashi, Xue Gao, Yunfu Gu
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.4575

Oligotrophic wetland sediments susceptible to shifts in microbiomes and mercury cycling with dissolved organic matter addition
Cited by: 10
Author(s): Emily B. Graham, R. S. Gabor, Shon Schooler, Diane M. McKnight, Diana R. Nemergut, Joseph E. Knelman
Software Mentions: 1
Published: over 6 years ago

10.1155/2020/8888615

Response and Adaptation of Microbial Community in a CANON Reactor Exposed to an Extreme Alkaline Shock
Cited by: 8
Author(s): Ruili Yang, Wenlong Mao, Xiaojun Wang, Zhaoji Zhang, Jianrong Wu, Shaohua Chen
Software Mentions: 1
Published: over 4 years ago

10.1155/2016/3401272

Comparative Analysis of Methanogenic Communities in Different Laboratory-Scale Anaerobic Digesters
Cited by: 45
Author(s): Ayrat M. Ziganshin, Elvira E. Ziganshina, Sabine Kleinsteuber, Marcell Nikolausz
Software Mentions: 1
Published: almost 9 years ago

10.7717/peerj.9117

Characteristics of the soil microbial community in the forestland of Camellia oleifera
Cited by: 15
Author(s): Peng Zhang, Zhiyi Cui, Mengqing Guo, Ruchun Xi
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2018.00634

Urea Amendment Decreases Microbial Diversity and Selects for Specific Nitrifying Strains in Eight Contrasting Agricultural Soils
Cited by: 33
Author(s): Christopher Staley, Florence Breuillin‐Sessoms, Ping Wang, Thomas Kaiser, Rodney T. Venterea, Michael J. Sadowsky
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.6738

Examining the assumptions of heterogeneity-based management for promoting plant diversity in a disturbance-prone ecosystem
Cited by: 0
Author(s): Daniel J. McGlinn, Michael W. Palmer
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.565806

Bacterial Community Characteristics and Enzyme Activities in Bothriochloa ischaemum Litter Over Progressive Phytoremediation Years in a Copper Tailings Dam
Cited by: 10
Author(s): Tong Jia, Yuwen Wang, Bo Chai
Software Mentions: 1
Published: almost 4 years ago

10.3389/fmicb.2017.00702

Relative Importance of Chemoautotrophy for Primary Production in a Light Exposed Marine Shallow Hydrothermal System
Cited by: 20
Author(s): Gonzalo V. Gomez‐Saez, Petra Pop Ristova, Stefan M. Sievert, Marcus Elvert, Kai‐Uwe Hinrichs, Solveig I Bühring
Software Mentions: 1
Published: over 7 years ago

10.7717/peerj.5166

Minimizing confounders and increasing data quality in murine models for studies of the gut microbiome
Cited by: 43
Author(s): Jun Miyoshi, Vanessa Leone, Kentaro Nobutani, Mark W. Musch, Kristina Martinez, Yunwei Wang, Sawako Miyoshi, Alexandria M. Bobe, A. Murat Eren, Eugene B. Chang
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.6967

High resistance to climatic variability in a dominant tundra shrub species
Cited by: 5
Author(s): Victoria T. González, Mikel Moriana-Armendariz, Snorre B. Hagen, Bente Lindgård, Rigmor Reiersen, Kari Anne Bråthen
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2018.00797

Bacterial Diversity and Nitrogen Utilization Strategies in the Upper Layer of the Northwestern Pacific Ocean
Cited by: 33
Author(s): Yuanyuan Li, Xiao-Huang Chen, Zhang-Xian Xie, Dongxu Li, Pengfei Wu, Ling-Fen Kong, Lin Lin, Shuh‐Ji Kao, Dazhi Wang
Software Mentions: 1
Published: over 6 years ago

10.1186/s13568-017-0471-5

Comparison of the bacterial community composition in the granular and the suspended phase of sequencing batch reactors
Cited by: 35
Author(s): Enikö Barbara Szabo, Raquel Liébana, Malte Hermansson, Oskar Modin, Frank Persson, Britt‐Marie Wilén
Software Mentions: 1
Published: about 7 years ago

10.3390/microorganisms7120641

The Simplified Human Intestinal Microbiota (SIHUMIx) Shows High Structural and Functional Resistance against Changing Transit Times in In Vitro Bioreactors
Cited by: 28
Author(s): Stephanie Serena Schäpe, Jannike Lea Krause, Beatrice Engelmann, Katarina Fritz-Wallace, Florian Schattenberg, Zishu Liu, Susann Müller, Nico Jehmlich, Ulrike Rolle-Kampczyk, Gunda Herberth, Martin von Bergen
Software Mentions: 1
Published: almost 5 years ago

10.1186/s42523-021-00093-5

Gut microbiota of frugo-folivorous sifakas across environments
Cited by: 11
Author(s): Lydia K. Greene, Marina B. Blanco, Elodi Rambeloson, Karlis Graubics, Brian Fanelli, Rita R. Colwell, Christine M. Drea
Software Mentions: 1
Published: over 3 years ago

10.3390/microorganisms8091352

Molecular Characterization of the Myoliquefactive Fish Parasite Kudoa mirabilis (Cnidaria, Kudoidae) from SW Indian Ocean and Its Phylogenetic Relationship with the Kudoa thyrsites Species Complex
Cited by: 9
Author(s): Lucilla Giulietti, Egil Karlsbakk, Paolo Cipriani, Salome Daniel Shayo, Julia E. Storesund, Arne Levsen
Software Mentions: 1
Published: about 4 years ago

10.3390/microorganisms7090320

Predictors of Obesity among Gut Microbiota Biomarkers in African American Men with and without Diabetes
Cited by: 25
Author(s): Elena Barengolts, Stefan J. Green, George E. Chlipala, Brian T. Layden, Yuval Eisenberg, Medha Priyadarshini, Lara R. Dugas
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2018.00185

Soil Bacterial Community Was Changed after Brassicaceous Seed Meal Application for Suppression of Fusarium Wilt on Pepper
Cited by: 17
Author(s): Guohao Ren, Yan Ma, Dali Guo, Terry J. Gentry, Ping Hu, Elizabeth A. Pierson, Mengmeng Gu
Software Mentions: 1
Published: almost 7 years ago

10.3390/microorganisms8020198

Planktonic Bacterial and Archaeal Communities in an Artificially Irrigated Estuarine Wetland: Diversity, Distribution, and Responses to Environmental Parameters
Cited by: 4
Author(s): Mingyue Li, Tiezhu Mi, Zhigang Yu, Manman Ma, Yu Zhen
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmicb.2017.00976

The Biogeographic Pattern of Microbial Functional Genes along an Altitudinal Gradient of the Tibetan Pasture
Cited by: 22
Author(s): Qi Qi, Mengxin Zhao, Shiping Wang, Xingyu Ma, Yuxuan Wang, Ying Gao, Qiaoyan Lin, Xiangzhen Li, Baohua Gu, Guoxue Li, Jizhong Zhou, Yunfeng Yang
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2018.00171

Ammonia-Oxidizing Archaea Show More Distinct Biogeographic Distribution Patterns than Ammonia-Oxidizing Bacteria across the Black Soil Zone of Northeast China
Cited by: 31
Author(s): Junjie Liu, Zhenhua Yu, Qin Yao, Yueyu Sui, Yu Shi, Haiyan Chu, Caixian Tang, Ashley E. Franks, Jian Jin, Xiaobing Liu
Software Mentions: 1
Published: almost 7 years ago

10.3390/microorganisms8060836

Soil Bacterial Diversity and Potential Functions Are Regulated by Long-Term Conservation Tillage and Straw Mulching
Cited by: 24
Author(s): Chang Liu, Lingling Li, Jinsheng Xie, Jeffrey A. Coulter, Renzhi Zhang, Zhen Luo, Liqun Cai, Lin Lin Wang, Subramaniam Gopalakrishnan
Software Mentions: 1
Published: over 4 years ago

10.3390/microorganisms6040105

Dynamics of a Perturbed Microbial Community during Thermophilic Anaerobic Digestion of Chemically Defined Soluble Organic Compounds
Cited by: 11
Author(s): Luka Šafarič, Sepehr Shakeri Yekta, Tong Liu, Bo Svensson, Anna Schnürer, David Bastviken, Annika Björn
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2019.00248

Seasonality of Planktonic Freshwater Ciliates: Are Analyses Based on V9 Regions of the 18S rRNA Gene Correlated With Morphospecies Counts?
Cited by: 42
Author(s): Gianna Pitsch, Estelle P. Bruni, Dominik Forster, Zhishuai Qu, Bettina Sonntag, Thorsten Stoeck, Thomas Posch
Software Mentions: 1
Published: almost 6 years ago

10.3390/microorganisms7110525

Distinct Microbial Community of Phyllosphere Associated with Five Tropical Plants on Yongxing Island, South China Sea
Cited by: 11
Author(s): Lijun Bao, Wenyang Cai, Xiaofen Zhang, Jinhong Liu, Hao Chen, Yuansong Wei, Xiuxiu Jia, Zhihui Bai
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2016.01840

Impacts of Fertilization Regimes on Arbuscular Mycorrhizal Fungal (AMF) Community Composition Were Correlated with Organic Matter Composition in Maize Rhizosphere Soil
Cited by: 55
Author(s): Chen Zhu, Ning Ling, Junjie Guo, Min Wang, Shiwei Guo
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2020.01333

Ridge Tillage Improves Soil Properties, Sustains Diazotrophic Communities, and Enhances Extensively Cooperative Interactions Among Diazotrophs in a Clay Loam Soil
Cited by: 8
Author(s): Xiaojing Hu, Aizhen Liang, Qin Yao, Zhuxiu Liu, Zhenhua Yu, Guanghua Wang
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-021-84790-w

Associations between dog keeping and indoor dust microbiota
Cited by: 9
Author(s): Jenni M. Mäki, Pirkka V. Kirjavainen, Martin Täubel, Eija Piippo‐Savolainen, Katri Backman, Anne Hyvärinen, Pauli Tuoresmäki, Balamuralikrishna Jayaprakash, Joachim Heinrich, Gunda Herberth, Marie Standl, Juha Pekkanen, Anne M. Karvonen
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2020.00314

Microbial Community, Newly Sequestered Soil Organic Carbon, and δ15N Variations Driven by Tree Roots
Cited by: 17
Author(s): Wenchen Song, Xiaochong Tong, Yanhong Liu, LI Wei-ke
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2020.603046

Among-Strain Variation in Resistance of Paramecium caudatum to the Endonuclear Parasite Holospora undulata: Geographic and Lineage-Specific Patterns
Cited by: 8
Author(s): Jared Weiler, Giacomo Zilio, Nathalie Zeballos, Louise Solveig Nørgaard, Winiffer D. Conce Alberto, Sascha Krenek, Oliver Kaltz, Lydia J. Bright
Software Mentions: 1
Published: almost 4 years ago

10.3390/microorganisms9040714

Diversity of Microorganisms in Biocrusts Surrounding Highly Saline Potash Tailing Piles in Germany
Cited by: 6
Author(s): Ekaterina Pushkareva, Veronika Sommer, Israel Barrantes, Ulf Karsten
Software Mentions: 1
Published: over 3 years ago

10.1007/s00253-014-5868-3

Investigating bacterial populations in styrene-degrading biofilters by 16S rDNA tag pyrosequencing
Cited by: 23
Author(s): Kevin J. Portune, M. Pérez, Francisco Javier Álvarez‐Hornos, Carmen Gabaldón
Software Mentions: 1
Published: over 10 years ago

10.3390/microorganisms8060834

Intercropping with Potato-Onion Enhanced the Soil Microbial Diversity of Tomato
Cited by: 27
Author(s): Naihui Li, Danmei Gao, Xingang Zhou, Shaocan Chen, Chunxia Li, Fengzhi Wu
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2020.01891

Transient Dynamics of Archaea and Bacteria in Sediments and Brine Across a Salinity Gradient in a Solar Saltern of Goa, India
Cited by: 15
Author(s): Kabilan Mani, Najwa Taïb, Mylène Hugoni, Gisèle Bronner, Judith M. Bragança, Didier Debroas
Software Mentions: 1
Published: over 4 years ago

10.3390/microorganisms9051071

In Vitro Fermentation Characteristics and Fiber-Degrading Enzyme Kinetics of Cellulose, Arabinoxylan, β-Glucan and Glucomannan by Pig Fecal Microbiota
Cited by: 19
Author(s): Yu Bai, Xingjian Zhou, Na Li, Jinbiao Zhao, Yue Hao, Shuai Zhang, Hsi-Chi Yang, Yu Pi, Shiyu Tao, Dandan Han, Shuai Zhang, Junjun Wang
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2020.01213

Amoxicillin Increased Functional Pathway Genes and Beta-Lactam Resistance Genes by Pathogens Bloomed in Intestinal Microbiota Using a Simulator of the Human Intestinal Microbial Ecosystem
Cited by: 12
Author(s): Lei Liu, Qing Wang, Hongtao Lin, Ranjit Das, Siyi Wang, Hongmei Qi, Jing Yang, Yingang Xue, Daqing Mao, Yi Luo
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2021.699190

Interspecific Niche Competition Increases Morphological Diversity in Multi-Species Microbial Communities
Cited by: 5
Author(s): Xiao‐Lin Chu, Quanguo Zhang, Angus Buckling, Meaghan Castledine
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2019.00023

Biogeographic Distribution Patterns of the Archaeal Communities Across the Black Soil Zone of Northeast China
Cited by: 19
Author(s): Junjie Liu, Zhenhua Yu, Qin Yao, Yueyu Sui, Yu Shi, Haiyan Chu, Caixian Tang, Ashley E. Franks, Jian Jin, Xiaobing Liu, Guanghua Wang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2016.01207

Wheat and Rice Growth Stages and Fertilization Regimes Alter Soil Bacterial Community Structure, But Not Diversity
Cited by: 68
Author(s): Jichen Wang, Cong Xue, Yang Song, Lei Wang, Qiwei Huang, Qirong Shen
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2015.00961

pH-driven shifts in overall and transcriptionally active denitrifiers control gaseous product stoichiometry in growth experiments with extracted bacteria from soil
Cited by: 59
Author(s): Kristof Brenzinger, Peter Dörsch, Gesche Braker
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2014.00273

Cytometric fingerprints: evaluation of new tools for analyzing microbial community dynamics
Cited by: 60
Author(s): Christin Koch, Falk Harnisch, Uwe Schröder, Susann Müller
Software Mentions: 1
Published: over 10 years ago

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