cran: vegan | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0036290

Individual to Community-Level Faunal Responses to Environmental Change from a Marine Fossil Record of Early Miocene Global Warming
Cited by: 4
Author(s): Christina L. Belanger
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0184517

Improving the antiprotozoal effect of saponins in the rumen by combination with glycosidase inhibiting iminosugars or by modification of their chemical structure
Cited by: 13
Author(s): E. Ramos-Morales, Gabriel de la Fuente, Robert J. Nash, Radek Bragança, S. Duval, Marc E. Bouillon, Martina Lahmann, C. J. Newbold
Software Mentions: 1
Published: about 7 years ago

10.1186/s12866-020-01937-x

Impact of long-term industrial contamination on the bacterial communities in urban river sediments
Cited by: 18
Author(s): Lei Zhang, Demei Tu, Xingchen Li, Wenxuan Lu, Jing Li
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0211718

Genetic dissection of agronomic and quality traits based on association mapping and genomic selection approaches in durum wheat grown in Southern Spain
Cited by: 25
Author(s): Rosa Mérida-García, Guozheng Liu, Sang He, Victoria González-Dugo, Gabriel Dorado, Sergio Gálvez, Ignacio Solís, Pablo J. Zarco‐Tejada, Jochen C. Reif, Pilar Hernández
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0198087

Effects of straw return on bacterial communities in a wheat-maize rotation system in the North China Plain
Cited by: 22
Author(s): Dali Yu, Zhiguo Wen, Xiumei Li, Xiaojun Song, Huijun Wu, Peilong Yang
Software Mentions: 1
Published: over 6 years ago

10.1038/srep03829

Rapid recovery of soil bacterial communities after wildfire in a Chinese boreal forest
Cited by: 112
Author(s): Xingjia Xiang, Yu Shi, Jian Yang, Jianjian Kong, Xiangui Lin, Huayong Zhang, Jun Zeng, Haiyan Chu
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12866-018-1246-0

The variation profile of intestinal microbiota in blunt snout bream (Megalobrama amblycephala) during feeding habit transition
Cited by: 20
Author(s): Wei Jin, Xianwu Guo, Han Liu, Yuanyuan Chen, Weimin Wang
Software Mentions: 1
Published: about 6 years ago

10.1186/s12866-020-01994-2

Uncovering fungal community composition in natural habitat of Ophiocordyceps sinensis using high-throughput sequencing and culture-dependent approaches
Cited by: 7
Author(s): Chuan-Bo Zhang, Chao-Hui Ren, Yanli Wang, Qi‐Qi Wang, Yunsheng Wang, Qingbei Weng
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0056329

Bacterial Communities Associated with the Leaves and the Roots of Arabidopsis thaliana
Cited by: 588
Author(s): Natacha Bodenhausen, Matthew Horton, Joy Bergelson
Software Mentions: 1
Published: almost 12 years ago

10.1038/srep09456

A pyrosequencing insight into sprawling bacterial diversity and community dynamics in decaying deadwood logs of Fagus sylvatica and Picea abies
Cited by: 86
Author(s): Björn Hoppe, Krüger Krger, Tiemo Kahl, Tobias Arnstadt, François Buscot, Jürgen Bauhus, Tesfaye Wubet
Software Mentions: 1
Published: over 9 years ago

10.1186/s12866-021-02190-6

Bacterial community in saline farmland soil on the Tibetan plateau: responding to salinization while resisting extreme environments
Cited by: 13
Author(s): Yi Qiang Li, Ying Hui Chai, Xu‐Sheng Wang, Li Huang, Ximing Luo, Cheng Qiu, Qing Hai Liu, Xiangyu Guan
Software Mentions: 1
Published: over 3 years ago

10.1186/s12879-019-4279-6

Association between the vaginal microbiome and high-risk human papillomavirus infection in pregnant Chinese women
Cited by: 36
Author(s): Yulian Chen, Zubei Hong, Wenjing Wang, Liyi Gu, Hua Gao, Lihua Qiu, Wen Di
Software Mentions: 1
Published: over 5 years ago

10.1186/s12879-020-05324-9

Human papillomavirus infection and cervical intraepithelial neoplasia progression are associated with increased vaginal microbiome diversity in a Chinese cohort
Cited by: 56
Author(s): Yulian Chen, Xingdi Qiu, Wenjing Wang, Dong Li, Anyue Wu, Zubei Hong, Wen Di, Lihua Qiu
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0063985

Symbiodinium Community Composition in Scleractinian Corals Is Not Affected by Life-Long Exposure to Elevated Carbon Dioxide
Cited by: 26
Author(s): Sam H. C. Noonan, Katharina Fabricius, Craig Humphrey
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0062885

Molecular Characterization of the Fecal Microbiota in Patients with Nonalcoholic Steatohepatitis – A Longitudinal Study
Cited by: 258
Author(s): Vincent Wai‐Sun Wong, Chi‐Shing Tse, Tommy Tsan-Yuk Lam, Grace Lai–Hung Wong, Angel Mei–Ling Chim, Winnie C.W. Chu, David W. K. Yeung, Patrick Tik Wan Law, Hoi Shan Kwan, Jun Yu, Joseph J.Y. Sung, Henry Lik–Yuen Chan
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0148607

Functional Resilience against Climate-Driven Extinctions – Comparing the Functional Diversity of European and North American Tree Floras
Cited by: 18
Author(s): Mario Liebergesell, Björn Reu, Ulrike Stahl, Martin Freiberg, Erik Welk, Jens Kattge, Johannes H. C. Cornelissen, Josep Peñuelas, Christian Wirth
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0221678

Immigration and establishment of Trypanosoma cruzi in Arequipa, Peru
Cited by: 7
Author(s): Alexander S. F. Berry, Renzo Salazar-Sánchez, Ricardo Castillo-Neyra, Katty Borrini-Mayorí, Claudia Chipana-Ramos, Melina Vargas-Maquera, Jenny Ancca-Juárez, César Náquira-Velarde, Michael Z. Levy, Dustin Brisson
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0037302

Salmonella Strains Isolated from Galápagos Iguanas Show Spatial Structuring of Serovar and Genomic Diversity
Cited by: 8
Author(s): Emily W. Lankau, Lenin Cruz Bedon, Roderick I. Mackie
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0078875

Exploratory Hydrocarbon Drilling Impacts to Arctic Lake Ecosystems
Cited by: 15
Author(s): Joshua R. Thienpont, Steven V. Kokelj, Jennifer B. Korosi, Elisa S. Cheng, Cyndy M. Desjardins, Linda E. Kimpe, Jules M. Blais, Michael F. J. Pisaric, John P. Smol
Software Mentions: 1
Published: about 11 years ago

10.1186/s12877-020-01652-2

Exploring the relationship between Nutrition, gUT microbiota, and BRain AgINg in community-dwelling seniors: the Italian NutBrain population-based cohort study protocol
Cited by: 4
Author(s): Federica Prinelli, Nithiya Jesuthasan, Marco Severgnini, Massimo Musicco, Fulvio Adorni, Maria Léa Corrêa Leite, Chiara Crespi, Sara Bernini
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0147039

Exploration of Human Salivary Microbiomes—Insights into the Novel Characteristics of Microbial Community Structure in Caries and Caries-Free Subjects
Cited by: 37
Author(s): Jianye Zhou, Nan Jiang, Shaoguo Wang, Xiao-Pan Hu, Kangli Jiao, Xiangyi He, Zhiqiang Li, Jizeng Wang
Software Mentions: 1
Published: almost 9 years ago

10.1128/mSystems.00167-18

Existing Climate Change Will Lead to Pronounced Shifts in the Diversity of Soil Prokaryotes
Cited by: 32
Author(s): Joshua Ladau, Yu Shi, Xin Jing, Jin‐Sheng He, Litong Chen, Xiangui Lin, Noah Fierer, Jack A. Gilbert, Katherine S. Pollard, Haiyan Chu
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0039146

Habitat Loss other than Fragmentation per se Decreased Nuclear and Chloroplast Genetic Diversity in a Monoecious Tree
Cited by: 17
Author(s): Xin Zhang, Miaomiao Shi, Dong-Wei Shen, Xiao‐Yong Chen
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0049867

Different Distribution Patterns between Putative Ercoid Mycorrhizal and Other Fungal Assemblages in Roots of Rhododendron decorum in the Southwest of China
Cited by: 20
Author(s): Lifu Sun, Kequan Pei, Fang Wang, Qiong Ding, Yanhong Bing, Bo Gao, Zhenming Yu, Yu Liang, Keping Ma
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0202746

Effect of seawater temperature, pH, and nutrients on the distribution and character of low abundance shallow water benthic foraminifera in the Galápagos
Cited by: 15
Author(s): Alexander F. Humphreys, Jochen Halfar, James C. Ingle, Derek P. Manzello, Claire E. Reymond, Hildegard Westphal, Bernhard Riegl
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0232662

Changes of Fusarium oxysporum f.sp. lactucae levels and soil microbial community during soil biosolarization using chitin as soil amendment
Cited by: 18
Author(s): Tara E. Randall, Jesús D. Fernández-Bayo, Duff R. Harrold, Yigal Achmon, Kelley Hestmark, Thomas R. Gordon, J. J. Stapleton, Christopher W. Simmons, Jean S. VanderGheynst
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0169056

Early Stages of Sea-Level Rise Lead To Decreased Salt Marsh Plant Diversity through Stronger Competition in Mediterranean-Climate Marshes
Cited by: 9
Author(s): Akana E. Noto, Jonathan B. Shurin
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0210768

Plant biomass and soil organic carbon are main factors influencing dry-season ecosystem carbon rates in the coastal zone of the Yellow River Delta
Cited by: 13
Author(s): Yong Li, Haidong Wu, Jinzhi Wang, Lijuan Cui, Dashuan Tian, Jinsong Wang, Xiaodong Zhang, Lijun Yan, Zhongqing Yan, Kerou Zhang, Xiaoming Kang, Bing Song
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12864-018-5179-7

Population genomics and climate adaptation of a C4 perennial grass, Panicum hallii (Poaceae)
Cited by: 7
Author(s): Brian W. Gould, Juan Diego Palacio-Mejía, Jerry Jenkins, Sujan Mamidi, Kerrie Barry, Jeremy Schmutz, Thomas E. Juenger, David B. Lowry
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0148268

Exploring the Leaf Beetle Fauna (Coleoptera: Chrysomelidae) of an Ecuadorian Mountain Forest Using DNA Barcoding
Cited by: 18
Author(s): Birthe Thormann, Dirk Ahrens, Diego Marín Armijos, Marcell K. Peters, Thomas Wagner, Johann‐Wolfgang Wägele
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12864-020-06860-z

Comparative analysis of single-cell transcriptomics in human and zebrafish oocytes
Cited by: 9
Author(s): Handan Can, Sree Krishna Chanumolu, Elena González-Muñoz, Sukumal Prukudom, Hasan H. Otu, José B. Cibelli
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0113207

Key Processes for Cheirolophus (Asteraceae) Diversification on Oceanic Islands Inferred from AFLP Data
Cited by: 13
Author(s): Daniel Vitales, Alfredo García‐Fernández, Jaume Pellicer, Joan Vallès, Arnoldo Santos‐Guerra, Robyn S. Cowan, Michael F. Fay, Oriane Hidalgo, Teresa Garnatje
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0110854

Effects of Traditional Flood Irrigation on Invertebrates in Lowland Meadows
Cited by: 13
Author(s): Jens Schirmel, Martin Alt, Isabell Rudolph, Martin H. Entling
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0034924

Demersal Fish Assemblages and Spatial Diversity Patterns in the Arctic-Atlantic Transition Zone in the Barents Sea
Cited by: 50
Author(s): Edda Johannesen, Åge S. Høines, Andrey V. Dolgov, Maria Fossheim
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0138967

Stable Associations Masked by Temporal Variability in the Marine Copepod Microbiome
Cited by: 47
Author(s): Pia H. Moisander, Andrew D. Sexton, Meaghan C. Daley
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0217401

Enhanced biological removal of intermittent VOCs and deciphering the roles of sodium alginate and polyvinyl alcohol in biofilm formation
Cited by: 5
Author(s): Rongfang Feng, Gang Zhao, Yonggang Yang, Meiying Xu, Shaobin Huang, Guoping Sun, Jun Guo, Jianjun Li
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0083241

Arbuscular Mycorrhizal Fungal Networks Vary throughout the Growing Season and between Successional Stages
Cited by: 59
Author(s): Alison E. Bennett, Tim J. Daniell, Maarja Öpik, John Davison, Mari Moora, Martin Zobel, Marc‐André Selosse, Darren M. Evans
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12864-016-2991-9

Gene content dissimilarity for subclassification of highly similar microbial strains
Cited by: 12
Author(s): Qichao Tu, Liwu Lin
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0231865

Lactobacillus reuteri attenuated allergic inflammation induced by HDM in the mouse and modulated gut microbes
Cited by: 43
Author(s): Lingzhi Li, Zhifeng Fang, Xinyang Liu, Wenbin Hu, Wenwei Liu, Yuan‐Kun Lee, Jianxin Zhao, Hao Zhang
Software Mentions: 1
Published: over 4 years ago

10.3390/ani11051390

Intestinal Microbes of Hooded Cranes (Grus monacha) Wintering in Three Lakes of the Middle and Lower Yangtze River Floodplain
Cited by: 3
Author(s): Jingjing Gu, Lizhi Zhou
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0198489

Environmental drivers of forest structure and stem turnover across Venezuelan tropical forests
Cited by: 22
Author(s): Emilio Vilanova Torre, Hirma Ramírez‐Angulo, Armando Torres‐Lezama, Gerardo Aymard, Luis E. Gámez, Cristabel Durán, Lionel Hernández, R. Herrera, Geertje M. F. van der Heijden, Oliver L. Phillips, Gregory J. Ettl
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0067271

Impacts of an Invasive Non-Native Annual Weed, Impatiens glandulifera, on Above- and Below-Ground Invertebrate Communities in the United Kingdom
Cited by: 56
Author(s): Robert A. Tanner, Sonal Varia, René Eschen, Suzy V. Wood, Sean T. Murphy, Alan C. Gange
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0187273

Biodiversity conservation values of fragmented communally reserved forests, managed by indigenous people, in a human-modified landscape in Borneo
Cited by: 10
Author(s): Yayoi Takeuchi, Ryoji Soda, Bibian Diway, Tinjan A.K. Kuda, Michiko Nakagawa, Hidetoshi Nagamasu, Tohru Nakashizuka
Software Mentions: 1
Published: almost 7 years ago

10.3390/ani11010233

Is Intestinal Bacterial Diversity Enhanced by Trans-Species Spread in the Mixed-Species Flock of Hooded Crane (Grus monacha) and Bean Goose (Anser fabalis) Wintering in the Lower and Middle Yangtze River Floodplain?
Cited by: 6
Author(s): Zhuqing Yang, Lizhi Zhou
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0134234

Oral Administration of P. gingivalis Induces Dysbiosis of Gut Microbiota and Impaired Barrier Function Leading to Dissemination of Enterobacteria to the Liver
Cited by: 231
Author(s): Mayuka Nakajima, Kei Arimatsu, Tamotsu Kato, Yukio Matsuda, Takayoshi Minagawa, Naoki Takahashi, Hiroshi Ohno, Kazuhisa Yamazaki
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-018-4721-y

Complex signatures of genomic variation of two non-model marine species in a homogeneous environment
Cited by: 16
Author(s): Erica S. Nielsen, Romina Henriques, Robert J. Toonen, Ingrid S. Knapp, Baocheng Guo, Sophie von der Heyden
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0090289

Generalization of the Partitioning of Shannon Diversity
Cited by: 62
Author(s): Éric Marcon, Ivan Scotti, Bruno Hérault, Vivien Rossi, Gabriel Lang
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2164-15-753

Functional gene arrays-based analysis of fecal microbiomes in patients with liver cirrhosis
Cited by: 33
Author(s): Yanfei Chen, Nan Qin, Jing Guo, Guirong Qian, Daiqiong Fang, Ding Shi, Min Xu, Fan Yang, Zhili He, Joy D. Van Nostrand, Tong Yuan, Ye Deng, Jizhong Zhou, Lanjuan Li
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0133301

Evaluating Temporal Consistency in Marine Biodiversity Hotspots
Cited by: 11
Author(s): Susan E. Piacenza, Lindsey L. Thurman, Allison K. Barner, Cassandra E. Benkwitt, Kate S. Boersma, Elizabeth B. Cerny-Chipman, Kurt E. Ingeman, Tye L. Kindinger, Amy J. Lindsley, Jake R. Nelson, Jeffrey J. Reimer, Jennifer C. Rowe, Chenchen Shen, Kevin A. Thompson, Selina S. Heppell
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0157505

Large-Scale Monitoring of Plants through Environmental DNA Metabarcoding of Soil: Recovery, Resolution, and Annotation of Four DNA Markers
Cited by: 105
Author(s): Nicole A Fahner, Shadi Shokralla, Donald J. Baird, Mehrdad Hajibabaei
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0166669

Vertical Structure of Phyllosphere Fungal Communities in a Tropical Forest in Thailand Uncovered by High-Throughput Sequencing
Cited by: 23
Author(s): Ayako Izuno, Mamoru Kanzaki, Taksin Artchawakom, Chongrak Wachrinrat, Yuji Isagi
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-018-29796-7

Classification and Regression Tree Approach for Prediction of Potential Hazards of Urban Airborne Bacteria during Asian Dust Events
Cited by: 33
Author(s): Keunje Yoo, Hyunji Yoo, Jae Min Lee, Sudheer Kumar Shukla, Joonhong Park
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0211209

Characterization of bacterioplankton communities from a hatchery recirculating aquaculture system (RAS) for juvenile sole (Solea senegalensis) production
Cited by: 15
Author(s): Letícia N. Duarte, Francisco J. R. C. Coelho, Vanessa Oliveira, Daniel F. R. Cleary, Patrícia Martins, Newton C. M. Gomes
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0037679

Genetic Variation in Functional Traits Influences Arthropod Community Composition in Aspen (Populus tremula L.)
Cited by: 69
Author(s): Kathryn M. Robinson, Pär K. Ingvarsson, Stefan Jansson, Benedicte Riber Albrectsen
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0240264

Stimbiotic supplementation improved performance and reduced inflammatory response via stimulating fiber fermenting microbiome in weaner pigs housed in a poor sanitary environment and fed an antibiotic-free low zinc oxide diet
Cited by: 26
Author(s): Hyun Min Cho, Gemma González-Ortiz, Diego Melo-Durán, Jung Min Heo, Gustavo Cordero, M.R. Bedford, Jae-Cheol Kim
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-018-30769-z

Rhizobacterial community structure in response to nitrogen addition varied between two Mollisols differing in soil organic carbon
Cited by: 7
Author(s): Tengxiang Lian, Zhenhua Yu, Junjie Liu, Yansheng Li, Guanghua Wang, Xiaobing Liu, Stephen J. Herbert, Jianzhong Wu, Jian Jin
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-016-2700-8

Piglet nasal microbiota at weaning may influence the development of Glässer’s disease during the rearing period
Cited by: 50
Author(s): Florencia Correa‐Fiz, Lorenzo Fraile, Virginia Aragón
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-020-07316-0

Whole genomic comparative analysis of Streptococcus pneumoniae serotype 1 isolates causing invasive and non-invasive infections among children under 5 years in Casablanca, Morocco
Cited by: 2
Author(s): Néhémie Nzoyikorera, Idrissa Diawara, Pablo Fresia, Fakhreddine Maaloum, Khalid Katfy, Kaotar Nayme, Mossaab Maaloum, Jennifer Cornick, Chrispin Chaguza, Mohammed Timinouni, Houria Belabess, Khalid Zerouali, Naima Elmdaghri
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0193354

Cryptic invasion of a parasitic copepod: Compromised identification when morphologically similar invaders co-occur in invaded ecosystems
Cited by: 7
Author(s): M. Anouk Goedknegt, David W. Thieltges, Jaap van der Meer, K. Mathias Wegner, Pieternella C. Luttikhuizen
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2148-13-79

Testing the inhibitory cascade model in Mesozoic and Cenozoic mammaliaforms
Cited by: 39
Author(s): Thomas J. D. Halliday, Anjali Goswami
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0148512

Biogeography and Photosynthetic Biomass of Arctic Marine Pico-Eukaroytes during Summer of the Record Sea Ice Minimum 2012
Cited by: 65
Author(s): Katja Metfies, Wilken-Jon von Appen, Estelle Kilias, Anja Nicolaus, Eva‐Maria Nöthig
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms22052508

Effector Profiles of Endophytic Fusarium Associated with Asymptomatic Banana (Musa sp.) Hosts
Cited by: 9
Author(s): Elizabeth Czislowski, Isabel Zeil‐Rolfe, E. A. B. Aitken
Software Mentions: 1
Published: over 3 years ago

10.1186/s12862-019-1443-y

Genetic and morphological divergence among three closely related Phrynocephalus species (Agamidae)
Cited by: 13
Author(s): Chaochao Hu, Yanqing Wu, Lan Ma, Yijing Chen, Xiang Ji
Software Mentions: 1
Published: over 5 years ago

10.3390/ani9100761

Bovine Breeds Identification by Trichological Analysis
Cited by: 4
Author(s): Gisele Aparecida Félix, Maria Clorínda Soares Fíoravantí, Martino Cassandro, Nicola Tormen, Juliana Quadros, R. S. Juliano, A. A. do Egito, Maria Ivete de Moura, Ubiratan Piovezan
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0061048

PACo: A Novel Procrustes Application to Cophylogenetic Analysis
Cited by: 222
Author(s): Juan Antonio Balbuena, Raúl Míguez-Lozano, Isabel Blasco‐Costa
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0189313

The relationship between observational scale and explained variance in benthic communities
Cited by: 6
Author(s): Adrienne M. Flanagan, Roger D. Flood, Michael Frisk, Corey Garza, Glenn R. Lopez, Nicole Maher, Robert M. Cerrato
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0088982

The Impact of Different DNA Extraction Kits and Laboratories upon the Assessment of Human Gut Microbiota Composition by 16S rRNA Gene Sequencing
Cited by: 213
Author(s): Nicholas A Kennedy, Alan W. Walker, Susan H. Berry, Sylvia H. Duncan, Freda M. Farquarson, Petra Louis, John Thomson, Jack Satsangi, Harry J. Flint, Julian Parkhill, Charlie W Lees, Georgina L. Hold
Software Mentions: 1
Published: over 10 years ago

10.1186/s12862-014-0251-7

Body size and allometric shape variation in the molly Poecilia viviparaalong a gradient of salinity and predation
Cited by: 21
Author(s): Márcio S. Araújo, S. Iván Pérez, Maria Julia C Magazoni, Ana Cristina Petry
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0214959

Comparing the effects of asynchronous herbivores on New Zealand montane vegetation communities
Cited by: 3
Author(s): Jamie R. Wood, Janet M. Wilmshurst
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0150184

Short-Term and Long-Term Biological Effects of Chronic Chemical Contamination on Natural Populations of a Marine Bivalve
Cited by: 42
Author(s): Marine Breitwieser, Amélia Viricel, Marianne Graber, Laurence Murillo, Vanessa Becquet, Carine Churlaud, Ingrid Fruitier-Arnaudin, Valérie Huet, Camille Lacroix, Eric Pante, Stéphane Le Floch, Hélène Thomas‐Guyon
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0092578

The Systemic Inflammatory Response to Clostridium difficile Infection
Cited by: 53
Author(s): Krishna Rao, John R. Erb-Downward, Seth T. Walk, Dejan Micić, Nicole R. Falkowski, Kavitha Santhosh, Jill A. Mogle, Cathrin Ring, Vincent B. Young, Gary B. Huffnagle, David M. Aronoff
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-018-32920-2

Use of sugarcane–soybean intercropping in acid soil impacts the structure of the soil fungal community
Cited by: 26
Author(s): Tengxiang Lian, Yinghui Mu, Qibin Ma, Yanbo Cheng, Rui Gao, Zhandong Cai, Bin Jiang, Hai Nian
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0248216

Sampling efficiency of a protocol to measure Odonata diversity in tropical streams
Cited by: 8
Author(s): Joana Darc Batista, Victor Rennan Santos Ferreira, Helena Soares Ramos Cabette, Lourivaldo Amâncio de Castro, Paulo de Marco Júnior, Leandro Juen
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0217590

Limited directed seed dispersal in the canopy as one of the determinants of the low hemi-epiphytic figs’ recruitments in Bornean rainforests
Cited by: 10
Author(s): Miyabi Nakabayashi, Yoichi Inoue, Abdul Hamid Ahmad, Masako Izawa
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-018-33186-4

Microclimate exerts greater control over litter decomposition and enzyme activity than litter quality in an alpine forest-tundra ecotone
Cited by: 18
Author(s): Yamei Chen, Yang Liu, Jian Zhang, Wanqin Yang, Runlian He, Chao Deng
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-33346-6

Floristic diversity in different urban ecological niches of a southern European city
Cited by: 23
Author(s): Mirko Salinitro, Alessandro Alessandrini, Alessandro Zappi, Dora Melucci, Annalisa Tassoni
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0165832

Microbial Community Evolution Is Significantly Impacted by the Use of Calcium Isosaccharinic Acid as an Analogue for the Products of Alkaline Cellulose Degradation
Cited by: 8
Author(s): Isaac Ampaabeng Kyeremeh, Christopher J. Charles, Simon P. Rout, Andrew P. Laws, Paul Humphreys
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0153977

Geomorphology Drives Amphibian Beta Diversity in Atlantic Forest Lowlands of Southeastern Brazil
Cited by: 11
Author(s): Amom Mendes Luiz, Thiago Augusto Leão-Pires, Ricardo J. Sawaya
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0080692

Disturbance Frequency Determines Morphology and Community Development in Multi-Species Biofilm at the Landscape Scale
Cited by: 15
Author(s): Kim Milferstedt, Gaëlle Santa-Catalina, Jean‐Jacques Godon, Renaud Escudié, Nicolas Bernet
Software Mentions: 1
Published: almost 11 years ago

10.1038/s41598-018-33799-9

Limited congruence exhibited across microbial, meiofaunal and macrofaunal benthic assemblages in a heterogeneous coastal environment
Cited by: 6
Author(s): S Cronin-O’Reilly, John D. Taylor, I Jermyn, A. Louise Allcock, Michael Cunliffe, Mark P. Johnson
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0120013

A Survey of UK Healthcare Workers’ Attitudes on Volunteering to Help with the Ebola Outbreak in West Africa
Cited by: 18
Author(s): Lance Turtle, Fiona McGill, Judy Bettridge, Claire Matata, Robert M. Christley, Tom Solomon
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0172113

Impact of wall shear stress on initial bacterial adhesion in rotating annular reactor
Cited by: 47
Author(s): Thibaut Saur, Émilie Morin, Frédéric Habouzit, Nicolas Bernet, Renaud Escudié
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0175808

Community barcoding reveals little effect of ocean acidification on the composition of coastal plankton communities: Evidence from a long-term mesocosm study in the Gullmar Fjord, Skagerrak
Cited by: 10
Author(s): Julia Langer, Rahul Sharma, Susanne I. Schmidt, Sebastian Bahrdt, Henriette G. Horn, María Algueró-Muñiz, Bora Nam, Eric P. Achterberg, Ulf Riebesell, Maarten Boersma, Marco Thines, Klaus Schwenk
Software Mentions: 1
Published: over 7 years ago

10.3390/nu13093159

Protein Intake, Metabolic Status and the Gut Microbiota in Different Ethnicities: Results from Two Independent Cohorts
Cited by: 5
Author(s): Pierre Bel Lassen, Ilias Attaye, Solia Adriouch, Mary Nicolaou, Judith Aron‐Wisnewsky, Trine Nielsen, Rima Chakaroun, Emmanuelle Le Chatelier, Kristoffer Forslund, Eugeni Belda, Peer Bork, Fredrik Bäckhed, M Stumvoll, Oluf Pedersen, Hilde Herrema, Albert K. Groen, Sara‐Joan Pinto‐Sietsma, Aeilko H. Zwinderman, Max Nieuwdorp, Karine Clément, on behalf of Metacardis Consortium
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pone.0086991

Resource Availability and Spatial Heterogeneity Control Bacterial Community Response to Nutrient Enrichment in Lakes
Cited by: 34
Author(s): Kathi Jo Jankowski, Daniel E. Schindler, M. Claire Horner-Devine
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0235348

Microbiome diversity in Diaphorina citri populations from Kenya and Tanzania shows links to China
Cited by: 8
Author(s): Inusa Jacob Ajene, Fathiya M. Khamis, Bárbara van Asch, Gerhard Pietersen, Brenda A. Rasowo, Fidelis L. O. Ombura, Anne Wambui Wairimu, Komivi Senyo Akutse, Mamoudou Sétamou, Samira A. Mohamed, Sunday Ekesi
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0257759

Effects of combined tannic acid/fluoride on sulfur transformations and methanogenic pathways in swine manure
Cited by: 1
Author(s): Frederik R. Dalby, Marcell Nikolausz, Martin N. Hansen, Anders Feilberg
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pone.0120085

Conservation Thinning in Secondary Forest: Negative but Mild Effect on Land Molluscs in Closed-Canopy Mixed Oak Forest in Sweden
Cited by: 8
Author(s): Birte Rancka, Ted von Proschwitz, Kristoffer Hylander, Frank Götmark
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0248584

Improvement of loperamide-induced slow transit constipation by Bifidobacterium bifidum G9-1 is mediated by the correction of butyrate production and neurotransmitter profile due to improvement in dysbiosis
Cited by: 19
Author(s): Yutaka Makizaki, Taiki Uemoto, Haruka Yokota, Miyuki Yamamoto, Yoshiki Tanaka, Hiroshi Ohno
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22105162

Morphological and Metabolite Responses of Potatoes under Various Phosphorus Levels and Their Amelioration by Plant Growth-Promoting Rhizobacteria
Cited by: 16
Author(s): Leangsrun Chea, Birgit Pfeiffer, Dominik Schneider, Rolf Daniel, Elke Pawelzik, Marcel Naumann
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0199556

trnL outperforms rbcL as a DNA metabarcoding marker when compared with the observed plant component of the diet of wild white-faced capuchins (Cebus capucinus, Primates)
Cited by: 31
Author(s): Elizabeth K. Mallott, Paul A. Garber, Ripan S. Malhi
Software Mentions: 1
Published: over 6 years ago

10.3390/nu13051738

Gut Microbiota Induced by Pterostilbene and Resveratrol in High-Fat-High-Fructose Fed Rats: Putative Role in Steatohepatitis Onset
Cited by: 15
Author(s): Iñaki Milton-Laskíbar, Laura Judith Marcos-Zambrano, Saioa Gómez‐Zorita, Alfredo Fernández‐Quintela, Enrique Carrillo de Santa Pau, J. Alfredo Martínéz, María Puy Portillo Baquedano
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0067726

Disentangling the Spatio-Environmental Drivers of Human Settlement: An Eigenvector Based Variation Decomposition
Cited by: 8
Author(s): Ralf Vandam, Eva Kaptijn, Bram Vanschoenwinkel
Software Mentions: 1
Published: over 11 years ago

10.1038/s41598-018-34736-6

Mycorrhizal fungal community structure in tropical humid soils under fallow and cropping conditions
Cited by: 9
Author(s): Martin Jemo, Driss Dhiba, Abeer Hashem, Lam‐Son Phan Tran
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2148-10-245

Mating system drives negative associations between morphological features in Schistosomatidae
Cited by: 3
Author(s): Sophie Beltran‐Bech, Yves Desdevises, Julien Portela, Jérôme Boissier
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0010276

An Extensive Alien Plant Inventory from the Inhabited Areas of Galapagos
Cited by: 96
Author(s): Anne Guézou, Mandy Trueman, Christopher E. Buddenhagen, Susana Chamorro, Ana Mireya Guerrero, Paola Pozo, Rachel Atkinson
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0230612

Carbon sequestration rates indicate ecosystem recovery following human disturbance in the equatorial Andes
Cited by: 7
Author(s): Marco Calderón-Loor, Francisco Cuesta, Esteban Pinto, William D. Gosling
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-018-36324-0

Distribution and correlation between phylogeny and functional traits of cowpea (Vigna unguiculata L. Walp.)-nodulating microsymbionts from Ghana and South Africa
Cited by: 25
Author(s): Mustapha Mohammed, Sanjay K. Jaiswal, Felix D. Dakora
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0156854

High Levels of Antibiotic Resistance Genes and Their Correlations with Bacterial Community and Mobile Genetic Elements in Pharmaceutical Wastewater Treatment Bioreactors
Cited by: 52
Author(s): Wenda Tao, Xuxiang Zhang, Fugeng Zhao, Kailong Huang, Haijun Ma, Wancheng Zhu, Lin Ye, Hongqiang Ren
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0202586

Spatial variation in the morphological traits of Pocillopora verrucosa along a depth gradient in Taiwan
Cited by: 24
Author(s): Derek Soto, Stéphane De Palmas, Ming Jay Ho, Vianney Denis
Software Mentions: 1
Published: over 6 years ago

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