10.1186/s12879-020-05324-9

Human papillomavirus infection and cervical intraepithelial neoplasia progression are associated with increased vaginal microbiome diversity in a Chinese cohort
Cited by: 56
Author(s): Yulian Chen, Xingdi Qiu, Wenjing Wang, Dong Li, Anyue Wu, Zubei Hong, Wen Di, Lihua Qiu
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-67528-y

Effects of biochar-based controlled release nitrogen fertilizer on nitrogen-use efficiency of oilseed rape (Brassica napus L.)
Cited by: 73
Author(s): Jiayuan Liao, Xiangrong Liu, Ang Hu, Haixing Song, Xiuzhi Chen, Zhenhua Zhang
Software Mentions: 1
Published: over 6 years ago

10.1186/s12877-020-01652-2

Exploring the relationship between Nutrition, gUT microbiota, and BRain AgINg in community-dwelling seniors: the Italian NutBrain population-based cohort study protocol
Cited by: 4
Author(s): Federica Prinelli, Nithiya Jesuthasan, Marco Severgnini, Massimo Musicco, Fulvio Adorni, Maria Léa Corrêa Leite, Chiara Crespi, Sara Bernini
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0214390

An island of wildlife in a human-dominated landscape: The last fragment of primary forest on the Osa Peninsula’s Golfo Dulce coastline, Costa Rica
Cited by: 6
Author(s): Beatriz Lopez Gutierrez, Angélica M. Almeyda Zambrano, Sandra L. Almeyda Zambrano, C. Gil, Stephanie A. Bohlman, Eduardo Avellan Arias, Guillermo Mulder, Clare N. Ols, Rodolfo Dirzo, Anneke M. DeLuycker, Karen D. Lewis, Eben N. Broadbent
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-020-68104-0

Disturbance history can increase functional stability in the face of both repeated disturbances of the same type and novel disturbances
Cited by: 5
Author(s): Sophia Elise Renes, Johanna Sjöstedt, Ingo Fetzer, Silke Langenheder
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0097925

The Macroecology of Airborne Pollen in Australian and New Zealand Urban Areas
Cited by: 58
Author(s): Simon Haberle, David M. J. S. Bowman, Rewi M. Newnham, Fay H. Johnston, Paul J. Beggs, Jeroen Buters, Bradley C. Campbell, Bircan Erbas, Ian D. Godwin, Brett J. Green, Alfredo Huete, Alison K. Jaggard, Danielle E. Medek, Frank Murray, Ed Newbigin, M. Thibaudon, Don Vicendese, Grant J. Williamson, Janet M. Davies
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0137429

Dysbiosis in the Gut Microbiota of Patients with Multiple Sclerosis, with a Striking Depletion of Species Belonging to Clostridia XIVa and IV Clusters
Cited by: 572
Author(s): Sachiko Miyake, Sangwan Kim, Wataru Suda, Koichiro Oshima, Masakazu Nakamura, Takako Matsuoka, Norio Chihara, Atsuko Tomita, Wakiro Sato, Seok Won Kim, Hidetoshi Morita, Masahira Hattori, Takashi Yamamura
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0024512

Flooding Greatly Affects the Diversity of Arbuscular Mycorrhizal Fungi Communities in the Roots of Wetland Plants
Cited by: 76
Author(s): Yutao Wang, Yelin Huang, Qiu Qiu, Guorong Xin, Zhongyi Yang, Suhua Shi
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0241371

High nitrogen concentration alter microbial community in Allium fistulosum rhizosphere
Cited by: 10
Author(s): Chen Zhao, Haifeng Ni, Lin Zhao, Lin Zhou, Orlando Borrás‐Hidalgo, Rongzong Cui
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0075969

Biotic and Abiotic Soil Properties Influence Survival of Listeria monocytogenes in Soil
Cited by: 87
Author(s): Aude Locatelli, Aymé Spor, Claudy Jolivet, Pascal Piveteau, Alain Hartmann
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0134848

Cleanroom Maintenance Significantly Reduces Abundance but Not Diversity of Indoor Microbiomes
Cited by: 45
Author(s): Alexander Mahnert, Parag Vaishampayan, Alexander J. Probst, Anna Auerbach, Christine Moissl-Eichinger, Kasthuri Venkateswaran, Gabriele Berg
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0114986

Unexpected High Diversity of Galling Insects in the Amazonian Upper Canopy: The Savanna Out There
Cited by: 35
Author(s): Genimar Rebouças Julião, Eduardo Martins Venticinque, Geraldo Wilson Fernandes, Peter W. Price
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0140751

Frugivory in Canopy Plants in a Western Amazonian Forest: Dispersal Systems, Phylogenetic Ensembles and Keystone Plants
Cited by: 23
Author(s): Pablo R. Stevenson, Andrés Link, Sebastián González‐Caro, María Fernanda Torres-Jiménez
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0120608

The Source of the River as a Nursery for Microbial Diversity
Cited by: 42
Author(s): Luiz Felipe Valter de Oliveira, Rogério Margis
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0242138

Mycobiome changes in the vitreous of post fever retinitis patients
Cited by: 10
Author(s): Kotakonda Arunasri, Malleswarapu Mahesh, Gumpili Sai Prashanthi, Rajagopalaboopathi Jayasudha, Sama Kalyana Chakravarthy, Mudit Tyagi, Rajeev Reddy Pappuru, Sisinthy Shivaji
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0036290

Individual to Community-Level Faunal Responses to Environmental Change from a Marine Fossil Record of Early Miocene Global Warming
Cited by: 4
Author(s): Christina L. Belanger
Software Mentions: 1
Published: over 14 years ago

10.1038/srep45308

Gut metagenomic analysis reveals prominent roles of Lactobacillus and cecal microbiota in chicken feed efficiency
Cited by: 170
Author(s): Wei Yan, Chang Sun, Jiahui Yuan, Ning Yang
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0123238

How Do Alien Plants Fit in the Space-Phylogeny Matrix?
Cited by: 5
Author(s): Şerban Procheş, Félix Forest, Sarah Jose, Michela De Dominicis, Syd Ramdhani, Timothy Wiggill
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0184517

Improving the antiprotozoal effect of saponins in the rumen by combination with glycosidase inhibiting iminosugars or by modification of their chemical structure
Cited by: 13
Author(s): E. Ramos-Morales, Gabriel de la Fuente, Robert J. Nash, Radek Bragança, S. Duval, Marc E. Bouillon, Martina Lahmann, C. J. Newbold
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0211718

Genetic dissection of agronomic and quality traits based on association mapping and genomic selection approaches in durum wheat grown in Southern Spain
Cited by: 25
Author(s): Rosa Mérida-García, Guozheng Liu, Sang He, Victoria González-Dugo, Gabriel Dorado, Sergio Gálvez, Ignacio Solís, Pablo J. Zarco‐Tejada, Jochen C. Reif, Pilar Hernández
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0198087

Effects of straw return on bacterial communities in a wheat-maize rotation system in the North China Plain
Cited by: 22
Author(s): Dali Yu, Zhiguo Wen, Xiumei Li, Xiaojun Song, Huijun Wu, Peilong Yang
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0056329

Bacterial Communities Associated with the Leaves and the Roots of Arabidopsis thaliana
Cited by: 588
Author(s): Natacha Bodenhausen, Matthew Horton, Joy Bergelson
Software Mentions: 1
Published: over 13 years ago

10.1038/s41598-020-68659-y

Preying on seals pushes killer whales from Norway above pollution effects thresholds
Cited by: 16
Author(s): Clare Andvik, Eve Jourdain, Anders Ruus, Jan Ludvig Lyche, Richard Karoliussen, Katrine Borgå
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0063985

Symbiodinium Community Composition in Scleractinian Corals Is Not Affected by Life-Long Exposure to Elevated Carbon Dioxide
Cited by: 26
Author(s): Sam H. C. Noonan, Katharina Fabricius, Craig Humphrey
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0016384

Analysis of the Lung Microbiome in the “Healthy” Smoker and in COPD
Cited by: 763
Author(s): John R. Erb-Downward, Deborah Thompson, MeiLan K. Han, Christine M. Freeman, Lisa McCloskey, Lindsay Schmidt, Vincent B. Young, Galen B. Toews, Jeffrey L. Curtis, Baskaran Sundaram, Fernando J. Martínez, Gary B. Huffnagle
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0062885

Molecular Characterization of the Fecal Microbiota in Patients with Nonalcoholic Steatohepatitis – A Longitudinal Study
Cited by: 258
Author(s): Vincent Wai‐Sun Wong, Chi‐Shing Tse, Tommy Tsan-Yuk Lam, Grace Lai–Hung Wong, Angel Mei–Ling Chim, Winnie C.W. Chu, David W. K. Yeung, Patrick Tik Wan Law, Hoi Shan Kwan, Jun Yu, Joseph J.Y. Sung, Henry Lik–Yuen Chan
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0086382

Host Specificity And Co-Speciation In Avian Haemosporidia In The Western Cape, South Africa
Cited by: 17
Author(s): Sharon Okanga, Graeme S. Cumming, Philip A. R. Hockey, Lisa J. Nupen, Jeffrey L. Peters
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0148607

Functional Resilience against Climate-Driven Extinctions – Comparing the Functional Diversity of European and North American Tree Floras
Cited by: 18
Author(s): Mario Liebergesell, Björn Reu, Ulrike Stahl, Martin Freiberg, Erik Welk, Jens Kattge, Johannes H. C. Cornelissen, Josep Peñuelas, Christian Wirth
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0221678

Immigration and establishment of Trypanosoma cruzi in Arequipa, Peru
Cited by: 7
Author(s): Alexander S. F. Berry, Renzo Salazar-Sánchez, Ricardo Castillo-Neyra, Katty Borrini-Mayorí, Claudia Chipana-Ramos, Melina Vargas-Maquera, Jenny Ancca-Juárez, César Náquira-Velarde, Michael Z. Levy, Dustin Brisson
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0037302

Salmonella Strains Isolated from Galápagos Iguanas Show Spatial Structuring of Serovar and Genomic Diversity
Cited by: 8
Author(s): Emily W. Lankau, Lenin Cruz Bedon, Roderick I. Mackie
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0025440

Multiscale Analyses of Mammal Species Composition – Environment Relationship in the Contiguous USA
Cited by: 13
Author(s): Rafi Kent, Avi Bar‐Massada, Yohay Carmel
Software Mentions: 1
Published: about 15 years ago

10.3390/ani9100761

Bovine Breeds Identification by Trichological Analysis
Cited by: 4
Author(s): Gisele Aparecida Félix, Maria Clorínda Soares Fíoravantí, Martino Cassandro, Nicola Tormen, Juliana Quadros, R. S. Juliano, A. A. do Egito, Maria Ivete de Moura, Ubiratan Piovezan
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0078875

Exploratory Hydrocarbon Drilling Impacts to Arctic Lake Ecosystems
Cited by: 15
Author(s): Joshua R. Thienpont, Steven V. Kokelj, Jennifer B. Korosi, Elisa S. Cheng, Cyndy M. Desjardins, Linda E. Kimpe, Jules M. Blais, Michael F. J. Pisaric, John P. Smol
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0101344

Rectal Swabs for Analysis of the Intestinal Microbiota
Cited by: 111
Author(s): Andries E. Budding, Matthijs E. Grasman, Anat Eck, Johannes A. Bogaards, Christina M. J. E. Vandenbroucke-Grauls, Adriaan A. van Bodegraven, Paul H. M. Savelkoul
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0073147

Optimising Bait for Pitfall Trapping of Amazonian Dung Beetles (Coleoptera: Scarabaeinae)
Cited by: 72
Author(s): Charles J. Marsh, Júlio Louzada, Wallace Beiroz, Robert M. Ewers
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0195385

DNA barcoding reveals seasonal shifts in diet and consumption of deep-sea fishes in wedge-tailed shearwaters
Cited by: 14
Author(s): Takashi Komura, Haruko Ando, Kazuo Horikoshi, Hajime Suzuki, Yuji Isagi
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0235473

Diatom aggregation when exposed to crude oil and chemical dispersant: Potential impacts of ocean acidification
Cited by: 7
Author(s): Jennifer Genzer, Manoj Kamalanathan, Laura Bretherton, Jessica Hillhouse, Chen Xu, Peter H. Santschi, Antonietta Quigg
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-018-5179-7

Population genomics and climate adaptation of a C4 perennial grass, Panicum hallii (Poaceae)
Cited by: 7
Author(s): Brian W. Gould, Juan Diego Palacio-Mejía, Jerry Jenkins, Sujan Mamidi, Kerrie Barry, Jeremy Schmutz, Thomas E. Juenger, David B. Lowry
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0147039

Exploration of Human Salivary Microbiomes—Insights into the Novel Characteristics of Microbial Community Structure in Caries and Caries-Free Subjects
Cited by: 37
Author(s): Jianye Zhou, Nan Jiang, Shaoguo Wang, Xiao-Pan Hu, Kangli Jiao, Xiangyi He, Zhiqiang Li, Jizeng Wang
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0039146

Habitat Loss other than Fragmentation per se Decreased Nuclear and Chloroplast Genetic Diversity in a Monoecious Tree
Cited by: 17
Author(s): Xin Zhang, Miaomiao Shi, Dong-Wei Shen, Xiao‐Yong Chen
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0049867

Different Distribution Patterns between Putative Ercoid Mycorrhizal and Other Fungal Assemblages in Roots of Rhododendron decorum in the Southwest of China
Cited by: 20
Author(s): Lifu Sun, Kequan Pei, Fang Wang, Qiong Ding, Yanhong Bing, Bo Gao, Zhenming Yu, Yu Liang, Keping Ma
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0202746

Effect of seawater temperature, pH, and nutrients on the distribution and character of low abundance shallow water benthic foraminifera in the Galápagos
Cited by: 15
Author(s): Alexander F. Humphreys, Jochen Halfar, James C. Ingle, Derek P. Manzello, Claire E. Reymond, Hildegard Westphal, Bernhard Riegl
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0117791

A Diverse Assemblage of Reef Corals Thriving in a Dynamic Intertidal Reef Setting (Bonaparte Archipelago, Kimberley, Australia)
Cited by: 58
Author(s): Zoe T. Richards, Rodrigo Garcia, Carden C. Wallace, Natalie L. Rosser, Paul Muir
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0232662

Changes of Fusarium oxysporum f.sp. lactucae levels and soil microbial community during soil biosolarization using chitin as soil amendment
Cited by: 18
Author(s): Tara E. Randall, Jesús D. Fernández-Bayo, Duff R. Harrold, Yigal Achmon, Kelley Hestmark, Thomas R. Gordon, J. J. Stapleton, Christopher W. Simmons, Jean S. VanderGheynst
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0169056

Early Stages of Sea-Level Rise Lead To Decreased Salt Marsh Plant Diversity through Stronger Competition in Mediterranean-Climate Marshes
Cited by: 9
Author(s): Akana E. Noto, Jonathan B. Shurin
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0210768

Plant biomass and soil organic carbon are main factors influencing dry-season ecosystem carbon rates in the coastal zone of the Yellow River Delta
Cited by: 13
Author(s): Yong Li, Haidong Wu, Jinzhi Wang, Lijuan Cui, Dashuan Tian, Jinsong Wang, Xiaodong Zhang, Lijun Yan, Zhongqing Yan, Kerou Zhang, Xiaoming Kang, Bing Song
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0245333

MinION Nanopore-based detection of Clavibacter nebraskensis, the corn Goss’s wilt pathogen, and bacteriomic profiling of necrotic lesions of naturally-infected leaf samples
Cited by: 10
Author(s): Ran Xu, Lorne R. Adam, Julie T. Chapados, Atta Soliman, Fouad Daayf, James T. Tambong
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0035969

Land Cover and Rainfall Interact to Shape Waterbird Community Composition
Cited by: 13
Author(s): Colin E. Studds, William V. DeLuca, Matthew E. Baker, Ryan S. King, Peter P. Marra
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0204128

Linking root exudates to functional plant traits
Cited by: 55
Author(s): Katharina Herz, Sophie Dietz, Karin Gorzolka, Sylvia Haider, Ute Jandt, Dierk Scheel, Helge Bruelheide
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0148268

Exploring the Leaf Beetle Fauna (Coleoptera: Chrysomelidae) of an Ecuadorian Mountain Forest Using DNA Barcoding
Cited by: 18
Author(s): Birthe Thormann, Dirk Ahrens, Diego Marín Armijos, Marcell K. Peters, Thomas Wagner, Johann‐Wolfgang Wägele
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0178791

Habitat modification and seasonality influence avian haemosporidian parasite distributions in southeastern Brazil
Cited by: 31
Author(s): Francisco C. Ferreira, Raquel A. Rodrigues, Vincenzo A. Ellis, Lemuel Olívio Leite, Magno Augusto Zazá Borges, Érika Martins Braga
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0113207

Key Processes for Cheirolophus (Asteraceae) Diversification on Oceanic Islands Inferred from AFLP Data
Cited by: 13
Author(s): Daniel Vitales, Alfredo García‐Fernández, Jaume Pellicer, Joan Vallès, Arnoldo Santos‐Guerra, Robyn S. Cowan, Michael F. Fay, Oriane Hidalgo, Teresa Garnatje
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0110854

Effects of Traditional Flood Irrigation on Invertebrates in Lowland Meadows
Cited by: 13
Author(s): Jens Schirmel, Martin Alt, Isabell Rudolph, Martin H. Entling
Software Mentions: 1
Published: almost 12 years ago

10.1038/s41598-020-69450-9

Evaluation of PCR conditions for characterizing bacterial communities with full-length 16S rRNA genes using a portable nanopore sequencer
Cited by: 24
Author(s): So Fujiyoshi, Ai Muto-Fujita, Fumito Maruyama
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0201307

Habitat, species richness and hantaviruses of sigmodontine rodents within the Interior Atlantic Forest, Paraguay
Cited by: 12
Author(s): Gillian Eastwood, Jeremy V. Camp, Yong Kyu Chu, Aubrey M. Sawyer, Robert Dale Owen, Xueyuan Cao, Martha J. Taylor, Leonardo Valdivieso-Torres, Richard D. Sage, Ashley Yu, Doug Goodin, Vicente J. Martínez Bruyn, Ryan C. McAllister, Laura Rodríguez, Evan P. William, Colleen B. Jonsson
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0034924

Demersal Fish Assemblages and Spatial Diversity Patterns in the Arctic-Atlantic Transition Zone in the Barents Sea
Cited by: 50
Author(s): Edda Johannesen, Åge S. Høines, Andrey V. Dolgov, Maria Fossheim
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0138967

Stable Associations Masked by Temporal Variability in the Marine Copepod Microbiome
Cited by: 47
Author(s): Pia H. Moisander, Andrew D. Sexton, Meaghan C. Daley
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0179739

Microbiota in anorexia nervosa: The triangle between bacterial species, metabolites and psychological tests
Cited by: 161
Author(s): Francesca Borgo, Alessandra Riva, Alberto Benetti, Maria Cristina Casiraghi, Sara Bertelli, Stefania Garbossa, Simona Anselmetti, Silvio Scarone, Antonio E. Pontiroli, Giulia Morace, Elisa Borghi
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-020-06860-z

Comparative analysis of single-cell transcriptomics in human and zebrafish oocytes
Cited by: 9
Author(s): Handan Can, Sree Krishna Chanumolu, Elena González-Muñoz, Sukumal Prukudom, Hasan H. Otu, José B. Cibelli
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0182579

Impacts of leachates from livestock carcass burial and manure heap sites on groundwater geochemistry and microbial community structure
Cited by: 11
Author(s): Man Jae Kwon, Seong Taek Yun, Baknoon Ham, Jehee Lee, Jun Seop Oh, Weon Wha Jheong
Software Mentions: 1
Published: about 9 years ago

10.1186/s12864-016-2991-9

Gene content dissimilarity for subclassification of highly similar microbial strains
Cited by: 12
Author(s): Qichao Tu, Liwu Lin
Software Mentions: 1
Published: about 10 years ago

10.3390/ani10122341

Effects of Oat Hay Content in Diets on Nutrient Metabolism and the Rumen Microflora in Sheep
Cited by: 19
Author(s): Xiaopeng An, Lingyun Zhang, Jing Luo, Shengguo Zhao, Ting Jiao
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0217401

Enhanced biological removal of intermittent VOCs and deciphering the roles of sodium alginate and polyvinyl alcohol in biofilm formation
Cited by: 5
Author(s): Rongfang Feng, Gang Zhao, Yonggang Yang, Meiying Xu, Shaobin Huang, Guoping Sun, Jun Guo, Jianjun Li
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0083241

Arbuscular Mycorrhizal Fungal Networks Vary throughout the Growing Season and between Successional Stages
Cited by: 59
Author(s): Alison E. Bennett, Tim J. Daniell, Maarja Öpik, John Davison, Mari Moora, Martin Zobel, Marc‐André Selosse, Darren M. Evans
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0231865

Lactobacillus reuteri attenuated allergic inflammation induced by HDM in the mouse and modulated gut microbes
Cited by: 43
Author(s): Lingzhi Li, Zhifeng Fang, Xinyang Liu, Wenbin Hu, Wenwei Liu, Yuan‐Kun Lee, Jianxin Zhao, Hao Zhang
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0252605

Microbiomes of commercially-available pine nuts and sesame seeds
Cited by: 2
Author(s): Megan Fay, Joelle K. Salazar, Padmini Ramachandran, Diana Stewart
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0198489

Environmental drivers of forest structure and stem turnover across Venezuelan tropical forests
Cited by: 22
Author(s): Emilio Vilanova Torre, Hirma Ramírez‐Angulo, Armando Torres‐Lezama, Gerardo Aymard, Luis E. Gámez, Cristabel Durán, Lionel Hernández, R. Herrera, Geertje M. F. van der Heijden, Oliver L. Phillips, Gregory J. Ettl
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0221998

Ectomycorrhizal fungal communities of secondary tropical forests dominated by Tristaniopsis in Bangka Island, Indonesia
Cited by: 5
Author(s): Helbert, Maman Turjaman, Kazuhide Nara
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0218999

A20 in dendritic cells restrains intestinal anti-bacterial peptide expression and preserves commensal homeostasis
Cited by: 6
Author(s): Alice Talpin, Michael G. Kattah, Rommel Advincula, Douglas Fadrosh, Kole Lynch, Brandon LaMere, Kei E. Fujimura, Nabeetha A. Nagalingam, Barbara A. Malynn, Susan V. Lynch, Averil Ma
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0067271

Impacts of an Invasive Non-Native Annual Weed, Impatiens glandulifera, on Above- and Below-Ground Invertebrate Communities in the United Kingdom
Cited by: 56
Author(s): Robert A. Tanner, Sonal Varia, René Eschen, Suzy V. Wood, Sean T. Murphy, Alan C. Gange
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0254998

Large-scale survey of prion protein genetic variability in scrapie disease-free goats from the United States
Cited by: 1
Author(s): Mohamed Zeineldin, Kimberly A Lehman, N.J. Urie, Matthew A. Branan, Alyson M. Wiedenheft, Katherine L. Marshall, Suelee Robbe‐Austerman, Tyler C. Thacker
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0187273

Biodiversity conservation values of fragmented communally reserved forests, managed by indigenous people, in a human-modified landscape in Borneo
Cited by: 10
Author(s): Yayoi Takeuchi, Ryoji Soda, Bibian Diway, Tinjan A.K. Kuda, Michiko Nakagawa, Hidetoshi Nagamasu, Tohru Nakashizuka
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0103423

Ecological Consequences of Shifting the Timing of Burning Tallgrass Prairie
Cited by: 30
Author(s): E. Gene Towne, Joseph M. Craine
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0080955

Coastal Fish Assemblages Reflect Geological and Oceanographic Gradients Within An Australian Zootone
Cited by: 36
Author(s): Euan S. Harvey, Michael Cappo, Gary A. Kendrick, Dianne L. McLean
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0134234

Oral Administration of P. gingivalis Induces Dysbiosis of Gut Microbiota and Impaired Barrier Function Leading to Dissemination of Enterobacteria to the Liver
Cited by: 231
Author(s): Mayuka Nakajima, Kei Arimatsu, Tamotsu Kato, Yukio Matsuda, Takayoshi Minagawa, Naoki Takahashi, Hiroshi Ohno, Kazuhisa Yamazaki
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0141510

The Paternal Landscape along the Bight of Benin – Testing Regional Representativeness of West-African Population Samples Using Y-Chromosomal Markers
Cited by: 8
Author(s): Maarten Larmuseau, Andrea Vessi, Mark A. Jobling, Anneleen Van Geystelen, Giuseppina Primativo, G. Biondi, Cristina Martínez-Labarga, Claudio Ottoni, Ronny Decorte, Olga Rickards
Software Mentions: 1
Published: almost 11 years ago

10.1038/s41598-020-70402-6

Strong positively diversity–productivity relationships in the natural sub-alpine meadow communities across time are up to superior performers
Cited by: 3
Author(s): Kai Jiang, Zhaoyuan Tan, Qifang He, Lu Wang, Yang Zhao, Xinhang Sun, Weichen Hou, Wenxing Long, Hui Zhang
Software Mentions: 1
Published: about 6 years ago

10.1186/s12864-018-4721-y

Complex signatures of genomic variation of two non-model marine species in a homogeneous environment
Cited by: 16
Author(s): Erica S. Nielsen, Romina Henriques, Robert J. Toonen, Ingrid S. Knapp, Baocheng Guo, Sophie von der Heyden
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0090289

Generalization of the Partitioning of Shannon Diversity
Cited by: 62
Author(s): Éric Marcon, Ivan Scotti, Bruno Hérault, Vivien Rossi, Gabriel Lang
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0042238

Drosophila Regulate Yeast Density and Increase Yeast Community Similarity in a Natural Substrate
Cited by: 112
Author(s): Judy A. Stamps, Louie H. Yang, Verónica L. Morales, Kyria Boundy‐Mills
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0133301

Evaluating Temporal Consistency in Marine Biodiversity Hotspots
Cited by: 11
Author(s): Susan E. Piacenza, Lindsey L. Thurman, Allison K. Barner, Cassandra E. Benkwitt, Kate S. Boersma, Elizabeth B. Cerny-Chipman, Kurt E. Ingeman, Tye L. Kindinger, Amy J. Lindsley, Jake R. Nelson, Jeffrey J. Reimer, Jennifer C. Rowe, Chenchen Shen, Kevin A. Thompson, Selina S. Heppell
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0142031

Urbanization Increases Pathogen Pressure on Feral and Managed Honey Bees
Cited by: 61
Author(s): Elsa Youngsteadt, R. Holden Appler, Margarita M. López‐Uribe, David R. Tarpy, Steven D. Frank
Software Mentions: 1
Published: almost 11 years ago

10.1038/s41598-020-70695-7

Responses of active soil microorganisms facing to a soil biostimulant input compared to plant legacy effects
Cited by: 20
Author(s): Eve Hellequin, Cécile Monard, Marion Chorin, Nathalie Le Bris, Virginie Daburon, Olivier Klarzynski, Françoise Binet
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0104439

Trait-Specific Responses of Wild Bee Communities to Landscape Composition, Configuration and Local Factors
Cited by: 86
Author(s): Sebastian Hopfenmüller, Ingolf Steffan‐Dewenter, Andrea Holzschuh
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0226545

The microbiota composition of the offspring of patients with gestational diabetes mellitus (GDM)
Cited by: 39
Author(s): Valentina Ponzo, Ilario Ferrocino, Adriana Zarovska, Maria Bernadette Amenta, Filomena Leone, C Monzeglio, Rosalba Rosato, Marianna Pellegrini, Roberto Gambino, Maurizio Cassader, Ezio Ghigo, Luca Simone Cocolin, Simona Bo
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0172160

The role of dispersal mode and habitat specialization for metacommunity structure of shallow beach invertebrates
Cited by: 19
Author(s): Iván F. Rodil, Paloma Lucena-Moya, Henri Jokinen, Victoria Marja Sofia Ollus, Håkan Wennhage, Anna Villnäs, Alf Norkko
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0157505

Large-Scale Monitoring of Plants through Environmental DNA Metabarcoding of Soil: Recovery, Resolution, and Annotation of Four DNA Markers
Cited by: 105
Author(s): Nicole A Fahner, Shadi Shokralla, Donald J. Baird, Mehrdad Hajibabaei
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0063375

Ecological Drivers of Biogeographic Patterns of Soil Archaeal Community
Cited by: 23
Author(s): Yuqi Zheng, Peng Cao, Bojie Fu, Jane Hughes, Ji‐Zheng He
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0139371

The Impact of Conservation Management on the Community Composition of Multiple Organism Groups in Eutrophic Interconnected Man-Made Ponds
Cited by: 9
Author(s): Pieter Lemmens, Joachim Mergeay, Jeroen Van Wichelen, Luc De Meester, Steven Declerck
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0166669

Vertical Structure of Phyllosphere Fungal Communities in a Tropical Forest in Thailand Uncovered by High-Throughput Sequencing
Cited by: 23
Author(s): Ayako Izuno, Mamoru Kanzaki, Taksin Artchawakom, Chongrak Wachrinrat, Yuji Isagi
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0211209

Characterization of bacterioplankton communities from a hatchery recirculating aquaculture system (RAS) for juvenile sole (Solea senegalensis) production
Cited by: 15
Author(s): Letícia N. Duarte, Francisco J. R. C. Coelho, Vanessa Oliveira, Daniel F. R. Cleary, Patrícia Martins, Newton C. M. Gomes
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0066184

Variations in Soil Microbial Communities and Residues Along an Altitude Gradient on the Northern Slope of Changbai Mountain, China
Cited by: 67
Author(s): Bin Zhang, Chao Liang, Hongbo He, Xudong Zhang
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0093422

Microbial Community Functional Structures in Wastewater Treatment Plants as Characterized by GeoChip
Cited by: 40
Author(s): Xiaohui Wang, Yu Xia, Xianghua Wen, Yunfeng Yang, Jizhong Zhou
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0037679

Genetic Variation in Functional Traits Influences Arthropod Community Composition in Aspen (Populus tremula L.)
Cited by: 69
Author(s): Kathryn M. Robinson, Pär K. Ingvarsson, Stefan Jansson, Benedicte Riber Albrectsen
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2164-15-753

Functional gene arrays-based analysis of fecal microbiomes in patients with liver cirrhosis
Cited by: 33
Author(s): Yanfei Chen, Nan Qin, Jing Guo, Guirong Qian, Daiqiong Fang, Ding Shi, Min Xu, Fan Yang, Zhili He, Joy D. Van Nostrand, Tong Yuan, Ye Deng, Jizhong Zhou, Lanjuan Li
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0062026

Impact of Oral Typhoid Vaccination on the Human Gut Microbiota and Correlations with S. Typhi-Specific Immunological Responses
Cited by: 78
Author(s): Emiley A. Eloe‐Fadrosh, Monica A. McArthur, Anna M. Seekatz, Elliott F. Drábek, David A. Rasko, Marcelo B. Sztein, Claire M. Fraser
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0240264

Stimbiotic supplementation improved performance and reduced inflammatory response via stimulating fiber fermenting microbiome in weaner pigs housed in a poor sanitary environment and fed an antibiotic-free low zinc oxide diet
Cited by: 26
Author(s): Hyun Min Cho, Gemma González-Ortiz, Diego Melo-Durán, Jung Min Heo, Gustavo Cordero, M.R. Bedford, Jae-Cheol Kim
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12864-016-2700-8

Piglet nasal microbiota at weaning may influence the development of Glässer’s disease during the rearing period
Cited by: 50
Author(s): Florencia Correa‐Fiz, Lorenzo Fraile, Virginia Aragón
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0193354

Cryptic invasion of a parasitic copepod: Compromised identification when morphologically similar invaders co-occur in invaded ecosystems
Cited by: 7
Author(s): M. Anouk Goedknegt, David W. Thieltges, Jaap van der Meer, K. Mathias Wegner, Pieternella C. Luttikhuizen
Software Mentions: 1
Published: over 8 years ago

10.3390/cancers13163999

Gut Microbiota Dynamics during Chemotherapy in Epithelial Ovarian Cancer Patients Are Related to Therapeutic Outcome
Cited by: 17
Author(s): Federica D’Amico, Anna Myriam Perrone, Simone Rampelli, Sara Coluccelli, Monica Barone, Gloria Ravegnini, Marco Fabbrini, Patrizia Brigidi, Pierandrea De Iaco, Silvia Turroni
Software Mentions: 1
Published: about 5 years ago