cran: vegan | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2020.01021

Bacterial Communities in Stream Biofilms in a Degrading Grassland Watershed on the Qinghai–Tibet Plateau
Cited by: 12
Author(s): Ze Ren, Decao Niu, Panpan Ma, Ying Wang, Zhaomin Wang, Hua Fu, James J. Elser
Software Mentions: 2
Published: over 4 years ago

10.7717/peerj.11520

Dynamics of rumen bacterial composition of yak (Bos grunniens) in response to dietary supplements during the cold season
Cited by: 6
Author(s): Anum Ali Ahmad, Jian Bo Zhang, Linhao Zhong, Chao Yang, Qudratullah Kalwar, Tariq Shah, Mei Du, Ishaq Muhammad, Juanshan Zheng, Ping Yan, Xuezhi Ding, Ruijun Long
Software Mentions: 2
Published: over 3 years ago

10.7717/peerj.3594

The effect of captivity on the skin microbial symbionts in three Atelopus species from the lowlands of Colombia and Ecuador
Cited by: 14
Author(s): Sandra V. Flechas, Ailín Blasco-Zúñiga, Andrés Merino‐Viteri, Valeria Ramírez‐Castañeda, Miryan Rivera, Adolfo Amézquita
Software Mentions: 2
Published: over 7 years ago

10.7717/peerj.8517

Microbial communities on fish eggs from Acanthopagrus schlegelii and Halichoeres nigrescens at the XuWen coral reef in the Gulf of Tonkin
Cited by: 4
Author(s): Shaoping Bai, Gang Hou
Software Mentions: 2
Published: almost 5 years ago

10.1128/mSphere.00163-19

The Impact of DNA Polymerase and Number of Rounds of Amplification in PCR on 16S rRNA Gene Sequence Data
Cited by: 80
Author(s): Marc A. Sze, Patrick D. Schloss
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.6412

Impact of intercropping on the coupling between soil microbial community structure, activity, and nutrient-use efficiencies
Cited by: 53
Author(s): Tengxiang Lian, Yinghui Mu, Jian Jin, Qibin Ma, Yanbo Cheng, Zhandong Cai, Hai Nian
Software Mentions: 2
Published: almost 6 years ago

10.1128/mSphere.00143-19

Component Microenvironments and System Biogeography Structure Microorganism Distributions in Recirculating Aquaculture and Aquaponic Systems
Cited by: 35
Author(s): Ryan P. Bartelme, Matthew C. Smith, Osvaldo J. Sepulveda‐Villet, Ryan J. Newton
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2020.536535

Patterns of in situ Mineral Colonization by Microorganisms in a ~60°C Deep Continental Subsurface Aquifer
Cited by: 7
Author(s): Sean W. Mullin, Greg Wanger, Brittany R. Kruger, Joshua D. Sackett, Scott D. Hamilton-Brehm, R. Bhartia, Jan P. Amend, Duane P. Moser, Victoria J. Orphan
Software Mentions: 2
Published: about 4 years ago

10.3389/fmicb.2019.02950

Silicate Fertilizer Amendment Alters Fungal Communities and Accelerates Soil Organic Matter Decomposition
Cited by: 12
Author(s): Suvendu Das, Jeong Gu Lee, Song Rae Cho, Hyeon Ji Song
Software Mentions: 2
Published: almost 5 years ago

10.1186/1471-2105-10-33

Evaluating the impact of scoring parameters on the structure of intra-specific genetic variation using RawGeno, an R package for automating AFLP scoring
Cited by: 134
Author(s): Nils Arrigo, Jarek W Tuszynski, Dorothée Ehrich, Tommy Gerdes, Nadir Alvarez
Software Mentions: 2
Published: almost 16 years ago

10.3389/fmicb.2018.02430

Effects of a Commercial Microbial Agent on the Bacterial Communities in Shrimp Culture System
Cited by: 20
Author(s): Zidan Liu, Linglin Qiuqian, Zhiyuan Yao, Xin Wang, Lei Huang, Jialai Zheng, Kai Wang, Laiguo Li, Demin Zhang
Software Mentions: 2
Published: about 6 years ago

10.7717/peerj.2459

Spatial heterogeneity of physicochemical properties explains differences in microbial composition in arid soils from Cuatro Cienegas, Mexico
Cited by: 22
Author(s): Silvia Pajares, Ana E. Escalante, Ana M. Noguez, Felipe García‐Oliva, Celeste Martínez-Piedragil, Silke Cram, Luis E. Eguiarte, Valeria Souza
Software Mentions: 2
Published: about 8 years ago

10.7717/peerj.5754

Residue management alters microbial diversity and activity without affecting their community composition in black soil, Northeast China
Cited by: 10
Author(s): Song Gu, Xingjun Guo, Yuetong Cai, Zehui Zhang, Shuai Wu, Xin Li, Huihui Zhang, Wei Yang
Software Mentions: 2
Published: about 6 years ago

10.7717/peerj.3479

Alder and the Golden Fleece: high diversity of Frankia and ectomycorrhizal fungi revealed from Alnus glutinosa subsp. barbata roots close to a Tertiary and glacial refugium
Cited by: 12
Author(s): Mélanie Roy, A. Pozzi, Raphaëlle Gareil, Mélissande Nagati, Sophie Manzi, Imen Nouioui, Nino Sharikadze, Patricia Jargeat, Hervé Gryta, Pierre–Arthur Moreau, María P. Fernández, Monique Gardes
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2020.01519

Fungal Endophyte Communities of Crucifer Crops Are Seasonally Dynamic and Structured by Plant Identity, Plant Tissue and Environmental Factors
Cited by: 10
Author(s): Junhui Chen, Komivi Senyo Akutse, Hafiz Sohaib Ahmed Saqib, Xiaolu Wu, Fei‐Ying Yang, Xiaofeng Xia, Liande Wang, Mark S. Goettel, Minsheng You, Geoff M. Gurr
Software Mentions: 2
Published: over 4 years ago

10.5713/ajas.19.0226

Illumina MiSeq sequencing reveals the effects of grape seed procyanidin on rumen archaeal communities in vitro
Cited by: 6
Author(s): Hua Zhang, Jinjin Tong, Zun Wang, Benhai Xiong, Linshu Jiang
Software Mentions: 2
Published: almost 5 years ago

10.1186/s42523-020-00053-5

Recovery and resiliency of skin microbial communities on the southern leopard frog (Lithobates sphenocephalus) following two biotic disturbances
Cited by: 5
Author(s): Denita Mychele Weeks, Matthew J. Parris, Shawn P. Brown
Software Mentions: 2
Published: about 4 years ago

10.3389/fmicb.2018.00354

Linking the Effect of Antibiotics on Partial-Nitritation Biofilters: Performance, Microbial Communities and Microbial Activities
Cited by: 34
Author(s): Alejandro González‐Martínez, Alejandro Margareto, Alejandro Rodríguez-Sánchez, Chiara Pesciaroli, M. Silvia Díaz˗Cruz, Damià Barceló, Riku Vahala
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.2250

Flower diversity and bee reproduction in an arid ecosystem
Cited by: 6
Author(s): Jimena Dorado, Diego P. Vázquez
Software Mentions: 2
Published: over 8 years ago

10.1186/s13075-021-02620-w

Gut microbiota mediated the therapeutic efficacies and the side effects of prednisone in the treatment of MRL/lpr mice
Cited by: 24
Author(s): Mingzhu Wang, Zhengyang Zhu, Xiaoying Lin, Haichang Li, Chengping Wen, Jie Bao, Zhixing He
Software Mentions: 2
Published: about 3 years ago

10.7717/peerj.2853

Identifying zooplankton community changes between shallow and upper-mesophotic reefs on the Mesoamerican Barrier Reef, Caribbean
Cited by: 10
Author(s): Dominic A. Andradi‐Brown, Catherine E. I. Head, Dan A. Exton, Christina L. Hunt, Alicia Hendrix, Erika Gress, Alex D. Rogers
Software Mentions: 2
Published: almost 8 years ago

10.7717/peerj.695

Metabolic diversity and niche structure in sponges from the Miskito Cays, Honduras
Cited by: 26
Author(s): Christopher Freeman, Cole G. Easson, David M. Baker
Software Mentions: 2
Published: almost 10 years ago

10.1155/2021/8894455

Performance Analysis and Microbial Community Evolution of In Situ Biological Biogas Upgrading with Increasing H2/CO2 Ratio
Cited by: 7
Author(s): Viola Corbellini, Feng Chen, Micol Bellucci, Arianna Catenacci, Tatiana Stella, Anna Espinoza-Tofalos, Francesca Malpei
Software Mentions: 2
Published: almost 4 years ago

10.7717/peerj.7669

Searching for phylogenetic patterns of Symbiodiniaceae community structure among Indo-Pacific Merulinidae corals
Cited by: 14
Author(s): Sébastien Leveque, Lutfi Afiq‐Rosli, Yin Cheong Aden Ip, Sudhanshi S. Jain, Danwei Huang
Software Mentions: 2
Published: about 5 years ago

10.7717/peerj.1936

In four shallow and mesophotic tropical reef sponges from Guam the microbial community largely depends on host identity
Cited by: 50
Author(s): Georg Steinert, Michael W. Taylor, Peter Deines, Rachel L. Simister, Nicole J. de Voogd, Michael Hoggard, Peter J. Schupp
Software Mentions: 2
Published: over 8 years ago

10.7717/peerj.11231

Diversity patterns and drivers of soil microbial communities in urban and suburban park soils of Shanghai, China
Cited by: 7
Author(s): Weiwei Zhang, Jigang Han, Haibing Wu, Qicheng Zhong, Wen Liu, Shan-Wen He, Lang Zhang
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2017.02126

The Patterns and Drivers of Bacterial and Fungal β-Diversity in a Typical Dryland Ecosystem of Northwest China
Cited by: 55
Author(s): Jianming Wang, Tianhan Zhang, Liping Li, Jingwen Li, Feng Yin, Qi Lu
Software Mentions: 2
Published: about 7 years ago

10.7717/peerj.10905

Depression of the soil arbuscular mycorrhizal fungal community by the canopy gaps in a Japanese cedar (Cryptomeria japonica) plantation on Lushan Mountain, subtropical China
Cited by: 4
Author(s): Guiwu Zou, Yuanqiu Liu, Fansen Kong, Liqin Liao, Guanghua Deng, Jiang Xue, Junhuo Cai, Wei Liu
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2017.02560

Host Specificity for Bacterial, Archaeal and Fungal Communities Determined for High- and Low-Microbial Abundance Sponge Species in Two Genera
Cited by: 28
Author(s): Maryam Chaib De Mares, Detmer Sipkema, Sixing Huang, Boyke Bunk, Jörg Overmann, Jan Dirk van Elsas
Software Mentions: 2
Published: almost 7 years ago

10.1128/mSphere.00827-19

Comparison of Methods To Collect Fecal Samples for Microbiome Studies Using Whole-Genome Shotgun Metagenomic Sequencing
Cited by: 23
Author(s): Doratha A Byrd, Rashmi Sinha, Kristi L. Hoffman, Jun Chen, Xing Hua, Jianxin Shi, Nicholas Chia, Joseph F. Petrosino, Emily Vogtmann
Software Mentions: 2
Published: over 4 years ago

10.7717/peerj.1740

Increasing land use drives changes in plant phylogenetic diversity and prevalence of specialists
Cited by: 5
Author(s): Soraya Villalobos, Jana C. Vamosi
Software Mentions: 2
Published: over 8 years ago

10.7717/peerj.4653

Soft-bottom fishes and spatial protection: findings from a temperate marine protected area
Cited by: 11
Author(s): Inês Sousa, Jorge M. S. Gonçalves, Joachim Claudet, Rui Coelho, Emanuel João Gonçalves, Karim Erzini
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.6731

Throwing light on dark diversity of vascular plants in China: predicting the distribution of dark and threatened species under global climate change
Cited by: 7
Author(s): Lili Tang, Runxi Wang, Kate S. He, Cong Shi, Tong Yang, Ya‐Ping Huang, Pufan Zheng, Fuchen Shi
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2020.580081

Complete Genome Sequence of Enterobacter roggenkampii ED5, a Nitrogen Fixing Plant Growth Promoting Endophytic Bacterium With Biocontrol and Stress Tolerance Properties, Isolated From Sugarcane Root
Cited by: 53
Author(s): Dao-Jun Guo, Rajesh Kumar Singh, Pratiksha Singh, Dong-Ping Li, Anjney Sharma, Yong‐Xiu Xing, Xiu–Peng Song, Li‐Tao Yang, Yang–Rui Li
Software Mentions: 2
Published: about 4 years ago

10.7717/peerj.386

Quantifying crypticSymbiodiniumdiversity withinOrbicella faveolataandOrbicella franksiat the Flower Garden Banks, Gulf of Mexico
Cited by: 53
Author(s): Elizabeth A. Green, Sarah W. Davies, Mikhail V. Matz, Mónica Medina
Software Mentions: 2
Published: over 10 years ago

10.1155/2016/5916067

Methanogen Diversity in Indigenous and Introduced Ruminant Species on the Tibetan Plateau
Cited by: 28
Author(s): Xiaowu Huang, Gonzalo Martínez Fernández, Jagadish Padmanabha, Ruijun Long, Stuart E. Denman, Christopher S. McSweeney
Software Mentions: 2
Published: almost 9 years ago

10.7717/peerj.8923

Dynamic changes in intestinal microbiota in young forest musk deer during weaning
Cited by: 6
Author(s): Yimeng Li, Minghui Shi, Tianxiang Zhang, Xin Hu, Baofeng Zhang, Sheng‐Quan Xu, Jianhong Ding, Defu Hu, Shuqiang Liu
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2018.02462

Fungal Endophytic Communities of Two Wild Rosa Varieties With Different Powdery Mildew Susceptibilities
Cited by: 15
Author(s): Yi Zhao, Zichang Xiong, Guang-li Wu, Wei-xiao Bai, Zheng-qing Zhu, Yonghan Gao, Shobhika Parmar, Vijay Kumar Sharma, Haiyan Li
Software Mentions: 2
Published: about 6 years ago

10.7717/peerj.5896

A trait-based ecology to assess the acclimation of a sperm-dependent clonal fish compared to its sexual host
Cited by: 2
Author(s): Christelle Leung, Sophie Breton, Bernard Angers
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2020.599614

Patterns of Relative and Quantitative Abundances of Marine Bacteria in Surface Waters of the Subtropical Northwest Pacific Ocean Estimated With High-Throughput Quantification Sequencing
Cited by: 11
Author(s): Jie Kong, Xin Liu, Lei Wang, Bangqin Huang, Danyun Ou, Jiayu Guo, Edward A. Laws, Bangqin Huang
Software Mentions: 2
Published: almost 4 years ago

10.7717/peerj.12103

Species diversity and community structure of crustacean zooplankton in the highland small waterbodies in Northwest Yunnan, China
Cited by: 0
Author(s): Xing Chen, Qinghua Cai, Lu Tan, Shuoran Liu, Wen Xiao, Lin Ye
Software Mentions: 2
Published: about 3 years ago

10.3389/fmicb.2019.02238

Microbiomes in Soils Exposed to Naturally High Concentrations of CO2 (Bossoleto Mofette Tuscany, Italy)
Cited by: 8
Author(s): Stefano Fazi, Fabrizio Ungaro, Stefanía Venturi, Lara Vimercati, Carolina Cruz Viggi, Silvia Baronti, Francesca Ugolini, Costanza Calzolari, Franco Tassi, Orlando Vaselli, A. Raschi, Federico Aulenta
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2019.00163

Significant Differences in Bacterial and Potentially Pathogenic Communities Between Sympatric Hooded Crane and Greater White-Fronted Goose
Cited by: 23
Author(s): Xingjia Xiang, Fengling Zhang, Rong Fu, Shaomin Yan, Lizhi Zhou
Software Mentions: 2
Published: almost 6 years ago

10.1002/jia2.25628

Efficacy of silk fibroin biomaterial vehicle for in vivo mucosal delivery of Griffithsin and protection against HIV and SHIV infection ex vivo
Cited by: 13
Author(s): Katti R. Crakes, Carolina Herrera, John D. Morgan, Katie J. Olstad, Ann J. Hessell, Paul Ziprin, Patricia J. LiWang, Satya Dandekar
Software Mentions: 2
Published: about 4 years ago

10.3389/fmicb.2021.693535

The Long-Term Effects of Using Phosphate-Solubilizing Bacteria and Photosynthetic Bacteria as Biofertilizers on Peanut Yield and Soil Bacteria Community
Cited by: 23
Author(s): Yiming Wang, Shuang Peng, Qingqing Hua, Chongwen Qiu, Pan Wu, Xiaoli Liu, Xiangui Lin
Software Mentions: 2
Published: over 3 years ago

10.1016/j.jid.2017.05.029

Cutaneous Nod2 Expression Regulates the Skin Microbiome and Wound Healing in a Murine Model
Cited by: 28
Author(s): Helen Williams, Rachel A. Crompton, Helen A. Thomason, Laura Campbell, Gurdeep Singh, Andrew J. McBain, Sheena M. Cruickshank, Matthew J. Hardman
Software Mentions: 2
Published: about 7 years ago

10.7717/peerj.6027

Saproxylic Diptera assemblages in a temperate deciduous forest: implications for community assembly
Cited by: 7
Author(s): Julia J. Mlynarek, Amélie Grégoire Taillefer, Terry A. Wheeler
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2016.02142

Sampling Modification Effects in the Subgingival Microbiome Profile of Healthy Children
Cited by: 5
Author(s): Elisabeth Santigli, Slave Trajanoski, Katharina Eberhard, Barbara Klug
Software Mentions: 2
Published: almost 8 years ago

10.1007/s00203-021-02196-8

Impacts of replanting American ginseng on fungal assembly and abundance in response to disease outbreaks
Cited by: 19
Author(s): Ji Li, Lei Tian, Fahad Nasir, Jingjing Chang, Chunguang Chang, Jianfeng Zhang, Xiujun Li, Chunjie Tian
Software Mentions: 2
Published: almost 4 years ago

10.1007/s00203-019-01661-9

Diversity and distribution of thermophilic hydrogenogenic carboxydotrophs revealed by microbial community analysis in sediments from multiple hydrothermal environments in Japan
Cited by: 15
Author(s): Kimiho Omae, Yuto Fukuyama, Hisato Yasuda, Kenta Mise, Takashi Yoshida, Yoshihiko Sako
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.6854

Comparison of microbial community structures in soils with woody organic amendments and soils with traditional local organic amendments in Ningxia of Northern China
Cited by: 7
Author(s): Zhigang Li, Kaiyang Qiu, Rebecca L. Schneider, Stephen J. Morreale, Yi Xie
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2015.00824

Characterization of the gut microbiota of Kawasaki disease patients by metagenomic analysis
Cited by: 43
Author(s): Akiko Kinumaki, Tsuyoshi Sekizuka, Hiromichi Hamada, Kengo Kato, Akifumi Yamashita, Makoto Kuroda
Software Mentions: 2
Published: over 9 years ago

10.1186/2046-9063-9-22

Detritus-based assemblage responses under salinity stress conditions in a disused aquatic artificial ecosystem
Cited by: 3
Author(s): Fulvio Cerfolli, Bruno Bellisario, Corrado Battisti
Software Mentions: 2
Published: almost 12 years ago

10.3389/fmicb.2019.00241

Factors Influencing Leaf- and Root-Associated Communities of Bacteria and Fungi Across 33 Plant Orders in a Grassland
Cited by: 36
Author(s): Hirokazu Toju, Hiroko Kurokawa, Tanaka Kenta
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2015.01519

Bacterial Diversity in Submarine Groundwater along the Coasts of the Yellow Sea
Cited by: 17
Author(s): Qi Ye, Jianan Liu, Jinzhou Du, Jing Zhang
Software Mentions: 2
Published: almost 9 years ago

10.3390/pathogens9080638

Characterization of Cutaneous Bacterial Microbiota from Superficial Pyoderma Forms in Atopic Dogs
Cited by: 23
Author(s): Caitlin E. Older, Aline Rodrigues Hoffmann, Kathleen Hoover, Frane Banović
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2020.01587

Bacterial Communities of the Canola Rhizosphere: Network Analysis Reveals a Core Bacterium Shaping Microbial Interactions
Cited by: 13
Author(s): Jean-Baptiste Floc’h, Chantal Hamel, Newton Z. Lupwayi, K. Neil Harker, Mohamed Hijri, Marc St‐Arnaud
Software Mentions: 2
Published: over 4 years ago

10.1002/aps3.1223

Utilizing herbarium specimens to quantify historical mycorrhizal communities
Cited by: 15
Author(s): J. Mason Heberling, David Burke
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2018.01392

Antarctic Cryptoendolithic Fungal Communities Are Highly Adapted and Dominated by Lecanoromycetes and Dothideomycetes
Cited by: 49
Author(s): Claudia Coleine, Jason E. Stajich, Laura Zucconi, Silvano Onofri, Nuttapon Pombubpa, Eleonora Egidi, Ashley E. Franks, Pietro Buzzini, Laura Selbmann
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2017.02203

Geochemical Influence on Microbial Communities at CO2-Leakage Analog Sites
Cited by: 15
Author(s): Baknoon Ham, Byoung Young Choi, Gi-Tak Chae, Matthew F. Kirk, Man Jae Kwon
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2021.623853

Graphene-Based Nanomaterials Modulate Internal Biofilm Interactions and Microbial Diversity
Cited by: 4
Author(s): Lauris Evariste, Paul Braylé, Florence Mouchet, Jérôme Silvestre, Laury Gauthier, Emmanuel Flahaut, Éric Pinelli, Maialen Barret
Software Mentions: 2
Published: over 3 years ago

10.3390/pathogens10081068

Comparison of Chicken Cecal Microbiota after Metaphylactic Treatment or Following Administration of Feed Additives in a Broiler Farm with Enterococcal Spondylitis History
Cited by: 3
Author(s): Julia Hankel, Björn Bodmann, Matthias Todte, Eric Galvez, Till Strowig, Dimitri Radko, Ali Antakli, Christian Visscher
Software Mentions: 2
Published: over 3 years ago

10.3390/pathogens9050383

Influence of the FIV Status and Chronic Gingivitis on Feline Oral Microbiota
Cited by: 12
Author(s): Caitlin E. Older, Márcia de Oliveira Sampaio Gomes, Aline Rodrigues Hoffmann, Mariel Dalmédico Policano, Camila Aparecida Cruz dos Reis, Adriano Bonfim Carregaro, Carlos Eduardo Ambrósio, Valéria Maria Lara Carregaro
Software Mentions: 2
Published: over 4 years ago

10.1007/s00253-019-10235-0

Bryophytes and the symbiotic microorganisms, the pioneers of vegetation restoration in karst rocky desertification areas in southwestern China
Cited by: 23
Author(s): Wei Cao, Yingfei Xiong, De-Gang Zhao, Hao Tan, Jiaojiao Qu
Software Mentions: 2
Published: almost 5 years ago

10.3390/pathogens10080941

A Pilot Study on the Microbiome of Amblyomma hebraeum Tick Stages Infected and Non-Infected with Rickettsia africae
Cited by: 3
Author(s): Dalicia Kisten, Jory Brinkerhoff, Selaelo Ivy Tshilwane, Samson Mukaratirwa
Software Mentions: 2
Published: over 3 years ago

10.1007/s00253-021-11252-8

Impact of a fermented soy beverage supplemented with acerola by-product on the gut microbiota from lean and obese subjects using an in vitro model of the human colon
Cited by: 13
Author(s): A. D. S. Vieira, Carlota Bussolo de Souza, Marina Padilha, Erwin G. Zoetendal, Hauke Smidt, Susana Marta Isay Saad, Koen Venema
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2018.00213

Body Mass Index and Sex Affect Diverse Microbial Niches within the Gut
Cited by: 79
Author(s): Francesca Borgo, Stefania Garbossa, Alessandra Riva, Marco Severgnini, Carmelo Luigiano, Albero Benetti, Antonio E. Pontiroli, Giulia Morace, Elisa Borghi
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2016.00689

Metagenomic Analysis of the Rumen Microbiome of Steers with Wheat-Induced Frothy Bloat
Cited by: 65
Author(s): Dipti Pitta, W. E. Pinchak, Nagaraju Indugu, Bonnie Vecchiarelli, Rohini Sinha, J. D. Fulford
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2019.00088

Shift in Bacterial Community Structure Drives Different Atrazine-Degrading Efficiencies
Cited by: 15
Author(s): Xiaowei Liu, Kai Chen, Shaochuang Chuang, Xihui Xu, Jiandong Jiang
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12989-021-00400-7

Diesel exhaust particles alter the profile and function of the gut microbiota upon subchronic oral administration in mice
Cited by: 15
Author(s): Sybille van den Brûle, Margaux Rappe, Jérôme Ambroise, Caroline Bouzin, Chantal Dessy, Adrien Paquot, Giulio G. Muccioli, Dominique Lison
Software Mentions: 2
Published: almost 4 years ago

10.3389/fmicb.2020.01938

Distinct Temporal Succession of Bacterial Communities in Early Marine Biofilms in a Portuguese Atlantic Port
Cited by: 26
Author(s): Jorge T. Antunes, António G G Sousa, Joana Azevedo, Adriana Rego, Pedro N. Leão, Vítor Vasconcelos
Software Mentions: 2
Published: over 4 years ago

10.1186/s13071-016-1926-2

Triatomine bugs, their microbiota and Trypanosoma cruzi: asymmetric responses of bacteria to an infected blood meal
Cited by: 44
Author(s): Sebastián Pérez Díaz, Bianca Villavicencio, Nathália Cordeiro Correia, Jane Costa, Karen Luisa Haag
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2019.00797

Characterization of the Early Life Microbiota Development and Predominant Lactobacillus Species at Distinct Gut Segments of Low- and Normal-Birth-Weight Piglets
Cited by: 37
Author(s): Na Li, Shimeng Huang, Lili Jiang, Zhaolai Dai, Tiantian Li, Dandan Han, Junjun Wang
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2021.672656

The Abundance of the nifH Gene Became Higher and the nifH-Containing Diazotrophic Bacterial Communities Changed During Primary Succession in the Hailuogou Glacier Chronosequence, China
Cited by: 3
Author(s): Yingyan Wang, Yulan Chen, Qinyu Xue, Quanju Xiang, Ke Zhao, Xiumei Yu, Qiang Chen, Menggen Ma, Hao Jiang, Xiaoping Zhang, Petri Penttinen, Yunfu Gu
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2016.00214

Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?
Cited by: 427
Author(s): Emily B. Graham, Joseph E. Knelman, Andreas Schindlbacher, Steven D. Siciliano, Marc Breulmann, Anthony C. Yannarell, J. Michael Beman, Guy C. J. Abell, Laurent Philippot, James I. Prosser, Arnaud Foulquier, Jorge Curiel Yuste, Helen Glanville, Davey L. Jones, Roey Angel, Jani Salminen, Ryan J. Newton, Helmut Bürgmann, Lachlan J. Ingram, Ute Hamer, Henri Siljanen, Krista Peltoniemi, Karin Potthast, Lluís Bañeras, Martin Hartmann, Samiran Banerjee, Ri Qing Yu, Géraldine Nogaro, Andreas Richter, Marianne Koranda, Sarah C. Castle, Marta Goberna, Bongkeun Song, Amitava Chatterjee, Olga C. Nunes, Ana Rita Lopes, Yiping Cao, Aurore Kaisermann, Sara Hallin, Michael S. Strickland, Jordi Garcia‐Pausas, Josep Barba, Hojeong Kang, Kazuo Isobe, Sokratis Papaspyrou, Roberta Pastorelli, Alessandra Lagomarsino, Eva S. Lindström, Nathan Basiliko, Diana R. Nemergut
Software Mentions: 2
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10.1186/s13071-020-04565-6

Morphological identification of ticks and molecular detection of tick-borne pathogens from bare-nosed wombats (Vombatus ursinus)
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10.1128/AEM.00842-21

Long-Term Biocide Efficacy and Its Effect on a Souring Microbial Community
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Author(s): Xiang Shi, Daiane Aparecida Francisco de Oliveira, Lea Holsten, Katrin Steinhauer, Júlia R. de Rezende
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10.1186/s13071-018-2858-9

Equine strongyle communities are constrained by horse sex and species dipersal-fecundity trade-off
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10.3389/fmicb.2016.01368

Fungal Assemblages in Different Habitats in an Erman’s Birch Forest
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10.3389/fmicb.2020.02081

Cross-Stress Adaptation in a Piezophilic and Hyperthermophilic Archaeon From Deep Sea Hydrothermal Vent
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Author(s): Weishu Zhao, Xiao‐Pan Ma, Xiaoxia Liu, Huahua Jian, Yu Zhang, Xiang Xiao
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10.1128/AEM.02914-20

Monitoring Microbial Populations and Antibiotic Resistance Gene Enrichment Associated with Arctic Waste Stabilization Ponds
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A comparative assessment of adult mosquito trapping methods to estimate spatial patterns of abundance and community composition in southern Africa
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10.1186/s13071-016-1495-4

Ecological characterization and molecular differentiation of Culex pipiens complex taxa and Culex torrentium in eastern Austria
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10.1186/s13071-016-1865-y

Searching for putative avian malaria vectors in a Seasonally Dry Tropical Forest in Brazil
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Software Mentions: 2
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10.3389/fmicb.2019.02583

Global Distribution of Anaerobic Ammonia Oxidation (Anammox) Bacteria – Field Surveys in Wetland, Dryland, Groundwater Aquifer and Snow
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10.3389/fmicb.2015.01454

Bacterial Composition and Survival on Sahara Dust Particles Transported to the European Alps
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10.3389/fmicb.2014.00703

High temporal and spatial diversity in marine RNA viruses implies that they have an important role in mortality and structuring plankton communities
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10.1007/s00436-020-06906-x

Helminth diversity in Pimelodus blochii Valenciennes, 1840 (Osteichthyes: Pimelodidae) in two Amazon Rivers
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10.1017/S0031182021000780

Conspecific migration and environmental setting determine parasite infracommunities of non-migratory individual fish.
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Author(s): Eloïse C. Rochat, Jakob Brodersen, Isabel Blasco‐Costa
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10.1111/zph.12212

The Perceived Value of Passive Animal Health Surveillance: The Case of Highly Pathogenic Avian Influenza in<scp>V</scp>ietnam
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10.1186/s40851-018-0088-9

DNA metabarcoding of spiders, insects, and springtails for exploring potential linkage between above- and below-ground food webs
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10.1128/mSphere.00991-20

Effects of Seasonal Anoxia on the Microbial Community Structure in Demosponges in a Marine Lake in Lough Hyne, Ireland
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10.24272/j.issn.2095-8137.2018.042

晚第四纪环境变化对蒙古国长尾黄鼠分化的影响
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10.3389/fmicb.2017.00385

Differences in Ureolytic Bacterial Composition between the Rumen Digesta and Rumen Wall Based on ureC Gene Classification
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10.3389/fmicb.2017.00574

Characterization of Unexplored Deadwood Mycobiome in Highly Diverse Subtropical Forests Using Culture-independent Molecular Technique
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10.3389/fmicb.2018.00170

Community Composition of Nitrous Oxide-Related Genes in Salt Marsh Sediments Exposed to Nitrogen Enrichment
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10.3389/fmicb.2012.00404

Enriched Iron(III)-Reducing Bacterial Communities are Shaped by Carbon Substrate and Iron Oxide Mineralogy
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10.1128/AEM.00610-16

Contribution of Vegetation to the Microbial Composition of Nearby Outdoor Air
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10.3389/fpls.2020.00088

Effects of Pest Management Practices on Soil Nematode Abundance, Diversity, Metabolic Footprint and Community Composition Under Paddy Rice Fields
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10.1128/AEM.02769-19

Dissemination of Quinolone-Resistant Escherichia coli in the Norwegian Broiler and Pig Production Chains and Possible Persistence in the Broiler Production Environment
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