cran: vegan | Projects | Ecosyste.ms: Papers

10.1016/j.jid.2017.05.029

Cutaneous Nod2 Expression Regulates the Skin Microbiome and Wound Healing in a Murine Model
Cited by: 28
Author(s): Helen Williams, Rachel A. Crompton, Helen A. Thomason, Laura Campbell, Gurdeep Singh, Andrew J. McBain, Sheena M. Cruickshank, Matthew J. Hardman
Software Mentions: 2
Published: almost 9 years ago

10.7554/eLife.55687

Convergent evolution of small molecule pheromones in Pristionchus nematodes
Cited by: 9
Author(s): Chuanfu Dong, Cameron J. Weadick, Vincent Truffault, Ralf J. Sommer
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms20092359

A Natural mtDNA Polymorphism in Complex III Is a Modifier of Healthspan in Mice
Cited by: 12
Author(s): Misa Hirose, Axel Künstner, Paul Schilf, Anna Katharina Tietjen, Olaf Jöhren, Patricia Huebbe, Gerald Rimbach, Jan Rupp, Markus Schwaninger, Hauke Busch, Saleh M. Ibrahim
Software Mentions: 2
Published: over 7 years ago

10.7717/peerj.3479

Alder and the Golden Fleece: high diversity of Frankia and ectomycorrhizal fungi revealed from Alnus glutinosa subsp. barbata roots close to a Tertiary and glacial refugium
Cited by: 12
Author(s): Mélanie Roy, A. Pozzi, Raphaëlle Gareil, Mélissande Nagati, Sophie Manzi, Imen Nouioui, Nino Sharikadze, Patricia Jargeat, Hervé Gryta, Pierre–Arthur Moreau, María P. Fernández, Monique Gardes
Software Mentions: 2
Published: about 9 years ago

10.1186/s13568-020-01135-y

Effect of Broussonetia papyrifera silage on the serum indicators, hindgut parameters and fecal bacterial community of Holstein heifers
Cited by: 15
Author(s): Hanchen Tian, Yiye Chen, Ni Zhu, Yongqing Guo, Ming Deng, Guangbin Liu, Yaokun Li, Dewu Liu, Baoli Sun
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13568-019-0937-8

Specific enrichment of microbes and increased ruminal propionate production: the potential mechanism underlying the high energy efficiency of Holstein heifers fed steam-flaked corn
Cited by: 21
Author(s): Hao Ren, Xiaodong Su, Hanxun Bai, Yaru Yang, Hongrong Wang, Dan Zhang, Jinbin Lu, Shengru Wu, Chuanjiang Cai, Yangchun Cao, Lei Xu, Junhu Yao
Software Mentions: 2
Published: almost 7 years ago

10.1186/s13568-020-01069-5

Microbial composition of sweetness-enhanced yoghurt during fermentation and storage
Cited by: 2
Author(s): Giuseppina Luzzi, Erik Brinks, Jan Fritsche, Charles M. A. P. Franz
Software Mentions: 2
Published: about 6 years ago

10.1186/s13568-017-0336-y

Microbial community compositions in different functional zones of Carrousel oxidation ditch system for domestic wastewater treatment
Cited by: 67
Author(s): Dong Xu, Sitong Liu, Chen Qian, Jinren Ni
Software Mentions: 2
Published: over 9 years ago

10.1002/advs.202001936

Alterations of the Human Gut Microbiome in Chronic Kidney Disease
Cited by: 74
Author(s): Zhigang Ren, Yijun Fan, Ang Li, Quanquan Shen, Jian Wu, Lingyan Ren, Haifeng Lü, Shuzhe Ding, Hongyan Ren, Chao Liu, Wenli Liu, Dan Gao, Zhongwen Wang, Shiyuan Guo, Wei Ge, Zhangsuo Liu, Zujiang Yu, Lanjuan Li
Software Mentions: 2
Published: about 6 years ago

10.18632/aging.102541

Age-related changes in microbial composition and function in cynomolgus macaques
Cited by: 21
Author(s): Jiajia Duan, Bangmin Yin, Wei Li, Tingjia Chai, Weiwei Liang, Yu Huang, Xunmin Tan, Peng Zheng, Jing Wu, Yifan Li, Yan Li, Wei Zhou
Software Mentions: 2
Published: almost 7 years ago

10.1093/ajcn/nqaa388

Remodeling of the gut microbiome during Ramadan-associated intermittent fasting
Cited by: 56
Author(s): Junhong Su, Yueying Wang, Xiaofang Zhang, Mingfu Ma, Zhenrong Xie, Qiuwei Pan, Zhiyong Ma, Maikel P. Peppelenbosch
Software Mentions: 2
Published: over 5 years ago

10.1186/s42523-020-00053-5

Recovery and resiliency of skin microbial communities on the southern leopard frog (Lithobates sphenocephalus) following two biotic disturbances
Cited by: 5
Author(s): Denita Mychele Weeks, Matthew J. Parris, Shawn P. Brown
Software Mentions: 2
Published: about 6 years ago

10.1186/s42523-020-00026-8

Cloacal swabs and alcohol bird specimens are good proxies for compositional analyses of gut microbial communities of Great tits (Parus major)
Cited by: 21
Author(s): Kasun H. Bodawatta, Kateřina Pužejová, Kateřina Sam, Michael Poulsen, Knud A. Jønsson
Software Mentions: 2
Published: over 6 years ago

10.1186/s42523-019-0010-6

The microbiome of the invertebrate model host Galleria mellonella is dominated by Enterococcus
Cited by: 30
Author(s): Camille Nina Allonsius, Wannes Van Beeck, Ilke De Boeck, Stijn Wittouck, Sarah Lebeer
Software Mentions: 2
Published: about 7 years ago

10.1186/s42523-021-00082-8

A diet-specific microbiota drives Salmonella Typhimurium to adapt its in vivo response to plant-derived substrates
Cited by: 5
Author(s): Nicoletta Prax, Stefanie Wagner, Jakob Schardt, Klaus Neuhaus, Thomas Clavel, Thilo M. Fuchs
Software Mentions: 2
Published: over 5 years ago

10.1186/s42523-021-00119-y

Temporal and nutritional effects on the weaner pig ileal microbiota
Cited by: 2
Author(s): Jolinda Pollock, Laura Glendinning, L. A. Smith, Hamna Mohsin, David L. Gally, Michael R. Hutchings, J.G.M. Houdijk
Software Mentions: 2
Published: about 5 years ago

10.3390/ani10050882

Understanding Temporal Social Dynamics in Zoo Animal Management: An Elephant Case Study
Cited by: 3
Author(s): Ellen Williams, Samantha Bremner‐Harrison, Carol Hall, Anne Carter
Software Mentions: 2
Published: over 6 years ago

10.3390/ani10020259

Targeted-Release Organic Acids and Essential Oils Improve Performance and Digestive Function in Broilers under a Necrotic Enteritis Challenge
Cited by: 34
Author(s): Nedra Abdelli, José Francisco Pérez, E. Vilarrasa, Irene Cabeza Luna, Diego Melo-Durán, Matilde D’Angelo, David Solà-Oriol
Software Mentions: 2
Published: over 6 years ago

10.3390/ani11040941

Seasonal Variations in the Gut Fungal Communities of Hooded Crane (Grus monacha) at Wintering and Stopover Sites in China
Cited by: 6
Author(s): Nazia Mahtab, Lizhi Zhou, Fengling Zhang, Wei Wang
Software Mentions: 2
Published: over 5 years ago

10.3390/ani10061014

Human–Wildlife Conflicts in Krakow City, Southern Poland
Cited by: 12
Author(s): Sayantani M. Basak, Izabela A. Wierzbowska, Agnieszka Gajda, Marcin Czarnołęski, Maciej Lesiak, Elżbieta Widera
Software Mentions: 2
Published: over 6 years ago

10.3390/ani10040701

Significant Differences in the Gut Bacterial Communities of Hooded Crane (Grus monacha) in Different Seasons at a Stopover Site on the Flyway
Cited by: 18
Author(s): Fengling Zhang, Xingjia Xiang, Yushu Dong, Shaomin Yan, Yunwei Song, Lizhi Zhou
Software Mentions: 2
Published: over 6 years ago

10.3390/ani10010017

Early Parenteral Administration of Ceftiofur has Gender-Specific Short- and Long-Term Effects on the Fecal Microbiota and Growth in Pigs from the Suckling to Growing Phase
Cited by: 24
Author(s): Ursula Ruczizka, Barbara U. Metzler‐Zebeli, Christine Unterweger, Evelyne Mann, Lukas Schwarz, Christian Knecht, Isabel Hennig-Pauka
Software Mentions: 2
Published: almost 7 years ago

10.3390/ani10050879

Early-Life Intake of an Isotonic Protein Drink Improves the Gut Microbial Profile of Piglets
Cited by: 0
Author(s): Stefan G. Buzoianu, Ava Firth, CallaBria Putrino, Fábio A. Vannucci
Software Mentions: 2
Published: over 6 years ago

10.3390/ani9121005

Effect of Dietary Supplementation of Lactobacillus Casei YYL3 and L. Plantarum YYL5 on Growth, Immune Response and Intestinal Microbiota in Channel Catfish
Cited by: 21
Author(s): Zhang Hong-yu, Haibo Wang, Kun Hu, Liting Jiao, Minghua Zhao, Xianle Yang, L. Xia
Software Mentions: 2
Published: almost 7 years ago

10.3390/ani11082461

Environment-Dependent Variation in Gut Microbiota of an Oviparous Lizard (Calotes versicolor)
Cited by: 6
Author(s): Zhihong Lin, Fang Yang, Ning Li, Buddhi Dayananda
Software Mentions: 2
Published: about 5 years ago

10.3390/ani9121052

Spider Monkeys Rule the Roost: Ateline Sleeping Sites Influence Rainforest Heterogeneity
Cited by: 8
Author(s): Andrew Whitworth, Lawrence Whittaker, Ruthmery Pillco Huarcaya, Eleanor Flatt, Marvin López Morales, Danielle Connor, Marina Garrido Priego, Adrian Forsyth, Christopher Beirne
Software Mentions: 2
Published: almost 7 years ago

10.3390/ani10060935

Ruminal Methanogenic Responses to the Thiamine Supplementation in High-Concentrate Diets
Cited by: 2
Author(s): Fuguang Xue, Yue Wang, Yiguang Zhao, Xuemei Nan, Dengke Hua, Fuyu Sun, Liguo Yang, Linshu Jiang, Benhai Xiong
Software Mentions: 2
Published: over 6 years ago

10.1186/s12866-016-0660-4

Changes of diet and dominant intestinal microbes in farmland frogs
Cited by: 57
Author(s): Chun Wen Chang, Bing Huang, Si Min Lin, C. C. Huang, Pei Chun Liao
Software Mentions: 2
Published: over 10 years ago

10.1186/s12866-019-1689-y

Long-term impact of fecal transplantation in healthy volunteers
Cited by: 44
Author(s): Oleg V. Goloshchapov, Evgenii I. Olekhnovich, С В Сидоренко, Ivan S. Moiseev, Maxim A. Kucher, Dmitry E. Fedorov, Alexander V. Pavlenko, Alexander I. Manolov, Vladimir Gostev, Vladimir A. Veselovsky, Ksenia M. Klimina, Elena S. Kostryukova, Evgeny Bakin, Alexander N. Shvetcov, Э. Д. Гумбатова, Ruslana V. Klementeva, А. А. Щербаков, М. В. Горчакова, Juan José Egozcue, Vera Pawlowsky‐Glahn, Maria A. Suvorova, А. Б. Чухловин, Vadim M. Govorun, Elena N. Ilina, Boris Afanasyev
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12866-020-01895-4

Characterization of the bacterial communities of psyllids associated with Rutaceae in Bhutan by high throughput sequencing
Cited by: 19
Author(s): Jennifer L. Morrow, Namgay Om, G. A. C. Beattie, Grant Chambers, N. J. Donovan, L. W. Liefting, Markus Riegler, Paul Holford
Software Mentions: 2
Published: about 6 years ago

10.1186/s12866-019-1601-9

Diet is not the primary driver of bacterial community structure in the gut of litter-feeding cockroaches
Cited by: 21
Author(s): Niclas Lampert, Aram Mikaelyan, Andreas Brune
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12866-021-02150-0

Culture-dependent and culture-independent characterization of bacterial community diversity in different types of sandy lands: the case of Minqin County, China
Cited by: 14
Author(s): Yali Wei, Fang Wang, Jiyun Gao, Yongji Huang, Wei Ren, Hongmei Sheng
Software Mentions: 2
Published: over 5 years ago

10.1186/s12866-020-01949-7

Biological observations in microbiota analysis are robust to the choice of 16S rRNA gene sequencing processing algorithm: case study on human milk microbiota
Cited by: 14
Author(s): Shirin Moossavi, Faisal Atakora, Kelsey Fehr, Ehsan Khafipour
Software Mentions: 2
Published: about 6 years ago

10.1186/s12866-020-01817-4

Viral metagenomic analysis of fecal samples reveals an enteric virome signature in irritable bowel syndrome
Cited by: 19
Author(s): Mina Ansari, Mehregan Ebrahimi, Mohammad Reza Fattahi, Michael G. Gardner, Ali Reza Safarpour, Mohammad Ali Faghihi, Kamran Bagheri Lankarani
Software Mentions: 2
Published: over 6 years ago

10.1186/s12866-021-02233-y

Optimisation of sample storage and DNA extraction for human gut microbiota studies
Cited by: 23
Author(s): Jekaterina Kazantseva, Esther Malv, Aleksei Kaleda, Aili Kallastu, Anne Meikas
Software Mentions: 2
Published: over 5 years ago

10.1186/s12903-018-0520-8

Apical periodontitis: preliminary assessment of microbiota by 16S rRNA high throughput amplicon target sequencing
Cited by: 25
Author(s): Federico Mussano, Ilario Ferrocino, Natalija Gavrilova, Tullio Genova, Alessandro Dell’Acqua, Luca Simone Cocolin, Stefano Carossa
Software Mentions: 2
Published: over 8 years ago

10.1186/s12903-018-0699-8

Plaque biofilm microbial diversity in infants aged 12 months and their mothers with or without dental caries: a pilot study
Cited by: 7
Author(s): Danying Tao, Fĕi Li, Xiping Feng, Chun Hung Chu, Hai‐Xia Lu
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12887-016-0724-5

A comparison of intestinal microbiota in a population of low-risk infants exposed and not exposed to intrapartum antibiotics: The Baby & Microbiota of the Intestine cohort study protocol
Cited by: 22
Author(s): Julia Simioni, Eileen K. Hutton, Elizabeth Gunn, Alison C. Holloway, Jennifer C. Stearns, Helen McDonald, Andrea Mousseau, Jonathan D. Schertzer, Elyanne M. Ratcliffe, Lehana Thabane, Michael G. Surette, Katherine M. Morrison
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12870-020-02535-9

Plant performance of enhancing licorice with dual inoculating dark septate endophytes and Trichoderma viride mediated via effects on root development
Cited by: 18
Author(s): Chunguang He, Wenquan Wang, Jiaxin Hou
Software Mentions: 2
Published: over 6 years ago

10.1186/s12870-018-1500-5

Structural diversity across arbuscular mycorrhizal, ectomycorrhizal, and endophytic plant–fungus networks
Cited by: 9
Author(s): Hirokazu Toju, Hirotoshi Sato, Satoshi Yamamoto, Akifumi S. Tanabe
Software Mentions: 2
Published: almost 8 years ago

10.1186/1471-2229-10-244

High diversity of root associated fungi in both alpine and arctic Dryas octopetala
Cited by: 106
Author(s): Marit Frederikke Markussen Bjorbækmo, Tor Carlsen, Anne K. Brysting, Trude Vrålstad, Klaus Høiland, Karl I. Ugland, József Geml, Trond Schumacher, Håvard Kauserud
Software Mentions: 2
Published: almost 16 years ago

10.1186/s12870-019-1705-2

Plant trichomes and a single gene GLABRA1 contribute to insect community composition on field-grown Arabidopsis thaliana
Cited by: 24
Author(s): Yasuhiro Sato, Rie Shimizu‐Inatsugi, Misako Yamazaki, Kentaro Shimizu, Atsushi J. Nagano
Software Mentions: 2
Published: over 7 years ago

10.1186/s12870-021-03047-w

Insights into the mechanism of the effects of rhizosphere microorganisms on the quality of authentic Angelica sinensis under different soil microenvironments
Cited by: 10
Author(s): Lei Zhu, Hui Yan, Guisheng Zhou, Chunhao Jiang, Pei Liu, Guang Yu, Sheng Guo, Qinan Wu, Jin‐Ao Duan
Software Mentions: 2
Published: over 5 years ago

10.1186/s13104-021-05657-x

Time-course transcriptome analysis of host cell response to poxvirus infection using a dual long-read sequencing approach
Cited by: 4
Author(s): Zoltán Maróti, Dóra Tombácz, István Prazsák, Norbert Moldován, Zsolt Csabai, Gábor Torma, Zsolt Balázs, Tibor Kalmár, Béla Dénes, M Snyder, Zsolt Boldogkői
Software Mentions: 2
Published: over 5 years ago

10.1186/s12894-020-0576-z

Studying the urine microbiome in superficial bladder cancer: samples obtained by midstream voiding versus cystoscopy
Cited by: 24
Author(s): Suchitra K. Hourigan, Wei Zhu, Wendy S. W. Wong, Nicole C. Clemency, Marina Provenzano, Thierry Vilboux, John E. Niederhuber, John F. Deeken, Simon Chung, Kim McDaniel-Wiley, Donald L. Trump
Software Mentions: 2
Published: over 6 years ago

10.1186/s12917-019-1993-7

Comparison of gut microbiota diversity between wild and captive bharals (Pseudois nayaur)
Cited by: 26
Author(s): Xiaowei Chi, Hongmei Gao, Guosheng Wu, Wen Qin, Pengfei Song, Lei Wang, Jiarui Chen, Zhenyuan Cai, Tongzuo Zhang
Software Mentions: 2
Published: over 7 years ago

10.1093/beheco/arz007

Cleaner personality and client identity have joint consequences on cleaning interaction dynamics
Cited by: 10
Author(s): Katie Dunkley, Christos C. Ioannou, Kathryn E. Whittey, Joanne Cable, Sarah E. Perkins
Software Mentions: 2
Published: over 7 years ago

10.3897/BDJ.5.e20732

The communities of terrestrial macrofungi in different forest types in vicinities of Khanty-Mansiysk (middle taiga zone of West Siberia)
Cited by: 4
Author(s): Nina Filippova, Tatiana Bulyonkova
Software Mentions: 2
Published: almost 9 years ago

10.3897/BDJ.7.e35332

Exploring the taxonomic composition of two fungal communities on the Swedish west coast through metabarcoding
Cited by: 8
Author(s): Alice Retter, R. Henrik Nilsson, Sarah J. Bourlat
Software Mentions: 2
Published: about 7 years ago

10.3897/BDJ.3.e4981

Inventory of the Heteroptera (Insecta: Hemiptera) in Komaba Campus of the University of Tokyo, a highly urbanized area in Japan
Cited by: 5
Author(s): Tadashi Ishikawa, Masaichi Saito, Keiko Kishimoto‐Yamada, Tadahiro Kato, Osamu Kurashima, Motomi Itô
Software Mentions: 2
Published: over 11 years ago

10.3897/BDJ.5.e20577

Understory dominance and the new climax: Impacts of Japanese knotweed (Fallopia japonica) invasion on native plant diversity and recruitment in a riparian woodland
Cited by: 9
Author(s): Matthew Wilson, Anna Freundlich, Christopher T. Martine
Software Mentions: 2
Published: almost 9 years ago

10.1007/s10533-017-0340-y

Vulnerability of macronutrients to the concurrent effects of enhanced temperature and atmospheric pCO2 in representative shelf sea sediment habitats
Cited by: 9
Author(s): Jasmin A. Godbold, Rachel Hale, Christina L. Wood, Martin Solan
Software Mentions: 2
Published: over 9 years ago

10.1093/bioinformatics/btx206

RTK: efficient rarefaction analysis of large datasets
Cited by: 74
Author(s): Paul Saary, Kristoffer Forslund, Peer Bork, Falk Hildebrand
Software Mentions: 2
Published: over 9 years ago

10.1007/s10530-014-0821-z

Harbor networks as introduction gateways: contrasting distribution patterns of native and introduced ascidians
Cited by: 61
Author(s): Susanna López‐Legentil, Miquel L. Legentil, Patrick M. Erwin, Xavier Turon
Software Mentions: 2
Published: almost 12 years ago

10.3390/biology10040316

Hydrological, Environmental and Taxonomical Heterogeneity during the Transition from Drying to Flowing Conditions in a Mediterranean Intermittent River
Cited by: 4
Author(s): Andy Banegas-Medina, Isis-Yelena Montes, Ourania Tzoraki, Luc Brendonck, Tom Pinceel, Gustavo Díaz, Pedro Arriagada, José Luis Arumí, Pablo Pedreros, Ricardo Figueroa
Software Mentions: 2
Published: over 5 years ago

10.3390/biology10020148

Exploring the Gut Microbiome Alteration of the European Hare (Lepus europaeus) after Short-Term Diet Modifications
Cited by: 0
Author(s): Anna Padula, Marina Bambi, Chiara Mengoni, C. Greco, Nadia Mucci, Ilaria Greco, Alberto Masoni, Sara Del Duca, Giovanni Bacci, Giacomo Santini, Renato Fani, Marco Zaccaroni
Software Mentions: 2
Published: over 5 years ago

10.3390/biology9080183

Preliminary Assessment of Microbial Community Structure of Wind-Tidal Flats in the Laguna Madre, Texas, USA
Cited by: 12
Author(s): I‐Shuo Huang, Lee J. Pinnell, John Turner, Hussain Abdulla, Lauren Boyd, Eric W. Linton, Paul V. Zimba
Software Mentions: 2
Published: about 6 years ago

10.1186/2049-2618-1-13

Early microbial and metabolomic signatures predict later onset of necrotizing enterocolitis in preterm infants
Cited by: 277
Author(s): Ardythe L. Morrow, Anne J. Lagomarcino, Kurt Schibler, Diana H. Taft, Zhuoteng Yu, Bo Wang, Mekibib Altaye, Michael Wagner, Dirk Gevers, Doyle V. Ward, Michael A. Kennedy, Curtis Huttenhower, David S. Newburg
Software Mentions: 2
Published: over 13 years ago

10.1186/s40168-020-00802-3

Microecological Koch’s postulates reveal that intestinal microbiota dysbiosis contributes to shrimp white feces syndrome
Cited by: 103
Author(s): Zhijian Huang, Shenzheng Zeng, Jinbo Xiong, Dongwei Hou, Rui Zhou, Chengguang Xing, Dongdong Wei, Xiaogeng Deng, Lingfei Yu, Hao Wang, Zhao‐Peng Deng, Shaoping Weng, Kriengkrai Satapornvanit, Daliang Ning, Jizhong Zhou, Jianguo He
Software Mentions: 2
Published: over 6 years ago

10.1186/s40168-018-0608-z

Impact of early events and lifestyle on the gut microbiota and metabolic phenotypes in young school-age children
Cited by: 121
Author(s): Zhong Huang, John Penders, Zhun Shi, Huahui Ren, Kaiye Cai, Chao Fang, Qiuxia Ding, Carel Thijs, Ellen E. Blaak, Coen D. A. Stehouwer, Xun Xu, Huanming Yang, Jian Wang, Jun Wang, Daisy Jonkers, Ad Masclee, Susanne Brix, Junhua Li, Ilja C. W. Arts, Karsten Kristiansen
Software Mentions: 2
Published: almost 8 years ago

10.1186/s40168-018-0440-5

Predominant gut Lactobacillus murinus strain mediates anti-inflammaging effects in calorie-restricted mice
Cited by: 120
Author(s): Fengwei Pan, Liying Zhang, Min Li, Yingxin Hu, Benhua Zeng, Huijuan Yuan, Liping Zhao, Chenhong Zhang
Software Mentions: 2
Published: over 8 years ago

10.1186/s40168-020-00824-x

A predatory myxobacterium controls cucumber Fusarium wilt by regulating the soil microbial community
Cited by: 73
Author(s): Xianfeng Ye, Zhoukun Li, Xue Luo, Wenhui Wang, Yongkai Li, Rui Li, Bo Zhang, Yan Qiao, Jie Zhou, Jiaqin Fan, Hui Wang, Yan Huang, Hui Cao, Zhongli Cui, Ruifu Zhang
Software Mentions: 2
Published: over 6 years ago

10.1186/s40168-016-0172-3

Comparison of placenta samples with contamination controls does not provide evidence for a distinct placenta microbiota
Cited by: 407
Author(s): Abigail Lauder, Aoife M. Roche, Scott Sherrill-Mix, Aubrey Bailey, Alice Laughlin, Kyle Bittinger, Rita Leite, Michal A. Elovitz, Samuel Parry, Frederic D. Bushman
Software Mentions: 2
Published: over 10 years ago

10.1186/s40168-018-0502-8

Increased richness and diversity of the vaginal microbiota and spontaneous preterm birth
Cited by: 131
Author(s): Aline C. Freitas, Alan D. Bocking, Janet E. Hill, Deborah Money
Software Mentions: 2
Published: over 8 years ago

10.1186/2049-2618-1-8

A gene-targeted approach to investigate the intestinal butyrate-producing bacterialcommunity
Cited by: 116
Author(s): Marius Vital, C. Ryan Penton, Qiong Wang, Vincent B. Young, Dion Antonopoulos, Mitchell L. Sogin, Hilary G. Morrison, Laura H. Raffals, Eugene B. Chang, Gary B. Huffnagle, Thomas M. Schmidt, James R. Cole, James M. Tiedje
Software Mentions: 2
Published: over 13 years ago

10.1186/s40168-018-0508-2

The diversity of uncharacterized antibiotic resistance genes can be predicted from known gene variants—but not always
Cited by: 38
Author(s): Johan Bengtsson‐Palme
Software Mentions: 2
Published: over 8 years ago

10.1186/s40168-020-00848-3

Depth-related variability in viral communities in highly stratified sulfidic mine tailings
Cited by: 36
Author(s): Shao‐Ming Gao, Axel Schippers, Nan Chen, Yang Yuan, Miaomiao Zhang, Qi Li, Bin Liao, Wen‐Sheng Shu, Li-Nan Huang
Software Mentions: 2
Published: over 6 years ago

10.1186/2049-2618-2-14

The microbiome in pediatric cystic fibrosis patients: the role of shared environment suggests a window of intervention
Cited by: 42
Author(s): Thomas H. Hampton, Deanna M. Green, Garry R. Cutting, Hilary G. Morrison, Mitchell L. Sogin, Alex H. Gifford, Bruce A. Stanton, George A. O’Toole
Software Mentions: 2
Published: over 12 years ago

10.1186/s40168-020-00902-0

Bradymonabacteria, a novel bacterial predator group with versatile survival strategies in saline environments
Cited by: 30
Author(s): Da-Shuai Mu, Shuo Wang, Qi-Yun Liang, Zhao-Zhong Du, Renmao Tian, Yang Ouyang, Xinpeng Wang, Aifen Zhou, Ya Gong, Guanjun Chen, Joy D. Van Nostrand, Yunfeng Yang, Jizhong Zhou, Zong‐Jun Du
Software Mentions: 2
Published: about 6 years ago

10.1186/s40168-018-0406-7

Effect of heat shock on hot water plumbing microbiota and Legionella pneumophila control
Cited by: 19
Author(s): Peng Ji, William J. Rhoads, Marc Edwards, Amy Pruden
Software Mentions: 2
Published: over 8 years ago

10.1186/s40168-018-0473-9

Huddling remodels gut microbiota to reduce energy requirements in a small mammal species during cold exposure
Cited by: 74
Author(s): Xueying Zhang, Gansukh Sukhchuluun, Tingbei Bo, Qing-Sheng Chi, Junjie Yang, Bin Chen, Lei Zhang, Dehua Wang
Software Mentions: 2
Published: over 8 years ago

10.1186/s40168-017-0327-x

Perilipin-2 modulates dietary fat-induced microbial global gene expression profiles in the mouse intestine
Cited by: 17
Author(s): Xuejian Xiong, Elise S. Bales, Diana Ir, Charles E. Robertson, James L. McManaman, Daniel N. Frank, John Parkinson
Software Mentions: 2
Published: about 9 years ago

10.1186/s40168-020-00899-6

Antibiotics create a shift from mutualism to competition in human gut communities with a longer-lasting impact on fungi than bacteria
Cited by: 60
Author(s): Bastian Seelbinder, Jiarui Chen, Sascha Brunke, Ruben Vazquez-Uribe, Rakesh Santhaman, Anne-Christin Meyer, Felipe Senne de Oliveira Lino, Ka-Fai Chan, Daniel Loos, Lejla Imamovic, Chi‐Ching Tsang, Rex Pui-kin Lam, Siddharth Sridhar, Kang Kang, Bernhard Hube, Patrick Chiu-Yat Woo, Morten Otto Alexander Sommer, Gianni Panagiotou
Software Mentions: 2
Published: about 6 years ago

10.1186/s40168-017-0388-x

Integrated biogeography of planktonic and sedimentary bacterial communities in the Yangtze River
Cited by: 183
Author(s): Tang Liu, An Ni Zhang, Jiawen Wang, Shufeng Li, Xiaotao Jiang, Chenyuan Dang, Tao Ma, Sitong Liu, Qian Chen, Shuguang Xie, Tong Zhang, Jinren Ni
Software Mentions: 2
Published: over 8 years ago

10.1186/s40168-019-0750-2

Root-associated microbiomes of wheat under the combined effect of plant development and nitrogen fertilization
Cited by: 226
Author(s): Shuaimin Chen, Tatoba R. Waghmode, Run‐Cang Sun, Eiko E. Kuramae, Chunsheng Hu, Binbin Liu
Software Mentions: 2
Published: almost 7 years ago

10.1186/s40168-018-0570-9

The response of dominant and rare taxa for fungal diversity within different root environments to the cultivation of Bt and conventional cotton varieties
Cited by: 22
Author(s): Peng Li, Yong Xue, Jianjun Shi, Aihu Pan, Xueming Tang, Feng Ming
Software Mentions: 2
Published: almost 8 years ago

10.1186/s40168-017-0326-y

Treatment of biofilms in bacterial vaginosis by an amphoteric tenside pessary-clinical study and microbiota analysis
Cited by: 38
Author(s): Cornelia Gottschick, Zhi-Luo Deng, Marius Vital, Clarissa Masur, Christoph Abels, Dietmar H. Pieper, Manfred Rohde, Werner Mendling, Irene Wagner‐Döbler
Software Mentions: 2
Published: about 9 years ago

10.1186/s40168-021-01075-0

Holobiont nitrogen control and its potential for eutrophication resistance in an obligate photosymbiotic jellyfish
Cited by: 11
Author(s): Till Röthig, Giulia Puntin, Jane C. Y. Wong, Alfred Burian, Wendy McLeod, David M. Baker
Software Mentions: 2
Published: over 5 years ago

10.1186/s40168-017-0311-5

Shifts in coastal sediment oxygenation cause pronounced changes in microbial community composition and associated metabolism
Cited by: 48
Author(s): Elias Broman, Johanna Sjöstedt, Jarone Pinhassi, Mark Dopson
Software Mentions: 2
Published: about 9 years ago

10.1186/s40168-020-00974-y

Microdiversity and phylogeographic diversification of bacterioplankton in pelagic freshwater systems revealed through long-read amplicon sequencing
Cited by: 17
Author(s): Yusuke Okazaki, Shohei Fujinaga, Michaela M. Salcher, Cristiana Callieri, Atsushi Tanaka, Ayato Kohzu, Hideo Oyagi, Hideyuki Tamaki, Susumu Nakano
Software Mentions: 2
Published: over 5 years ago

10.1186/s40168-015-0112-7

Passive dust collectors for assessing airborne microbial material
Cited by: 54
Author(s): Rachel I. Adams, Yilin Tian, John W. Taylor, Thomas D. Bruns, Anne Hyvärinen, Martin Täubel
Software Mentions: 2
Published: about 11 years ago

10.1186/s40168-017-0366-3

Normalization of the microbiota in patients after treatment for colonic lesions
Cited by: 53
Author(s): Marc A. Sze, Nielson T. Baxter, Mack T. Ruffin, Mary A.M. Rogers, Patrick D. Schloss
Software Mentions: 2
Published: almost 9 years ago

10.1186/s40168-021-01118-6

Plant developmental stage drives the differentiation in ecological role of the maize microbiome
Cited by: 120
Author(s): Chao Xiong, Brajesh K. Singh, Ji‐Zheng He, Yong Han, Peipei Li, Li-Hua Wan, Guo-Zhong Meng, Si-Yi Liu, Juntao Wang, Chuanfa Wu, An‐Hui Ge, Limei Zhang
Software Mentions: 2
Published: about 5 years ago

10.1186/s40168-021-01032-x

Important ecophysiological roles of non-dominant Actinobacteria in plant residue decomposition, especially in less fertile soils
Cited by: 62
Author(s): Yuanyuan Bao, Jan Dolfing, Zhiying Guo, Ruirui Chen, Meng Wu, Zhongpei Li, Xiangui Lin, Youzhi Feng
Software Mentions: 2
Published: over 5 years ago

10.1186/s40168-018-0497-1

Network hubs in root-associated fungal metacommunities
Cited by: 94
Author(s): Hirokazu Toju, Akifumi S. Tanabe, Hirotoshi Sato
Software Mentions: 2
Published: over 8 years ago

10.1186/s40168-018-0475-7

Amniotic fluid from healthy term pregnancies does not harbor a detectable microbial community
Cited by: 110
Author(s): Efrem S. Lim, Cynthia Rodríguez, Lori R. Holtz
Software Mentions: 2
Published: over 8 years ago

10.1186/2049-2618-2-40

Characterization and quantification of the fungal microbiome in serial samples from individuals with cystic fibrosis
Cited by: 121
Author(s): Sven D. Willger, Sharon L. Grim, Emily L. Dolben, Anna Shipunova, Thomas H. Hampton, Hilary G. Morrison, Laura Filkins, George A. O’Toole, Lisa A. Moulton, Alix Ashare, Mitchell L. Sogin, Deborah A. Hogan
Software Mentions: 2
Published: almost 12 years ago

10.1186/s40168-019-0771-x

Molecular biogeography of planktonic and benthic diatoms in the Yangtze River
Cited by: 38
Author(s): Jiawen Wang, Qingxiang Liu, Xianfu Zhao, Alistair G. L. Borthwick, Yuxin Liu, Qian Chen, Jinren Ni
Software Mentions: 2
Published: almost 7 years ago

10.1186/s40168-018-0525-1

Resilience of the resident soil microbiome to organic and inorganic amendment disturbances and to temporary bacterial invasion
Cited by: 69
Author(s): Késia Silva Lourenço, Afnan Khalil Ahmad Suleiman, Agata Pijl, Johannes A. van Veen, Heitor Cantarella, Eiko E. Kuramae
Software Mentions: 2
Published: about 8 years ago

10.1186/s40168-021-01066-1

Synergistic action of the gut microbiota in environmental RNA interference in a leaf beetle
Cited by: 27
Author(s): Letian Xu, Shijing Xu, Liuwei Sun, Yiqiu Zhang, Jing Luo, Ralph Bock, Jiang Zhang
Software Mentions: 2
Published: over 5 years ago

10.1186/s40168-017-0381-4

The lung tissue microbiota of mild and moderate chronic obstructive pulmonary disease
Cited by: 90
Author(s): Alexa A. Pragman, Tianmeng Lyu, Joshua A. Baller, Trevor Gould, Rosemary F. Kelly, Cavan Reilly, Richard E. Isaacson, Chris H. Wendt
Software Mentions: 2
Published: almost 9 years ago

10.3390/microorganisms8081242

Do Metabolomics and Taxonomic Barcode Markers Tell the Same Story about the Evolution of Saccharomyces sensu stricto Complex in Fermentative Environments?
Cited by: 3
Author(s): Luca Roscini, Angela Conti, Debora Casagrande Pierantoni, Vincent Robert, Laura Della Corte, Gianluigi Cardinali
Software Mentions: 2
Published: about 6 years ago

10.3390/microorganisms7100410

Temporal Dynamics in Rumen Bacterial Community Composition of Finishing Steers during an Adaptation Period of Three Months
Cited by: 22
Author(s): Qinghua Qiu, Chaoyu Gao, Zhibiao Gao, MA Rahman, Yang He, Binghai Cao, Huawei Su
Software Mentions: 2
Published: about 7 years ago

10.3390/microorganisms8121913

Contrasting Environmental Drivers Determine Biodiversity Patterns in Epiphytic Lichen Communities along a European Gradient
Cited by: 9
Author(s): Pilar Hurtado, María Prieto, Francesco de Bello, Gregorio Aragón, Jesús López‐Angulo, Paolo Giordani, Eva Maria Diaz-Pena, Rebeca Vicente, Sonia Merinero, Alica Košuthová, Renato Benesperi, Elisabetta Bianchi, Helmut Mayrhofer, Juri Nascimbene, Martín Grube, Mats Wedin, Martin Westberg, Isabel Martínez
Software Mentions: 2
Published: almost 6 years ago

10.3390/microorganisms7020057

Rotations with Indian Mustard and Wild Rocket Suppressed Cucumber Fusarium Wilt Disease and Changed Rhizosphere Bacterial Communities
Cited by: 20
Author(s): Jun Xue, Jian Wang, Dalong Li, Fengzhi Wu, Xingang Zhou
Software Mentions: 2
Published: over 7 years ago

10.3390/microorganisms9040842

Diversity of Aerobic Anoxygenic Phototrophs and Rhodopsin-Containing Bacteria in the Surface Microlayer, Water Column and Epilithic Biofilms of Lake Baikal
Cited by: 7
Author(s): A. D. Galachyants, Andrey Krasnopeev, G. V. Podlesnaya, Sergey Potapov, E. V. Sukhanova, И. В. Тихонова, E. Zimens, Мarsel R. Kabilov, Н.А. Жученко, Anna Gorshkova, M. Yu. Suslova, О. И. Белых
Software Mentions: 2
Published: over 5 years ago

10.3390/microorganisms8050714

Characteristics and Driving Factors of the Aerobic Denitrifying Microbial Community in Baiyangdian Lake, Xiong’an New Area
Cited by: 14
Author(s): Shilei Zhou, Yifei Sun, Zaixing Li, Tinglin Huang
Software Mentions: 2
Published: over 6 years ago

10.3390/microorganisms7090284

Diversity and Co-Occurrence Patterns of Soil Bacterial and Fungal Communities of Chinese Cordyceps Habitats at Shergyla Mountain, Tibet: Implications for the Occurrence
Cited by: 12
Author(s): Junli Shao, Bei Lai, Wei Jiang, Jiating Wang, Yongfeng Hong, Fubin Chen, Shao-Qing Tan, Lianxian Guo
Software Mentions: 2
Published: about 7 years ago

10.3390/microorganisms8091325

Trichoderma harzianum Inoculation Reduces the Incidence of Clubroot Disease in Chinese Cabbage by Regulating the Rhizosphere Microbial Community
Cited by: 25
Author(s): Junhui Li, Joshua Philp, Jishun Li, Yanli Wei, Hongmei Li, Kai Yang, Maarten H. Ryder, Ruey Toh, Yi Zhou, Matthew D. Denton, Jindong Hu, Wang Yan
Software Mentions: 2
Published: about 6 years ago

10.3390/microorganisms8091387

Both Soil Bacteria and Soil Chemical Property Affected the Micropredator Myxobacterial Community: Evidence from Natural Forest Soil and Greenhouse Rhizosphere Soil
Cited by: 6
Author(s): Zhihui Yang, Xianjiao Zhang, Qing Yao, Honghui Zhu
Software Mentions: 2
Published: about 6 years ago

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