cran: vegan | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2018.03103

Effect of Acidic Industrial Effluent Release on Microbial Diversity and Trace Metal Dynamics During Resuspension of Coastal Sediment
Cited by: 29
Author(s): Hana Zouch, Léa Cabrol, Sandrine Chifflet, Marc Tedetti, Fatma Karray, Hatem Zaghden, Sami Sayadi, Marianne Quéméneur
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2020.548607

Total Arsenic, pH, and Sulfate Are the Main Environmental Factors Affecting the Microbial Ecology of the Water and Sediments in Hulun Lake, China
Cited by: 13
Author(s): Yongquan Shang, Xiaoyang Wu, Qinguo Wei, Huashan Dou, Xibao Wang, Jun Chen, Huanxin Zhang, Shengchao Ma, Honghai Zhang
Software Mentions: 2
Published: about 4 years ago

10.3389/fmicb.2018.01985

Microbial Community and in situ Bioremediation of Groundwater by Nitrate Removal in the Zone of a Radioactive Waste Surface Repository
Cited by: 45
Author(s): Alexey Safonov, Т. Л. Бабич, Д. Ш. Соколова, Denis S. Grouzdev, T. P. Tourova, А. Б. Полтараус, Еlena V. Zakharova, Alexander Y. Merkel, А. П. Новиков, Т. Н. Назина
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2019.03012

Combined Application of High-Throughput Sequencing and Metabolomics Reveals Metabolically Active Microorganisms During Panxian Ham Processing
Cited by: 32
Author(s): Yu Mu, Wei Su, Yingchun Mu, Li Jiang
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0111667

Similar Processes but Different Environmental Filters for Soil Bacterial and Fungal Community Composition Turnover on a Broad Spatial Scale
Cited by: 32
Author(s): Nicolas Chemidlin Prévost-Bouré, Samuel Dequiedt, Jean Thioulouse, Mélanie Lelièvre, Nicolas P.A. Saby, Claudy Jolivet, Dominique Arrouays, Pierre Plassart, Philippe Lemanceau, Lionel Ranjard
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0225409

Watered-down biodiversity? A comparison of metabarcoding results from DNA extracted from matched water and bulk tissue biomonitoring samples
Cited by: 53
Author(s): Mehrdad Hajibabaei, Teresita M. Porter, Chloe Victoria Robinson, Donald J. Baird, Shadi Shokralla, Michael Wright
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2017.00750

Microbial Community Response on Wastewater Discharge in Boreal Lake Sediments
Cited by: 22
Author(s): Jatta Saarenheimo, Sanni L. Aalto, Antti J. Rissanen, Marja Tiirola
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2015.00427

Seasonal variation of bacterial endophytes in urban trees
Cited by: 54
Author(s): Shu Yi Shen, Roberta R. Fulthorpe
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0078969

Experimental Removal and Recovery of Subtidal Grazers Highlights the Importance of Functional Redundancy and Temporal Context
Cited by: 5
Author(s): Robin Elahi, Kenneth P. Sebens
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0106662

Salinity and Bacterial Diversity: To What Extent Does the Concentration of Salt Affect the Bacterial Community in a Saline Soil?
Cited by: 179
Author(s): Loredana Canfora, Giovanni Bacci, Flavia Pinzari, Giuseppe Lo Papa, Carmelo Dazzi, Antonio Benedetti
Software Mentions: 2
Published: about 10 years ago

10.3389/fmicb.2018.03169

Dynamics of Bacterial Communities Mediating the Treatment of an As-Rich Acid Mine Drainage in a Field Pilot
Cited by: 23
Author(s): Elia Laroche, Corinne Casiot, Lídia Fernández-Rojo, Angélique Desoeuvre, Vincent Tardy, Odile Bruneel, Fabienne Battaglia-Brunet, Catherine Joulian, Marina Héry
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2019.01520

Raw Material Regulates Flavor Formation via Driving Microbiota in Chinese Liquor Fermentation
Cited by: 34
Author(s): Chongchong Liu, Shengbao Feng, Qun Wu, Heqiang Huang, Zhanxiu Chen, Shanwen Li, Yan Xu
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2019.00758

Marine Deep Biosphere Microbial Communities Assemble in Near-Surface Sediments in Aarhus Bay
Cited by: 48
Author(s): Caitlin Petro, Birthe Zäncker, Piotr Starnawski, Lara Jochum, Timothy G. Ferdelman, Bo Barker Jørgensen, Hans Røy, Kasper Urup Kjeldsen, Andreas Schramm
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0194663

Use of in-field bioreactors demonstrate groundwater filtration influences planktonic bacterial community assembly, but not biofilm composition
Cited by: 8
Author(s): Geoff A. Christensen, Ji Won Moon, Allison M. Veach, Jennifer J. Mosher, Ann M. Wymore, Joy D. Van Nostrand, Jizhong Zhou, Terry C. Hazen, Adam P. Arkin, Dwayne A. Elias
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2019.01060

Bacterial Community Dynamics in an Oyster Hatchery in Response to Probiotic Treatment
Cited by: 31
Author(s): Rebecca J. Stevick, Saebom Sohn, Tejashree Modak, David R. Nelson, David C. Rowley, Karin Tammi, Roxanna Smolowitz, Kathryn Markey Lundgren, Anton F. Post, Marta Gómez-Chiarri
Software Mentions: 2
Published: over 5 years ago

10.3390/microorganisms8020304

Daily Intake of Paraprobiotic Lactobacillus amylovorus CP1563 Improves Pre-Obese Conditions and Affects the Gut Microbial Community in Healthy Pre-Obese Subjects: A Double-Blind, Randomized, Placebo-Controlled Study
Cited by: 13
Author(s): Toshitaka Sugawara, Daisuke Sawada, Sae Yanagihara, Yusuke Aoki, Isao Tanaka, Hirosuke Sugahara, Toshiyuki Hirota, Yasunori Nakamura, Susumu Ishikawa
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2020.01354

Water Microbiota in Greenhouses With Soilless Cultures of Tomato by Metabarcoding and Culture-Dependent Approaches
Cited by: 4
Author(s): Adeline Picot, José F. Cobo‐Díaz, Audrey Pawtowski, Christelle Donot, Fabienne Legrand, Gaétan Le Floch, F. Déniel
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0163930

Associations between an Invasive Plant (Taeniatherum caput-medusae, Medusahead) and Soil Microbial Communities
Cited by: 13
Author(s): Elise S. Gornish, Noah Fierer, Albert Barberán
Software Mentions: 2
Published: about 8 years ago

10.3389/fmicb.2020.570926

Antimicrobial Activity Against Phytopathogens and Inhibitory Activity on Solanine in Potatoes of the Endophytic Bacteria Isolated From Potato Tubers
Cited by: 21
Author(s): Jiameng Liu, Shanshan Wang, Xu Zheng, Nanguo Jin, Lu Jia, Yatao Huang, Bin Fan, Fengzhong Wang
Software Mentions: 2
Published: about 4 years ago

10.3389/fmicb.2018.02691

Uterine Microbiota of Dairy Cows With Clinical and Subclinical Endometritis
Cited by: 45
Author(s): Meng Ling Wang, Ming Chao Liu, Jin Xu, Li Gang An, Jiu Feng Wang, Yao Hong Zhu
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0190959

Soil microbial communities and enzyme activities in sea-buckthorn (Hippophae rhamnoides) plantation at different ages
Cited by: 29
Author(s): Miao Yang, Dan Yang, Xuan Yu
Software Mentions: 2
Published: almost 7 years ago

10.1128/mSystems.00869-19

FORENSIC: an Online Platform for Fecal Source Identification
Cited by: 12
Author(s): Adélaïde Roguet, Özcan C. Esen, A. Murat Eren, Ryan J. Newton, Sandra L. McLellan
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0232329

Exploring the effect of plant substrates on bacterial community structure in termite fungus-combs
Cited by: 11
Author(s): Shiyou Liang, Chengpan Wang, Farhan Ahmad, Yin XueJie, Yin Hu, Jianchu Mo
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0148947

Omnivory of an Insular Lizard: Sources of Variation in the Diet of Podarcis lilfordi (Squamata, Lacertidae)
Cited by: 30
Author(s): Ana Pérez‐Cembranos, Alicia León, Valentı́n Pérez-Mellado
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2021.674004

Prokaryotic, Fungal, and Unicellular Eukaryotic Core Communities Across Three Sympatric Marine Sponges From the Southwestern Atlantic Coast Are Dominated Largely by Deterministic Assemblage Processes
Cited by: 6
Author(s): Cristiane Cassiolato Pires Hardoim, Gisele Lôbo‐Hajdu, Márcio R. Custódio, Pablo R. Hardoim
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2017.00738

Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life
Cited by: 184
Author(s): Linda Wampach, Anna Heintz‐Buschart, Angela Hogan, Emilie Muller, Shaman Narayanasamy, Cédric Christian Laczny, Luisa W. Hugerth, Lutz Bindl, Jean Bottu, Anders F. Andersson, Carine de Beaufort, Paul Wilmes
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2017.00801

Spatial Structure of the Mormon Cricket Gut Microbiome and its Predicted Contribution to Nutrition and Immune Function
Cited by: 25
Author(s): Chad C. Smith, Robert B. Srygley, Frank Healy, Karthikeyan Swaminath, Ulrich G. Mueller
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2018.03296

High Frequency Multi-Year Variability in Baltic Sea Microbial Plankton Stocks and Activities
Cited by: 30
Author(s): Carina Bunse, Stina Israelsson, Federico Baltar, Mireia Bertos‐Fortis, Emil Fridolfsson, Catherine Legrand, Elin Lindehoff, Markus V. Lindh, Sandra Martínez‐García, Jarone Pinhassi
Software Mentions: 2
Published: almost 6 years ago

10.1128/mSystems.00626-20

The Behavior of Amphibians Shapes Their Symbiotic Microbiomes
Cited by: 17
Author(s): Liangliang Xu, Mengmeng Xiang, Wei Zhu, Mengjie Zhang, Hua Chen, Jin Huang, Youhua Chen, Qing Chang, Jianping Jiang, Lifeng Zhu
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2020.609950

Metagenomic Analysis of the Microbial Communities and Resistomes of Veal Calf Feces
Cited by: 8
Author(s): Debabrata Biswas, Seon Woo Kim, Ernest Hovingh, Jo Ann S. Van Kessel, Bradd J. Haley
Software Mentions: 2
Published: almost 4 years ago

10.3389/fmicb.2018.02437

Interactive Effects of Pesticides and Nutrients on Microbial Communities Responsible of Litter Decomposition in Streams
Cited by: 16
Author(s): Florent Rossi, Stéphane Pesce, Clarisse Mallet, C. Margoum, Arnaud Chaumot, Matthieu Masson, Joan Artigas
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2020.00683

Impact of Salinity on the Gastrointestinal Bacterial Community of Theodoxus fluviatilis
Cited by: 12
Author(s): Carmen Kivistik, Jan Knobloch, Kairi Käiro, Helen Tammert, Veljo Kisand, Jan‐Peter Hildebrandt, Daniel P. R. Herlemann
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2019.02144

Plant Identity Shaped Rhizospheric Microbial Communities More Strongly Than Bacterial Bioaugmentation in Petroleum Hydrocarbon-Polluted Sediments
Cited by: 24
Author(s): Dimitri J. Dagher, Ivan E. de la Providencia, Frédéric E. Pitre, Marc St‐Arnaud, Mohamed Hijri
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2020.01753

Life at the Frozen Limit: Microbial Carbon Metabolism Across a Late Pleistocene Permafrost Chronosequence
Cited by: 15
Author(s): Mary-Cathrine Leewis, Renaud Berlemont, David C. Podgorski, Archana Srinivas, Phoebe Zito, Robert G. M. Spencer, J. W. Mcfarland, Thomas A. Douglas, Christopher H. Conaway, Mark P. Waldrop, Rachel Mackelprang
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2021.652031

Correlation of Breed, Growth Performance, and Rumen Microbiota in Two Rustic Cattle Breeds Reared Under Different Conditions
Cited by: 18
Author(s): Matteo Daghio, Francesca Ciucci, Arianna Buccioni, Alice Cappucci, Laura Casarosa, Andrea Serra, Giuseppe Conte, Carlo Viti, Breanne McAmmond, Jonathan D. Van Hamme, Marcello Mele
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0158897

GUTSS: An Alignment-Free Sequence Comparison Method for Use in Human Intestinal Microbiome and Fecal Microbiota Transplantation Analysis
Cited by: 9
Author(s): M. Brittnacher, Sonya L. Heltshe, Hillary S. Hayden, Matthew C. Radey, Eli Weiss, Christopher J. Damman, Timothy L. Zisman, David L. Suskind, Samuel I. Miller
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2017.01153

Functional Gene Diversity and Metabolic Potential of the Microbial Community in an Estuary-Shelf Environment
Cited by: 22
Author(s): Yu Wang, Rui Zhang, Zhili He, Joy D. Van Nostrand, Qiang Zheng, Jizhong Zhou, Nianzhi Jiao
Software Mentions: 2
Published: over 7 years ago

10.1111/mec.15734

Environmental DNA metabarcoding of cow dung reveals taxonomic and functional diversity of invertebrate assemblages
Cited by: 16
Author(s): Eva Egelyng Sigsgaard, Kent Olsen, Morten D. D. Hansen, Ole Ingemann Hansen, Toke T. Høye, Jens‐Christian Svenning, Philip Francis Thomsen
Software Mentions: 2
Published: almost 4 years ago

10.3389/fmicb.2020.594265

The Effects of Earthworms on Fungal Diversity and Community Structure in Farmland Soil With Returned Straw
Cited by: 7
Author(s): Ke Song, Yuchun Sun, Qin Qin, Lijuan Sun, Xianqing Zheng, William Terzaghi, Wenzhen Lv, Yong Xue
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0041938

Communities of Arbuscular Mycorrhizal Fungi Detected in Forest Soil Are Spatially Heterogeneous but Do Not Vary throughout the Growing Season
Cited by: 137
Author(s): John Davison, Maarja Öpik, Martin Zobel, Martti Vasar, Madis Metsis, Mari Moora
Software Mentions: 2
Published: over 12 years ago

10.3389/fmicb.2018.02859

Microbial Community Structure in a Malaysian Tropical Peat Swamp Forest: The Influence of Tree Species and Depth
Cited by: 38
Author(s): Chin Chin Too, Alexander Keller, Wiebke Sickel, Sui Mae Lee, Catherine M. Yule
Software Mentions: 2
Published: almost 6 years ago

10.1111/mec.14696

Light availability impacts structure and function of phototrophic stream biofilms across domains and trophic levels
Cited by: 33
Author(s): Mia M. Bengtsson, Karoline Wagner, Clarissa Schwab, Tim Urich, Tom J. Battin
Software Mentions: 2
Published: over 6 years ago

10.1128/mSystems.00911-20

Strain-Level Analysis of <i>Bifidobacterium</i> spp. from Gut Microbiomes of Adults with Differing Lactase Persistence Genotypes
Cited by: 9
Author(s): Victor T. Schmidt, Hagay Enav, Timothy D. Spector, Nicholas D. Youngblut, Ruth E. Ley
Software Mentions: 2
Published: about 4 years ago

10.3389/fmicb.2017.01400

Wood Ash Induced pH Changes Strongly Affect Soil Bacterial Numbers and Community Composition
Cited by: 69
Author(s): Toke Bang‐Andreasen, Jeppe T. Nielsen, Jana Voříšková, Janine Heise, Regin Rønn, Rasmus Kjøller, Holger Bernt Hansen, Carsten Suhr Jacobsen
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2016.00316

Species Specificity of Bacteria Associated to the Brown Seaweeds Lobophora (Dictyotales, Phaeophyceae) and Their Potential for Induction of Rapid Coral Bleaching in Acropora muricata
Cited by: 35
Author(s): Christophe Vieira, Aschwin H. Engelen, Linda Guentas, Tânia Aires, Fanny Houlbrèque, Julie Gaubert, Ester A. Serrão, Olivier De Clerck, Claude Payri
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0175160

Nutrient enrichment is associated with altered nectar and pollen chemical composition in Succisa pratensis Moench and increased larval mortality of its pollinator Bombus terrestris L.
Cited by: 31
Author(s): Tobias Ceulemans, Eva Hulsmans, Wim Van den Ende, Olivier Honnay
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2020.00126

Differential Colonization and Succession of Microbial Communities in Rock and Soil Substrates on a Maritime Antarctic Glacier Forefield
Cited by: 57
Author(s): Isaac Garrido‐Benavent, Sergiо Pérez-Ortega, Jorge Durán, Carmen Ascaso, Stephen B. Pointing, Ricardo Rodríguez-Cielos, Francisco Navarro, Asunción de los Rı́os
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2016.00419

Microbial Communities in a High Arctic Polar Desert Landscape
Cited by: 26
Author(s): Clare M. McCann, Matthew J. Wade, Neil Gray, J. A. Fraser Roberts, Claude Hubert, David W. Graham
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2020.537960

Microbial Mats of the McMurdo Dry Valleys, Antarctica: Oases of Biological Activity in a Very Cold Desert
Cited by: 11
Author(s): Jill A. Sohm, Thomas D. Niederberger, Alexander E. Parker, Joëlle Tirindelli, Troy Gunderson, S. Craig Cary, Douglas G. Capone, Edward Carpenter
Software Mentions: 2
Published: about 4 years ago

10.3389/fmicb.2017.02400

Bacterial Diversity and Biogeochemistry of Two Marine Shallow-Water Hydrothermal Systems off Dominica (Lesser Antilles)
Cited by: 6
Author(s): Petra Pop Ristova, Thomas Pichler, Michael W. Friedrich, Solveig I Bühring
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2018.01769

Plant and Microbial Responses to Repeated Cu(OH)2 Nanopesticide Exposures Under Different Fertilization Levels in an Agro-Ecosystem
Cited by: 45
Author(s): Marie Simonin, Benjamin P. Colman, Wanhu Tang, Jonathan D. Judy, Steven M. Anderson, Christina M. Bergemann, Jennifer D. Rocca, Jason M. Unrine, Nicolas Cassar, Emily S. Bernhardt
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0097214

Changes in the Lung Microbiome following Lung Transplantation Include the Emergence of Two Distinct Pseudomonas Species with Distinct Clinical Associations
Cited by: 159
Author(s): Robert P. Dickson, John R. Erb-Downward, Christine M. Freeman, Neff Walker, Brittan S. Scales, James M. Beck, Fernando J. Martínez, Jeffrey L. Curtis, Vibha N. Lama, Gary B. Huffnagle
Software Mentions: 2
Published: over 10 years ago

10.3389/fmicb.2015.01436

Transplanting Soil Microbiomes Leads to Lasting Effects on Willow Growth, but not on the Rhizosphere Microbiome
Cited by: 84
Author(s): Étienne Yergeau, Terrence H. Bell, Julie Champagne, Christine Maynard, Stacie Tardif, Julien Tremblay, Charles W. Greer
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2014.00681

Soil bacterial community structure remains stable over a 5-year chronosequence of insect-induced tree mortality
Cited by: 25
Author(s): Scott Ferrenberg, Joseph E. Knelman, Jennifer Jones, Stower C. Beals, William D. Bowman, Diana R. Nemergut
Software Mentions: 2
Published: almost 10 years ago

10.3389/fmicb.2021.621126

Livestock Manure Type Affects Microbial Community Composition and Assembly During Composting
Cited by: 43
Author(s): Jinxin Wan, Xiaofang Wang, Tianjie Yang, Samiran Banerjee, Ville‐Petri Friman, Xinlan Mei, Yangchun Xu, Qirong Shen
Software Mentions: 2
Published: over 3 years ago

10.1093/molbev/msab119

Molecular Parallelism Underlies Convergent Highland Adaptation of Maize Landraces
Cited by: 26
Author(s): Li Wang, Emily B. Josephs, Kristin M. Lee, Lucas M. Roberts, Rubén Rellán‐Álvarez, Jeffrey Ross‐Ibarra, Matthew B. Hufford
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2019.01780

Characteristics of the Salivary Microbiota in Patients With Various Digestive Tract Cancers
Cited by: 53
Author(s): Shinya Kageyama, Toru Takeshita, Kenji Takeuchi, Mikari Asakawa, Rie Matsumi, Michiko Furuta, Yukie Shibata, Kiyoshi Nagai, Masahiko Inamori, Masaru Morita, Mitsuharu Masuda, Yasushi Toh, Yutaka Kiyohara, Toshiharu Ninomiya, Yoshihisa Yamashita
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2015.00447

Phyllostomid bat microbiome composition is associated to host phylogeny and feeding strategies
Cited by: 83
Author(s): Mario Carrillo-Araujo, Neslihan Taş, Rocı́o Alcántara-Hernández, Osiris Gaona, Jorge E. Schondube, Rodrigo A. Medellín, Janet Jansson, Luisa I. Falcón
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0169916

Diversity and composition of vaginal microbiota of pregnant women at risk for transmitting Group B Streptococcus treated with intrapartum penicillin
Cited by: 18
Author(s): Luiz Fernando Würdig Roesch, Rita de Cássia dos Santos Silveira, Andrea Corso, Priscila Caroline Thiago Dobbler, Volker Mai, Bruna Schafer Rojas, Álvaro Macedo Laureano, Renato S. Procianoy
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2018.00765

Response of Gut Microbiota to Metabolite Changes Induced by Endurance Exercise
Cited by: 130
Author(s): Xia Zhao, Zhujun Zhang, Bin Hu, Wei Huang, Chao Yuan, Lingyun Zou
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0114070

Large, Omega-3 Rich, Pelagic Diatoms under Arctic Sea Ice: Sources and Implications for Food Webs
Cited by: 22
Author(s): Steven W. Duerksen, Gregory W. Thiemann, Suzanne M. Budge, Michel Poulin, Andrea Niemi, Christine Michel
Software Mentions: 2
Published: almost 10 years ago

10.1186/1759-8753-5-1

Impact of ploidy level on the distribution of Pokey element insertions in the Daphnia pulex complex
Cited by: 1
Author(s): Roland Vergilino, Shannon H. C. Eagle, Teresa J. Crease
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0227354

Temporal and environmental drivers of fish-community structure in tropical streams from two contrasting regions in India
Cited by: 11
Author(s): Rubina Mondal, Anuradha Bhat
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0061088

Comparative RNA-Seq and Microarray Analysis of Gene Expression Changes in B-Cell Lymphomas of Canis familiaris
Cited by: 48
Author(s): Marie R. Mooney, Jeff Bond, Noel R. Monks, Emily Eugster, David Cherba, Pamela J. Berlinski, Steve Kamerling, Keith R. Marotti, Heather Simpson, Tony Rusk, Waibhav Tembe, Christophe Legendre, Hollie Benson, Winnie S. Liang, Craig P. Webb
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0152468

Disentangling the Role of Climate, Topography and Vegetation in Species Richness Gradients
Cited by: 60
Author(s): Mario R. Moura, Fabricio Villalobos, Gabriel C. Costa, Paulo Christiano de Anchieta Garcia
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2017.02126

The Patterns and Drivers of Bacterial and Fungal β-Diversity in a Typical Dryland Ecosystem of Northwest China
Cited by: 55
Author(s): Jianming Wang, Tianhan Zhang, Liping Li, Jingwen Li, Feng Yin, Qi Lu
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2017.02560

Host Specificity for Bacterial, Archaeal and Fungal Communities Determined for High- and Low-Microbial Abundance Sponge Species in Two Genera
Cited by: 28
Author(s): Maryam Chaib De Mares, Detmer Sipkema, Sixing Huang, Boyke Bunk, Jörg Overmann, Jan Dirk van Elsas
Software Mentions: 2
Published: almost 7 years ago

10.1128/mSystems.01017-20

Fungal Communities Are Important Determinants of Bacterial Community Composition in Deadwood
Cited by: 23
Author(s): Iñaki Odriozola, Nerea Abrego, Vojtěch Tláskal, Petra Zrůstová, Daniel Morais, Tomáš Větrovský, Otso Ovaskainen, Petr Baldrián
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0127781

Geographic Variation in Plant Community Structure of Salt Marshes: Species, Functional and Phylogenetic Perspectives
Cited by: 7
Author(s): Hongyu Guo, Scott Chamberlain, Eran Elhaik, Inder Jalli, Alana-Rose Lynes, Laurie B. Marczak, Niv Sabath, Amy Vargas, Kazimierz Więski, Emily M. Zelig, Steven C. Pennings
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2020.580081

Complete Genome Sequence of Enterobacter roggenkampii ED5, a Nitrogen Fixing Plant Growth Promoting Endophytic Bacterium With Biocontrol and Stress Tolerance Properties, Isolated From Sugarcane Root
Cited by: 53
Author(s): Dao-Jun Guo, Rajesh Kumar Singh, Pratiksha Singh, Dong-Ping Li, Anjney Sharma, Yong‐Xiu Xing, Xiu–Peng Song, Li‐Tao Yang, Yang–Rui Li
Software Mentions: 2
Published: about 4 years ago

10.3390/microorganisms8081169

Microbiome Diversity and Community-Level Change Points within Manure-Based Small Biogas Plants
Cited by: 12
Author(s): Susanne Theuerl, Johanna Klang, Benedikt Hülsemann, Torsten Mächtig, Julia Hassa
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2018.02462

Fungal Endophytic Communities of Two Wild Rosa Varieties With Different Powdery Mildew Susceptibilities
Cited by: 15
Author(s): Yi Zhao, Zichang Xiong, Guang-li Wu, Wei-xiao Bai, Zheng-qing Zhu, Yonghan Gao, Shobhika Parmar, Vijay Kumar Sharma, Haiyan Li
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2020.599614

Patterns of Relative and Quantitative Abundances of Marine Bacteria in Surface Waters of the Subtropical Northwest Pacific Ocean Estimated With High-Throughput Quantification Sequencing
Cited by: 11
Author(s): Jie Kong, Xin Liu, Lei Wang, Bangqin Huang, Danyun Ou, Jiayu Guo, Edward A. Laws, Bangqin Huang
Software Mentions: 2
Published: almost 4 years ago

10.3389/fmicb.2019.02238

Microbiomes in Soils Exposed to Naturally High Concentrations of CO2 (Bossoleto Mofette Tuscany, Italy)
Cited by: 8
Author(s): Stefano Fazi, Fabrizio Ungaro, Stefanía Venturi, Lara Vimercati, Carolina Cruz Viggi, Silvia Baronti, Francesca Ugolini, Costanza Calzolari, Franco Tassi, Orlando Vaselli, A. Raschi, Federico Aulenta
Software Mentions: 2
Published: about 5 years ago

10.1128/mSystems.01078-20

Complementary Roles of Wood-Inhabiting Fungi and Bacteria Facilitate Deadwood Decomposition
Cited by: 61
Author(s): Vojtěch Tláskal, Vendula Brabcová, Tomáš Větrovský, Mayuko Jomura, Rubén López-Mondéjar, Lummy Maria Oliveira Monteiro, J. Saraiva, Zander Rainier Human, Tomáš Cajthaml, Ulisses Nunes da Rocha, Petr Baldrián
Software Mentions: 2
Published: almost 4 years ago

10.3389/fmicb.2019.00163

Significant Differences in Bacterial and Potentially Pathogenic Communities Between Sympatric Hooded Crane and Greater White-Fronted Goose
Cited by: 23
Author(s): Xingjia Xiang, Fengling Zhang, Rong Fu, Shaomin Yan, Lizhi Zhou
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2021.693535

The Long-Term Effects of Using Phosphate-Solubilizing Bacteria and Photosynthetic Bacteria as Biofertilizers on Peanut Yield and Soil Bacteria Community
Cited by: 23
Author(s): Yiming Wang, Shuang Peng, Qingqing Hua, Chongwen Qiu, Pan Wu, Xiaoli Liu, Xiangui Lin
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2016.02142

Sampling Modification Effects in the Subgingival Microbiome Profile of Healthy Children
Cited by: 5
Author(s): Elisabeth Santigli, Slave Trajanoski, Katharina Eberhard, Barbara Klug
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0129857

Linking GPS Telemetry Surveys and Scat Analyses Helps Explain Variability in Black Bear Foraging Strategies
Cited by: 21
Author(s): Rémi Lesmerises, Lucie Rebouillat, Christian Dussault, Martin‐Hugues St‐Laurent
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2015.00824

Characterization of the gut microbiota of Kawasaki disease patients by metagenomic analysis
Cited by: 43
Author(s): Akiko Kinumaki, Tsuyoshi Sekizuka, Hiromichi Hamada, Kengo Kato, Akifumi Yamashita, Makoto Kuroda
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2019.00241

Factors Influencing Leaf- and Root-Associated Communities of Bacteria and Fungi Across 33 Plant Orders in a Grassland
Cited by: 36
Author(s): Hirokazu Toju, Hiroko Kurokawa, Tanaka Kenta
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2015.01519

Bacterial Diversity in Submarine Groundwater along the Coasts of the Yellow Sea
Cited by: 17
Author(s): Qi Ye, Jianan Liu, Jinzhou Du, Jing Zhang
Software Mentions: 2
Published: almost 9 years ago

10.3390/microorganisms9081767

Different Responses of Microbiota across Intestinal Tract to Enterococcus faecium HDRsEf1 and Their Correlation with Inflammation in Weaned Piglets
Cited by: 7
Author(s): Junlan Zhou, Ji Luo, Sen Yang, Qiling Xiao, Xiliang Wang, Zutao Zhou, Yufei Xiao, Deshi Shi
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2020.01587

Bacterial Communities of the Canola Rhizosphere: Network Analysis Reveals a Core Bacterium Shaping Microbial Interactions
Cited by: 13
Author(s): Jean-Baptiste Floc’h, Chantal Hamel, Newton Z. Lupwayi, K. Neil Harker, Mohamed Hijri, Marc St‐Arnaud
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2018.01392

Antarctic Cryptoendolithic Fungal Communities Are Highly Adapted and Dominated by Lecanoromycetes and Dothideomycetes
Cited by: 49
Author(s): Claudia Coleine, Jason E. Stajich, Laura Zucconi, Silvano Onofri, Nuttapon Pombubpa, Eleonora Egidi, Ashley E. Franks, Pietro Buzzini, Laura Selbmann
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2017.02203

Geochemical Influence on Microbial Communities at CO2-Leakage Analog Sites
Cited by: 15
Author(s): Baknoon Ham, Byoung Young Choi, Gi-Tak Chae, Matthew F. Kirk, Man Jae Kwon
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2021.623853

Graphene-Based Nanomaterials Modulate Internal Biofilm Interactions and Microbial Diversity
Cited by: 4
Author(s): Lauris Evariste, Paul Braylé, Florence Mouchet, Jérôme Silvestre, Laury Gauthier, Emmanuel Flahaut, Éric Pinelli, Maialen Barret
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0088141

Network Analysis Reveals Ecological Links between N-Fixing Bacteria and Wood-Decaying Fungi
Cited by: 98
Author(s): Björn Hoppe, Tiemo Kahl, Peter Karasch, Tesfaye Wubet, Jürgen Bauhus, François Buscot, Dirk Krüger
Software Mentions: 2
Published: almost 11 years ago

10.3390/microorganisms8030347

Aflatoxins: Occurrence, Exposure, and Binding to Lactobacillus Species from the Gut Microbiota of Rural Ugandan Children
Cited by: 12
Author(s): Alex Paul Wacoo, Prudence Atukunda, Grace Kyamazima Mehangye Muhoozi, Martin Braster, Marijke J. Wagner, Tim van den Broek, Wilbert Sybesma, Ane C. Westerberg, Per Ole Iversen, Remco Kort
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0025359

Spatial Genetic Structure of a Symbiotic Beetle-Fungal System: Toward Multi-Taxa Integrated Landscape Genetics
Cited by: 59
Author(s): Patrick M. A. James, David W. Coltman, Brent W. Murray, Richard Hamelin, Felix A. H. Sperling
Software Mentions: 2
Published: about 13 years ago

10.3389/fmicb.2018.00213

Body Mass Index and Sex Affect Diverse Microbial Niches within the Gut
Cited by: 79
Author(s): Francesca Borgo, Stefania Garbossa, Alessandra Riva, Marco Severgnini, Carmelo Luigiano, Albero Benetti, Antonio E. Pontiroli, Giulia Morace, Elisa Borghi
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2016.00689

Metagenomic Analysis of the Rumen Microbiome of Steers with Wheat-Induced Frothy Bloat
Cited by: 65
Author(s): Dipti Pitta, W. E. Pinchak, Nagaraju Indugu, Bonnie Vecchiarelli, Rohini Sinha, J. D. Fulford
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2019.00088

Shift in Bacterial Community Structure Drives Different Atrazine-Degrading Efficiencies
Cited by: 15
Author(s): Xiaowei Liu, Kai Chen, Shaochuang Chuang, Xihui Xu, Jiandong Jiang
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2020.01938

Distinct Temporal Succession of Bacterial Communities in Early Marine Biofilms in a Portuguese Atlantic Port
Cited by: 26
Author(s): Jorge T. Antunes, António G G Sousa, Joana Azevedo, Adriana Rego, Pedro N. Leão, Vítor Vasconcelos
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2019.00797

Characterization of the Early Life Microbiota Development and Predominant Lactobacillus Species at Distinct Gut Segments of Low- and Normal-Birth-Weight Piglets
Cited by: 37
Author(s): Na Li, Shimeng Huang, Lili Jiang, Zhaolai Dai, Tiantian Li, Dandan Han, Junjun Wang
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2021.672656

The Abundance of the nifH Gene Became Higher and the nifH-Containing Diazotrophic Bacterial Communities Changed During Primary Succession in the Hailuogou Glacier Chronosequence, China
Cited by: 3
Author(s): Yingyan Wang, Yulan Chen, Qinyu Xue, Quanju Xiang, Ke Zhao, Xiumei Yu, Qiang Chen, Menggen Ma, Hao Jiang, Xiaoping Zhang, Petri Penttinen, Yunfu Gu
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2016.00214

Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?
Cited by: 427
Author(s): Emily B. Graham, Joseph E. Knelman, Andreas Schindlbacher, Steven D. Siciliano, Marc Breulmann, Anthony C. Yannarell, J. Michael Beman, Guy C. J. Abell, Laurent Philippot, James I. Prosser, Arnaud Foulquier, Jorge Curiel Yuste, Helen Glanville, Davey L. Jones, Roey Angel, Jani Salminen, Ryan J. Newton, Helmut Bürgmann, Lachlan J. Ingram, Ute Hamer, Henri Siljanen, Krista Peltoniemi, Karin Potthast, Lluís Bañeras, Martin Hartmann, Samiran Banerjee, Ri Qing Yu, Géraldine Nogaro, Andreas Richter, Marianne Koranda, Sarah C. Castle, Marta Goberna, Bongkeun Song, Amitava Chatterjee, Olga C. Nunes, Ana Rita Lopes, Yiping Cao, Aurore Kaisermann, Sara Hallin, Michael S. Strickland, Jordi Garcia‐Pausas, Josep Barba, Hojeong Kang, Kazuo Isobe, Sokratis Papaspyrou, Roberta Pastorelli, Alessandra Lagomarsino, Eva S. Lindström, Nathan Basiliko, Diana R. Nemergut
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0180820

Responses of molluscan communities to centuries of human impact in the northern Adriatic Sea
Cited by: 31
Author(s): Ivo Gallmetzer, Alexandra Haselmair, Adam Tomášových, Michael Stachowitsch, Martin Zuschin
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0125844

Microbial Community in High Arsenic Shallow Groundwater Aquifers in Hetao Basin of Inner Mongolia, China
Cited by: 39
Author(s): Ping Li, Yanhong Wang, Xinyue Dai, Rui Zhang, Zhou Jiang, Dawei Jiang, Shang Wang, Hongchen Jiang, Yanxin Wang, Hailiang Dong
Software Mentions: 2
Published: over 9 years ago

10.3390/microorganisms9091793

The Intestinal Bacterial Community and Functional Potential of Litopenaeus vannamei in the Coastal Areas of China
Cited by: 7
Author(s): Yimeng Cheng, Chaorong Ge, Wei Li, Huaiying Yao
Software Mentions: 2
Published: over 3 years ago

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