10.3389/fmicb.2014.00096

Effects of different compost amendments on the abundance and composition of alkB harboring bacterial communities in a soil under industrial use contaminated with hydrocarbons
Cited by: 30
Author(s): Stefanie Wallisch, T. Gril, Dong Xia, Gerd Welzl, Christian Bruns, Ester Heath, Marion Engel, M. Suhadolc, Michael Schloter
Software Mentions: 2
Published: over 12 years ago

10.3389/fmicb.2020.551444

Rhizosphere Bacterial Community Response to Continuous Cropping of Tibetan Barley
Cited by: 9
Author(s): Youhua Yao, Xiaohua Yao, Likun An, Yang Bai, Dexin Xie, Kaiyi Wu
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2018.02336

Changes in the Fungal Microbiome of Maize During Hermetic Storage in the United States and Kenya
Cited by: 19
Author(s): Brett Lane, Sandeep Sharma, Chenxing Niu, Angeline W. Maina, John M. Wagacha, Burton H. Bluhm, Charles P. Woloshuk
Software Mentions: 2
Published: about 8 years ago

10.3389/fmicb.2017.02453

Oxygenation of Hypoxic Coastal Baltic Sea Sediments Impacts on Chemistry, Microbial Community Composition, and Metabolism
Cited by: 27
Author(s): Elias Broman, Varvara Sachpazidou, Jarone Pinhassi, Mark Dopson
Software Mentions: 2
Published: almost 9 years ago

10.1002/ece3.2553

Microbial community responses to soil tillage and crop rotation in a corn/soybean agroecosystem
Cited by: 86
Author(s): Chris R. Smith, Peter L. Blair, Charlie Boyd, Brianne Cody, Alexander Hazel, Ashley R. Hedrick, Hitesh Kathuria, Parul Khurana, Brent A. Kramer, Kristin Muterspaw, Charles Peck, Emily Sells, J.S. Skinner, Cara Tegeler, Zoe Wolfe
Software Mentions: 2
Published: almost 10 years ago

10.1002/ece3.2803

Elevational gradient and human effects on butterfly species richness in the French Alps
Cited by: 19
Author(s): Arnaud Gallou, Yann Baillet, Gentile Francesco Ficetola, Laurence Després
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2021.628746

Tundra Type Drives Distinct Trajectories of Functional and Taxonomic Composition of Arctic Fungal Communities in Response to Climate Change – Results From Long-Term Experimental Summer Warming and Increased Snow Depth
Cited by: 8
Author(s): József Geml, Luis Morgado, Tatiana A. Semenova‐Nelsen
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2012.00342

Endophytic bacterial community of a Mediterranean marine angiosperm (Posidonia oceanica)
Cited by: 47
Author(s): Neus Garcías-Bonet, Jesús M. Arrieta, Charles Novaes de Santana, Carlos M. Duarte, Núria Marbà
Software Mentions: 2
Published: almost 15 years ago

10.3389/fmicb.2021.675763

Directional Selection of Microbial Community Reduces Propionate Accumulation in Glycerol and Glucose Anaerobic Bioconversion Under Elevated pCO2
Cited by: 11
Author(s): Pamela Ceron-Chafla, Yu Ting Chang, Korneel Rabaey, Jules B. van Lier, Ralph E.F. Lindeboom
Software Mentions: 2
Published: over 5 years ago

10.1002/ece3.6984

Changes in vegetation structure and composition of a lowland mire over a sixty‐five‐year interval
Cited by: 1
Author(s): Alexander Lovegrove, Adrian C. Newton, Paul M. Evans, Anita Díaz, Arthur C Newton, Lynn Davy, P. J. Newbould
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2021.708531

Relative Importance of Stochastic Assembly Process of Membrane Biofilm Increased as Biofilm Aged
Cited by: 8
Author(s): Gerald Matar, Muhammad Ali, Samik Bagchi, Suzana Pereira Nunes, Wen Tso Liu, Pascal E. Saikaly
Software Mentions: 2
Published: about 5 years ago

10.1002/ece3.2269

Evaluating the influence of life‐history characteristics on genetic structure: a comparison of small mammals inhabiting complex agricultural landscapes
Cited by: 21
Author(s): Elizabeth M. Kierepka, Sara Anderson, Robert K. Swihart, Olin E. Rhodes
Software Mentions: 2
Published: about 10 years ago

10.3389/fmicb.2019.00536

Diverse Environmental Microbiota as a Tool to Augment Biodiversity in Urban Landscaping Materials
Cited by: 33
Author(s): Nan Hui, Mira Grönroos, Marja I. Roslund, Heli K. Vari, Laura Soininen, Olli H. Laitinen, Aki Sinkkonen
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2021.697860

Vertical Stratification of Dissolved Organic Matter Linked to Distinct Microbial Communities in Subtropic Estuarine Sediments
Cited by: 9
Author(s): Wenxiu Wang, Jianchang Tao, Ke Yu, Chen He, Jianjun Wang, Penghui Li, Hongmei Chen, Bu Xu, Quan Shi, Chuanlun Zhang
Software Mentions: 2
Published: about 5 years ago

10.1002/ece3.6970

Fine‐scale variation within urban landscapes affects marking patterns and gastrointestinal parasite diversity in red foxes
Cited by: 6
Author(s): Lisa V. Gecchele, Amy B. Pedersen, Matthew B.V. Bell
Software Mentions: 2
Published: almost 6 years ago

10.1002/ece3.1075

Consistent size‐independent harvest selection on fish body shape in two recreationally exploited marine species
Cited by: 30
Author(s): Josep Alós, Miquel Palmer, Marta Linde‐Medina, Robert Arlinghaus
Software Mentions: 2
Published: over 12 years ago

10.3389/fmicb.2019.00743

Freshwater Bacterioplankton Metacommunity Structure Along Urbanization Gradients in Belgium
Cited by: 15
Author(s): Fabio Toshiro T. Hanashiro, Shinjini Mukherjee, Caroline Souffreau, Jessie Engelen, Kristien I. Brans, Pieter Busschaert, Luc De Meester
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2015.00162

Colonization of plant substrates at hydrothermal vents and cold seeps in the northeast Atlantic and Mediterranean and occurrence of symbiont-related bacteria
Cited by: 7
Author(s): Kamil M. Szafrański, Philippe Deschamps, Marina R. Cunha, Sylvie M. Gaudron, Sébastien Duperron
Software Mentions: 2
Published: over 11 years ago

10.3389/fmicb.2020.01021

Bacterial Communities in Stream Biofilms in a Degrading Grassland Watershed on the Qinghai–Tibet Plateau
Cited by: 12
Author(s): Ze Ren, Decao Niu, Panpan Ma, Ying Wang, Zhaomin Wang, Hua Fu, James J. Elser
Software Mentions: 2
Published: over 6 years ago

10.1038/s42003-021-01742-w

1 °C warming increases spatial competition frequency and complexity in Antarctic marine macrofauna
Cited by: 5
Author(s): David K. A. Barnes, Gail Ashton, Simon A. Morley, Lloyd S. Peck
Software Mentions: 2
Published: over 5 years ago

10.1038/s42003-020-01627-4

Genome-wide study of a Neolithic Wartberg grave community reveals distinct HLA variation and hunter-gatherer ancestry
Cited by: 14
Author(s): Alexander Immel, Federica Pierini, Christoph Rinne, John Meadows, Rodrigo Barquera, András Szolek, Julian Susat, Lisa Böhme, Janina Dose, Joanna H. Bonczarowska, Clara Drummer, Katharina Fuchs, David Ellinghaus, Jan Christian Kässens, Martin Furholt, Oliver Kohlbacher, Sabine Schade-Lindig, André Franke, Stefan Schreiber, Johannes Krause, Johannes Müller, Tobias Lenz, Almut Nebel, Ben Krause‐Kyora
Software Mentions: 2
Published: over 5 years ago

10.1038/s42003-018-0260-y

Nematodes in a polar desert reveal the relative role of biotic interactions in the coexistence of soil animals
Cited by: 33
Author(s): Tancredi Caruso, Ian D. Hogg, Uffe N. Nielsen, Eric Bottos, Charles K. Lee, D. W. Hopkins, S. Craig Cary, John E. Barrett, T.G. Allan Green, B. C. Storey, Diana H. Wall, Byron J. Adams
Software Mentions: 2
Published: over 7 years ago

10.1128/mSystems.00055-20

Mucosal Microbiota and Metabolome along the Intestinal Tract Reveal a Location-Specific Relationship
Cited by: 23
Author(s): Ce Yuan, Melanie L. Graham, Christopher Staley, Subbaya Subramanian
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2020.536535

Patterns of in situ Mineral Colonization by Microorganisms in a ~60°C Deep Continental Subsurface Aquifer
Cited by: 7
Author(s): Sean W. Mullin, Greg Wanger, Brittany R. Kruger, Joshua D. Sackett, Scott D. Hamilton-Brehm, R. Bhartia, Jan P. Amend, Duane P. Moser, Victoria J. Orphan
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2019.02950

Silicate Fertilizer Amendment Alters Fungal Communities and Accelerates Soil Organic Matter Decomposition
Cited by: 12
Author(s): Suvendu Das, Jeong Gu Lee, Song Rae Cho, Hyeon Ji Song
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2018.02430

Effects of a Commercial Microbial Agent on the Bacterial Communities in Shrimp Culture System
Cited by: 20
Author(s): Zidan Liu, Linglin Qiuqian, Zhiyuan Yao, Xin Wang, Lei Huang, Jialai Zheng, Kai Wang, Laiguo Li, Demin Zhang
Software Mentions: 2
Published: about 8 years ago

10.1038/s42003-020-01587-9

A unified framework for herbivore-to-producer biomass ratio reveals the relative influence of four ecological factors
Cited by: 3
Author(s): Takehiro Kazama, Jotaro Urabe, Masato Yamamichi, Kotaro Tokita, Xia Yin, Izumi Katano, Hideyuki Doi, Takehito Yoshida, Nelson G. Hairston
Software Mentions: 2
Published: almost 6 years ago

10.1128/mSystems.00119-20

Continental-Scale Microbiome Study Reveals Different Environmental Characteristics Determining Microbial Richness, Composition, and Quantity in Hotel Rooms
Cited by: 16
Author(s): Fu Xi, Yanling Li, Qianqian Yuan, Gui-Hong Cai, Yiqun Deng, Xin Zhang, Dan Norbäck, Yu Sun
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2020.01519

Fungal Endophyte Communities of Crucifer Crops Are Seasonally Dynamic and Structured by Plant Identity, Plant Tissue and Environmental Factors
Cited by: 10
Author(s): Junhui Chen, Komivi Senyo Akutse, Hafiz Sohaib Ahmed Saqib, Xiaolu Wu, Fei‐Ying Yang, Xiaofeng Xia, Liande Wang, Mark S. Goettel, Minsheng You, Geoff M. Gurr
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2018.00354

Linking the Effect of Antibiotics on Partial-Nitritation Biofilters: Performance, Microbial Communities and Microbial Activities
Cited by: 34
Author(s): Alejandro González‐Martínez, Alejandro Margareto, Alejandro Rodríguez-Sánchez, Chiara Pesciaroli, M. Silvia Díaz˗Cruz, Damià Barceló, Riku Vahala
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0123943

Passive Acoustic Monitoring of the Temporal Variability of Odontocete Tonal Sounds from a Long-Term Marine Observatory
Cited by: 18
Author(s): Tzu‐Hao Lin, Hon‐Tsen Yu, Chi‐Fang Chen, Lien‐Siang Chou
Software Mentions: 2
Published: over 11 years ago

10.1038/s42003-019-0481-8

Synergies between mycorrhizal fungi and soil microbial communities increase plant nitrogen acquisition
Cited by: 85
Author(s): Rachel Hestrin, Edith C. Hammer, Carsten W. Mueller, Johannes Lehmann
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0187461

Species-specific signatures of the microbiome from Camponotus and Colobopsis ants across developmental stages
Cited by: 34
Author(s): Manuela de Oliveira Ramalho, Odair Corrêa Bueno, Corrie S. Moreau
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0051962

Soil Functional Operating Range Linked to Microbial Biodiversity and Community Composition Using Denitrifiers as Model Guild
Cited by: 20
Author(s): Sara Hallin, Allana Welsh, John Stenström, Stéphanie Hallet, Karin Enwall, David Bru, Laurent Philippot
Software Mentions: 2
Published: almost 14 years ago

10.3389/fmicb.2021.581124

Patterns in Benthic Microbial Community Structure Across Environmental Gradients in the Beaufort Sea Shelf and Slope
Cited by: 11
Author(s): A. Walker, Mary Beth Leigh, Sarah L. Mincks
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2020.569512

Plant Growth Promoting Rhizobacteria Alleviate Aluminum Toxicity and Ginger Bacterial Wilt in Acidic Continuous Cropping Soil
Cited by: 12
Author(s): Shuting Zhang, Qipeng Jiang, Xiaojiao Liu, Liehua Liu, Wei Ding
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2020.01996

High Aluminum Drives Different Rhizobacterial Communities Between Aluminum-Tolerant and Aluminum-Sensitive Wild Soybean
Cited by: 15
Author(s): Qihan Shi, Jing Jin, Yuantai Liu, Yafeng Zhang, Zhandong Cai, Qibin Ma, Yanbo Cheng, Ronghui Wen, Hai Nian, Tengxiang Lian
Software Mentions: 2
Published: about 6 years ago

10.1038/s42003-020-01547-3

Ecological plasticity governs ecosystem services in multilayer networks
Cited by: 12
Author(s): Clare Gray, Athen Ma, Órla B. McLaughlin, Sandrine Petit, Guy Woodward, David Bohan
Software Mentions: 2
Published: over 5 years ago

10.3390/cells10040823

A New Strain of Christensenella minuta as a Potential Biotherapy for Obesity and Associated Metabolic Diseases
Cited by: 31
Author(s): Wilfrid Mazier, Katy Le Corf, Ccori Martinez, Héloïse Tudela, Déborah Kissi, Camille Kropp, Chrislain Coubard, Marion Soto, Frédéric Elustondo, Georges Rawadi, Sandrine P. Claus
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2016.01206

Rumen Bacterial Community Composition in Holstein and Jersey Cows Is Different under Same Dietary Condition and Is Not Affected by Sampling Method
Cited by: 123
Author(s): Henry A. Paz, Christopher L. Anderson, Makala J. Muller, P.J. Kononoff, Samodha C. Fernando
Software Mentions: 2
Published: about 10 years ago

10.3389/fmicb.2018.00433

Root-Associated Fungi Shared Between Arbuscular Mycorrhizal and Ectomycorrhizal Conifers in a Temperate Forest
Cited by: 40
Author(s): Hirokazu Toju, Hirotoshi Sato
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0112942

Müllerian Mimicry as a Result of Codivergence between Velvet Ants and Spider Wasps
Cited by: 15
Author(s): Juanita Rodríguez, James P. Pitts, Carol D. von Dohlen, Joseph S. Wilson
Software Mentions: 2
Published: almost 12 years ago

10.1016/j.chom.2019.05.001

Dynamic Modulation of the Gut Microbiota and Metabolome by Bacteriophages in a Mouse Model
Cited by: 286
Author(s): Bryan B. Hsu, Travis E. Gibson, Vladimir Yeliseyev, Qing Liu, Lorena Lyon, Lynn Bry, Pamela A. Silver, Georg K. Gerber
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2019.02832

Changes in Microbiota Across Developmental Stages of Aedes koreicus, an Invasive Mosquito Vector in Europe: Indications for Microbiota-Based Control Strategies
Cited by: 30
Author(s): Niccolò Alfano, Valentina Tagliapietra, Fausta Rosso, Mattia Manica, Daniele Arnoldi, Massimo Pindo, Annapaola Rizzoli
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2018.01920

Bacterial Diversity in Chinese Rushan Cheese From Different Geographical Origins
Cited by: 15
Author(s): Jinai Xue, Yi Yang, Zhaoxia Wang, Yurong Guo, Yiming Shao
Software Mentions: 2
Published: about 8 years ago

10.3389/fmicb.2021.684386

Variation in Soil Microbial Communities Along an Elevational Gradient in Alpine Meadows of the Qilian Mountains, China
Cited by: 10
Author(s): Yulong Duan, Jing Lian, Lilong Wang, Xuyang Wang, Yongqing Luo, Wanfu Wang, Fasi Wu, Jianhua Zhao, Yun Ding, Jun Ma, Yulin Li, Yuqiang Li
Software Mentions: 2
Published: over 5 years ago

10.1128/mSystems.00869-19

FORENSIC: an Online Platform for Fecal Source Identification
Cited by: 12
Author(s): Adélaïde Roguet, Özcan C. Esen, A. Murat Eren, Ryan J. Newton, Sandra L. McLellan
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2020.01898

Accelerated Biodegradation of the Agrochemical Ametoctradin by Soil-Derived Microbial Consortia
Cited by: 2
Author(s): Hunter D. Whittington, Mahatam Singh, Chanh Ta, M. Andrea Azcárate-Peril, José M. Bruno-Bárcena
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2015.01097

Nutrient-cycling microbes in coastal Douglas-fir forests: regional-scale correlation between communities, in situ climate, and other factors
Cited by: 21
Author(s): Philip‐Edouard Shay, Richard S. Winder, J. A. Trofymow
Software Mentions: 2
Published: about 11 years ago

10.3389/fmicb.2021.669131

Bacterial Community Spacing Is Mainly Shaped by Unique Species in the Subalpine Natural Lakes of China
Cited by: 3
Author(s): Jinxian Liu, Jiahe Su, Meiting Zhang, Luo Zhengming, Xiaoqi Li, Bo Chai
Software Mentions: 2
Published: over 5 years ago

10.3390/cancers13163987

Ultrafine Jujube Powder Enhances the Infiltration of Immune Cells during Anti-PD-L1 Treatment against Murine Colon Adenocarcinoma
Cited by: 10
Author(s): Nan Jing, Luoyang Wang, Huiren Zhuang, Guoqiang Jiang, Zheng Liu
Software Mentions: 2
Published: about 5 years ago

10.3390/cancers12092619

Alterations in Gastric Microbial Communities Are Associated with Risk of Gastric Cancer in a Korean Population: A Case-Control Study
Cited by: 10
Author(s): Madhawa Gunathilake, Jeonghee Lee, Il Ju Choi, Young Il Kim, Jaekyung Yoon, Woo Jun Sul, Jihyun F. Kim, Jeongseon Kim
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0179443

DNA extraction replicates improve diversity and compositional dissimilarity in metabarcoding of eukaryotes in marine sediments
Cited by: 61
Author(s): Anders Lanzén, Katrine Lekang, Inge Jonassen, Eric M. Thompson, Christofer Troedsson
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2020.582655

Geographical Variability of Mineral Elements and Stability of Restrictive Mineral Elements in Terrestrial Cyanobacteria Across Gradients of Climate, Soil, and Atmospheric Wet Deposition Mineral Concentration
Cited by: 2
Author(s): Weibo Wang, Hua Li, René Guénon, Yuyi Yang, Shijun Xiao, Xiaoli Cheng, Quanfa Zhang
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2015.01028

A unique assemblage of cosmopolitan freshwater bacteria and higher community diversity differentiate an urbanized estuary from oligotrophic Lake Michigan
Cited by: 73
Author(s): Ryan J. Newton, Sandra L. McLellan
Software Mentions: 2
Published: about 11 years ago

10.3389/fmicb.2020.00353

Petroleum Depletion Property and Microbial Community Shift After Bioremediation Using Bacillus halotolerans T-04 and Bacillus cereus 1-1
Cited by: 13
Author(s): Zhili Deng, Yingying Jiang, Kaikai Chen, Fei Gao, Xiaodong Liu
Software Mentions: 2
Published: over 6 years ago

10.1128/mSystems.00626-20

The Behavior of Amphibians Shapes Their Symbiotic Microbiomes
Cited by: 17
Author(s): Liangliang Xu, Mengmeng Xiang, Wei Zhu, Mengjie Zhang, Hua Chen, Jin Huang, Youhua Chen, Qing Chang, Jianping Jiang, Lifeng Zhu
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0250695

Description and comparison of the skin and ear canal microbiota of non-allergic and allergic German shepherd dogs using next generation sequencing
Cited by: 6
Author(s): Neoklis Apostolopoulos, Stefanie P. Glaeser, Ruchi Bagwe, Stefan Janssen, Ursula Mayer, Christa Ewers, Peter Kämpfer, Reto Neiger, Nina Thom
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2017.00752

Predicting the HMA-LMA Status in Marine Sponges by Machine Learning
Cited by: 130
Author(s): Lucas Moitinho‐Silva, Georg Steinert, Shaun Nielsen, Cristiane Cassiolato Pires Hardoim, Yangjun Wu, Grace P. McCormack, Susanna López‐Legentil, Román Marchant, Nicole S. Webster, Torsten Thomas, Ute Hentschel
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0222048

Effects of foliar application of amino acid liquid fertilizers, with or without Bacillus amyloliquefaciens SQR9, on cowpea yield and leaf microbiota
Cited by: 20
Author(s): Dongsheng Wang, Xuhui Deng, Bei Wang, Na Zhang, Chengzhi Zhu, Zixuan Jiao, Rong Li
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2015.01339

Impact of Lowland Rainforest Transformation on Diversity and Composition of Soil Prokaryotic Communities in Sumatra (Indonesia)
Cited by: 71
Author(s): Dominik Schneider, Martin Engelhaupt, Kara Allen, Syahrul Kurniawan, Valentyna Krashevska, Melanie Heinemann, Heiko Nacke, Marini Wijayanti, Anja Meryandini, Marife D. Corre, Stefan Scheu, Rolf Daniel
Software Mentions: 2
Published: almost 11 years ago

10.3389/fmicb.2019.02184

13C-DNA-SIP Distinguishes the Prokaryotic Community That Metabolizes Soybean Residues Produced Under Different CO2 Concentrations
Cited by: 5
Author(s): Yanhong Wang, Zhenhua Yu, Yansheng Li, Guanghua Wang, Caixian Tang, Xiaobing Liu, Zhihuang Xie, Jian Jin
Software Mentions: 2
Published: about 7 years ago

10.3389/fneur.2020.01015

Evaluation of an Immunomodulatory Probiotic Intervention for Veterans With Co-occurring Mild Traumatic Brain Injury and Posttraumatic Stress Disorder: A Pilot Study
Cited by: 26
Author(s): Lisa A. Brenner, Jeri E. Forster, Kelly A. Stearns‐Yoder, Christopher E. Stamper, Andrew J. Hoisington, Diana P. Brostow, Meredith Mealer, Hal S. Wortzel, Teodor T. Postolache, Christopher A. Lowry
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0127234

Effort versus Reward: Preparing Samples for Fungal Community Characterization in High-Throughput Sequencing Surveys of Soils
Cited by: 31
Author(s): Zewei Song, Dan Schlatter, Peter G. Kennedy, Linda L. Kinkel, H. Corby Kistler, Nhu Nguyen, Scott T. Bates
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0078687

Low Incidence of Spontaneous Type 1 Diabetes in Non-Obese Diabetic Mice Raised on Gluten-Free Diets Is Associated with Changes in the Intestinal Microbiome
Cited by: 105
Author(s): Eric Marietta, Andrés Gómez, Carl J. Yeoman, Ashenafi Y. Tilahun, Chad R. Clark, David Luckey, Joseph A. Murray, Bryan A. White, Yogish C. Kudva, Govindarajan Rajagopalan
Software Mentions: 2
Published: almost 13 years ago

10.3389/fnut.2021.667130

β-Sitosterol Ameliorates Endometrium Receptivity in PCOS-Like Mice: The Mediation of Gut Microbiota
Cited by: 22
Author(s): Yanyan Yu, Ying Cao, Wen-Ling Huang, Yanxia Liu, Ying Lü, Zhao Jie
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0199343

Seasonality modulates the predictive skills of diatom based salinity transfer functions
Cited by: 5
Author(s): Alejandra Goldenberg-Vilar, Timme H. Donders, Aleksandra Cvetkoska, Friederike Wagner-Cremer
Software Mentions: 2
Published: almost 8 years ago

10.3389/fphar.2020.01092

Rhubarb Enema Improved Colon Mucosal Barrier Injury in 5/6 Nephrectomy Rats May Associate With Gut Microbiota Modification
Cited by: 37
Author(s): Chunlan Ji, Yusheng Deng, Yang Ai, Zhaoyu Lu, Yang Chen, Xusheng Liu, Lijuan Han, Chuan Zou
Software Mentions: 2
Published: about 6 years ago

10.3389/fphar.2020.00223

Effect of Berberine on Atherosclerosis and Gut Microbiota Modulation and Their Correlation in High-Fat Diet-Fed ApoE−/− Mice
Cited by: 119
Author(s): Min Wu, Shengjie Yang, Songzi Wang, Yu Cao, Ran Zhao, Xinye Li, Yanwei Xing, Longtao Liu
Software Mentions: 2
Published: over 6 years ago

10.3389/fphar.2017.00962

The Calcium-Induced Regulation in the Molecular and Transcriptional Circuitry of Human Inflammatory Response and Autoimmunity
Cited by: 14
Author(s): Ivo Ricardo de Seabra Rodrigues Dias, Simon Wing Fai Mok, Flora Gordillo-Martínez, Imran Khan, W.L. Wendy Hsiao, Betty Yuen‐Kwan Law, Vincent Kam Wai Wong, Liang Liu
Software Mentions: 2
Published: almost 9 years ago

10.1128/mSystems.00911-20

Strain-Level Analysis of <i>Bifidobacterium</i> spp. from Gut Microbiomes of Adults with Differing Lactase Persistence Genotypes
Cited by: 9
Author(s): Victor T. Schmidt, Hagay Enav, Timothy D. Spector, Nicholas D. Youngblut, Ruth E. Ley
Software Mentions: 2
Published: almost 6 years ago

10.3389/fphys.2019.01079

Effects of Dietary-SCFA on Microbial Protein Synthesis and Urinal Urea-N Excretion Are Related to Microbiota Diversity in Rumen
Cited by: 11
Author(s): Zhongyan Lu, Hong Shen, Zongzhuan Shen
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0206805

Interaction of land management and araucaria trees in the maintenance of landscape diversity in the highlands of southern Brazil
Cited by: 11
Author(s): Rafael Barbizan Sühs, Eduardo Luís Hettwer Giehl, Nivaldo Peroni
Software Mentions: 2
Published: almost 8 years ago

10.3389/fpls.2020.578812

nifH Gene Sequencing Reveals the Effects of Successive Monoculture on the Soil Diazotrophic Microbial Community in Casuarina equisetifolia Plantations
Cited by: 5
Author(s): Liuting Zhou, Jianjuan Li, Ganga Raj Pokhrel, Jun Chen, Yanlin Zhao, Ying Bai, Chen Zhang, Wenxiong Lin, Zeyan Wu, Chengzhen Wu
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0195286

Metrics and methods for characterizing dairy farm intensification using farm survey data
Cited by: 35
Author(s): Alejandra M. Gonzalez-Mejia, David Styles, Paul N. Wilson, James Gibbons
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0099722

The Bias Associated with Amplicon Sequencing Does Not Affect the Quantitative Assessment of Bacterial Community Dynamics
Cited by: 42
Author(s): Federico M. Ibarbalz, Maidelyn Díaz Pérez, Eva Lucía Margarita Figuerola, Leonardo Erijman
Software Mentions: 2
Published: over 12 years ago

10.1186/s13099-019-0297-6

Compositional and functional differences in human gut microbiome with respect to equol production and its association with blood lipid level: a cross-sectional study
Cited by: 23
Author(s): Wei Zheng, Yue Ma, Aihua Zhao, Tao He, Na Lyu, Zhengqiang Pan, Geqi Mao, Yan Liu, Jing Li, Peiyu Wang, Jun Wang, Baoli Zhu, Yumei Zhang
Software Mentions: 2
Published: over 7 years ago

10.1186/s13099-019-0341-6

Microbial imbalance in inflammatory bowel disease patients at different taxonomic levels
Cited by: 189
Author(s): Mohammad Tauqeer Alam, Gregory C. A. Amos, Andrew Murphy, Simon Murch, Elizabeth M. H. Wellington, Ramesh P. Arasaradnam
Software Mentions: 2
Published: almost 7 years ago

10.1016/j.heliyon.2019.e02003

Anuran tadpoles inhabiting a fluoride-rich stream: diets and morphological indicators
Cited by: 5
Author(s): Favio E. Pollo, Luciana Cibils‐Martina, Manuel A. Otero, Mariana Baraquet, Pablo Raúl Grenat, Nancy Edith Salas, Adolfo Ludovico Martino
Software Mentions: 2
Published: over 7 years ago

10.1016/j.heliyon.2020.e03311

Gut microbiome structure and adrenocortical activity in dogs with aggressive and phobic behavioral disorders
Cited by: 31
Author(s): Elisabetta Mondo, Monica Barone, Matteo Soverini, Federica D’Amico, Massimo Cocchi, Carmen Adele Petrulli, Michela Mattioli, Giovanna Marliani, Marco Candela, Pier Attilio Accorsi
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0056710

454 Pyrosequencing Analysis on Faecal Samples from a Randomized DBPC Trial of Colicky Infants Treated with Lactobacillus reuteri DSM 17938
Cited by: 90
Author(s): Stefan Roos, Johan Dicksved, Valentina Tarasco, Emanuela Locatelli, Fulvio Ricceri, Ulf Grandin, Francesco Savino
Software Mentions: 2
Published: over 13 years ago

10.1177/0959683618788651

Molluscan benthic communities at Brijuni Islands (northern Adriatic Sea) shaped by Holocene sea-level rise and recent human eutrophication and pollution
Cited by: 9
Author(s): Sara-Maria Schnedl, Alexandra Haselmair, Ivo Gallmetzer, Anna-Katharina Mautner, Adam Tomášových, Martin Zuschin
Software Mentions: 2
Published: about 8 years ago

10.1038/s41438-020-00352-7

Genome sequencing and population genomics modeling provide insights into the local adaptation of weeping forsythia
Cited by: 29
Author(s): Lin Feng Li, Samuel A. Cushman, He Yan, Yong Li
Software Mentions: 2
Published: about 6 years ago

10.1186/s43008-020-00050-y

Polypore fungi as a flagship group to indicate changes in biodiversity – a test case from Estonia
Cited by: 13
Author(s): Kadri Runnel, Otto Miettinen, Asko Lõhmus
Software Mentions: 2
Published: over 5 years ago

10.1002/iid3.349

Multiomic analysis identifies natural intrapatient temporal variability and changes in response to systemic corticosteroid therapy in chronic rhinosinusitis
Cited by: 4
Author(s): Michael Hoggard, Bincy Jacob, David A. Wheeler, Melissa Zoing, Kevin Chang, Kristi Biswas, Martin Middleditch, Richard Douglas, Michael W. Taylor
Software Mentions: 2
Published: almost 6 years ago

10.1128/IAI.00270-21

A Trifecta of New Insights into Ovine Footrot for Infection Drivers, Immune Response, and Host-Pathogen Interactions
Cited by: 2
Author(s): Adam Blanchard, Ceri Staley, Laurence Shaw, Sean Wattegedera, Christina‐Marie Baumbach, Jule Kristin Michler, Catrin S. Rutland, Charlotte Back, Nerissa Newbold, Gary Entrican, Sabine Tötemeyer
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0124807

Riverine Landscape Patch Heterogeneity Drives Riparian Ant Assemblages in the Scioto River Basin, USA
Cited by: 18
Author(s): Paradzayi Tagwireyi, Sean Sullivan
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0220463

The feline cutaneous and oral microbiota are influenced by breed and environment
Cited by: 31
Author(s): Caitlin E. Older, Alison Diesel, Sara D. Lawhon, Cintia R. R. Queiroz, Luan Cleber Henker, Aline Rodrigues Hoffmann
Software Mentions: 2
Published: about 7 years ago

10.3390/insects9040188

Hibernation Leads to Altered Gut Communities in Bumblebee Queens (Bombus terrestris)
Cited by: 13
Author(s): Lien Bosmans, María I. Pozo, Christel Verreth, Sam Crauwels, Félix Wäckers, Hans Jacquemyn, Bart Lievens
Software Mentions: 2
Published: almost 8 years ago

10.3390/insects10100322

Structuring of Dragonfly Communities (Insecta: Odonata) in Eastern Amazon: Effects of Environmental and Spatial Factors in Preserved and Altered Streams
Cited by: 20
Author(s): José Max Barbosa de Oliveira, Leandro Juen
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0196440

The ecology of the Drosophila-yeast mutualism in wineries
Cited by: 32
Author(s): Allison S. Quan, Michael B. Eisen
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0175003

The Brazilian freshwater wetscape: Changes in tree community diversity and composition on climatic and geographic gradients
Cited by: 29
Author(s): Florian Wittmann, Márcia C. M. Marques, Geraldo Damasceno Júnior, Jean Carlos Budke, Maria Teresa Fernandez Piedade, Astrid de Oliveira Wittmann, Juan Carlos Montero, Rafael Leandro de Assis, Natália Targhetta, Pia Parolin, Wolfgang J. Junk, John Ethan Householder
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0193430

Prey fish returned to Forster’s tern colonies suggest spatial and temporal differences in fish composition and availability
Cited by: 2
Author(s): Sarah H. Peterson, Joshua T. Ackerman, Collin A. Eagles‐Smith, Mark P. Herzog, C. Alex Hartman
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0142720

Evaluating DNA Extraction Methods for Community Profiling of Pig Hindgut Microbial Community
Cited by: 6
Author(s): Yang Lü, Philip Hugenholtz, Damien J. Batstone
Software Mentions: 2
Published: almost 11 years ago

10.3390/insects11010059

Vegetation Pattern Modulates Ground Arthropod Diversity in Semi-Arid Mediterranean Steppes
Cited by: 20
Author(s): Fernando Meloni, Berta F Civieta, Juan A. Zaragoza, María L. Moraza, Susana Bautista
Software Mentions: 2
Published: over 6 years ago

10.3390/insects11020100

A Guild-Based Protocol to Target Potential Natural Enemies of Philaenus spumarius (Hemiptera: Aphrophoridae), a Vector of Xylella fastidiosa (Xanthomonadaceae): A Case Study with Spiders in the Olive Grove
Cited by: 5
Author(s): Jacinto Benhadi‐Marín, María Villa, Luís F. Pereira, Isabel Rodrigues, Marina Morente, Paula Baptista, José Alberto Pereira
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0038450

Shelters and Their Use by Fishes on Fringing Coral Reefs
Cited by: 29
Author(s): Alexandre Ménard, Katrine Turgeon, Dominique G. Roche, Sandra A. Binning, Donald L. Kramer
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0234751

Perinatal risk factors for fecal antibiotic resistance gene patterns in pregnant women and their infants
Cited by: 15
Author(s): Andrea Sosa-Moreno, Sarah S. Comstock, Kameron Y. Sugino, Fui Enn Teng, Nigel Paneth, Yelena Davis, Rosemary Olivero, Rebecca Schein, Joel Maurer, Lixin Zhang
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0222824

Lipid and fatty acid dynamics by maternal Pacific bluefin tuna
Cited by: 10
Author(s): Yosuke Hiraoka, Yumi Okochi, Seiji Ohshimo, Tamaki Shimose, Hiroshi Ashida, Takuya Sato, Yasuhiro Ando
Software Mentions: 2
Published: about 7 years ago

10.3390/insects11100719

Divergence in Gut Bacterial Community Among Life Stages of the Rainbow Stag Beetle Phalacrognathus muelleri (Coleptera: Lucanidae)
Cited by: 7
Author(s): Miaomiao Wang, Xingjia Xiang, Xia Wan
Software Mentions: 2
Published: almost 6 years ago