Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: vegan

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/vegan

Community Ecology Package
87 versions
Latest release: about 2 years ago
202 dependent packages
91,351 downloads last month

Papers Mentioning vegan 6,903

10.1371/journal.pone.0125550
Contrasting Diversity and Host Association of Ectomycorrhizal Basidiomycetes versus Root-Associated Ascomycetes in a Dipterocarp Rainforest
Cited by: 21
Author(s): Hirotoshi Sato, Akifumi S. Tanabe, Hirokazu Toju
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0053285
Trustworthy-Looking Face Meets Brown Eyes
Cited by: 62
Author(s): Karel Kleisner, Lenka Příplatová, Peter Fröst, Jaroslav Flegr
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0103859
Responses of Soil Microbial Communities to Experimental Warming in Alpine Grasslands on the Qinghai-Tibet Plateau
Cited by: 33
Author(s): Bin Zhang, Shengyun Chen, Xingyuan He, Wenjie Liu, Qian Zhao, Lin Zhao, Chunjie Tian
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0140657
Methane Exchange in a Coastal Fen in the First Year after Flooding - A Systems Shift
Cited by: 41
Author(s): Juliane Hahn, Stefan Köhler, Stephan Glatzel, Gerald Jurasinski
Software Mentions: 1
Published: about 9 years ago
10.1038/s41598-021-89448-1
Total nitrogen is the main soil property associated with soil fungal community in karst rocky desertification regions in southwest China
Cited by: 6
Author(s): Defeng Qi, Xuwen Wieneke, Peipei Xue, Ling He, Udaya DeSilva
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0082433
Succession of Ephemeral Secondary Forests and Their Limited Role for the Conservation of Floristic Diversity in a Human-Modified Tropical Landscape
Cited by: 94
Author(s): Michiel van Breugel, Jefferson S. Hall, Dylan Craven, Mario Bailón, Andrés Hernández, Michele Abbene, Paulo van Breugel
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0173369
Dietary diversity, feeding selectivity, and responses to fruit scarcity of two sympatric Bornean primates (Hylobates albibarbis and Presbytis rubicunda rubida)
Cited by: 15
Author(s): Dena J. Clink, Christopher Dillis, Katie L. Feilen, Lydia Beaudrot, Andrew J. Marshall
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0253233
Spatial-temporal dynamics and influencing factors of archaeal communities in the sediments of Lancang River cascade reservoirs (LRCR), China
Cited by: 2
Author(s): Bo Yuan, Wenbin Wu, Mengjing Guo, Xiaode Zhou, Shuguang Xie
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0219166
Effects of root and leaf litter identity and diversity on oribatid mite abundance, species richness and community composition
Cited by: 9
Author(s): Christian Bluhm, Olaf Butenschoen, Mark Maraun, Stefan Scheu
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0005746
Discrepancy between Cranial and DNA Data of Early Americans: Implications for American Peopling
Cited by: 56
Author(s): S. Iván Pérez, Valeria Bernal, Paula N. González, Marina Laura Sardi, Gustavo G. Politis
Software Mentions: 1
Published: over 15 years ago
10.1371/journal.pone.0239736
Bias of marker genes in PCR of anammox bacteria in natural habitats
Cited by: 2
Author(s): Cai Min, Fei Ye, Jiapeng Wu, Qihang Wu, Yu Wang, Yiguo Hong
Software Mentions: 1
Published: about 4 years ago
10.1038/s41598-021-91195-2
Lung microbiome alterations in NSCLC patients
Cited by: 21
Author(s): Liping Zheng, Ruizheng Sun, Yinghong Zhu, Zheng Li, Xiaoling She, Xingxing Jian, Fenglei Yu, Xueyu Deng, Buqing Sai, Lujuan Wang, Wen Zhou, Minghua Wu, Guiyuan Li, Jingqun Tang, Wei Jia, Juanjuan Xiang
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0084761
Microbial Functional Potential and Community Composition in Permafrost-Affected Soils of the NW Canadian Arctic
Cited by: 74
Author(s): Béatrice A. Frank-Fahle, Étienne Yergeau, Charles W. Greer, Hugues Lantuit, Dirk Wagner
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0208493
Belowground fungal community diversity and composition associated with Norway spruce along an altitudinal gradient
Cited by: 18
Author(s): Max Emil Schön, Kay Nieselt, Sigisfredo Garnica
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0141087
Impact of Water Chemistry, Pipe Material and Stagnation on the Building Plumbing Microbiome
Cited by: 105
Author(s): Peng Ji, Jeffrey Parks, Marc Edwards, Amy Pruden
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0044203
Soil Fertilization Leads to a Decline in Between-Samples Variability of Microbial Community δ13C Profiles in a Grassland Fertilization Experiment
Cited by: 7
Author(s): Stavros D. Veresoglou, Barry Thornton, George Menexes, Andreas P. Mamolos, D. S. Veresoglou
Software Mentions: 1
Published: about 12 years ago
10.1038/s41598-021-91917-6
Yearly changes in the composition of gut microbiota in the elderly, and the effect of lactobacilli intake on these changes
Cited by: 12
Author(s): Ryuta Amamoto, Kazuhito Shimamoto, Sung Jin Park, Hoshitaka Matsumoto, Kensuke Shimizu, Miyuki Katto, Hirokazu Tsuji, Shigeo Matsubara, Roy J. Shephard, Yukitoshi Aoyagi
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0198848
Seasonal variations in diet composition, diet breadth and dietary overlap between three commercially important fish species within a flood-pulse system: The Tonle Sap Lake (Cambodia)
Cited by: 16
Author(s): Heng Kong, Mathieu Chevalier, Sovan Lek, Pascal Laffaille
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0028654
Changes in Human Fecal Microbiota Due to Chemotherapy Analyzed by TaqMan-PCR, 454 Sequencing and PCR-DGGE Fingerprinting
Cited by: 161
Author(s): Jutta Zwielehner, Cornelia Laßl, Berit Hippe, Angelika Pointner, Olivier J. Switzeny, Marlene Remely, Kitzweger Elvira, Ruckser Reinhard, Alexander G. Haslberger
Software Mentions: 1
Published: almost 13 years ago
10.1371/journal.pone.0117853
Disentangling the Diversity of Arboreal Ant Communities in Tropical Forest Trees
Cited by: 42
Author(s): Petr Klimeš, Pavel Fibich, Cliffson Idigel, Maling Rimandai
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0090510
Intercropping with Shrub Species That Display a ‘Steady-State’ Flowering Phenology as a Strategy for Biodiversity Conservation in Tropical Agroecosystems
Cited by: 3
Author(s): Valerie E. Peters
Software Mentions: 1
Published: over 10 years ago
10.1155/2016/8232135
The Vertical Distribution of Sediment Archaeal Community in the “Black Bloom” Disturbing Zhushan Bay of Lake Taihu
Cited by: 29
Author(s): Xianfang Fan, Peng Xing
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0239900
Population structure analysis and identification of genomic regions under selection associated with low-nitrogen tolerance in tropical maize lines
Cited by: 3
Author(s): Gustavo César Sant’Ana, Fernando Garcia Espolador, Ítalo Stefanine Correia Granato, Leandro Freitas Mendonça, Roberto Fritsche‐Neto, Aluízio Borém
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pone.0052967
Tropical Plant–Herbivore Networks: Reconstructing Species Interactions Using DNA Barcodes
Cited by: 134
Author(s): Carlos García‐Robledo, David L. Erickson, C. L. Staines, Terry L. Erwin, W. John Kress
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0164108
Mycorrhizal Fungal Diversity and Community Composition in Two Closely Related Platanthera (Orchidaceae) Species
Cited by: 25
Author(s): Fabiana Esposito, Hans Jacquemyn, Michael Waud, Daniel Tyteca
Software Mentions: 1
Published: about 8 years ago
10.1155/2020/8888615
Response and Adaptation of Microbial Community in a CANON Reactor Exposed to an Extreme Alkaline Shock
Cited by: 8
Author(s): Ruili Yang, Wenlong Mao, Xiaojun Wang, Zhaoji Zhang, Jianrong Wu, Shaohua Chen
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0162098
Temperature Regimes Impact Coral Assemblages along Environmental Gradients on Lagoonal Reefs in Belize
Cited by: 23
Author(s): Justin H. Baumann, Joseph E. Townsend, Travis A. Courtney, Hannah E. Aichelman, Sarah W. Davies, Fernando P. Lima, Karl D. Castillo
Software Mentions: 1
Published: about 8 years ago
10.1155/2016/3401272
Comparative Analysis of Methanogenic Communities in Different Laboratory-Scale Anaerobic Digesters
Cited by: 45
Author(s): Ayrat M. Ziganshin, Elvira E. Ziganshina, Sabine Kleinsteuber, Marcell Nikolausz
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0168206
Structural Changes in Molluscan Community over a 15-Year Period before and after the 2011 Great East Japan Earthquake and Subsequent Tsunami around Matsushima Bay, Miyagi Prefecture, Northeastern Japan
Cited by: 10
Author(s): Shinichi Sato, Tomoki Chiba
Software Mentions: 1
Published: almost 8 years ago
10.1007/s10453-015-9411-5
A 10-year study of Alternaria and Cladosporium in two Polish cities (Szczecin and Cracow) and relationship with the meteorological parameters
Cited by: 23
Author(s): Agnieszka Grinn‐Gofroń, Agnieszka Strzelczak, Danuta Stępalska, Dorota Myszkowska
Software Mentions: 1
Published: about 9 years ago
10.1186/s13568-019-0800-y
Variations in phyllosphere microbial community along with the development of angular leaf-spot of cucumber
Cited by: 31
Author(s): Luyun Luo, Zhuo Zhang, Pei Wang, Yongqin Han, Decai Jin, Pin Su, Xinqiu Tan, Deyong Zhang, Hamid Muhammad-Rizwan, Xiangyang Lu, Yong Liu
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0136793
Invertebrate Metacommunity Structure and Dynamics in an Andean Glacial Stream Network Facing Climate Change
Cited by: 65
Author(s): Sophie Cauvy‐Fraunié, Rodrigo Espinosa, Patricio Andino, Dean Jacobsen, Olivier Dangles
Software Mentions: 1
Published: about 9 years ago
10.1007/s00253-014-5868-3
Investigating bacterial populations in styrene-degrading biofilters by 16S rDNA tag pyrosequencing
Cited by: 23
Author(s): Kevin J. Portune, M. Pérez, Francisco Javier Álvarez‐Hornos, Carmen Gabaldón
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0058269
Diversity and Abundance of the Bacterial Community of the Red Macroalga Porphyra umbilicalis: Did Bacterial Farmers Produce Macroalgae?
Cited by: 93
Author(s): Lilibeth Miranda, Keith W. Hutchison, Arthur R. Grossman, Susan H. Brawley
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0211272
Can mowing restore boreal rich-fen vegetation in the face of climate change?
Cited by: 11
Author(s): Louise Ross, James D. M. Speed, Dag‐Inge Øien, Mateusz Grygoruk, Kristian Hassel, Anders Lyngstad, Asbjørn Moen
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0196171
Fecal microbiome of periparturient dairy cattle and associations with the onset of Salmonella shedding
Cited by: 13
Author(s): Lohendy Muñoz-Vargas, Stephen O. Opiyo, R. Digianantonio, Michele L. Williams, Asela J. Wijeratne, Gregory Habing
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0026284
Inflammatory Bowel Diseases Phenotype, C. difficile and NOD2 Genotype Are Associated with Shifts in Human Ileum Associated Microbial Composition
Cited by: 207
Author(s): Ellen Li, Christina M. Hamm, Ajay Gulati, R. Balfour Sartor, Hongyan Chen, Xiao Wu, Tianyi Zhang, F. James Rohlf, Wei Zhu, C. Charles Gu, Charles E. Robertson, Norman R. Pace, Edgar C. Boedeker, Noam Harpaz, Jeffrey Yuan, George M. Weinstock, Erica Sodergren, Daniel N. Frank
Software Mentions: 1
Published: over 12 years ago
10.1038/s41598-021-94557-y
Correlations between environmental salinity levels, blood biochemistry parameters, and steroid hormones in wild juvenile American alligators (Alligator mississippiensis)
Cited by: 1
Author(s): Patricia C. Faulkner, Ruth M. Elsey, David Hala, Lene H. Petersen
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0147100
Impact of Phanerochaete chrysosporium on the Functional Diversity of Bacterial Communities Associated with Decaying Wood
Cited by: 31
Author(s): Vincent Hervé, Elodie Ketter, Jean-Claude Pierrat, Éric Gelhaye, Pascale Frey‐Klett
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0159035
Temporal Decay in Timber Species Composition and Value in Amazonian Logging Concessions
Cited by: 45
Author(s): Vanessa Richardson, Carlos A. Peres
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0007071
Disturbance Alters the Phylogenetic Composition and Structure of Plant Communities in an Old Field System
Cited by: 88
Author(s): Russell Dinnage
Software Mentions: 1
Published: about 15 years ago
10.1038/s41598-021-95905-8
High taxonomic resolution surveys and trait-based analyses reveal multiple benthic regimes in North Sulawesi (Indonesia)
Cited by: 1
Author(s): Miriam Reverter, Matthew Jackson, Sven Rohde, Mareen Moeller, Robert Bara, Markus T. Lasut, Marco Segre Reinach, Peter J. Schupp
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0023445
Tree Resin Composition, Collection Behavior and Selective Filters Shape Chemical Profiles of Tropical Bees (Apidae: Meliponini)
Cited by: 35
Author(s): Sara D. Leonhardt, Thomas Schmitt, Nico Blüthgen
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0044578
At Limits of Life: Multidisciplinary Insights Reveal Environmental Constraints on Biotic Diversity in Continental Antarctica
Cited by: 51
Author(s): Catarina Magalhães, Mark I. Stevens, S. Craig Cary, Becky A. Ball, B. C. Storey, Diana H. Wall, Roman Türk, Ulrike Ruprecht
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0094643
Importance of Saprotrophic Freshwater Fungi for Pollen Degradation
Cited by: 88
Author(s): Christian Wurzbacher, Stefan Rösel, Anna Rychła, Hans‐Peter Grossart
Software Mentions: 1
Published: over 10 years ago
10.7717/peerj.8307
Morphological variation of leaf traits in the<i>Ternstroemia lineata</i>species complex (Ericales: Penthaphylacaceae) in response to geographic and climatic variation
Cited by: 17
Author(s): Othón Alcántara-Ayala, Ken Oyama, César A. Ríos-Muñoz, Gerardo Rivas, Santiago Ramírez‐Barahona, Isolda Luna‐Vega
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-021-96641-9
Seasonal and annual changes in the microbial communities of Ofunato Bay, Japan, based on metagenomics
Cited by: 2
Author(s): Atsushi Kobiyama, Jonaira Rashid, Md. Shaheed Reza, Yuichi Ikeda, Yuma Yamada, Toshiaki Kudo, Naoki Mizusawa, Saki Yanagisawa, Daisuke Ikeda, Shigeru Satō, Toru Ogata, Kazuho Ikeo, Shinnosuke Kaga, Shiho Watanabe, Kimiaki Naiki, Yoshimasa Kaga, Satoshi Segawa, Yumiko Tada, Tatsuya Musashi, Katsuhiko Mineta, Takashi Gojobori, Shugo Watabe
Software Mentions: 1
Published: about 3 years ago
10.7717/peerj.2226
Rapid response of arbuscular mycorrhizal fungal communities to short-term fertilization in an alpine grassland on the Qinghai-Tibet Plateau
Cited by: 26
Author(s): Xingjia Xiang, Sean M. Gibbons, Jin‐Sheng He, Chao Wang, Dan He, Qian Li, Yingying Ni, Haiyan Chu
Software Mentions: 1
Published: over 8 years ago
10.1128/AEM.01049-17
Carbon Amendments Alter Microbial Community Structure and Net Mercury Methylation Potential in Sediments
Cited by: 35
Author(s): Geoff A. Christensen, Anil Somenahally, James G. Moberly, Christine Miller, Andrew J. King, Cynthia C. Gilmour, Steven D. Brown, Mircea Podar, Craig C. Brandt, Scott C. Brooks, Anthony V. Palumbo, Judy D. Wall, Dwayne A. Elias
Software Mentions: 1
Published: almost 7 years ago
10.7717/peerj.374
How long is enough to detect terrestrial animals? Estimating the minimum trapping effort on camera traps
Cited by: 58
Author(s): Xingfeng Si, Roland Kays, Ping Ding
Software Mentions: 1
Published: over 10 years ago
10.7717/peerj.9341
Double lives: transfer of fungal endophytes from leaves to woody substrates
Cited by: 25
Author(s): Aaron A. Nelson, Roo Vandegrift, George C. Carroll, Brad A. Roy
Software Mentions: 1
Published: about 4 years ago
10.7717/peerj.4559
Pumpkin powdery mildew disease severity influences the fungal diversity of the phyllosphere
Cited by: 26
Author(s): Zhuo Zhang, Luyun Luo, Xinqiu Tan, Xiao Kong, Jianguo Yang, Duanhua Wang, Deyong Zhang, Decai Jin, Yong Liu
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-021-97173-y
Co-occurrence networks reveal the central role of temperature in structuring the plankton community of the Thau Lagoon
Cited by: 10
Author(s): Thomas Trombetta, Francesca Vidussi, Cécile Roques, Sébastien Mas, Marco Scotti, Behzad Mostajir
Software Mentions: 1
Published: about 3 years ago
10.7717/peerj.9122
Analyzing bacterial community in pit mud of Yibin Baijiu in China using high throughput sequencing
Cited by: 15
Author(s): Li Chen, Yuzhu Li, Lan Jin, Li He, Xiaolin Ao, Shuliang Liu, Yong Yang, Aiping Liu, Shujuan Chen, Likou Zou
Software Mentions: 1
Published: over 4 years ago
10.7717/peerj.573
Phylogenetic congruence of lichenised fungi and algae is affected by spatial scale and taxonomic diversity
Cited by: 12
Author(s): Hannah L. Buckley, Arash Rafat, Johnathon Ridden, Robert Cruickshank, Hayley J. Ridgway, Adrian M. Paterson
Software Mentions: 1
Published: about 10 years ago
10.7717/peerj.9976
Radiolarian assemblages in the shelf area of the East China Sea and Yellow Sea and their ecological indication of the Kuroshio Current derivative branches
Cited by: 4
Author(s): Hanxue Qu, Yong Xu, Jinbao Wang, Xinzheng Li
Software Mentions: 1
Published: about 4 years ago
10.7717/peerj.10553
Effect of incubation temperature and substrate moisture on embryonic development, hatchling phenotypes and post-hatching growth in the Reeves’ Turtle, <i>Mauremys reevesii</i>
Cited by: 2
Author(s): Yufeng Wei, Yangchun Gao, Dainan Cao, Yan Ge, Haitao Shi, Shiping Gong
Software Mentions: 1
Published: almost 4 years ago
10.7717/peerj.10430
Effect of dietary oil from<i>Camelina sativa</i>on the growth performance, fillet fatty acid profile and gut microbiome of gilthead Sea bream (<i>Sparus aurata</i>)
Cited by: 14
Author(s): David Huyben, Simona Rimoldi, Chiara Ceccotti, Daniel Montero, Mónica B. Betancor, Federica Iannini, Genciana Terova
Software Mentions: 1
Published: almost 4 years ago
10.7717/peerj.7865
Bees may drive the reproduction of four sympatric cacti in a vanishing coastal mediterranean-type ecosystem
Cited by: 3
Author(s): Pablo Guerrero, Claudia A. Antinao, Beatriz Vergara-Meriño, Cristian A. Villagra, Gastón O. Carvallo
Software Mentions: 1
Published: about 5 years ago
10.7717/peerj.10271
The invasive red-eared slider turtle is more successful than the native Chinese three-keeled pond turtle: evidence from the gut microbiota
Cited by: 9
Author(s): Yan‐Fu Qu, Yanqing Wu, Yu-Tian Zhao, Lin Li, Yuguang Du, Peng Li, Li Hong, Xiang Ji
Software Mentions: 1
Published: about 4 years ago
10.7717/peerj.4078
Ordinary kriging vs inverse distance weighting: spatial interpolation of the sessile community of Madagascar reef, Gulf of Mexico
Cited by: 35
Author(s): Salvador Zarco‐Perello, Nuno Simões
Software Mentions: 1
Published: almost 7 years ago
10.7717/peerj.6014
Decline in coral cover and flattening of the reefs around Mauritius (1998–2010)
Cited by: 8
Author(s): Jennifer Elliott, Mark Patterson, Caroline G. Staub, Meera Koonjul, Stephen Elliott
Software Mentions: 1
Published: almost 6 years ago
10.7717/peerj.4020
Foliar microbiome transplants confer disease resistance in a critically-endangered plant
Cited by: 43
Author(s): Geoffrey Zahn, Anthony S. Amend
Software Mentions: 1
Published: about 7 years ago
10.7717/peerj.4623
Effects of fertilizations on soil bacteria and fungi communities in a degraded arid steppe revealed by high through-put sequencing
Cited by: 23
Author(s): Lei Yao, Dangjun Wang, Lin Woo Kang, Dengke Wang, Yong Zhang, Xiangyang Hou, Yanjun Guo
Software Mentions: 1
Published: over 6 years ago
10.1128/AEM.01037-18
Overlapping Community Compositions of Gut and Fecal Microbiomes in Lab-Reared and Field-Collected German Cockroaches
Cited by: 53
Author(s): Madhavi L. Kakumanu, Julia M. Maritz, Jane M. Carlton, Coby Schal
Software Mentions: 1
Published: about 6 years ago
10.1128/AEM.00559-16
Population- and Individual-Level Dynamics of the Intestinal Microbiota of a Small Primate
Cited by: 38
Author(s): Tuomas Aivelo, Juha Laakkonen, Jukka Jernvall
Software Mentions: 1
Published: over 8 years ago
10.7717/peerj.5906
Microbiome differences between river-dwelling and cave-adapted populations of the fish<i>Astyanax mexicanus</i>(De Filippi, 1853)
Cited by: 23
Author(s): Claudia Patricia Ornelas‐García, Silvia Pajares, Víctor M. Sosa-Jiménez, Sylvie Rétaux, Ramses Alejandro Miranda-Gamboa
Software Mentions: 1
Published: about 6 years ago
10.7717/peerj.5628
Different environmental gradients affect different measures of snake β-diversity in the Amazon rainforests
Cited by: 13
Author(s): Rafael de Fraga, Miquéias Ferrão, Adam J. Stow, William E. Magnusson, Albertina P. Lima
Software Mentions: 1
Published: about 6 years ago
10.7717/peerj.9612
Bacterial community characteristics and enzyme activities in <i>Imperata cylindrica</i> litter as phytoremediation progresses in a copper tailings dam
Cited by: 2
Author(s): Tong Jia, Tingyan Guo, Bo Chai
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-021-98876-y
Multidisciplinary analysis of Italian Alpine wildflower honey reveals criticalities, diversity and value
Cited by: 12
Author(s): Valeria Leoni, Luca Giupponi, Radmila Pavlović, Carla Gianoncelli, Francisco Miguel Cecati, Elia Ranzato, Simona Martinotti, Davide Pedrali, Annamaria Giorgi, Sara Panseri
Software Mentions: 1
Published: about 3 years ago
10.7717/peerj.7127
Dynamics of soil properties and fungal community structure in continuous-cropped alfalfa fields in Northeast China
Cited by: 16
Author(s): Qin Yao, Yanxia Xu, Xuefeng Li, Junjie Liu, X. Huang, Yang WeiGuang, Zhao Yang, Lan Lan, Jingming Zhou
Software Mentions: 1
Published: over 5 years ago
10.7717/peerj.3182
The importance of scale-dependent ravine characteristics on breeding-site selection by the Burrowing Parrot, <i>Cyanoliseus patagonus</i>
Cited by: 2
Author(s): Myriam Ramirez-Herranz, Rodrigo S. Ríos, Renzo Vargas-Rodríguez, Jose-Enrique Novoa-Jerez, Francisco A. Squeo
Software Mentions: 1
Published: over 7 years ago
10.7717/peerj.10902
Soil properties and root traits jointly shape fine-scale spatial patterns of bacterial community and metabolic functions within a Korean pine forest
Cited by: 3
Author(s): Jun Teng, Jing Tian, Guirui Yu, Yakov Kuzyakov
Software Mentions: 1
Published: over 3 years ago
10.7717/peerj.5252
Best in the company of nearby males: female success in the threatened cycad,<i>Zamia portoricensis</i>
Cited by: 6
Author(s): Julio C. Lazcano-Lara, James D. Ackerman
Software Mentions: 1
Published: over 6 years ago
10.7717/peerj.8695
Diversity of root-associated culturable fungi of <i>Cephalanthera rubra</i> (Orchidaceae) in relation to soil characteristics
Cited by: 11
Author(s): J. A. Bell, Kazutomo Yokoya, Jonathan P. Kendon, Viswambharan Sarasan
Software Mentions: 1
Published: over 4 years ago
10.7717/peerj.8905
Diversity of rhizosphere and endophytic fungi in <i>Atractylodes macrocephala</i> during continuous cropping
Cited by: 21
Author(s): Bo Zhu, Jianjun Wu, Qingyong Ji, Wu Wei, Shihui Dong, Jia-Yan Yu, Qiaoyan Zhang, Lu‐Ping Qin
Software Mentions: 1
Published: over 4 years ago
10.1128/AEM.02412-16
Influences of pH and Iron Concentration on the Salivary Microbiome in Individual Humans with and without Caries
Cited by: 28
Author(s): Jianye Zhou, Nan Jiang, Zhengzheng Wang, Longqing Li, Jumei Zhang, Rui Ma, Huan Nie, Zhiqiang Li
Software Mentions: 1
Published: almost 8 years ago
10.7717/peerj.2687
Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone
Cited by: 97
Author(s): Cristina N. Butterfield, Zhou Li, Peter F. Andeer, Susan E. Spaulding, Brian C. Thomas, Anil K. Singh, Robert L. Hettich, K. Blake Suttle, Alexander J. Probst, Susannah G. Tringe, Trent Northen, Chongle Pan, Jillian F. Banfield
Software Mentions: 1
Published: about 8 years ago
10.1128/AEM.01774-18
Methanogens and Iron-Reducing Bacteria: the Overlooked Members of Mercury-Methylating Microbial Communities in Boreal Lakes
Cited by: 44
Author(s): Andrea G. Bravo, Sari Peura, Moritz Buck, Omneya Ahmed, Alejandro Mateos‐Rivera, Sonia Herrero Ortega, Jeffra K. Schaefer, Sylvain Bouchet, Julie Tolu, Erik Björn, Stefan Bertilsson
Software Mentions: 1
Published: almost 6 years ago
10.1128/AEM.01083-18
Linking Uncultivated Microbial Populations and Benthic Carbon Turnover by Using Quantitative Stable Isotope Probing
Cited by: 36
Author(s): Oemer K. Coskun, Matthias Pichler, Sergio Vargas, Stuart Gilder, William D. Orsi
Software Mentions: 1
Published: about 6 years ago
10.1128/AEM.00342-19
Insights into the Phylogeny, Nodule Function, and Biogeographic Distribution of Microsymbionts Nodulating the Orphan Kersting’s Groundnut [ <i>Macrotyloma geocarpum</i> (Harms) Marechal &amp; Baudet] in African Soils
Cited by: 21
Author(s): Mustapha Mohammed, Sanjay K. Jaiswal, Felix D. Dakora
Software Mentions: 1
Published: over 5 years ago
10.1016/j.soilbio.2015.01.016
Microbial community composition shapes enzyme patterns in topsoil and subsoil horizons along a latitudinal transect in Western Siberia
Cited by: 92
Author(s): Jörg Schnecker, Birgit Wild, Mounir Takriti, Ricardo J. Eloy Alves, Norman Gentsch, Antje Gittel, Angelika Hofer, Karoline Klaus, Anna Knoltsch, Nikolay Lashchinskiy, Robert Mikutta, Andreas Richter
Software Mentions: 1
Published: over 9 years ago
10.7717/peerj.2174
Metabolomics of pulmonary exacerbations reveals the personalized nature of cystic fibrosis disease
Cited by: 44
Author(s): Robert A. Quinn, Yan Wei Lim, Tytus D. Mak, Katrine Whiteson, Mike Furlan, Douglas Conrad, Forest Rohwer, Pieter C. Dorrestein
Software Mentions: 1
Published: over 8 years ago
10.1016/j.still.2020.104754
Wheat growth responses to soil mechanical impedance are dependent on phosphorus supply
Cited by: 7
Author(s): Xin Wang, Jianbo Shen, Peter Hedden, Andrew L. Phillips, Stephen G. Thomas, Yaoxiang Ge, R. W. Ashton, W. R. Whalley
Software Mentions: 1
Published: almost 4 years ago
10.1016/j.syapm.2018.05.003
Identification and distribution of microsymbionts associated with soybean nodulation in Mozambican soils
Cited by: 18
Author(s): Cynthia Gyogluu, Sanjay K. Jaiswal, Stephen Kyei-Boahen, Felix D. Dakora
Software Mentions: 1
Published: about 6 years ago
10.1016/j.syapm.2019.02.004
Phylogeny and distribution of Bradyrhizobium symbionts nodulating cowpea (Vigna unguiculata L. Walp) and their association with the physicochemical properties of acidic African soils
Cited by: 16
Author(s): Doris K. Puozaa, Sanjay K. Jaiswal, Felix D. Dakora
Software Mentions: 1
Published: over 5 years ago
10.7717/peerj.9047
The chemistry and histology of sexually dimorphic mental glands in the freshwater turtle,<i>Mauremys leprosa</i>
Cited by: 1
Author(s): Alejandro Ibáñez, Albert Martı́nez Silvestre, Dagmara Podkowa, Aneta Woźniakiewicz, Michał Woźniakiewicz, Maciej Pabijan
Software Mentions: 1
Published: over 4 years ago
10.7717/peerj.8536
Short-term effects of thinning on the development and communities of understory vegetation of Chinese fir plantations in Southeastern China
Cited by: 10
Author(s): Xuelei Xu, Xinjie Wang, Huifen Yang, Ping Wang, Sajjad Saeed, Yong Sun
Software Mentions: 1
Published: almost 5 years ago
10.7717/peerj.3360
Storm effects on intertidal invertebrates: increased beta diversity of few individuals and species
Cited by: 43
Author(s): Guilherme Nascimento Corte, Thomas A. Schlacher, Hélio H. Checon, Carlos A. M. Barboza, Eduardo Siegle, Ross A. Coleman, A. Cecília Z. Amaral
Software Mentions: 1
Published: over 7 years ago
10.1093/aobpla/plv030
Soil microbial community variation correlates most strongly with plant species identity, followed by soil chemistry, spatial location and plant genus
Cited by: 133
Author(s): Jean H. Burns, Brian L. Anacker, Sharon Y. Strauss, David Burke
Software Mentions: 1
Published: over 9 years ago
10.1093/aobpla/plv110
Composition of fungal soil communities varies with plant abundance and geographic origin
Cited by: 12
Author(s): Vanessa Reininger, Laura B. Martínez‐García, Laura A. Sanderson, Pedro M. Antunes
Software Mentions: 1
Published: about 9 years ago
10.7717/peerj.6610
Associated bacteria of <i>Botryococcus braunii</i> (Chlorophyta)
Cited by: 7
Author(s): João Diogo Gouveia, Jie Lian, Georg Steinert, Hauke Smidt, Detmer Sipkema, René H. Wijffels, María J. Barbosa
Software Mentions: 1
Published: over 5 years ago
10.3390/nu13082837
Association of the Maternal Gut Microbiota/Metabolome with Cord Blood CCL17
Cited by: 2
Author(s): Hiromi Tanabe, Kenichi Sakurai, Yumiko Nakanishi, Tamotsu Kato, Yohei Kawasaki, Taiji Nakano, Fumiya Yamaide, Naoko Taguchi‐Atarashi, Yuki Shiko, Ikumi Takashima, Masahiro Watanabe, Satoru Ochiai, Hiroshi Ohno, Hiroshi Fukuoka, Naoki Shimojo, Chisato Mori
Software Mentions: 1
Published: over 3 years ago
10.3390/toxins9040120
Changes in the Fusarium Head Blight Complex of Malting Barley in a Three-Year Field Experiment in Italy
Cited by: 34
Author(s): Giovanni Beccari, Antonio Prodi, Francesco Tini, Umberto Bonciarelli, Andrea Onofri, Souheib Oueslati, Marwa Limayma, Lorenzo Covarelli
Software Mentions: 1
Published: over 7 years ago
10.3390/toxins9060179
Venom On-a-Chip: A Fast and Efficient Method for Comparative Venomics
Cited by: 16
Author(s): Giulia Zancolli, Libia Sanz, Juan J. Calvete, Wolfgang Wüster
Software Mentions: 1
Published: over 7 years ago
10.3390/pathogens6040054
Opportunistic Pathogens and Microbial Communities and Their Associations with Sediment Physical Parameters in Drinking Water Storage Tank Sediments
Cited by: 22
Author(s): Ke Qin, Ian Struewing, Jorge Santo Domingo, Darren A. Lytle, Jingrang Lu
Software Mentions: 1
Published: about 7 years ago
10.3390/nu10070907
Betaine Improves Intestinal Functions by Enhancing Digestive Enzymes, Ameliorating Intestinal Morphology, and Enriching Intestinal Microbiota in High-salt stressed Rats
Cited by: 34
Author(s): Haichao Wang, Sisi Li, Shan Fang, Xiaojing Yang, Jie Feng
Software Mentions: 1
Published: over 6 years ago
10.1186/s13071-016-1299-6
Culex pipiens and Culex restuans mosquitoes harbor distinct microbiota dominated by few bacterial taxa
Cited by: 75
Author(s): Ephantus J. Muturi, Chang‐Hyun Kim, Jeffrey J. Bara, Elizabeth M. Bach, Madhura H. Siddappaji
Software Mentions: 1
Published: almost 9 years ago
10.3390/toxins11110669
First Detection of Microcystin-LR in the Amazon River at the Drinking Water Treatment Plant of the Municipality of Macapá, Brazil
Cited by: 13
Author(s): Elane Domênica Cunha de Oliveira, Raquel Castelo-Branco, Luis Silva, Natalina Silva, Joana Azevedo, Vı́tor Vasconcelos, Sílvia Maria Mathes Faustino, Alan Cavalcanti da Cunha
Software Mentions: 1
Published: about 5 years ago
10.3390/toxins12030183
Effects of Microcystin-LR on Metabolic Functions and Structure Succession of Sediment Bacterial Community under Anaerobic Conditions
Cited by: 12
Author(s): Qin Ding, Kai-Yan Liu, Zhiquan Song, Rongli Sun, Juan Zhang, Lihong Yin, Yuepu Pu
Software Mentions: 1
Published: over 4 years ago