Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: vegan

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/vegan

Community Ecology Package
87 versions
Latest release: about 2 years ago
202 dependent packages
91,351 downloads last month

Papers Mentioning vegan 6,903

10.3389/fmicb.2016.00649
Co-occurrence Analysis of Microbial Taxa in the Atlantic Ocean Reveals High Connectivity in the Free-Living Bacterioplankton
Cited by: 105
Author(s): Mathias Milici, Zhi-Luo Deng, Jürgen Tomasch, Johan Decelle, Melissa L. Wos‐Oxley, Hui Wang, Ruy Jáuregui, Iris Plumeier, Helge-Ansgar Giebel, Thomas H. Badewien, Mascha Wurst, Dietmar H. Pieper, Meinhard Simon, Irene Wagner‐Döbler
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0042238
Drosophila Regulate Yeast Density and Increase Yeast Community Similarity in a Natural Substrate
Cited by: 112
Author(s): Judy A. Stamps, Louie H. Yang, Verónica L. Morales, Kyria Boundy‐Mills
Software Mentions: 1
Published: over 12 years ago
10.3389/fmicb.2014.00743
Benthic ammonia oxidizers differ in community structure and biogeochemical potential across a riverine delta
Cited by: 23
Author(s): Julian Damashek, Jay W. Smith, Annika C. Mosier, Christopher A. Francis
Software Mentions: 1
Published: almost 10 years ago
10.7717/peerj.1014
Influence of sediment characteristics on the composition of soft-sediment intertidal communities in the northern Gulf of Mexico
Cited by: 8
Author(s): Kyle E. Coblentz, Jessica R. Henkel, Bryan J. Sigel, Caz M. Taylor
Software Mentions: 1
Published: over 9 years ago
10.7717/peerj.3677
Comparison of chemical compounds associated with sclerites from healthy and diseased sea fan corals (<i>Gorgonia ventalina</i>)
Cited by: 3
Author(s): Carlos Toledo-Hernández, Claudia Patricia Ruiz-Diaz, Liz M. Díaz-Vázquez, Vanessa Santiago-Cárdenas, Derick N Rosario-Berrios, Derek M. García-Almedina, Loretta Roberson
Software Mentions: 1
Published: over 7 years ago
10.3389/fmicb.2016.00234
Distinct Spatial Patterns of SAR11, SAR86, and Actinobacteria Diversity along a Transect in the Ultra-oligotrophic South Pacific Ocean
Cited by: 35
Author(s): Nyree J. West, Cécile Lepère, Carmem-Lara de Oliveira Manes, Philippe Catala, David J. Scanlan, Philippe Lebaron
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-019-54467-6
Integrative analysis of the gut microbiota and metabolome in rats treated with rice straw biochar by 16S rRNA gene sequencing and LC/MS-based metabolomics
Cited by: 23
Author(s): Jiahong Han, Jun Meng, Shuya Chen, Chuang Li
Software Mentions: 1
Published: almost 5 years ago
10.3389/fmicb.2020.590877
Effect of Menopausal Hormone Therapy on the Vaginal Microbiota and Genitourinary Syndrome of Menopause in Chinese Menopausal Women
Cited by: 7
Author(s): Longlong Geng, Wenjun Huang, Shu‐Heng Jiang, Yiming Zheng, Yuxiao Zhou, Yang Zhou, Jingzhou Hu, Ping Li, Minfang Tao
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pone.0141510
The Paternal Landscape along the Bight of Benin – Testing Regional Representativeness of West-African Population Samples Using Y-Chromosomal Markers
Cited by: 8
Author(s): Maarten Larmuseau, Andrea Vessi, Mark A. Jobling, Anneleen Van Geystelen, Giuseppina Primativo, G. Biondi, Cristina Martínez-Labarga, Claudio Ottoni, Ronny Decorte, Olga Rickards
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0080955
Coastal Fish Assemblages Reflect Geological and Oceanographic Gradients Within An Australian Zootone
Cited by: 36
Author(s): Euan S. Harvey, Michael Cappo, Gary A. Kendrick, Dianne L. McLean
Software Mentions: 1
Published: about 11 years ago
10.1002/ece3.5774
Silhouette width using generalized mean—A flexible method for assessing clustering efficiency
Cited by: 48
Author(s): Attila Lengyel, Zoltán Botta‐Dukát
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-019-54452-z
Succession in arbuscular mycorrhizal fungi can be attributed to a chronosequence of Cunninghamia lanceolata
Cited by: 20
Author(s): Nini Lu, Xuelei Xu, Ping Wang, Peng Zhang, Baoming Ji, Xinjie Wang
Software Mentions: 1
Published: almost 5 years ago
10.3389/fmicb.2018.01390
Cultivation of Drought-Tolerant and Insect-Resistant Rice Affects Soil Bacterial, but Not Fungal, Abundances and Community Structures
Cited by: 23
Author(s): Peng Li, Shuifeng Ye, Hua Liu, Aihu Pan, Feng Ming, Xueming Tang
Software Mentions: 1
Published: over 6 years ago
10.3389/fmicb.2019.02654
Soil Nutrients Drive Function and Composition of phoC-Harboring Bacterial Community in Acidic Soils of Southern China
Cited by: 22
Author(s): Man Man Zheng, Chao Wang, Wen Xing Li, Wen Song, Ren Fang Shen
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0084761
Microbial Functional Potential and Community Composition in Permafrost-Affected Soils of the NW Canadian Arctic
Cited by: 74
Author(s): Béatrice A. Frank-Fahle, Étienne Yergeau, Charles W. Greer, Hugues Lantuit, Dirk Wagner
Software Mentions: 1
Published: almost 11 years ago
10.3389/fmicb.2018.02344
Response of Gut Microbiota to Dietary Fiber and Metabolic Interaction With SCFAs in Piglets
Cited by: 58
Author(s): Boshuai Liu, Wenjing Wang, Xiaoyan Zhu, Xiao Sun, Junnan Xiao, Defeng Li, Yalei Cui, Chengzhang Wang, Shi Ya
Software Mentions: 1
Published: about 6 years ago
10.3389/fmicb.2019.02209
Variation in Actinobacterial Community Composition and Potential Function in Different Soil Ecosystems Belonging to the Arid Heihe River Basin of Northwest China
Cited by: 75
Author(s): Binglin Zhang, Xiukun Wu, Xisheng Tai, Likun Sun, Minghui Wu, Wei Zhang, Ximing Chen, Gaosen Zhang, Tuo Chen, Guangxiu Lu, Paul Dyson
Software Mentions: 1
Published: about 5 years ago
10.3389/fmicb.2018.01830
Comparative Analyses of the Digestive Tract Microbiota of New Guinean Passerine Birds
Cited by: 36
Author(s): Kasun H. Bodawatta, Kateřina Sam, Knud A. Jønsson, Michael Poulsen
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0103423
Ecological Consequences of Shifting the Timing of Burning Tallgrass Prairie
Cited by: 30
Author(s): E. Gene Towne, Joseph M. Craine
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0254998
Large-scale survey of prion protein genetic variability in scrapie disease-free goats from the United States
Cited by: 1
Author(s): Mohamed Zeineldin, Kimberly A Lehman, N.J. Urie, Matthew A. Branan, Alyson M. Wiedenheft, Katherine L. Marshall, Suelee Robbe‐Austerman, Tyler C. Thacker
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0208493
Belowground fungal community diversity and composition associated with Norway spruce along an altitudinal gradient
Cited by: 18
Author(s): Max Emil Schön, Kay Nieselt, Sigisfredo Garnica
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0141087
Impact of Water Chemistry, Pipe Material and Stagnation on the Building Plumbing Microbiome
Cited by: 105
Author(s): Peng Ji, Jeffrey Parks, Marc Edwards, Amy Pruden
Software Mentions: 1
Published: about 9 years ago
10.1038/sdata.2017.152
Gut bacterial communities of diarrheic patients with indications of Clostridioides difficile infection
Cited by: 13
Author(s): Dominik Schneider, Andrea Thürmer, Kathleen Gollnow, Raimond Lugert, Katrin Gunka, Uwe Groß, Rolf Daniel
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0044203
Soil Fertilization Leads to a Decline in Between-Samples Variability of Microbial Community δ13C Profiles in a Grassland Fertilization Experiment
Cited by: 7
Author(s): Stavros D. Veresoglou, Barry Thornton, George Menexes, Andreas P. Mamolos, D. S. Veresoglou
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0198848
Seasonal variations in diet composition, diet breadth and dietary overlap between three commercially important fish species within a flood-pulse system: The Tonle Sap Lake (Cambodia)
Cited by: 16
Author(s): Heng Kong, Mathieu Chevalier, Sovan Lek, Pascal Laffaille
Software Mentions: 1
Published: over 6 years ago
10.1002/ece3.3411
Tree diversity drives diversity of arthropod herbivores, but successional stage mediates detritivores
Cited by: 23
Author(s): Michael J. O’Brien, Matteo Brezzi, Andreas Schuldt, Jia-Yong Zhang, Keping Ma, Bernhard Schmid, Pascal A. Niklaus
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0218999
A20 in dendritic cells restrains intestinal anti-bacterial peptide expression and preserves commensal homeostasis
Cited by: 6
Author(s): Alice Talpin, Michael G. Kattah, Rommel Advincula, Douglas Fadrosh, Kole Lynch, Brandon LaMere, Kei E. Fujimura, Nabeetha A. Nagalingam, Barbara A. Malynn, Susan V. Lynch, Averil Ma
Software Mentions: 1
Published: over 5 years ago
10.1002/ece3.5475
Regional patterns of genetic structure and environmental differentiation in willow populations (<i>Salix humboldtiana</i>Willd.) from Central Mexico
Cited by: 15
Author(s): Mariana S. Hernández‐Leal, Marco Suárez‐Atilano, Daniel Piñero, Antonio González‐Rodríguez
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2021.678290
Generalist Taxa Shape Fungal Community Structure in Cropping Ecosystems
Cited by: 3
Author(s): Juntao Wang, Jin-Hui Shen, Limei Zhang, Brajesh K. Singh, Manuel Delgado‐Baquerizo, Hang‐Wei Hu, Lili Han, Wenxue Wei, Yunting Fang, Ji‐Zheng He
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0221998
Ectomycorrhizal fungal communities of secondary tropical forests dominated by Tristaniopsis in Bangka Island, Indonesia
Cited by: 5
Author(s): Helbert, Maman Turjaman, Kazuhide Nara
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0028654
Changes in Human Fecal Microbiota Due to Chemotherapy Analyzed by TaqMan-PCR, 454 Sequencing and PCR-DGGE Fingerprinting
Cited by: 161
Author(s): Jutta Zwielehner, Cornelia Laßl, Berit Hippe, Angelika Pointner, Olivier J. Switzeny, Marlene Remely, Kitzweger Elvira, Ruckser Reinhard, Alexander G. Haslberger
Software Mentions: 1
Published: almost 13 years ago
10.1002/ece3.5273
Divergent selection along elevational gradients promotes genetic and phenotypic disparities among small mammal populations
Cited by: 11
Author(s): Anderson Feijó, Zhixin Wen, Jilong Cheng, Deyan Ge, Lin Xia, Qisen Yang
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-55490-3
The pitfalls of biodiversity proxies: Differences in richness patterns of birds, trees and understudied diversity across Amazonia
Cited by: 20
Author(s): Camila Duarte Ritter, Søren Faurby, Dominic J. Bennett, Luciano N. Naka, Hans ter Steege, Alexander Zizka, Quiterie Haenel, R. Henrik Nilsson, Alexandre Antonelli
Software Mentions: 1
Published: almost 5 years ago
10.3389/fmicb.2018.03020
The Effect of Density-Dependent Phase on the Locust Gut Bacterial Composition
Cited by: 14
Author(s): Omer Lavy, Uri Gophna, Eran Gefen, Amir Ayali
Software Mentions: 1
Published: almost 6 years ago
10.1038/srep03829
Rapid recovery of soil bacterial communities after wildfire in a Chinese boreal forest
Cited by: 112
Author(s): Xingjia Xiang, Yu Shi, Jian Yang, Jianjian Kong, Xiangui Lin, Huayong Zhang, Jun Zeng, Haiyan Chu
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0252605
Microbiomes of commercially-available pine nuts and sesame seeds
Cited by: 2
Author(s): Megan Fay, Joelle K. Salazar, Padmini Ramachandran, Diana Stewart
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2020.617696
Temporal Characteristics of the Oropharyngeal and Nasal Microbiota Structure in Crewmembers Stayed 180 Days in the Controlled Ecological Life Support System
Cited by: 6
Author(s): Yanwu Chen, Chong Xu, Chong-Fa Zhong, Zhitang Lyu, Junlian Liu, Zhanghuang Chen, Huanhuan Dun, Bingmu Xin, Qiang Xie
Software Mentions: 1
Published: almost 4 years ago
10.1002/ece3.5824
Assessment of the population of <i>Ostrea edulis</i> in Sweden: A marginal population of significance?
Cited by: 9
Author(s): Linnea Thorngren, Per Bergström, Thomas Dunér Holthuis, Mats Lindegarth
Software Mentions: 1
Published: about 5 years ago
10.1002/ece3.5039
Response of wild bee diversity, abundance, and functional traits to vineyard inter‐row management intensity and landscape diversity across Europe
Cited by: 51
Author(s): Sophie Kratschmer, Bärbel Pachinger, Martina Schwantzer, Daniel Paredes, Gema Guzmán, José A. Gómez, José-Antonio Entrenas, Muriel Guernion, Françoise Burel, Annegret Nicolaï, Albin Fertil, Daniela Popescu, Laura Ioana Macavei, Adela Hoble, Claudiu Ioan Bunea, Monika Kriechbaum, Johann G. Zaller, Silvia Winter
Software Mentions: 1
Published: over 5 years ago
10.1002/ece3.4524
Size-dependent movement explains why bigger is better in fragmented landscapes
Cited by: 22
Author(s): Jasmijn Hillaert, Thomas Hovestadt, Martijn L. Vandegehuchte, Dries Bonte
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0182579
Impacts of leachates from livestock carcass burial and manure heap sites on groundwater geochemistry and microbial community structure
Cited by: 11
Author(s): Man Jae Kwon, Seong Taek Yun, Baknoon Ham, Jehee Lee, Jun Seop Oh, Weon Wha Jheong
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0179739
Microbiota in anorexia nervosa: The triangle between bacterial species, metabolites and psychological tests
Cited by: 161
Author(s): Francesca Borgo, Alessandra Riva, Alberto Benetti, Maria Cristina Casiraghi, Sara Bertelli, Stefania Garbossa, Simona Anselmetti, Silvio Scarone, Antonio E. Pontiroli, Giulia Morace, Elisa Borghi
Software Mentions: 1
Published: over 7 years ago
10.1038/srep09456
A pyrosequencing insight into sprawling bacterial diversity and community dynamics in decaying deadwood logs of Fagus sylvatica and Picea abies
Cited by: 86
Author(s): Björn Hoppe, Krüger Krger, Tiemo Kahl, Tobias Arnstadt, François Buscot, Jürgen Bauhus, Tesfaye Wubet
Software Mentions: 1
Published: over 9 years ago
10.1038/s41598-019-55946-6
The Otranto Channel (South Adriatic Sea), a hot-spot area of plankton biodiversity: pelagic polychaetes
Cited by: 7
Author(s): Rosanna Guglielmo, A. Bergamasco, Roberta Minutoli, Francesco Paolo Patti, Genuario Belmonte, Nunziacarla Spanò, Giacomo Zagami, Vincenzo Bonanzinga, Letterio Guglielmo, Antonia Granata
Software Mentions: 1
Published: almost 5 years ago
10.7717/peerj.10866
Characteristics of planktonic and sediment bacterial communities in a heavily polluted urban river
Cited by: 3
Author(s): Heqing Huang, Jianhui Liu, Fanghui Zhang, Kangwen Zhu, Chunhua Yang, Qiujie Xiang, Bo Liu
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-019-55756-w
Sea anemone and clownfish microbiota diversity and variation during the initial steps of symbiosis
Cited by: 6
Author(s): Natacha Roux, Raphaël Lami, Pauline Salis, Kévin Magré, Pascal Romans, Patrick Masanet, David Lecchini, Vincent Laudet
Software Mentions: 1
Published: almost 5 years ago
10.7717/peerj.7553
Marked variations in gut microbiota and some innate immune responses of fresh water crayfish, marron (<i>Cherax cainii</i>, Austin 2002) fed dietary supplementation of <i>Clostridium butyricum</i>
Cited by: 13
Author(s): Javed Foysal, Thi Thu Thuy Nguyen, Reaz Chaklader, Muhammad A.B. Siddik, Chin Yen Tay, Ravi Fotedar, Sanjay Kumar Gupta
Software Mentions: 1
Published: about 5 years ago
10.7717/peerj.4231
Ant mosaics in Bornean primary rain forest high canopy depend on spatial scale, time of day, and sampling method
Cited by: 16
Author(s): Kalsum M. Yusah, William A. Foster, Glen Reynolds, Tom M. Fayle
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pone.0117853
Disentangling the Diversity of Arboreal Ant Communities in Tropical Forest Trees
Cited by: 42
Author(s): Petr Klimeš, Pavel Fibich, Cliffson Idigel, Maling Rimandai
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0201307
Habitat, species richness and hantaviruses of sigmodontine rodents within the Interior Atlantic Forest, Paraguay
Cited by: 12
Author(s): Gillian Eastwood, Jeremy V. Camp, Yong Kyu Chu, Aubrey M. Sawyer, Robert Dale Owen, Xueyuan Cao, Martha J. Taylor, Leonardo Valdivieso-Torres, Richard D. Sage, Ashley Yu, Doug Goodin, Vicente J. Martínez Bruyn, Ryan C. McAllister, Laura Rodríguez, Evan P. William, Colleen B. Jonsson
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0178791
Habitat modification and seasonality influence avian haemosporidian parasite distributions in southeastern Brazil
Cited by: 31
Author(s): Francisco C. Ferreira, Raquel A. Rodrigues, Vincenzo A. Ellis, Lemuel Olívio Leite, Magno Augusto Zazá Borges, Érika Martins Braga
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-019-43011-1
Radiative transfer modelling reveals why canopy reflectance follows function
Cited by: 15
Author(s): Teja Kattenborn, Sebastian Schmidtlein
Software Mentions: 1
Published: over 5 years ago
10.7717/peerj.9176
Aquatic insect community structure revealed by eDNA metabarcoding derives indices for environmental assessment
Cited by: 25
Author(s): Naotaka Uchida, Kengo Kubota, Shunsuke Aita, So Kazama
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2019.01735
Comparative Analyses of Fecal Microbiota in European Mouflon (Ovis orientalis musimon) and Blue Sheep (Pseudois nayaur) Living at Low or High Altitudes
Cited by: 24
Author(s): Guolei Sun, Honghai Zhang, Qinguo Wei, Chao Zhao, Xiufeng Yang, Xiaoyang Wu, Tian Xia, Guangshuai Liu, Lei Zhang, Ying Gao, Weilai Sha, Ying Liu
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0204128
Linking root exudates to functional plant traits
Cited by: 55
Author(s): Katharina Herz, Sophie Dietz, Karin Gorzolka, Sylvia Haider, Ute Jandt, Dierk Scheel, Helge Bruelheide
Software Mentions: 1
Published: about 6 years ago
10.7717/peerj.3986
Composition, diversity and function of intestinal microbiota in pacific white shrimp (<i>Litopenaeus vannamei</i>) at different culture stages
Cited by: 103
Author(s): Shenzheng Zeng, Zhijian Huang, Dongwei Hou, Jian Liu, Shaoping Weng, Jianguo He
Software Mentions: 1
Published: about 7 years ago
10.1038/s41598-019-43022-y
Antimicrobial removal on piglets promotes health and higher bacterial diversity in the nasal microbiota
Cited by: 28
Author(s): Florencia Correa‐Fiz, José Maurı́cio Gonçalves dos Santos, Francesc Illas, Virginia Aragón
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2021.693839
Effect of Dietary Amylose/Amylopectin Ratio on Intestinal Health and Cecal Microbes’ Profiles of Weaned Pigs Undergoing Feed Transition or Challenged With Escherichia coli Lipopolysaccharide
Cited by: 6
Author(s): Can Yang, Min Wang, Xian Fa Tang, Huansheng Yang, Fengna Li, Yancan Wang, Jianzhong Li, Yulong Yin
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2015.00115
Proteomic analysis reveals metabolic and regulatory systems involved in the syntrophic and axenic lifestyle of Syntrophomonas wolfei
Cited by: 45
Author(s): Jessica R. Sieber, Bryan R. Crable, Cody S. Sheik, Gregory B. Hurst, Lars Rohlin, Robert P. Gunsalus, Michael J. McInerney
Software Mentions: 1
Published: almost 10 years ago
10.1128/mSphere.00984-19
Perinatal Antibiotic Exposure Affects the Transmission between Maternal and Neonatal Microbiota and Is Associated with Early-Onset Sepsis
Cited by: 39
Author(s): Ping Zhou, Yanxia Zhou, Bin Liu, Zhenchao Jin, Xueling Zhuang, Wenkui Dai, Zhenyu Yang, Xin Feng, Qian Zhou, Yanhong Liu, Ximing Xu, Lian Zhang
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2014.00757
Characterization of shed medicinal leech mucus reveals a diverse microbiota
Cited by: 13
Author(s): Brittany M. Ott, Allen A. Rickards, Lauren Gehrke, Rita V. M. Rio
Software Mentions: 1
Published: almost 10 years ago
10.7717/peerj.9375
Response of arbuscular mycorrhizal fungal community in soil and roots to grazing differs in a wetland on the Qinghai-Tibet plateau
Cited by: 6
Author(s): Zhongfeng Li, Pingli Lu, Yong-Long Wang, Hui Yao, Pulak Maitra, Xiang Sun, Yong Zheng, Liang‐Dong Guo
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0035969
Land Cover and Rainfall Interact to Shape Waterbird Community Composition
Cited by: 13
Author(s): Colin E. Studds, William V. DeLuca, Matthew E. Baker, Ryan S. King, Peter P. Marra
Software Mentions: 1
Published: over 12 years ago
10.3389/fmicb.2017.01975
Soil Viral Communities Vary Temporally and along a Land Use Transect as Revealed by Virus-Like Particle Counting and a Modified Community Fingerprinting Approach (fRAPD)
Cited by: 41
Author(s): Anja Narr, Ali Nawaz, Lukas Y. Wick, Hauke Harms, Antonis Chatzinotas
Software Mentions: 1
Published: about 7 years ago
10.3389/fmicb.2015.00971
The diversity of the N2O reducers matters for the N2O:N2 denitrification end-product ratio across an annual and a perennial cropping system
Cited by: 100
Author(s): Luiz A. Domeignoz‐Horta, Aymé Spor, David Bru, Marie-Christine Breuil, Florian Bizouard, Joël Léonard, Laurent Philippot
Software Mentions: 1
Published: about 9 years ago
10.3389/fmicb.2019.00760
High Growth Potential of Long-Term Starved Deep Ocean Opportunistic Heterotrophic Bacteria
Cited by: 29
Author(s): Marta Sebastián, Margarita Estrany, Clara Ruiz‐González, Irene Forn, M. Montserrat Sala, Josep M. Gasol, Cèlia Marrasé
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2021.712189
Analysis of Sour Porridge Microbiota and Improvement of Cooking Quality via Pure Culture Fermentation Using Lacticaseibacillus paracasei Strain SZ02
Cited by: 0
Author(s): Cheng Wang, Yan Xu, Bin Yu, Aibo Xiao, Yuhong Su, Haonan Guo, Huajiang Zhang, Lili Zhang
Software Mentions: 1
Published: about 3 years ago
10.1128/mBio.01969-20
Metagenomic Next-Generation Sequencing of Nasopharyngeal Specimens Collected from Confirmed and Suspect COVID-19 Patients
Cited by: 109
Author(s): Heba H. Mostafa, John A. Fissel, Brian Fanelli, Yehudit Bergman, Victoria Gniazdowski, Manoj Dadlani, Karen C. Carroll, Rita R. Colwell, Patricia J. Simner
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0090510
Intercropping with Shrub Species That Display a ‘Steady-State’ Flowering Phenology as a Strategy for Biodiversity Conservation in Tropical Agroecosystems
Cited by: 3
Author(s): Valerie E. Peters
Software Mentions: 1
Published: over 10 years ago
10.1002/ece3.1367
Diversity patterns of ground beetles and understory vegetation in mature, secondary, and plantation forest regions of temperate northern China
Cited by: 23
Author(s): Yi Zou, Weiguo Sang, Shunzhong Wang, Eleanor Warren‐Thomas, Yunhui Liu, Zhenrong Yu, Changliu Wang, Jan C. Axmacher
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0063985
Symbiodinium Community Composition in Scleractinian Corals Is Not Affected by Life-Long Exposure to Elevated Carbon Dioxide
Cited by: 26
Author(s): Sam H. C. Noonan, Katharina Fabricius, Craig Humphrey
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0062885
Molecular Characterization of the Fecal Microbiota in Patients with Nonalcoholic Steatohepatitis – A Longitudinal Study
Cited by: 258
Author(s): Vincent Wai‐Sun Wong, Chi‐Shing Tse, Tommy Tsan-Yuk Lam, Grace Lai–Hung Wong, Angel Mei–Ling Chim, Winnie C.W. Chu, David W. K. Yeung, Patrick Tik Wan Law, Hoi Shan Kwan, Jun Yu, Joseph J.Y. Sung, Henry Lik–Yuen Chan
Software Mentions: 1
Published: over 11 years ago
10.3389/fmicb.2017.01214
The Bacterial Ecosystem of Mother’s Milk and Infant’s Mouth and Gut
Cited by: 102
Author(s): Elena Biagi, Sara Quercia, Arianna Aceti, Isadora Beghetti, Simone Rampelli, Silvia Turroni, Giacomo Faldella, Marco Candela, Patrizia Brigidi, Luigi Corvaglia
Software Mentions: 1
Published: over 7 years ago
10.3389/fmicb.2017.02304
Increased Denitrification Rates Associated with Shifts in Prokaryotic Community Composition Caused by Varying Hydrologic Connectivity
Cited by: 22
Author(s): Abigail Tomasek, Christopher Staley, Ping Wang, Thomas Kaiser, Nicole Lurndahl, J. L. Kozarek, Miki Hondzo, Michael J. Sadowsky
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0148607
Functional Resilience against Climate-Driven Extinctions – Comparing the Functional Diversity of European and North American Tree Floras
Cited by: 18
Author(s): Mario Liebergesell, Björn Reu, Ulrike Stahl, Martin Freiberg, Erik Welk, Jens Kattge, Johannes H. C. Cornelissen, Josep Peñuelas, Christian Wirth
Software Mentions: 1
Published: almost 9 years ago
10.3389/fmicb.2020.00750
Impact of Soybean Nodulation Phenotypes and Nitrogen Fertilizer Levels on the Rhizosphere Bacterial Community
Cited by: 14
Author(s): Hao Wang, Chuntao Gu, Xiaofeng Liu, Chunwei Yang, Wenbin Li, Shaodong Wang
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0221678
Immigration and establishment of Trypanosoma cruzi in Arequipa, Peru
Cited by: 7
Author(s): Alexander S. F. Berry, Renzo Salazar-Sánchez, Ricardo Castillo-Neyra, Katty Borrini-Mayorí, Claudia Chipana-Ramos, Melina Vargas-Maquera, Jenny Ancca-Juárez, César Náquira-Velarde, Michael Z. Levy, Dustin Brisson
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0037302
Salmonella Strains Isolated from Galápagos Iguanas Show Spatial Structuring of Serovar and Genomic Diversity
Cited by: 8
Author(s): Emily W. Lankau, Lenin Cruz Bedon, Roderick I. Mackie
Software Mentions: 1
Published: over 12 years ago
10.3389/fmicb.2018.00709
Variations of Bacterial Community Diversity Within the Rhizosphere of Three Phylogenetically Related Perennial Shrub Plant Species Across Environmental Gradients
Cited by: 34
Author(s): Xiaofan Na, Tingting Xu, Ming Li, Zhaona Zhou, Shaolan Ma, Jing Wang, Jun He, Bingzhong Jiao, Fei Ma
Software Mentions: 1
Published: over 6 years ago
10.1002/ece3.4611
Asymmetric response of different functional insect groups to low‐grazing pressure in Eurasian steppe in Ningxia
Cited by: 7
Author(s): Zhijun Zhao, Jing Wei, Kaiyang Zhang, Hao Li, Shuhua Wei, Xubin Pan, Wenguang Huang, Ming Zhu, Rong Zhang
Software Mentions: 1
Published: about 6 years ago
10.3389/fmicb.2016.00661
Dietary Shifts May Trigger Dysbiosis and Mucous Stools in Giant Pandas (Ailuropoda melanoleuca)
Cited by: 27
Author(s): Candace L. Williams, Kimberly A. Dill‐McFarland, Michael W. Vandewege, Darrell Sparks, Scott T. Willard, Andrew J. Kouba, Garret Suen, A. C. Brown
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0078875
Exploratory Hydrocarbon Drilling Impacts to Arctic Lake Ecosystems
Cited by: 15
Author(s): Joshua R. Thienpont, Steven V. Kokelj, Jennifer B. Korosi, Elisa S. Cheng, Cyndy M. Desjardins, Linda E. Kimpe, Jules M. Blais, Michael F. J. Pisaric, John P. Smol
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0239900
Population structure analysis and identification of genomic regions under selection associated with low-nitrogen tolerance in tropical maize lines
Cited by: 3
Author(s): Gustavo César Sant’Ana, Fernando Garcia Espolador, Ítalo Stefanine Correia Granato, Leandro Freitas Mendonça, Roberto Fritsche‐Neto, Aluízio Borém
Software Mentions: 1
Published: about 4 years ago
10.7717/peerj.7631
Differential mechanisms underlying responses of soil bacterial and fungal communities to nitrogen and phosphorus inputs in a subtropical forest
Cited by: 14
Author(s): Yong Li, Dashuan Tian, Jinsong Wang, Shuli Niu, Jing Tian, Denglong Ha, Yuxi Qu, Guangwei Jing, Xiaoming Kang, Bing Song
Software Mentions: 1
Published: about 5 years ago
10.3389/fmicb.2014.00311
A dual-species co-cultivation system to study the interactions between Roseobacters and dinoflagellates
Cited by: 90
Author(s): Hui Wang, Jürgen Tomasch, Michael Jarek, Irene Wagner‐Döbler
Software Mentions: 1
Published: over 10 years ago
10.7717/peerj.1556
Historical and current introgression in a Mesoamerican hummingbird species complex: a biogeographic perspective
Cited by: 22
Author(s): Rosa Alicia Jiménez, Juan Francisco Ornelas
Software Mentions: 1
Published: almost 10 years ago
10.1002/ece3.3252
Phenotypic differentiation of the<i>Solidago virgaurea</i>complex along an elevational gradient: Insights from a common garden experiment and population genetics
Cited by: 17
Author(s): Minoru Hirano, Shota Sakaguchi, Koichi Takahashi
Software Mentions: 1
Published: over 7 years ago
10.3389/fmicb.2019.00159
Elevated Gut Microbiome-Derived Propionate Levels Are Associated With Reduced Sterile Lung Inflammation and Bacterial Immunity in Mice
Cited by: 45
Author(s): Xiaoli Tian, Judith Hellman, Alexander R. Horswill, Heidi A. Crosby, Kevin P. Francis, Arun Prakash
Software Mentions: 1
Published: almost 6 years ago
10.1038/s41598-019-44788-x
Microbial community structure of soils in Bamenwan mangrove wetland
Cited by: 33
Author(s): Min Liu, Huiqin Huang, Siqi Bao, Yuhe Tong
Software Mentions: 1
Published: over 5 years ago
10.7717/peerj.8984
Farming by soil in Europe: status and outlook of cropping systems under different pedoclimatic conditions
Cited by: 1
Author(s): Gergely Tóth, Tamás Kismányoky, Piroska Kassai, Tamás Hermann, Oihane Fernández‐Ugalde, Brigitta Szabó
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0147039
Exploration of Human Salivary Microbiomes—Insights into the Novel Characteristics of Microbial Community Structure in Caries and Caries-Free Subjects
Cited by: 37
Author(s): Jianye Zhou, Nan Jiang, Shaoguo Wang, Xiao-Pan Hu, Kangli Jiao, Xiangyi He, Zhiqiang Li, Jizeng Wang
Software Mentions: 1
Published: almost 9 years ago
10.1002/ece3.7186
Phylogeography and ecological niche modeling reveal evolutionary history of<i>Leiolepis ocellata</i>(Squamata, Leiolepidae)
Cited by: 4
Author(s): Pattarapon Promnun, Nontivich Tandavanitj, Chalita Kongrit, Kritsayam Kongsatree, Phinit Kongpraphan, Wuttipong Dongkumfu, Detanan Kumsuan, Jenjit Khudamrongsawat
Software Mentions: 1
Published: almost 4 years ago
10.3389/fmolb.2020.00133
An Ancient Residue Metabolomics-Based Method to Distinguish Use of Closely Related Plant Species in Ancient Pipes
Cited by: 7
Author(s): Korey J. Brownstein, Shannon Tushingham, William J. Damitio, Tung T. Nguyen, David R. Gang
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0039146
Habitat Loss other than Fragmentation per se Decreased Nuclear and Chloroplast Genetic Diversity in a Monoecious Tree
Cited by: 17
Author(s): Xin Zhang, Miaomiao Shi, Dong-Wei Shen, Xiao‐Yong Chen
Software Mentions: 1
Published: over 12 years ago
10.3389/fmicb.2017.01912
Patterns and Processes in Marine Microeukaryotic Community Biogeography from Xiamen Coastal Waters and Intertidal Sediments, Southeast China
Cited by: 91
Author(s): Weidong Chen, Yongbo Pan, Lingyu Yu, Jun Yang, Wenjing Zhang
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0049867
Different Distribution Patterns between Putative Ercoid Mycorrhizal and Other Fungal Assemblages in Roots of Rhododendron decorum in the Southwest of China
Cited by: 20
Author(s): Lifu Sun, Kequan Pei, Fang Wang, Qiong Ding, Yanhong Bing, Bo Gao, Zhenming Yu, Yu Liang, Keping Ma
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0202746
Effect of seawater temperature, pH, and nutrients on the distribution and character of low abundance shallow water benthic foraminifera in the Galápagos
Cited by: 15
Author(s): Alexander F. Humphreys, Jochen Halfar, James C. Ingle, Derek P. Manzello, Claire E. Reymond, Hildegard Westphal, Bernhard Riegl
Software Mentions: 1
Published: about 6 years ago
10.1186/s40168-018-0580-7
An exploration of Prevotella-rich microbiomes in HIV and men who have sex with men
Cited by: 95
Author(s): Abigail J. S. Armstrong, Michael J. Shaffer, Nichole M. Nusbacher, Christine Griesmer, Suzanne Fiorillo, Jennifer M. Schneider, C. Preston Neff, Sam X. Li, Andrew P. Fontenot, Thomas Campbell, Brent E. Palmer, Catherine Lozupone
Software Mentions: 1
Published: about 6 years ago
10.3389/fmicb.2018.00584
Spatiotemporal Distribution and Assemblages of Planktonic Fungi in the Coastal Waters of the Bohai Sea
Cited by: 34
Author(s): Yaqiong Wang, Biswarup Sen, Yaodong He, Nan Xie, Guangyi Wang
Software Mentions: 1
Published: over 6 years ago
10.1128/mBio.01306-21
A Novel Freshwater to Marine Evolutionary Transition Revealed within <i>Methylophilaceae</i> Bacteria from the Arctic Ocean
Cited by: 12
Author(s): Arthi Ramachandran, Susan McLatchie, David A. Walsh
Software Mentions: 1
Published: over 3 years ago