cran: vegan | Projects | Ecosyste.ms: Papers

10.1186/1471-2229-10-244

High diversity of root associated fungi in both alpine and arctic Dryas octopetala
Cited by: 106
Author(s): Marit Frederikke Markussen Bjorbækmo, Tor Carlsen, Anne K. Brysting, Trude Vrålstad, Klaus Høiland, Karl I. Ugland, József Geml, Trond Schumacher, Håvard Kauserud
Software Mentions: 2
Published: almost 16 years ago

10.1098/rspb.2021.0354

Negative resistance and resilience: biotic mechanisms underpin delayed biological recovery in stream restoration
Cited by: 9
Author(s): Isabelle C. Barrett, Angus R. McIntosh, Catherine M. Febria, Helen J. Warburton
Software Mentions: 2
Published: over 5 years ago

10.1098/rspb.2021.0329

Artificial shorelines lack natural structural complexity across scales
Cited by: 13
Author(s): Peter J. Lawrence, Ally J. Evans, Tim Jackson-Bué, Paul R. Brooks, Tasman P. Crowe, Amy E. Dozier, Stuart R. Jenkins, Pippa J. Moore, Gareth J. Williams, Andrew J. Davies
Software Mentions: 2
Published: over 5 years ago

10.1186/s12870-018-1500-5

Structural diversity across arbuscular mycorrhizal, ectomycorrhizal, and endophytic plant–fungus networks
Cited by: 9
Author(s): Hirokazu Toju, Hirotoshi Sato, Satoshi Yamamoto, Akifumi S. Tanabe
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12870-020-02535-9

Plant performance of enhancing licorice with dual inoculating dark septate endophytes and Trichoderma viride mediated via effects on root development
Cited by: 18
Author(s): Chunguang He, Wenquan Wang, Jiaxin Hou
Software Mentions: 2
Published: over 6 years ago

10.1073/pnas.1814487116

Diversity partitioning in Phanerozoic benthic marine communities
Cited by: 19
Author(s): Richard Hofmann, Melanie Tietje, Martin Aberhan
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12887-016-0724-5

A comparison of intestinal microbiota in a population of low-risk infants exposed and not exposed to intrapartum antibiotics: The Baby & Microbiota of the Intestine cohort study protocol
Cited by: 22
Author(s): Julia Simioni, Eileen K. Hutton, Elizabeth Gunn, Alison C. Holloway, Jennifer C. Stearns, Helen McDonald, Andrea Mousseau, Jonathan D. Schertzer, Elyanne M. Ratcliffe, Lehana Thabane, Michael G. Surette, Katherine M. Morrison
Software Mentions: 2
Published: almost 10 years ago

10.1186/s42523-019-0010-6

The microbiome of the invertebrate model host Galleria mellonella is dominated by Enterococcus
Cited by: 30
Author(s): Camille Nina Allonsius, Wannes Van Beeck, Ilke De Boeck, Stijn Wittouck, Sarah Lebeer
Software Mentions: 2
Published: about 7 years ago

10.1098/rsos.150370

The history of introduction of the African baobab (<i>Adansonia digitata</i>, Malvaceae: Bombacoideae) in the Indian subcontinent
Cited by: 20
Author(s): Karen L. Bell, Haripriya Rangan, Christian A. Kull, Daniel J. Murphy
Software Mentions: 2
Published: about 11 years ago

10.1098/rsos.150409

Integrating molecular, phenotypic and environmental data to elucidate patterns of crocodile hybridization in Belize
Cited by: 21
Author(s): Evon R. Hekkala, Steven G. Platt, John B. Thorbjarnarson, Thomas R. Rainwater, Michael Tessler, Seth W. Cunningham, Christopher P. Twomey, George Amato
Software Mentions: 2
Published: about 11 years ago

10.1098/rsos.160229

Depth and substratum differentiations among coexisting herbivorous cichlids in Lake Tanganyika
Cited by: 5
Author(s): Hiroki Hata, Haruki Ochi
Software Mentions: 2
Published: almost 10 years ago

10.1098/rsos.160525

The potential of electricity transmission corridors in forested areas as bumblebee habitat
Cited by: 25
Author(s): Bruce Hill, Ignasi Bartomeus
Software Mentions: 2
Published: almost 10 years ago

10.1098/rsos.160635

Next-generation freshwater bioassessment: eDNA metabarcoding with a conserved metazoan primer reveals species-rich and reservoir-specific communities
Cited by: 77
Author(s): Nicholas K. M. Lim, Y. C. Tay, Amrita Srivathsan, Jonathan W. T. Tan, Jeffrey T. B. Kwik, Bilgenur Baloğlu, Rudolf Meier, Darren C. J. Yeo
Software Mentions: 2
Published: almost 10 years ago

10.1098/rsos.160712

Thermally moderated firefly activity is delayed by precipitation extremes
Cited by: 9
Author(s): Sara L. Hermann, Saisi Xue, Logan Rowe, Elizabeth Davidson-Lowe, Andrew C. Myers, Bahodir Eshchanov, Christie A. Bahlai
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12903-018-0699-8

Plaque biofilm microbial diversity in infants aged 12 months and their mothers with or without dental caries: a pilot study
Cited by: 7
Author(s): Danying Tao, Fĕi Li, Xiping Feng, Chun Hung Chu, Hai‐Xia Lu
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12903-018-0520-8

Apical periodontitis: preliminary assessment of microbiota by 16S rRNA high throughput amplicon target sequencing
Cited by: 25
Author(s): Federico Mussano, Ilario Ferrocino, Natalija Gavrilova, Tullio Genova, Alessandro Dell’Acqua, Luca Simone Cocolin, Stefano Carossa
Software Mentions: 2
Published: over 8 years ago

10.1098/rsos.170215

Signatures of the collapse and incipient recovery of an overexploited marine ecosystem
Cited by: 48
Author(s): Eric J. Pedersen, Patrick L. Thompson, R. Aaron Ball, Marie‐Josée Fortin, Tarik C. Gouhier, Heike Link, Charlotte Moritz, Hedvig Nenzen, Ryan R. E. Stanley, Zofia E. Taranu, Andrew Gonzalez, Frédéric Guichard, Pierre Pepin
Software Mentions: 2
Published: over 9 years ago

10.1098/rsos.170549

Macrofouling communities and the degradation of plastic bags in the sea: an <i>in situ</i> experiment
Cited by: 42
Author(s): Nora‐Charlotte Pauli, Jana S. Petermann, Christian Lott, Miriam Weber
Software Mentions: 2
Published: about 9 years ago

10.1098/rsos.171394

Range-wide parallel climate-associated genomic clines in Atlantic salmon
Cited by: 34
Author(s): Nicholas W. Jeffery, Ryan R. E. Stanley, Brendan F. Wringe, Javier Guijarro-Sabaniel, Vincent Bourret, Louis Bernatchez, Paul Bentzen, Robert G. Beiko, John Gilbey, Marie Clément, Ian Bradbury
Software Mentions: 2
Published: almost 9 years ago

10.1098/rsos.172130

Morphometric assessment of pterosaur jaw disparity
Cited by: 11
Author(s): Charlie A. Navarro, Elizabeth Martin‐Silverstone, Thomas L. Stubbs
Software Mentions: 2
Published: over 8 years ago

10.1098/rsos.180382

Ecology of sleeping: the microbial and arthropod associates of chimpanzee beds
Cited by: 6
Author(s): Megan S. Thoemmes, Fiona Stewart, R. Adriana Hernández‐Aguilar, Matthew A. Bertone, David A. Baltzegar, Russell J. Borski, Naomi Cohen, Kaitlin P. Coyle, A. Piel, Robert R. Dunn
Software Mentions: 2
Published: over 8 years ago

10.1098/rsos.181068

Host species, pathogens and disease associated with divergent nasal microbial communities in tortoises
Cited by: 10
Author(s): Chava L. Weitzman, Franziska C. Sandmeier, C. Richard Tracy
Software Mentions: 2
Published: about 8 years ago

10.1098/rsos.181693

Consortia of anti-nematode fungi and bacteria in the rhizosphere of soybean plants attacked by root-knot nematodes
Cited by: 18
Author(s): Hirokazu Toju, Yu Tanaka
Software Mentions: 2
Published: over 7 years ago

10.1098/rsos.190319

Body coloration and mechanisms of colour production in Archelosauria: the case of deirocheline turtles
Cited by: 18
Author(s): Jindřich Brejcha, José Vicente Bataller, Zuzana Bosáková, Jan Géryk, Martina Havlíková, Karel Kleisner, Petr Maršík, Enrique Font
Software Mentions: 2
Published: over 7 years ago

10.1098/rsos.190913

Extensive sampling reveals the phenology and habitat use of Afrotropical parasitoid wasps (Hymenoptera: Ichneumonidae: Rhyssinae)
Cited by: 4
Author(s): Tapani Hopkins, Heikki Roininen, Ilari E. Sääksjärvi
Software Mentions: 2
Published: about 7 years ago

10.1186/s12866-021-02233-y

Optimisation of sample storage and DNA extraction for human gut microbiota studies
Cited by: 23
Author(s): Jekaterina Kazantseva, Esther Malv, Aleksei Kaleda, Aili Kallastu, Anne Meikas
Software Mentions: 2
Published: over 5 years ago

10.1098/rsos.191582

Functional volumes, niche packing and species richness: biogeographic legacies in the Congo Basin
Cited by: 6
Author(s): Frederik Van de Perre, Michael R. Willig, Steven J. Presley, Itoka Mukinzi, M. Gambalemoke, Herwig Leirs, Erik Verheyen
Software Mentions: 2
Published: over 6 years ago

10.1098/rsos.201637

Bipartite network analysis of ant-task associations reveals task groups and absence of colonial daily activity
Cited by: 0
Author(s): Haruna Fujioka, Yasukazu Okada, Masato S. Abe
Software Mentions: 2
Published: almost 6 years ago

10.1098/rsos.201522

Infected juvenile salmon can experience increased predation during freshwater migration
Cited by: 24
Author(s): Nathan B. Furey, Arthur L. Bass, Kristi Miller, Shaorong Li, Andrew G. Lotto, Stephen J. Healy, S. Matthew Drenner, Scott G. Hinch
Software Mentions: 2
Published: over 5 years ago

10.1186/s12866-020-01817-4

Viral metagenomic analysis of fecal samples reveals an enteric virome signature in irritable bowel syndrome
Cited by: 19
Author(s): Mina Ansari, Mehregan Ebrahimi, Mohammad Reza Fattahi, Michael G. Gardner, Ali Reza Safarpour, Mohammad Ali Faghihi, Kamran Bagheri Lankarani
Software Mentions: 2
Published: over 6 years ago

10.34133/2021/7102769

Soil Biogeochemical Cycle Couplings Inferred from a Function-Taxon Network
Cited by: 28
Author(s): Bin Ma, Erinne Stirling, Yuanhui Liu, Kankan Zhao, Jizhong Zhou, Brajesh K. Singh, Caixian Tang, Randy A. Dahlgren, Jianming Xu
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12931-021-01724-w

Divergent airway microbiomes in lung transplant recipients with or without pulmonary infection
Cited by: 6
Author(s): Lisa I. Påhlman, Lokeshwaran Manoharan, Anna Stjärne Aspelund
Software Mentions: 2
Published: over 5 years ago

10.1126/sciadv.aap7399

Manipulation of host and parasite microbiotas: Survival strategies during chronic nematode infection
Cited by: 90
Author(s): Emily White, Ashley Houlden, Allison J. Bancroft, Kelly S. Hayes, Marie Goldrick, Richard K. Grencis, Ian S. Roberts
Software Mentions: 2
Published: over 8 years ago

10.1126/sciadv.aau9124

Antibiotic resistance in European wastewater treatment plants mirrors the pattern of clinical antibiotic resistance prevalence
Cited by: 301
Author(s): Katariina Pärnänen, Carlos Narciso-da-Rocha, David Kneis, Thomas U. Berendonk, Damiano Cacace, Thi Thuy, Christian Elpers, Despo Fatta‐Kassinos, Isabel Henriques, Thomas Jaeger, Antti Karkman, José Luis Martínez, Stella G. Michael, I. Michael-Kordatou, Kristin O’Sullivan, Sara Rodríguez-Mozaz, Thomas Schwartz, Hongjie Sheng, Henning Sørum, Robert D. Stedtfeld, James M. Tiedje, Saulo Varela Della Giustina, Fiona Walsh, Ivone Vaz‐Moreira, Marko Virta, Célia M. Manaia
Software Mentions: 2
Published: over 7 years ago

10.1038/s41396-019-0436-6

Microbial succession on decomposing root litter in a drought-prone Scots pine forest
Cited by: 67
Author(s): Claude Herzog, Martin Hartmann, Beat Frey, Beat Stierli, Cornélia Rumpel, Nina Buchmann, Ivano Brunner
Software Mentions: 2
Published: over 7 years ago

10.1186/s12866-020-01949-7

Biological observations in microbiota analysis are robust to the choice of 16S rRNA gene sequencing processing algorithm: case study on human milk microbiota
Cited by: 14
Author(s): Shirin Moossavi, Faisal Atakora, Kelsey Fehr, Ehsan Khafipour
Software Mentions: 2
Published: about 6 years ago

10.1038/s41597-019-0308-y

Growth phase proteomics of the heterotrophic marine bacterium Ruegeria pomeroyi
Cited by: 2
Author(s): Dasha Krayushkina, Emma Timmins‐Schiffman, Jessica F. Faux, Damon May, Michael Riffle, H. Rodger Harvey, Brook L. Nunn
Software Mentions: 2
Published: almost 7 years ago

10.1038/srep08496

Temperature and solids retention time control microbial population dynamics and volatile fatty acid production in replicated anaerobic digesters
Cited by: 98
Author(s): Inka Vanwonterghem, Paul D. Jensen, Korneel Rabaey, Gene W. Tyson
Software Mentions: 2
Published: over 11 years ago

10.1038/srep09316

Elevated CO2 shifts the functional structure and metabolic potentials of soil microbial communities in a C4 agroecosystem
Cited by: 39
Author(s): Jinbo Xiong, Zhili He, Shaojun Shi, Angela D. Kent, Ye Deng, Liyou Wu, Joy D. Van Nostrand, Jizhong Zhou
Software Mentions: 2
Published: over 11 years ago

10.1186/s42523-020-00026-8

Cloacal swabs and alcohol bird specimens are good proxies for compositional analyses of gut microbial communities of Great tits (Parus major)
Cited by: 21
Author(s): Kasun H. Bodawatta, Kateřina Pužejová, Kateřina Sam, Michael Poulsen, Knud A. Jønsson
Software Mentions: 2
Published: over 6 years ago

10.1038/srep10189

Variation in koala microbiomes within and between individuals: effect of body region and captivity status
Cited by: 72
Author(s): Niccolò Alfano, Alexandre Courtiol, Hanna Vielgrader, Peter Timms, Alfred L. Roca, Alex D. Greenwood
Software Mentions: 2
Published: over 11 years ago

10.1038/srep11569

The effect of land-use on the diversity and mass-abundance relationships of understory avian insectivores in Sri Lanka and southern India
Cited by: 20
Author(s): Rachakonda Sreekar, Umesh Srinivasan, Christos Mammides, Jin Chen, Uromi Manage Goodale, Sarath W. Kotagama, Swati Sidhu, Eben Goodale
Software Mentions: 2
Published: over 11 years ago

10.1038/srep11826

Pros and cons of methylation-based enrichment methods for ancient DNA
Cited by: 54
Author(s): Andaine Seguin-Orlando, Cristina Gamba, Clio Der Sarkissian, Luca Ermini, G. Louvel, Eugenia Boulygina, Alexey Sokolov, Artem Nedoluzhko, Eline D. Lorenzen, Patricio M. Lopez, H. Gregory McDonald, Eric Scott, Alexei Tikhonov, Thomas W. Stafford, Ahmed H. Alfarhan, Saleh A. Alquraishi, Khaled A. S. Al‐Rasheid, Beth Shapiro, Eske Willerslev, Egor Prokhortchouk, Ludovic Orlando
Software Mentions: 2
Published: over 11 years ago

10.1038/srep12263

Water regime history drives responses of soil Namib Desert microbial communities to wetting events
Cited by: 48
Author(s): Aline Frossard, Jean‐Baptiste Ramond, Mary Seely, Don A. Cowan
Software Mentions: 2
Published: about 11 years ago

10.1038/srep16224

Forager bees (Apis mellifera) highly express immune and detoxification genes in tissues associated with nectar processing
Cited by: 52
Author(s): Rachel L. Vannette, Abbas Sheikh Mohamed, Brian R. Johnson
Software Mentions: 2
Published: almost 11 years ago

10.1038/srep16587

Spatial distribution patterns of ammonia-oxidizing archaea abundance in subtropical forests at early and late successional stages
Cited by: 6
Author(s): Jie Chen, Hui Zhang, Wei Liu, Juyu Lian, Wanhui Ye, Wei Shen
Software Mentions: 2
Published: almost 11 years ago

10.1038/srep16814

Circulating microbial RNA and health
Cited by: 16
Author(s): R. C. K. Leung, Yongda Wu
Software Mentions: 2
Published: almost 11 years ago

10.1186/s12866-021-02150-0

Culture-dependent and culture-independent characterization of bacterial community diversity in different types of sandy lands: the case of Minqin County, China
Cited by: 14
Author(s): Yali Wei, Fang Wang, Jiyun Gao, Yongji Huang, Wei Ren, Hongmei Sheng
Software Mentions: 2
Published: over 5 years ago

10.1186/s42523-020-00053-5

Recovery and resiliency of skin microbial communities on the southern leopard frog (Lithobates sphenocephalus) following two biotic disturbances
Cited by: 5
Author(s): Denita Mychele Weeks, Matthew J. Parris, Shawn P. Brown
Software Mentions: 2
Published: about 6 years ago

10.1038/srep18787

The nature of Ordovician limestone-marl alternations in the Oslo-Asker District (Norway): witnesses of primary glacio-eustasy or diagenetic rhythms?
Cited by: 23
Author(s): Chloé E. A. Amberg, Tim Collart, Wout Salenbien, Lisa M. Egger, Axel Munnecke, Arne Thorshøj Nielsen, Claude Monnet, Øyvind Hammer, Thijs R.A. Vandenbroucke
Software Mentions: 2
Published: almost 11 years ago

10.1038/srep22806

Bacterial associations reveal spatial population dynamics in Anopheles gambiae mosquitoes
Cited by: 94
Author(s): Moritz Buck, Louise K. J. Nilsson, Carl Brunius, Roch K. Dabiré, Richard Hopkins, Olle Terenius
Software Mentions: 2
Published: over 10 years ago

10.1038/srep23055

Fipronil application on rice paddy fields reduces densities of common skimmer and scarlet skimmer
Cited by: 33
Author(s): Atsushi Kasai, Takehiko I. Hayashi, Hitoshi Ohnishi, Kazutaka Suzuki, Daisuke Hayasaka, Koichi Goka
Software Mentions: 2
Published: over 10 years ago

10.1038/srep24711

Flow directionality, mountain barriers and functional traits determine diatom metacommunity structuring of high mountain streams
Cited by: 62
Author(s): Xiaoyu Dong, Bin Li, Fengzhi He, Yang Gu, Meiqin Sun, Haomiao Zhang, Lu Tan, Wen Xiao, Shuoran Liu, Qinghua Cai
Software Mentions: 2
Published: over 10 years ago

10.1038/srep24965

The utility of DNA metabarcoding for studying the response of arthropod diversity and composition to land-use change in the tropics
Cited by: 81
Author(s): Kingsly C. Beng, Kyle W. Tomlinson, Xian Shen, Yann Surget‐Groba, Alice C. Hughes, J. W. Ferry Slik
Software Mentions: 2
Published: over 10 years ago

10.1038/srep26035

Marked variation between winter and spring gut microbiota in free-ranging Tibetan Macaques (Macaca thibetana)
Cited by: 129
Author(s): Binghua Sun, Xi Wang, Sofi Bernstein, Michael A. Huffman, Dong Xia, Zhiyuan Gu, Rui Chen, Lori K. Sheeran, R. Steven Wagner, Jinhua Li
Software Mentions: 2
Published: over 10 years ago

10.1038/srep26528

Fungal communities in sediments of subtropical Chinese seas as estimated by DNA metabarcoding
Cited by: 34
Author(s): Wei Li, Meng Meng Wang, Xi Guang Wang, Xiangdong Cheng, Jiajia Guo, Xiao Meng Bian, Lei Cai
Software Mentions: 2
Published: over 10 years ago

10.1038/srep26674

Predictive value of the composition of the vaginal microbiota in bacterial vaginosis, a dynamic study to identify recurrence-related flora
Cited by: 36
Author(s): Botao Xiao, Xiaoxi Niu, Ning Han, Ben Wang, Pengcheng Du, Risu Na, Chen Chen, Qinping Liao
Software Mentions: 2
Published: over 10 years ago

10.1186/s12866-019-1601-9

Diet is not the primary driver of bacterial community structure in the gut of litter-feeding cockroaches
Cited by: 21
Author(s): Niclas Lampert, Aram Mikaelyan, Andreas Brune
Software Mentions: 2
Published: almost 7 years ago

10.1038/srep28990

High Fat Diets Induce Colonic Epithelial Cell Stress and Inflammation that is Reversed by IL-22
Cited by: 232
Author(s): Max Gulhane, Lydia S. Murray, Rohan Lourie, Hui Tong, Yonghua Sheng, Ran Wang, Alicia Kang, Veronika Schreiber, Kuan Yau Wong, Graham Magor, Stuart E. Denman, Jakob Begun, Timothy H. Florin, Andrew C. Perkins, Páraic Ó Cuív, Michael A. McGuckin, Sumaira Z. Hasnain
Software Mentions: 2
Published: over 10 years ago

10.1186/s12866-020-01895-4

Characterization of the bacterial communities of psyllids associated with Rutaceae in Bhutan by high throughput sequencing
Cited by: 19
Author(s): Jennifer L. Morrow, Namgay Om, G. A. C. Beattie, Grant Chambers, N. J. Donovan, L. W. Liefting, Markus Riegler, Paul Holford
Software Mentions: 2
Published: about 6 years ago

10.1038/srep30553

Coupling among Microbial Communities, Biogeochemistry and Mineralogy across Biogeochemical Facies
Cited by: 25
Author(s): James C. Stegen, Allan Konopka, James P. McKinley, Chris Murray, Lin X, M. Miller, David W. Kennedy, Erin A. Miller, Charles T. Resch, Jim K. Fredrickson
Software Mentions: 2
Published: about 10 years ago

10.1186/s12866-019-1689-y

Long-term impact of fecal transplantation in healthy volunteers
Cited by: 44
Author(s): Oleg V. Goloshchapov, Evgenii I. Olekhnovich, С В Сидоренко, Ivan S. Moiseev, Maxim A. Kucher, Dmitry E. Fedorov, Alexander V. Pavlenko, Alexander I. Manolov, Vladimir Gostev, Vladimir A. Veselovsky, Ksenia M. Klimina, Elena S. Kostryukova, Evgeny Bakin, Alexander N. Shvetcov, Э. Д. Гумбатова, Ruslana V. Klementeva, А. А. Щербаков, М. В. Горчакова, Juan José Egozcue, Vera Pawlowsky‐Glahn, Maria A. Suvorova, А. Б. Чухловин, Vadim M. Govorun, Elena N. Ilina, Boris Afanasyev
Software Mentions: 2
Published: almost 7 years ago

10.1093/ajcn/nqaa388

Remodeling of the gut microbiome during Ramadan-associated intermittent fasting
Cited by: 56
Author(s): Junhong Su, Yueying Wang, Xiaofang Zhang, Mingfu Ma, Zhenrong Xie, Qiuwei Pan, Zhiyong Ma, Maikel P. Peppelenbosch
Software Mentions: 2
Published: over 5 years ago

10.1038/srep34041

Sexually dimorphic gene expressions in eels: useful markers for early sex assessment in a conservation context
Cited by: 27
Author(s): Benjamin Geffroy, Florian Guilbaud, Elsa Amilhat, Laurent Beaulaton, Matthias Vignon, Emmanuel Huchet, Jacques Rives, Julien Bobe, Alexis Fostier, Yann Guiguen, Agnès Bardonnet
Software Mentions: 2
Published: about 10 years ago

10.1038/srep35420

Functional diversity exhibits a diverse relationship with area, even a decreasing one
Cited by: 47
Author(s): Elpida Karadimou, Athanasios S. Kallimanis, Ioannis Tsiripidis, Panayotis Dimopoulos
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep35882

The human laryngeal microbiome: effects of cigarette smoke and reflux
Cited by: 34
Author(s): Marie E. Jetté, Kimberly A. Dill‐McFarland, Alissa S. Hanshew, Garret Suen, Susan L. Thibeault
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep35971

Changes in microbial communities, photosynthesis and calcification of the coral Acropora gemmifera in response to ocean acidification
Cited by: 16
Author(s): Guowei Zhou, Tao Yuan, Chunye Lin, Weipeng Zhang, Renmao Tian, Haoya Tong, Lei Jiang, Xiangcheng Yuan, Sheng Liu, Pei‐Yuan Qian, Hui Huang
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep36067

Microbial community dynamics in the rhizosphere of a cadmium hyper-accumulator
Cited by: 46
Author(s): Jennifer L. Wood, C Zhang, Elizabeth R. Mathews, Caixian Tang, Ashley E. Franks
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep36550

Bacterial community structure and function shift along a successional series of tidal flats in the Yellow River Delta
Cited by: 77
Author(s): Xiaofei Lv, Ben Ma, Junbao Yu, Scott X. Chang, Jianming Xu, Yunzhao Li, Guangmei Wang, Guoqi Han, Bo Guan, Xiaoqing Chu
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep36672

Tree species, tree genotypes and tree genotypic diversity levels affect microbe-mediated soil ecosystem functions in a subtropical forest
Cited by: 23
Author(s): Witoon Purahong, Walter Durka, Markus Fischer, Sven Dommert, Ricardo Schöps, François Buscot, Tesfaye Wubet
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12866-016-0660-4

Changes of diet and dominant intestinal microbes in farmland frogs
Cited by: 57
Author(s): Chun Wen Chang, Bing Huang, Si Min Lin, C. C. Huang, Pei Chun Liao
Software Mentions: 2
Published: over 10 years ago

10.1038/srep37929

Variations in abundance, diversity and community composition of airborne fungi in swine houses across seasons
Cited by: 44
Author(s): Priyanka Kumari, Cheolwoon Woo, Naomichi Yamamoto, Hee Sun Choi
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep38263

Hill number as a bacterial diversity measure framework with high-throughput sequence data
Cited by: 29
Author(s): Sanghoon Kang, Jorge L. M. Rodrigues, Justin P. Ng, Terry J. Gentry
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep38709

Regional variations in the diversity and predicted metabolic potential of benthic prokaryotes in coastal northern Zhejiang, East China Sea
Cited by: 33
Author(s): Kai Wang, Xiansen Ye, Huajun Zhang, Heping Chen, Demin Zhang, Lian Liu
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep38893

The biogeography of soil archaeal communities on the eastern Tibetan Plateau
Cited by: 41
Author(s): Yu Shi, Jonathan M. Adams, Yingying Ni, Teng Yang, Xin Jing, Litong Chen, Jin‐Sheng He, Haiyan Chu
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep40189

Diel-scale temporal dynamics recorded for bacterial groups in Namib Desert soil
Cited by: 34
Author(s): Eoin Gunnigle, Aline Frossard, Jean‐Baptiste Ramond, Leandro D. Guerrero, Mary Seely, Don A. Cowan
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep40519

Population expansions dominate demographic histories of endemic and widespread Pacific reef fishes
Cited by: 32
Author(s): Erwan Delrieu‐Trottin, Stefano Mona, Jeffrey Maynard, Valentina Neglia, Michel Veuille, Serge Planes
Software Mentions: 2
Published: over 9 years ago

10.1038/srep40864

Microbial succession in the gastrointestinal tract of dairy cows from 2 weeks to first lactation
Cited by: 124
Author(s): Kimberly A. Dill‐McFarland, Jacob D. Breaker, Garret Suen
Software Mentions: 2
Published: over 9 years ago

10.1038/srep43032

A Phylogenetic Perspective on Biogeographical Divergence of the Flora in Yunnan, Southwestern China
Cited by: 11
Author(s): Shuiyin Liu, Huan Zhu, Jie Yang
Software Mentions: 2
Published: over 9 years ago

10.1038/srep43150

Response of rhizosphere soil microbial to Deyeuxia angustifolia encroaching in two different vegetation communities in alpine tundra
Cited by: 14
Author(s): Li Lin, Xing Ming, Jingling Lv, Xiaolong Wang, Xia Chen
Software Mentions: 2
Published: over 9 years ago

10.1038/srep45134

The influence of environmental factors on communities of arbuscular mycorrhizal fungi associated with Chenopodium ambrosioides revealed by MiSeq sequencing investigation
Cited by: 64
Author(s): Xihui Xu, Chen Chen, Zhou Zhang, Zehua Sun, Yahua Chen, Jiandong Jiang, Zhenguo Shen
Software Mentions: 2
Published: over 9 years ago

10.1038/srep45220

A distinct bacterial dysbiosis associated skin inflammation in ovine footrot
Cited by: 23
Author(s): Grazieli Maboni, Adam Blanchard, Sara Frosth, Ceri E. Stewart, Richard D. Emes, Sabine Tötemeyer
Software Mentions: 2
Published: over 9 years ago

10.1186/s12866-020-01871-y

Cow manure application effectively regulates the soil bacterial community in tea plantation
Cited by: 28
Author(s): Shuning Zhang, Litao Sun, Yu Wang, Kai Fan, Qingshan Xu, Yusheng Li, Qingping Ma, Wang Ji-guo, Wanming Ren, Zhaotang Ding
Software Mentions: 2
Published: over 6 years ago

10.1186/s12866-020-01901-9

Examining the relationship between maternal body size, gestational glucose tolerance status, mode of delivery and ethnicity on human milk microbiota at three months post-partum
Cited by: 19
Author(s): Lauren LeMay-Nedjelski, James Butcher, Sylvia H. Ley, Michelle R. Asbury, Anthony J. Hanley, Alex Kiss, Sharon Unger, John W. Copeland, Pauline W. Wang, Bernard Zinman, Alain Stintzi, Deborah L. O’Connor
Software Mentions: 2
Published: about 6 years ago

10.1038/ismej.2017.166

Aquatic urban ecology at the scale of a capital: community structure and interactions in street gutters
Cited by: 11
Author(s): Vincent Hervé, Boris Leroy, Albert Da Silva Pires, Pascal J. Lopez
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-00328-z

Exploring the diversity of blood-sucking Diptera in caves of Central Africa
Cited by: 10
Author(s): Judicaël Obame-Nkoghe, Nil Rahola, Diégo Ayala, Patrick Yangari, Davy Jiolle, Xavier Allène, Mathieu Bourgarel, Gaël Darren Maganga, Nicolás Berthet, Eric M. Leroy, Christophe Paupy
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-01359-2

Effect of spatio-temporal shifts in salinity combined with other environmental variables on the ecological processes provided by Zostera noltei meadows
Cited by: 13
Author(s): Ana I. Sousa, Ricardo Calado, Daniel F. R. Cleary, Cláudia Nunes, Manuel A. Coimbra, João Serôdio, Ana I. Lillebø
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-02258-2

Effects of replacing Leymus chinensis with whole-crop wheat hay on Holstein bull apparent digestibility, plasma parameters, rumen fermentation, and microbiota
Cited by: 19
Author(s): Wen-jing Niu, Yang He, Chuanqi Xia, Muhammad Aziz Rahman, Qinghua Qiu, Tao Shao, Yixun Liang, Linbao Ji, Haibo Wang, Binghai Cao
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-02363-2

Seasonal soil microbial responses are limited to changes in functionality at two Alpine forest sites differing in altitude and vegetation
Cited by: 63
Author(s): J.A. Siles, Rosa Margesin
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-02656-6

Host-specific assembly of sponge-associated prokaryotes at high taxonomic ranks
Cited by: 33
Author(s): Georg Steinert, Sven Rohde, Dorte Janussen, Claudia Blaurock, Peter J. Schupp
Software Mentions: 2
Published: over 9 years ago

10.1186/1471-2180-12-25

Influence of wet distillers grains diets on beef cattle fecal bacterial community structure
Cited by: 47
Author(s): W. C. Rice, M. L. Galyean, Stephen B. Cox, Scot E. Dowd, N. A. Cole
Software Mentions: 2
Published: almost 15 years ago

10.1038/s41598-017-05252-w

Detecting the presence of fish farm-derived organic matter at the seafloor using stable isotope analysis of phospholipid fatty acids
Cited by: 7
Author(s): Daniel J. Mayor, Nia Gray, Giannina S. I. Hattich, Barry Thornton
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-05662-w

Vertically and horizontally transmitted microbial symbionts shape the gut microbiota ontogenesis of a skin-mucus feeding discus fish progeny
Cited by: 59
Author(s): François‐Étienne Sylvain, Nicolas Derôme
Software Mentions: 2
Published: over 9 years ago

10.1186/s12866-020-01745-3

Effects of aging on the quality of roasted sesame-like flavor Daqu
Cited by: 15
Author(s): Guangsen Fan, Zhaohui Fu, Teng Chen, Pengxiao Liu, Qiuhua Wu, Md Khondakar Raziur Rahman, Xiuting Li
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-017-10436-5

Microbial communities in peatlands along a chronosequence on the Sanjiang Plain, China
Cited by: 16
Author(s): Xue Zhou, Zhenqing Zhang, Lei Tian, Xiujun Li, Chunjie Tian
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-10287-0

Unraveling the gut microbiome of the long-lived naked mole-rat
Cited by: 41
Author(s): Tewodros Debebe, Elena Biagi, Matteo Soverini, Susanne Holtze, Thomas B. Hildebrandt, Claudia Birkemeyer, Dereje Wyohannis, Alemayehu Lemma, Patrizia Brigidi, Vulk Savkovic, Brigitte König, Marco Candela, Gerd Birkenmeier
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-09786-x

Microbial Communities Associated with Primary and Metastatic Head and Neck Squamous Cell Carcinoma – A High Fusobacterial and Low Streptococcal Signature
Cited by: 59
Author(s): Jae Min Shin, Ting Luo, Pachiyappan Kamarajan, J. Christopher Fenno, Alexander H. Rickard, Yvonne L. Kapila
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-11423-6

Assessing the potential for raw meat to influence human colonization with Staphylococcus aureus
Cited by: 14
Author(s): Margaret Carrel, Zhao Chang, Dipendra Thapaliya, Patrick Bitterman, Ashley E. Kates, Blake Hanson, Tara C. Smith
Software Mentions: 2
Published: about 9 years ago

10.1186/s12866-016-0748-x

Bacteria and Archaea diversity within the hot springs of Lake Magadi and Little Magadi in Kenya
Cited by: 78
Author(s): Anne Kelly Kambura, Romano Mwirichia, Remmy Kasili, Edward Nderitu Karanja, Huxley Mae Makonde, Hamadi Iddi Boga
Software Mentions: 2
Published: over 10 years ago

10.1038/s41598-017-11678-z

Impacts of aquaculture wastewater irrigation on soil microbial functional diversity and community structure in arid regions
Cited by: 26
Author(s): Lijuan Chen, Qi Feng, Changsheng Li, Yongping Wei, Yan Zhao, Yongjiu Feng, Hang Zheng, Fengrui Li, Huiya Li
Software Mentions: 2
Published: about 9 years ago

Projects: cran: vegan

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Papers Mentioning vegan 6,903