Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: vegan

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/vegan

Community Ecology Package
87 versions
Latest release: about 2 years ago
202 dependent packages
91,351 downloads last month

Papers Mentioning vegan 6,903

10.1128/mBio.00568-19
Experimental Evidence that Stochasticity Contributes to Bacterial Composition and Functioning in a Decomposer Community
Cited by: 19
Author(s): Michaeline B. N. Albright, Alexander B. Chase, Jennifer B. H. Martiny
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0186125
A question of data quality—Testing pollination syndromes in Balsaminaceae
Cited by: 18
Author(s): Stefan Abrahamczyk, Sissi Lozada‐Gobilard, Markus Ackermann, Eberhard Fischer, Vera Krieger, Almut Redling, Maximilian Weigend
Software Mentions: 2
Published: about 7 years ago
10.1371/journal.pone.0134752
Enrichment and Broad Representation of Plant Biomass-Degrading Enzymes in the Specialized Hyphal Swellings of Leucoagaricus gongylophorus, the Fungal Symbiont of Leaf-Cutter Ants
Cited by: 25
Author(s): Frank O. Aylward, Lily Khadempour, Daniel M. Tremmel, Bradon R. McDonald, Carrie Nicora, Si Wu, Ronald J. Moore, Daniel J. Orton, Matthew E. Monroe, Paul Piehowski, Samuel O. Purvine, Richard Smith, Mary Lipton, Kristin Burnum-Johnson, Cameron R. Currie
Software Mentions: 2
Published: over 9 years ago
10.1186/s12866-019-1601-9
Diet is not the primary driver of bacterial community structure in the gut of litter-feeding cockroaches
Cited by: 21
Author(s): Niclas Lampert, Aram Mikaelyan, Andreas Brune
Software Mentions: 2
Published: about 5 years ago
10.1371/journal.pone.0222470
Investigating the dispersal of antibiotic resistance associated genes from manure application to soil and drainage waters in simulated agricultural farmland systems
Cited by: 19
Author(s): Schuyler D. Smith, Phillip Colgan, Fan Yang, Elizabeth L. Rieke, Michelle L. Soupir, Thomas B. Moorman, Heather K. Allen, Adina Howe
Software Mentions: 2
Published: about 5 years ago
10.1371/journal.pone.0180260
Taxon abundance, diversity, co-occurrence and network analysis of the ruminal microbiota in response to dietary changes in dairy cows
Cited by: 65
Author(s): Ilma Tapio, Daniel Fischer, Lucía Blasco, Miika Tapio, Robert John Wallace, Ali Bayat, Laura Ventto, Minna Kahala, Enyew Negussie, Kevin J. Shingfield, Johanna Vilkki
Software Mentions: 2
Published: over 7 years ago
10.1111/eva.13139
Reconciling seascape genetics and fisheries science in three codistributed flatfishes
Cited by: 4
Author(s): Sara Vandamme, Joost Raeymaekers, Grégory E. Maes, Karl Cottenie, Federico C. F. Calboli, Eveline Diopere, Filip A. M. Volckaert
Software Mentions: 2
Published: about 4 years ago
10.1111/eva.13061
Functional genetic diversity of domestic and wild American mink (<i>Neovison vison</i>)
Cited by: 8
Author(s): Kimberley Y. Morris, Jeff Bowman, Albrecht I. Schulte‐Hostedde, Paul J. Wilson
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0153713
The Value of Long-Term Stream Invertebrate Data Collected by Citizen Scientists
Cited by: 11
Author(s): Patrick Michael Edwards
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0237599
Characterization of an acid rock drainage microbiome and transcriptome at the Ely Copper Mine Superfund site
Cited by: 6
Author(s): Lesley-Ann Giddings, George E. Chlipala, Kevin Kunstman, Stefan J. Green, Katherine Morillo, Kieran Bhave, Holly Peterson, Heather Driscoll, Mark Maienschein‐Cline
Software Mentions: 2
Published: over 4 years ago
10.1111/eva.12923
Multiple decades of stocking has resulted in limited hatchery introgression in wild brook trout (<i>Salvelinus fontinalis</i>) populations of Nova Scotia
Cited by: 12
Author(s): Sarah J. Lehnert, Shauna M. Baillie, John L. MacMillan, Ian G. Paterson, Colin F. Buhariwalla, Ian Bradbury, Paul Bentzen
Software Mentions: 2
Published: almost 5 years ago
10.1111/eva.12479
Population genetic and field‐ecological analyses return similar estimates of dispersal over space and time in an endangered amphibian
Cited by: 17
Author(s): Ian Wang, H. Bradley Shaffer
Software Mentions: 2
Published: over 7 years ago
10.1002/evl3.83
Competitive species interactions constrain abiotic adaptation in a bacterial soil community
Cited by: 31
Author(s): James P. J. Hall, Ellie Harrison, Michael A. Brockhurst
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pone.0103115
Microbial Diversity in Hummock and Hollow Soils of Three Wetlands on the Qinghai-Tibetan Plateau Revealed by 16S rRNA Pyrosequencing
Cited by: 54
Author(s): Yangfan Deng, Xiaoyong Cui, Marcela Hernández, Marc G. Dumont
Software Mentions: 2
Published: over 10 years ago
10.1128/mBio.00839-19
New Insights into the Intrinsic and Extrinsic Factors That Shape the Human Skin Microbiome
Cited by: 92
Author(s): Pedro A. Dimitriu, Brandon C. Iker, Kausar Malik, Hilary Leung, William W. Mohn, Greg G. Hillebrand
Software Mentions: 2
Published: over 5 years ago
10.1007/s10493-020-00587-y
Patterns of intraspecific morphological variability in soil mites reflect their dispersal ability
Cited by: 1
Author(s): Julia Baumann
Software Mentions: 2
Published: almost 4 years ago
10.1371/journal.pone.0178559
Distribution and diversity of aquatic macroinvertebrate assemblages in a semi-arid region earmarked for shale gas exploration (Eastern Cape Karoo, South Africa)
Cited by: 28
Author(s): Annah Mabidi, Matthew S. Bird, Renzo Perissinotto
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pone.0193578
Maternal DNA lineages at the gate of Europe in the 10th century AD
Cited by: 8
Author(s): Ioana Rusu, Alessandra Modi, Stefania Vai, Elena Pilli, Cristina Mircea, Claudia Radu, Claudia Urduzia, Zeno Karl Pinter, Vitalie Bodolică, Cătălin Dobrinescu, Montserrat Hervella, Octavian Popescu, Martina Lari, David Caramelli, Beatrice Kelemen
Software Mentions: 2
Published: over 6 years ago
10.1186/s12866-020-01895-4
Characterization of the bacterial communities of psyllids associated with Rutaceae in Bhutan by high throughput sequencing
Cited by: 19
Author(s): Jennifer L. Morrow, Namgay Om, G. A. C. Beattie, Grant Chambers, N. J. Donovan, L. W. Liefting, Markus Riegler, Paul Holford
Software Mentions: 2
Published: over 4 years ago
10.1128/mBio.01977-19
Comparative Genomics of Antibiotic-Resistant Uropathogens Implicates Three Routes for Recurrence of Urinary Tract Infections
Cited by: 56
Author(s): Robert Thänert, Kimberly A. Reske, Tiffany Hink, Meghan A. Wallace, Bin Wang, Drew J. Schwartz, Sondra Seiler, Candice Cass, Carey‐Ann D. Burnham, Erik R. Dubberke, Jennie H. Kwon, Gautam Dantas
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0156578
Can Nocturnal Flight Calls of the Migrating Songbird, American Redstart, Encode Sexual Dimorphism and Individual Identity?
Cited by: 10
Author(s): Emily T. Griffiths, Sara Keen, Michael Lanzone, Andrew Farnsworth
Software Mentions: 2
Published: over 8 years ago
10.3390/nu13093290
Gut Microbiota Predicts Healthy Late-Life Aging in Male Mice
Cited by: 5
Author(s): Shanlin Ke, Sarah J. Mitchell, Michael R. MacArthur, Alice E. Kane, David Sinclair, Emily M. Venable, Katia S. Chadaideh, Rachel N. Carmody, Francine Grodstein, James R. Mitchell, Yangyu Liu
Software Mentions: 2
Published: about 3 years ago
10.12688/f1000research.4831.1
FALCON: a software package for analysis of nestedness in bipartite networks
Cited by: 31
Author(s): Stephen J. Beckett, Chris A. Boulton, Hywel T. P. Williams
Software Mentions: 2
Published: over 10 years ago
10.3390/ani10050882
Understanding Temporal Social Dynamics in Zoo Animal Management: An Elephant Case Study
Cited by: 3
Author(s): Ellen Williams, Samantha Bremner‐Harrison, Carol Hall, Anne Carter
Software Mentions: 2
Published: over 4 years ago
10.1096/fj.202000042R
The early life microbiota protects neonatal mice from pathological small intestinal epithelial cell shedding
Cited by: 23
Author(s): Kevin R. Hughes, Zoe Schofield, Matthew J. Dalby, Shabhonam Caim, Lisa Chalklen, Federico Bernuzzi, Cristina Alcon-Giner, Gwénaëlle Le Gall, Alastair Watson, Lindsay J. Hall
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0127959
The Interplay between Environmental Filtering and Spatial Processes in Structuring Communities: The Case of Neotropical Snake Communities
Cited by: 12
Author(s): Hamanda B. Cavalheri, Camila Both, Marcio Roberto Martins
Software Mentions: 2
Published: over 9 years ago
10.1128/mBio.02242-19
Vaginal Biomarkers That Predict Cervical Length and Dominant Bacteria in the Vaginal Microbiomes of Pregnant Women
Cited by: 32
Author(s): Steven S. Witkin, Antônio Fernandes Moron, Benjamin J. Ridenhour, Evelyn Minis, Alan Roberto Hatanaka, Stéphanno Gomes Pereira Sarmento, Marcelo Santucci França, Francisco Herlânio Costa Carvalho, Tatiana Emy Nishimoto Kawanami Hamamoto, Rosiane Mattar, Éster Cerdeira Sabino, Iara M. Linhares, Marilza Vieira Cunha Rudge, Larry J. Forney
Software Mentions: 2
Published: about 5 years ago
10.1093/femsec/fiy127
Effect of spatial origin and hydrocarbon composition on bacterial consortia community structure and hydrocarbon biodegradation rates
Cited by: 25
Author(s): Lloyd D. Potts, Luis J Perez Calderon, Evangelia Gontikaki, Lehanne Keith, Cécile Gubry‐Rangin, James A. Anderson, Ursula Witte
Software Mentions: 2
Published: over 6 years ago
10.1186/s12866-019-1689-y
Long-term impact of fecal transplantation in healthy volunteers
Cited by: 44
Author(s): Oleg V. Goloshchapov, Evgenii I. Olekhnovich, С В Сидоренко, Ivan S. Moiseev, Maxim A. Kucher, Dmitry E. Fedorov, Alexander V. Pavlenko, Alexander I. Manolov, Vladimir Gostev, Vladimir A. Veselovsky, Ksenia M. Klimina, Elena S. Kostryukova, Evgeny Bakin, Alexander N. Shvetcov, Э. Д. Гумбатова, Ruslana V. Klementeva, А. А. Щербаков, М. В. Горчакова, Juan José Egozcue, Vera Pawlowsky‐Glahn, Maria A. Suvorova, А. Б. Чухловин, Vadim M. Govorun, Elena N. Ilina, Boris Afanasyev
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pone.0018520
A Snapshot of the Population Structure of Branchiostoma lanceolatum in the Racou Beach, France, during Its Spawning Season
Cited by: 14
Author(s): Yves Desdevises, Vincent Maillet, Michaël Fuentès, Héctor Escrivá
Software Mentions: 2
Published: over 13 years ago
10.1371/journal.pone.0205260
Effects of climatically-modulated changes in solar radiation and wind speed on spring phytoplankton community dynamics in Lake Taihu, China
Cited by: 13
Author(s): Jianming Deng, Wei Zhang, Boqiang Qin, Yunlin Zhang, Hans W. Paerl, Nico Salmaso
Software Mentions: 2
Published: about 6 years ago
10.1093/femsec/fiaa140
Methanotroph populations and CH4 oxidation potentials in high-Arctic peat are altered by herbivory induced vegetation change
Cited by: 9
Author(s): Edda Marie Rainer, Christophe V. W. Seppey, Alexander Tøsdal Tveit, Mette M. Svenning
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0161082
Tropical Estuarine Macrobenthic Communities Are Structured by Turnover Rather than Nestedness
Cited by: 24
Author(s): Carlinda Raílly Medeiros, Luiz Ubiratan Hepp, Joana Patrício, Joseline Molozzi
Software Mentions: 2
Published: about 8 years ago
10.1371/journal.pone.0124979
Cephalic and Limb Anatomy of a New Isoxyid from the Burgess Shale and the Role of “Stem Bivalved Arthropods” in the Disparity of the Frontalmost Appendage
Cited by: 42
Author(s): Cédric Aria, Jean‐Bernard Caron
Software Mentions: 2
Published: over 9 years ago
10.1093/femsec/fiaa102
Enhanced microbial degradation of irradiated cellulose under hyperalkaline conditions
Cited by: 7
Author(s): Naji M. Bassil, Joe S. Small, Jonathan R. Lloyd
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0230577
Bacterial community composition of vermicompost-treated tomato rhizospheres
Cited by: 5
Author(s): Juana Muñoz-Ucros, Kevin Panke-Buisse, Jamison T. Robe
Software Mentions: 2
Published: over 4 years ago
10.3389/fmed.2020.00396
Vital Members in the More Dysbiotic Oropharyngeal Microbiotas in H7N9-Infected Patients
Cited by: 6
Author(s): Hua Zha, Haifeng Lü, Jieyun Wu, Kevin Chang, Qiangqiang Wang, Hua Zhang, Jinyou Li, Qixia Luo, Yao Lu
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0086613
Intraspecific Variation in Cellular and Biochemical Heat Response Strategies of Mediterranean Xeropicta derbentina [Pulmonata, Hygromiidae]
Cited by: 17
Author(s): Sandra Troschinski, Maddalena Angela Di Lellis, S. V. Sereda, Torsten Hauffe, Thomas Wilke, Rita Triebskorn, Heinz‐R. Köhler
Software Mentions: 2
Published: almost 11 years ago
10.1371/journal.pone.0114458
Fourier Transform Infrared with Attenuated Total Reflectance Applied to the Discrimination of Freshwater Planktonic Coccoid Green Microalgae
Cited by: 5
Author(s): Guilherme Pavan de Moraes, Armando Augusto Henriques Vieira
Software Mentions: 2
Published: almost 10 years ago
10.1186/s12866-016-0660-4
Changes of diet and dominant intestinal microbes in farmland frogs
Cited by: 57
Author(s): Chun Wen Chang, Bing Huang, Si Min Lin, C. C. Huang, Pei Chun Liao
Software Mentions: 2
Published: over 8 years ago
10.3389/fmicb.2021.674411
Geographical Distribution of Iron Redox Cycling Bacterial Community in Peatlands: Distinct Assemble Mechanism Across Environmental Gradient
Cited by: 4
Author(s): Liang Yang, Ming Jiang, Yuanchun Zou, Lei Qin, Yingyi Chen
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0055661
The Soundscapes of Lakes across an Urbanization Gradient
Cited by: 31
Author(s): Lauren M. Kuehne, Britta L. Padgham, Julian D. Olden
Software Mentions: 2
Published: almost 12 years ago
10.3389/fmicb.2017.01578
Community Structure of Lithotrophically-Driven Hydrothermal Microbial Mats from the Mariana Arc and Back-Arc
Cited by: 18
Author(s): Kyle R. Hager, Heather Fullerton, D. A. Butterfield, Craig L. Moyer
Software Mentions: 2
Published: over 7 years ago
10.3389/fmicb.2016.00666
Superimposed Pristine Limestone Aquifers with Marked Hydrochemical Differences Exhibit Distinct Fungal Communities
Cited by: 19
Author(s): Ali Nawaz, Witoon Purahong, Robert Lehmann, Martina Herrmann, Kirsten Küsel, Kai Uwe Totsche, François Buscot, Tesfaye Wubet
Software Mentions: 2
Published: over 8 years ago
10.3389/fmicb.2020.595427
Diversity and Geographic Distribution of Ligninolytic Fungi Associated With Castanopsis sieboldii Leaf Litter in Japan
Cited by: 6
Author(s): Takashi Osono, Shiro Matsuoka, Dai Hirose
Software Mentions: 2
Published: about 4 years ago
10.3389/fmicb.2017.01028
Ecological Succession Pattern of Fungal Community in Soil along a Retreating Glacier
Cited by: 33
Author(s): Jianqing Tian, Yuchen Qiao, Ben‐Lai Wu, Huai Chen, Wei Li, Na Jiang, Xiaoling Zhang, Xingzhong Liu
Software Mentions: 2
Published: over 7 years ago
10.3389/fmicb.2016.01278
Spatio-Temporal Variation of Core and Satellite Arbuscular Mycorrhizal Fungus Communities in Miscanthus giganteus
Cited by: 19
Author(s): Christopher J. Barnes, Caitlin A. Burns, Christopher J. van der Gast, Niall P. McNamara, Gary D. Bending
Software Mentions: 2
Published: over 8 years ago
10.3389/fmicb.2016.00773
Evaluation of Strategies to Separate Root-Associated Microbial Communities: A Crucial Choice in Rhizobiome Research
Cited by: 46
Author(s): Tim Richter-Heitmann, Thilo Eickhorst, Stefan Knauth, Michael W. Friedrich, Hannes Schmidt
Software Mentions: 2
Published: over 8 years ago
10.3389/fmicb.2021.657542
Effects of Clostridium butyricum, Sodium Butyrate, and Butyric Acid Glycerides on the Reproductive Performance, Egg Quality, Intestinal Health, and Offspring Performance of Yellow-Feathered Breeder Hens
Cited by: 16
Author(s): Yibing Wang, Yang Wang, Xuhui Lin, Zhongyong Gou, Qiuli Fan, Sufei Jiang
Software Mentions: 2
Published: about 3 years ago
10.3389/fmicb.2017.01231
Aquarium Viromes: Viromes of Human-Managed Aquatic Systems
Cited by: 26
Author(s): Yiseul Kim, William Van Bonn, Tiong Gim Aw, Joan B. Rose
Software Mentions: 2
Published: over 7 years ago
10.3389/fmicb.2019.01821
Community Composition and Diversity of Intestinal Microbiota in Captive and Reintroduced Przewalski’s Horse (Equus ferus przewalskii)
Cited by: 22
Author(s): Yimeng Li, Ke Zhang, Yang Liu, Kai Li, Defu Hu, Torsten Wronski
Software Mentions: 2
Published: over 5 years ago
10.3389/fmicb.2019.00168
Rapid Transfer of Plant Photosynthates to Soil Bacteria via Ectomycorrhizal Hyphae and Its Interaction With Nitrogen Availability
Cited by: 88
Author(s): Stefan Gorka, Marlies Dietrich, Werner Mayerhofer, Raphael Gabriel, Julia Wiesenbauer, Victoria Martin, Qing Zheng, Bruna Imai, Judith Prommer, Marieluise Weidinger, Peter Schweiger, Stephanie A. Eichorst, Michael Wagner, Andreas Richter, Arno Schintlmeister, Dagmar Woebken, Christina Kaiser
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pone.0181720
Main predictors of periphyton species richness depend on adherence strategy and cell size
Cited by: 24
Author(s): Vanessa Majewski Algarte, Tadeu Siqueira, Victor Lemes Landeiro, Liliana Rodrigues, Cláudia Cósta Bonecker, Luzia Cleide Rodrigues, Natália Fernanda Santana, Rosemara Fugi, Luis Maurício Bini
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pone.0135928
Plant Size as Determinant of Species Richness of Herbivores, Natural Enemies and Pollinators across 21 Brassicaceae Species
Cited by: 38
Author(s): Hella Schlinkert, Catrin Westphal, Yann Clough, Zsuzsanna László, Martin Ludwig, Teja Tscharntke
Software Mentions: 2
Published: over 9 years ago
10.1128/mBio.00569-20
Effects of Genetic and Physiological Divergence on the Evolution of a Sulfate-Reducing Bacterium under Conditions of Elevated Temperature
Cited by: 5
Author(s): Megan L. Kempher, Xuanyu Tao, Rong Song, Bo Wu, David A. Stahl, Judy D. Wall, Adam P. Arkin, Aifen Zhou, Jizhong Zhou
Software Mentions: 2
Published: over 4 years ago
10.1186/s12866-020-01871-y
Cow manure application effectively regulates the soil bacterial community in tea plantation
Cited by: 28
Author(s): Shuning Zhang, Litao Sun, Yu Wang, Kai Fan, Qingshan Xu, Yusheng Li, Qingping Ma, Wang Ji-guo, Wanming Ren, Zhaotang Ding
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0037741
Who Eats Whom in a Pool? A Comparative Study of Prey Selectivity by Predatory Aquatic Insects
Cited by: 88
Author(s): Jan Klečka, David S. Boukal
Software Mentions: 2
Published: over 12 years ago
10.3389/fmicb.2016.00371
Mucus Sugar Content Shapes the Bacterial Community Structure in Thermally Stressed Acropora muricata
Cited by: 62
Author(s): Sonny T. M. Lee, Simon K. Davy, Sen‐Lin Tang, Paul S. Kench
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0111043
Hydrostatic Pressure and Temperature Effects on the Membranes of a Seasonally Migrating Marine Copepod
Cited by: 32
Author(s): David W. Pond, Geraint A. Tarling, Daniel J. Mayor
Software Mentions: 2
Published: about 10 years ago
10.1371/journal.pone.0137401
Cloacal Microbiome Structure in a Long-Distance Migratory Bird Assessed Using Deep 16sRNA Pyrosequencing
Cited by: 65
Author(s): Jakub Kreisinger, Dagmar Čížková, Lucie Kropáčková, Tomáš Albrecht
Software Mentions: 2
Published: about 9 years ago
10.1186/s12866-020-01901-9
Examining the relationship between maternal body size, gestational glucose tolerance status, mode of delivery and ethnicity on human milk microbiota at three months post-partum
Cited by: 19
Author(s): Lauren LeMay-Nedjelski, James Butcher, Sylvia H. Ley, Michelle R. Asbury, Anthony J. Hanley, Alex Kiss, Sharon Unger, John W. Copeland, Pauline W. Wang, Bernard Zinman, Alain Stintzi, Deborah L. O’Connor
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0208986
Determining diet from faeces: Selection of metabarcoding primers for the insectivore Pyrenean desman (Galemys pyrenaicus)
Cited by: 19
Author(s): Amaiur Esnaola, Aitor Arrizabalaga‐Escudero, Jorge González‐Esteban, Arturo Elosegi, Joxerra Aihartza
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pone.0189388
Persistent differences between coastal and offshore kelp forest communities in a warming Gulf of Maine
Cited by: 18
Author(s): Jon D. Witman, Robert W. Lamb
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pone.0153420
Ant Diversity and Distribution along Elevation Gradients in the Australian Wet Tropics: The Importance of Seasonal Moisture Stability
Cited by: 40
Author(s): Somayeh Nowrouzi, Alan N. Andersen, Sarina Macfadyen, Kyran M. Staunton, Jeremy VanDerWal, Simon K. A. Robson
Software Mentions: 2
Published: over 8 years ago
10.1186/1471-2180-12-25
Influence of wet distillers grains diets on beef cattle fecal bacterial community structure
Cited by: 47
Author(s): W. C. Rice, M. L. Galyean, Stephen B. Cox, Scot E. Dowd, N. A. Cole
Software Mentions: 2
Published: almost 13 years ago
10.3389/fmicb.2020.01562
The Beta-Diversity of Siganus fuscescens-Associated Microbial Communities From Different Habitats Increases With Body Weight
Cited by: 7
Author(s): Yongjie Wu, Fanshu Xiao, Cheng Wang, Longfei Shu, Xiaoming Zheng, Kui Xu, Xiaoli Yu, Keke Zhang, Hongtian Luo, Zhili He, Qingyun Yan
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0165206
Key Microbiota Identification Using Functional Gene Analysis during Pepper (Piper nigrum L.) Peeling
Cited by: 0
Author(s): Jiachao Zhang, Qisong Hu, Chang Xu, Sixin Liu, Congfa Li
Software Mentions: 2
Published: about 8 years ago
10.1128/mBio.00294-21
Effect of HIV/HAART and Other Clinical Variables on the Oral Mycobiome Using Multivariate Analyses
Cited by: 13
Author(s): Paul L. Fidel, Zach A. Thompson, Elizabeth A. Lilly, Carolina Granada, Kelly Treas, Kenneth R. DuBois, Laura Cook, Shahr B. Hashmi, Daniel J. Lisko, Chiranjit Mukherjee, José Antonio Vázquez, Michael E. Hagensee, Ann L. Griffen, Eugene J. Leys, Clifford J. Beall
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0004522
Avian Incubation Inhibits Growth and Diversification of Bacterial Assemblages on Eggs
Cited by: 82
Author(s): Matthew D. Shawkey, Mary K. Firestone, Eoin L. Brodie, Steven R. Beissinger
Software Mentions: 2
Published: almost 16 years ago
10.3389/fmicb.2017.01042
Co-registered Geochemistry and Metatranscriptomics Reveal Unexpected Distributions of Microbial Activity within a Hydrothermal Vent Field
Cited by: 18
Author(s): H. C. Olins, Daniel R. Rogers, Christina M. Preston, William Ussler, Douglas Pargett, Scott Jensen, Brent Roman, James M. Birch, Christopher A. Scholin, Mohamed Fauzi Haroon, Peter R. Girguis
Software Mentions: 2
Published: over 7 years ago
10.1186/s12866-020-01745-3
Effects of aging on the quality of roasted sesame-like flavor Daqu
Cited by: 15
Author(s): Guangsen Fan, Zhaohui Fu, Teng Chen, Pengxiao Liu, Qiuhua Wu, Md Khondakar Raziur Rahman, Xiuting Li
Software Mentions: 2
Published: over 4 years ago
10.1186/s12866-016-0748-x
Bacteria and Archaea diversity within the hot springs of Lake Magadi and Little Magadi in Kenya
Cited by: 78
Author(s): Anne Kelly Kambura, Romano Mwirichia, Remmy Kasili, Edward Nderitu Karanja, Huxley Mae Makonde, Hamadi Iddi Boga
Software Mentions: 2
Published: over 8 years ago
10.1186/s12866-014-0316-1
Comparative analysis of the human saliva microbiome from different climate zones: Alaska, Germany, and Africa
Cited by: 119
Author(s): Jing Li, Dominique Quinque, Hans-Peter Horz, Mingkun Li, Margarita Rzhetskaya, Jennifer Raff, M. Geoffrey Hayes, Mark Stoneking
Software Mentions: 2
Published: almost 10 years ago
10.3389/fmicb.2015.00731
A flexible and economical barcoding approach for highly multiplexed amplicon sequencing of diverse target genes
Cited by: 129
Author(s): Craig W. Herbold, Claus Pelikan, Orest Kuzyk, Bela Hausmann, Roey Angel, David Berry, Alexander Loy
Software Mentions: 2
Published: over 9 years ago
10.3389/fmicb.2015.00370
Estimating and mapping ecological processes influencing microbial community assembly
Cited by: 482
Author(s): James C. Stegen, Lin X, Jim K. Fredrickson, Allan Konopka
Software Mentions: 2
Published: over 9 years ago
10.3389/fmicb.2017.01549
Variation of Oxygenation Conditions on a Hydrocarbonoclastic Microbial Community Reveals Alcanivorax and Cycloclasticus Ecotypes
Cited by: 20
Author(s): Fanny Terrisse, Cristiana Cravo‐Laureau, Cyril Noël, Christine Cagnon, Alex J. Dumbrell, Terry J. McGenity, Robert Duran
Software Mentions: 2
Published: over 7 years ago
10.3389/fmicb.2015.00336
Detection of multi-drug resistant Escherichia coli in the urban waterways of Milwaukee, WI
Cited by: 33
Author(s): Anthony D. Kappell, Maxwell S. DeNies, Neha Ahuja, Nathan A. Ledeboer, Ryan J. Newton, Krassimira R. Hristova
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pone.0126976
Bifidobacterium pseudocatenulatum CECT 7765 Reduces Obesity-Associated Inflammation by Restoring the Lymphocyte-Macrophage Balance and Gut Microbiota Structure in High-Fat Diet-Fed Mice
Cited by: 155
Author(s): Ángela Moya-Pérez, Alexander Neef, Yolanda Sanz
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pone.0168235
Assessing Caribbean Shallow and Mesophotic Reef Fish Communities Using Baited-Remote Underwater Video (BRUV) and Diver-Operated Video (DOV) Survey Techniques
Cited by: 44
Author(s): Dominic A. Andradi‐Brown, Consuelo Macaya-Solis, Dan A. Exton, Erika Gress, Georgina Wright, Alex D. Rogers
Software Mentions: 2
Published: almost 8 years ago
10.3389/fmicb.2018.03103
Effect of Acidic Industrial Effluent Release on Microbial Diversity and Trace Metal Dynamics During Resuspension of Coastal Sediment
Cited by: 29
Author(s): Hana Zouch, Léa Cabrol, Sandrine Chifflet, Marc Tedetti, Fatma Karray, Hatem Zaghden, Sami Sayadi, Marianne Quéméneur
Software Mentions: 2
Published: almost 6 years ago
10.3389/fmicb.2020.548607
Total Arsenic, pH, and Sulfate Are the Main Environmental Factors Affecting the Microbial Ecology of the Water and Sediments in Hulun Lake, China
Cited by: 13
Author(s): Yongquan Shang, Xiaoyang Wu, Qinguo Wei, Huashan Dou, Xibao Wang, Jun Chen, Huanxin Zhang, Shengchao Ma, Honghai Zhang
Software Mentions: 2
Published: about 4 years ago
10.3389/fmicb.2018.01985
Microbial Community and in situ Bioremediation of Groundwater by Nitrate Removal in the Zone of a Radioactive Waste Surface Repository
Cited by: 45
Author(s): Alexey Safonov, Т. Л. Бабич, Д. Ш. Соколова, Denis S. Grouzdev, T. P. Tourova, А. Б. Полтараус, Еlena V. Zakharova, Alexander Y. Merkel, А. П. Новиков, Т. Н. Назина
Software Mentions: 2
Published: over 6 years ago
10.1186/s12866-016-0845-x
The succession pattern of soil microbial communities and its relationship with tobacco bacterial wilt
Cited by: 37
Author(s): Jun Niu, Zhongwen Rang, Chao Zhang, Ching Ching Wu, Feng Tian, Huaqun Yin, Dai Linjian
Software Mentions: 2
Published: about 8 years ago
10.1186/s12866-018-1257-x
A metagenome-wide association study of gut microbiota in asthma in UK adults
Cited by: 71
Author(s): Qi Wang, Fĕi Li, Bishan Liang, Yuhu Liang, Sijie Chen, Xiao‐Dong Mo, Yanmei Ju, Hui Zhao, Huijue Jia, Timothy D. Spector, Hailiang Xie, Ruijin Guo
Software Mentions: 2
Published: about 6 years ago
10.3389/fmicb.2019.03012
Combined Application of High-Throughput Sequencing and Metabolomics Reveals Metabolically Active Microorganisms During Panxian Ham Processing
Cited by: 32
Author(s): Yu Mu, Wei Su, Yingchun Mu, Li Jiang
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pone.0163930
Associations between an Invasive Plant (Taeniatherum caput-medusae, Medusahead) and Soil Microbial Communities
Cited by: 13
Author(s): Elise S. Gornish, Noah Fierer, Albert Barberán
Software Mentions: 2
Published: about 8 years ago
10.1371/journal.pone.0190959
Soil microbial communities and enzyme activities in sea-buckthorn (Hippophae rhamnoides) plantation at different ages
Cited by: 29
Author(s): Miao Yang, Dan Yang, Xuan Yu
Software Mentions: 2
Published: almost 7 years ago
10.1186/1471-2334-14-498
Host cytokine responses distinguish invasive from airway isolates of the Streptococcusmilleri/anginosis group
Cited by: 3
Author(s): Julienne C. Kaiser, Chris P. Verschoor, Michael G. Surette, Dawn M. E. Bowdish
Software Mentions: 2
Published: about 10 years ago
10.1128/mSphere.00101-16
Active and Secretory IgA-Coated Bacterial Fractions Elucidate Dysbiosis in Clostridium difficile Infection
Cited by: 18
Author(s): Mária Džunková, Andrés Moya, Jorge F. Vázquez-Castellanos, Alejandro Artacho, Xinhua Chen, Ciarán P. Kelly, Giuseppe D’Auria
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0232329
Exploring the effect of plant substrates on bacterial community structure in termite fungus-combs
Cited by: 11
Author(s): Shiyou Liang, Chengpan Wang, Farhan Ahmad, Yin XueJie, Yin Hu, Jianchu Mo
Software Mentions: 2
Published: over 4 years ago
10.1128/mSphere.00069-15
Infant Gut Microbiota Development Is Driven by Transition to Family Foods Independent of Maternal Obesity
Cited by: 152
Author(s): Martin Frederik Laursen, Lars Peter Holst Andersen, Kim F. Michaelsen, Christian Mølgaard, Ellen Trolle, Martin Iain Bahl, Tine Rask Licht
Software Mentions: 2
Published: almost 9 years ago
10.1371/journal.pone.0148947
Omnivory of an Insular Lizard: Sources of Variation in the Diet of Podarcis lilfordi (Squamata, Lacertidae)
Cited by: 30
Author(s): Ana Pérez‐Cembranos, Alicia León, Valentı́n Pérez-Mellado
Software Mentions: 2
Published: almost 9 years ago
10.1371/journal.pone.0158897
GUTSS: An Alignment-Free Sequence Comparison Method for Use in Human Intestinal Microbiome and Fecal Microbiota Transplantation Analysis
Cited by: 9
Author(s): M. Brittnacher, Sonya L. Heltshe, Hillary S. Hayden, Matthew C. Radey, Eli Weiss, Christopher J. Damman, Timothy L. Zisman, David L. Suskind, Samuel I. Miller
Software Mentions: 2
Published: over 8 years ago
10.3389/fmicb.2017.00750
Microbial Community Response on Wastewater Discharge in Boreal Lake Sediments
Cited by: 22
Author(s): Jatta Saarenheimo, Sanni L. Aalto, Antti J. Rissanen, Marja Tiirola
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pone.0041938
Communities of Arbuscular Mycorrhizal Fungi Detected in Forest Soil Are Spatially Heterogeneous but Do Not Vary throughout the Growing Season
Cited by: 137
Author(s): John Davison, Maarja Öpik, Martin Zobel, Martti Vasar, Madis Metsis, Mari Moora
Software Mentions: 2
Published: over 12 years ago
10.3389/fmicb.2015.00427
Seasonal variation of bacterial endophytes in urban trees
Cited by: 54
Author(s): Shu Yi Shen, Roberta R. Fulthorpe
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pone.0175160
Nutrient enrichment is associated with altered nectar and pollen chemical composition in Succisa pratensis Moench and increased larval mortality of its pollinator Bombus terrestris L.
Cited by: 31
Author(s): Tobias Ceulemans, Eva Hulsmans, Wim Van den Ende, Olivier Honnay
Software Mentions: 2
Published: over 7 years ago
10.3389/fmicb.2021.703711
Multi-Omic Analysis of Symbiotic Bacteria Associated With Aedes aegypti Breeding Sites
Cited by: 8
Author(s): Katherine D. Mosquera, Luís Eduardo Martinez Villegas, Sacha J. Pidot, Chinhda Sharif, Sven Klimpel, Timothy P. Stinear, Luciano Andrade Moreira, Nicholas J. Tobias, Marcelo G. Lorenzo
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0097214
Changes in the Lung Microbiome following Lung Transplantation Include the Emergence of Two Distinct Pseudomonas Species with Distinct Clinical Associations
Cited by: 159
Author(s): Robert P. Dickson, John R. Erb-Downward, Christine M. Freeman, Neff Walker, Brittan S. Scales, James M. Beck, Fernando J. Martínez, Jeffrey L. Curtis, Vibha N. Lama, Gary B. Huffnagle
Software Mentions: 2
Published: over 10 years ago
10.1371/journal.pone.0169916
Diversity and composition of vaginal microbiota of pregnant women at risk for transmitting Group B Streptococcus treated with intrapartum penicillin
Cited by: 18
Author(s): Luiz Fernando Würdig Roesch, Rita de Cássia dos Santos Silveira, Andrea Corso, Priscila Caroline Thiago Dobbler, Volker Mai, Bruna Schafer Rojas, Álvaro Macedo Laureano, Renato S. Procianoy
Software Mentions: 2
Published: almost 8 years ago