cran: vegan | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0219599

Phages in a thermoreversible sustained-release formulation targeting E. faecalis in vitro and in vivo
Cited by: 30
Author(s): Mor Shlezinger, Michael Friedman, Yael Houri‐Haddad, Ronen Hazan
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2020.585428

Conversion of Rutin, a Prevalent Dietary Flavonol, by the Human Gut Microbiota
Cited by: 37
Author(s): Alessandra Riva, Ditta Kolimár, Andreas Spittler, Lukas Wisgrill, Craig W. Herbold, László Abrankó, David Berry
Software Mentions: 2
Published: almost 4 years ago

10.3389/fmicb.2021.518865

Metagenomic Analysis Reveals Microbial Community Structure and Metabolic Potential for Nitrogen Acquisition in the Oligotrophic Surface Water of the Indian Ocean
Cited by: 16
Author(s): Yayu Wang, Shuilin Liao, Yingbao Gai, Guilin Liu, Tao Jin, Huan Liu, Lone Gram, Mikael Lenz Strube, Guangyi Fan, Sunil Kumar Sahu, Shanshan Liu, Shuheng Gan, Zhang-Xian Xie, Ling-Fen Kong, Pengfan Zhang, Xin Liu, Dazhi Wang
Software Mentions: 2
Published: almost 4 years ago

10.3389/fmicb.2019.01618

Cover Crop Management Practices Rather Than Composition of Cover Crop Mixtures Affect Bacterial Communities in No-Till Agroecosystems
Cited by: 58
Author(s): Sana Romdhane, Aymé Spor, Hugues Busset, Laurent Falchetto, Juliette Martin, Florian Bizouard, David Bru, Marie-Christine Breuil, Laurent Philippot, Stéphane Cordeau
Software Mentions: 2
Published: over 5 years ago

10.1016/j.dib.2019.103968

Data on macrobenthic prey from an essential western gray whale feeding habitat, Sakhalin Island, Russia, 2001–2015
Cited by: 0
Author(s): Arny L. Blanchard, Natalia L. Demchenko, Lise A.M. Aerts, Sergei B. Yazvenko, В. В. Ивин, Ilya Shcherbakov, H. R. Melton
Software Mentions: 2
Published: over 5 years ago

10.1016/j.dib.2019.104213

Data on taxonomic annotation and diversity of 18S rRNA gene amplicon libraries derived from high throughput sequencing
Cited by: 1
Author(s): Takafumi Kataoka, Ryou Kondo
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2020.01781

Geochemistry and Microbiology Predict Environmental Niches With Conditions Favoring Potential Microbial Activity in the Bakken Shale
Cited by: 11
Author(s): Kara Tinker, James Gardiner, Daniel Lipus, Preom Sarkar, Mengling Stuckman, Djuna Gulliver
Software Mentions: 2
Published: over 4 years ago

10.1016/j.dib.2020.105503

Data on pteridophyte species diversity and status of the International Union for Conservation of Nature in each political unit of Myanmar
Cited by: 3
Author(s): Phyo Kay Khine, Harald Schneider
Software Mentions: 2
Published: over 4 years ago

10.1016/j.dib.2020.105260

Metavirome datasets from two endemic Baikal sponges Baikalospongia bacillifera
Cited by: 9
Author(s): Tatyana V. Butina, И. В. Ханаев, Л. С. Кравцова, O. O. Maikova, Yu. S. Bukin
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2019.01335

Enrichments/Derichments of Root-Associated Bacteria Related to Plant Growth and Nutrition Caused by the Growth of an EPSPS-Transgenic Maize Line in the Field
Cited by: 18
Author(s): Zhongling Wen, Minkai Yang, Mei-Hang Du, Zhao-Zhao Zhong, Yun-Ting Lu, Gu-Hao Wang, Xiao-Mei Hua, Aliya Fazal, Chunhua Mu, Shufeng Yan, Yan Zhen, Rongwu Yang, Jinliang Qi, Zhi Hong, Guihua Lü, Yonghua Yang
Software Mentions: 2
Published: over 5 years ago

10.1016/j.dib.2018.02.017

Early-Middle Pleistocene benthic turnover and oxygen isotope stratigraphy from the Central Mediterranean (Valle di Manche, Crotone Basin, Italy): Data and trends
Cited by: 8
Author(s): Michele Azzarone, Patrizia Ferretti, Verónica Rossi, Daniele Scarponi, Luca Capraro, Patrizia Macrı́, John Warren Huntley, Costanza Faranda
Software Mentions: 2
Published: over 6 years ago

10.1007/s00284-018-1503-3

Environmental Drivers Controlling Bacterial and Archaeal Abundance in the Sediments of a Mediterranean Lagoon Ecosystem
Cited by: 15
Author(s): Claudia Pala, Massimiliano Molari, Daniele Nizzoli, Marco Bartoli, Pierluigi Viaroli, Elena Manini
Software Mentions: 2
Published: over 6 years ago

10.14814/phy2.13649

Fecal Enterobacteriales enrichment is associated with increased in vivo intestinal permeability in humans
Cited by: 24
Author(s): Christian Fischer Pedersen, Umer Zeeshan Ijaz, Edith Gallagher, Felicity Horton, Richard J. Ellis, Etana Joy Jaiyeola, Thibaut Duparc, David Russell‐Jones, Paul Hinton, Patrice D. Cani, Roberto M. La Ragione, M. Denise Robertson
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2019.00538

The Eukaryotic Life on Microplastics in Brackish Ecosystems
Cited by: 95
Author(s): Marie Therese Kettner, Sonja Oberbeckmann, Matthias Labrenz, Hans‐Peter Grossart
Software Mentions: 2
Published: over 5 years ago

10.1093/conphys/cox017

Capture severity, infectious disease processes and sex influence post-release mortality of sockeye salmon bycatch
Cited by: 46
Author(s): Amy K. Teffer, Scott G. Hinch, Kristi Miller, David A. Patterson, Anthony P. Farrell, Steven J. Cooke, Arthur L. Bass, Petra Szekeres, Francis Juanes
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2017.01339

Global Biogeographic Analysis of Methanogenic Archaea Identifies Community-Shaping Environmental Factors of Natural Environments
Cited by: 60
Author(s): Wen Xi, Shuai Yang, Fabian Horn, Matthias Winkel, Dirk Wagner, Susanne Liebner
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2017.00666

A Metagenomics Investigation of Carbohydrate-Active Enzymes along the Gastrointestinal Tract of Saudi Sheep
Cited by: 33
Author(s): Saad B. Almasaudi, Abdessamad El Kaoutari, Élodie Drula, Hussein A. Almehdar, Elrashdy M. Redwan, Vincent Lombard, Bernard Henrissat
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2013.00167

Tropical freshwater ecosystems have lower bacterial growth efficiency than temperate ones
Cited by: 51
Author(s): André Megali Amado, Frederico Meirelles-Pereira, Luciana de Oliveira Vidal, Hugo Sarmento, Albert Luiz Suhett, Vinicius F. Farjalla, James B. Cotner, Fábio Roland
Software Mentions: 2
Published: almost 12 years ago

10.1038/s42003-020-1054-6

Biocrusts buffer against the accumulation of soil metallic nutrients induced by warming and rainfall reduction
Cited by: 10
Author(s): Eduardo Moreno-Jiménez, Raúl Ochoa‐Hueso, César Plaza, Sara Aceña-Heras, Maren Flagmeier, Fatima Z. Elouali, Victoria Ochoa, Beatriz Gozalo, Roberto Lázaro, Fernando T. Maestre
Software Mentions: 2
Published: over 4 years ago

10.1038/s42003-020-1106-y

Rapid detection of microbiota cell type diversity using machine-learned classification of flow cytometry data
Cited by: 21
Author(s): Birge D. Özel Duygan, Noushin Hadadi, Ambrin Farizah Babu, Markus Seyfried, van der Peter Meer
Software Mentions: 2
Published: over 4 years ago

10.1098/rstb.2015.0328

Dissecting host-associated communities with DNA barcodes
Cited by: 23
Author(s): Christopher C. M. Baker, Leonora S. Bittleston, Jon G. Sanders, Naomi E. Pierce
Software Mentions: 2
Published: about 8 years ago

10.3389/fmicb.2017.01408

Modified Lipid Extraction Methods for Deep Subsurface Shale
Cited by: 9
Author(s): Rawlings N. Akondi, Ryan V. Trexler, Susan M. Pfiffner, Paula J. Mouser, Shikha Sharma
Software Mentions: 2
Published: over 7 years ago

10.1038/s42003-020-0859-7

The gut microbiome but not the resistome is associated with urogenital schistosomiasis in preschool-aged children
Cited by: 17
Author(s): Derick Nii Mensah Osakunor, Patrick Munk, Takafira Mduluza, Thomas Nordahl Petersen, Christian Brinch, Alasdair Ivens, Theresa Chimponda, Seth Amanfo, Joanne F. Murray, Mark Woolhouse, Frank Møller Aarestrup, Francisca Mutapi
Software Mentions: 2
Published: over 4 years ago

10.1038/s42003-018-0201-9

Mycorrhizal fungi mediate the direction and strength of plant–soil feedbacks differently between arbuscular mycorrhizal and ectomycorrhizal communities
Cited by: 54
Author(s): Kohmei Kadowaki, Satoshi Yamamoto, Hirotoshi Sato, Akifumi S. Tanabe, Amane Hidaka, Hirokazu Toju
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2015.01408

Intestinal Microbiota Signatures Associated with Inflammation History in Mice Experiencing Recurring Colitis
Cited by: 92
Author(s): David Berry, Orest Kuzyk, Isabella Rauch, Susanne Heider, Clarissa Schwab, Eva Hainzl, Thomas Decker, Mathias Müller, Birgit Strobl, Christa Schleper, Tim Urich, Michael Wagner, Lukas Kenner, Alexander Loy
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2015.01287

Solute Concentrations Influence Microbial Methanogenesis in Coal-bearing Strata of the Cherokee Basin, USA
Cited by: 36
Author(s): Matthew F. Kirk, Brien H. Wilson, Kyle A. Marquart, Lydia H. Zeglin, David S. Vinson, Theodore M. Flynn
Software Mentions: 2
Published: about 9 years ago

10.1098/rstb.2016.0116

Interacting effects of land use and climate on rodent-borne pathogens in central Kenya
Cited by: 35
Author(s): Hillary S. Young, Douglas J. McCauley, Rodolfo Dirzo, Charles L. Nunn, Michael G. Campana, Bernard Agwanda, Erik Otárola‐Castillo, Eric R. Castillo, Robert M. Pringle, Kari E. Veblen, Daniel J. Salkeld, Kristin Stewardson, Robert C. Fleischer, Éric F. Lambin, Todd M. Palmer, Kristofer M. Helgen
Software Mentions: 2
Published: over 7 years ago

10.1038/s42003-020-0838-z

Growth and rapid succession of methanotrophs effectively limit methane release during lake overturn
Cited by: 36
Author(s): Magdalena Mayr, M. Zimmermann, Jason Dey, Andreas Brand, Bernhard Wehrli, Helmut Bürgmann
Software Mentions: 2
Published: over 4 years ago

10.3390/microorganisms9020358

An Oral FMT Capsule as Efficient as an Enema for Microbiota Reconstruction Following Disruption by Antibiotics, as Assessed in an In Vitro Human Gut Model
Cited by: 11
Author(s): Cécile Verdier, Sylvain Denis, Cyrielle Gasc, Lilia Boucinha, Ophélie Uriot, Dominique Delmas, Joël Doré, Corentin Le Camus, Carole Schwintner, Stéphanie Blanquet‐Diot
Software Mentions: 2
Published: almost 4 years ago

10.3389/fmicb.2018.00022

Biogeographic Differences in the Microbiome and Pathobiome of the Coral Cladocora caespitosa in the Western Mediterranean Sea
Cited by: 29
Author(s): Esther Rubio-Portillo, Diego K. Kersting, Cristina Linares, Alfonso A. Ramos‐Esplá, Josefa Antón
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0148967

Circumpolar Genetic Structure and Recent Gene Flow of Polar Bears: A Reanalysis
Cited by: 51
Author(s): René M. Malenfant, Corey S. Davis, Catherine I. Cullingham, David W. Coltman
Software Mentions: 2
Published: over 8 years ago

10.1098/rstb.2018.0092

Natural diversity of CRISPR spacers of Thermus : evidence of local spacer acquisition and global spacer exchange
Cited by: 19
Author(s): Anna Lopatina, Sofia Medvedeva, Daria Artamonova, Matvey Kolesnik, Vasily Sitnik, Iaroslav Ispolatov, Konstantin Severinov
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0061516

Investigation of the Effect of Type 2 Diabetes Mellitus on Subgingival Plaque Microbiota by High-Throughput 16S rDNA Pyrosequencing
Cited by: 92
Author(s): Mi Zhou, Ruichen Rong, Daniel Munro, Chunxia Zhu, Xiang Gao, Qi Zhang, Qunfeng Dong
Software Mentions: 2
Published: over 11 years ago

10.3389/fmicb.2016.00215

Changes in the Relative Abundance of Two Saccharomyces Species from Oak Forests to Wine Fermentations
Cited by: 17
Author(s): Sofia Dashko, Ping Liu, Helena Volk, Lorena Butinar, Jure Piškur, Justin C. Fay
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2017.02709

Environmental Factors Support the Formation of Specific Bacterial Assemblages on Microplastics
Cited by: 304
Author(s): Sonja Oberbeckmann, Bernd Kreikemeyer, Matthias Labrenz
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2020.01915

Keystone Microbiomes Revealed by 14 Years of Field Restoration of the Degraded Agricultural Soil Under Distinct Vegetation Scenarios
Cited by: 16
Author(s): Zhiming Zhang, Xinhui Han, Jun Yan, Wenxiu Zou, En Tao Wang, Xinchun Lu, Chunxiang Xu
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0176865

Nectar sugars and amino acids in day- and night-flowering Nicotiana species are more strongly shaped by pollinators’ preferences than organic acids and inorganic ions
Cited by: 37
Author(s): Kira Tiedge, Gertrud Lohaus
Software Mentions: 2
Published: over 7 years ago

10.1098/rstb.2019.0576

Estimating molecular preservation of the intestinal microbiome via metagenomic analyses of latrine sediments from two medieval cities
Cited by: 6
Author(s): Susanna Sabin, Harry Yeh, Aleks Pluskowski, Christa Clamer, Piers D. Mitchell, Kirsten I. Bos
Software Mentions: 2
Published: about 4 years ago

10.3389/fpls.2020.00088

Effects of Pest Management Practices on Soil Nematode Abundance, Diversity, Metabolic Footprint and Community Composition Under Paddy Rice Fields
Cited by: 2
Author(s): Bing Yang, Qunying Chen, Xianghui Liu, Fajun Chen, Yunfeng Liang, Qiang Wei, Lulu He, Feng Ge
Software Mentions: 2
Published: almost 5 years ago

10.3389/fpls.2021.656158

Deciphering Genotype-By-Environment Interaction for Target Environmental Delineation and Identification of Stable Resistant Sources Against Foliar Blast Disease of Pearl Millet
Cited by: 9
Author(s): Surya Sankar, Sher Singh, Ganesan Prakash, C. Tara Satyavathi, S. L. Soumya, Y.P. Yadav, L.D. Sharma, Atmakuri Ramakrishna Rao, Nirupma Singh, Rakesh K. Srivastava
Software Mentions: 2
Published: over 3 years ago

10.1128/mSystems.00741-19

Long-Term Phytoremediation of Coastal Saline Soil Reveals Plant Species-Specific Patterns of Microbial Community Recruitment
Cited by: 45
Author(s): Xiaogai Wang, Run‐Cang Sun, Yinping Tian, Kai Guo, Hang Sun, Xiaojing Liu, Haiyan Chu, Binbin Liu
Software Mentions: 2
Published: over 4 years ago

10.3389/fpls.2017.00874

Stand Structure and Substrate Diversity as Two Major Drivers for Bryophyte Distribution in a Temperate Montane Ecosystem
Cited by: 14
Author(s): Yun Chen, Shuai Niu, Peikun Li, Hongru Jia, Hailiang Wang, Ye Yongzhong, Zuoqiang Yuan
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0173901

The preservation of microbial DNA in archived soils of various genetic types
Cited by: 14
Author(s): Е. А. Иванова, Ilia Korvigo, Б. Ф. Апарин, Е. Л. Чирак, Е. В. Першина, Nikolay S. Romaschenko, Н. А. Проворов, E. E. Andronov
Software Mentions: 2
Published: over 7 years ago

10.3389/fpls.2021.618524

Distribution of Woody Plant Species Among Different Disturbance Regimes of Forests in a Temperate Deciduous Broad-Leaved Forest
Cited by: 8
Author(s): Jingjing Xi, Yi-Zhen Shao, Zihao Li, Pengfei Zhao, Ye Yongzhong, Wang Li, Yun Chen, Zuoqiang Yuan
Software Mentions: 2
Published: over 3 years ago

10.3389/fpls.2021.710139

Silicon Application Modulates the Growth, Rhizosphere Soil Characteristics, and Bacterial Community Structure in Sugarcane
Cited by: 8
Author(s): Quanqing Deng, Tao Yu, Zhen Zeng, Umair Ashraf, Qihan Shi, Sixiu Huang, Tengxiang Lian, Jianwen Chen, Wardah Muzaffar, Wei Shen
Software Mentions: 2
Published: over 3 years ago

10.3389/fpls.2019.01466

Whole Plastome Sequencing Within Silene Section Psammophilae Reveals Mainland Hybridization and Divergence With the Balearic Island Populations
Cited by: 8
Author(s): José Carlos del Valle, Inés Casimiro-Soriguer, Ma Luisa Buide, Eduardo Narbona, Justen B. Whittall
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2020.01154

Deciphering the Biotic and Climatic Factors That Influence Floral Scents: A Systematic Review of Floral Volatile Emissions
Cited by: 42
Author(s): Gerard Farré‐Armengol, Marcos Fernández‐Martínez, Iolanda Filella, Robert R. Junker, Josep Peñuelas
Software Mentions: 2
Published: over 4 years ago

10.3389/fpls.2017.00767

Lack of Impacts during Early Establishment Highlights a Short-Term Management Window for Minimizing Invasions from Perennial Biomass Crops
Cited by: 2
Author(s): Natalie M. West, David P. Matlaga, Ranjan Muthukrishnan, Greg Spyreas, Nicholas R. Jordan, James D. Forester, Adam S. Davis
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0194404

A comparative study of prokaryotic diversity and physicochemical characteristics of Devils Hole and the Ash Meadows Fish Conservation Facility, a constructed analog
Cited by: 5
Author(s): Joshua D. Sackett, Desiree C. Huerta, Brittany R. Kruger, Scott D. Hamilton-Brehm, Duane P. Moser
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0242643

Soil microbial community responses to short-term nitrogen addition in China’s Horqin Sandy Land
Cited by: 4
Author(s): Yayi Niu, Yucong Duan, Yuqiang Li, Xuyang Wang, Yun Chen, Lilong Wang
Software Mentions: 2
Published: over 3 years ago

10.3389/fpls.2019.01193

Microalgae and Phototrophic Purple Bacteria for Nutrient Recovery From Agri-Industrial Effluents: Influences on Plant Growth, Rhizosphere Bacteria, and Putative Carbon- and Nitrogen-Cycling Genes
Cited by: 25
Author(s): Somayeh Zarezadeh, Navid R. Moheimani, Sue Jenkins, Tim Hülsen, Hossein Riahi, Bede S. Mickan
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2018.00967

A Genomic Map of Climate Adaptation in Arabidopsis thaliana at a Micro-Geographic Scale
Cited by: 52
Author(s): Léa Frachon, Claudia Bartoli, Sébastien Carrère, Olivier Bouchez, Adeline Chaubet, Mathieu Gautier, Dominique Roby, Fabrice Roux
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0176066

The role of climate and environmental variables in structuring bird assemblages in the Seasonally Dry Tropical Forests (SDTFs)
Cited by: 7
Author(s): Gabriela Silva Ribeiro Gonçalves, Pablo Vieira Cerqueira, Leandro Schlemmer Brasil, Marcos Pérsio Dantas Santos
Software Mentions: 2
Published: over 7 years ago

10.3389/fpls.2021.683422

Genome-Wide SNPs Provide Insights on the Cryptic Genetic Structure and Signatures of Climate Adaption in Amorphophallus albus Germplasms
Cited by: 1
Author(s): Yong Gao, Sheng Yin, Honglong Chu, Yanan Zhang, Haibo Wang, Huanhuan Chen, Chao Liu, Dong-Qin Dai, Lizhou Tang
Software Mentions: 2
Published: over 3 years ago

10.1038/s41396-020-0646-y

Host-microbiota interaction helps to explain the bottom-up effects of climate change on a small rodent species
Cited by: 26
Author(s): Guoliang Li, Baofa Yin, Jing Li, Jun Wang, Wanhong Wei, Daniel I. Bolnick, Xiaofeng Wan, Baoli Zhu, Zhibin Zhang
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0115493

Vertical and Horizontal Genetic Connectivity in Chromis verater, an Endemic Damselfish Found on Shallow and Mesophotic Reefs in the Hawaiian Archipelago and Adjacent Johnston Atoll
Cited by: 49
Author(s): Kimberly Tenggardjaja, Brian W. Bowen, Giacomo Bernardi
Software Mentions: 2
Published: almost 10 years ago

10.3389/fpls.2021.616645

Microplastic Shape, Polymer Type, and Concentration Affect Soil Properties and Plant Biomass
Cited by: 186
Author(s): Yudi M. Lozano, Timon Lehnert, Lydia T. Linck, Anika Lehmann, Matthias C. Rillig
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0113026

Maternal Obesity Is Associated with Alterations in the Gut Microbiome in Toddlers
Cited by: 141
Author(s): Jeffrey D. Galley, Michael T. Bailey, Claire M. Kamp Dush, Sarah J. Schoppe‐Sullivan, Lisa M. Christian
Software Mentions: 2
Published: about 10 years ago

10.7717/peerj.10339

Characterization of sediment microbial communities at two sites with low hydrocarbon pollution in the southeast Gulf of Mexico
Cited by: 5
Author(s): Pablo de Jesús Suárez-Moo, Araceli Lamelas, Itzá García-Bautista, Luis Felipe Barahona-Pérez, Gloria Sandoval-Flores, David Valdés-Lozano, Tanit Toledano-Thompson, Erik Polanco-Lugo, Ruby Valdez-Ojeda
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0171866

The abundance and diversity of arbuscular mycorrhizal fungi are linked to the soil chemistry of screes and to slope in the Alpic paleo-endemic Berardia subacaulis
Cited by: 37
Author(s): Gabriele Casazza, Erica Lumini, Enrico Ercole, Francesco Dovana, Maria Guerrina, Annamaria Arnulfo, Luigi Minuto, Anna Fusconi, Marco Mucciarelli
Software Mentions: 2
Published: almost 8 years ago

10.3389/fpls.2019.00658

Ash Dieback and Its Impact in Near-Natural Forest Remnants – A Plant Community-Based Inventory
Cited by: 17
Author(s): Alexandra Erfmeier, Kerstin Haldan, Lili M. Beckmann, Magdalene Behrens, Jonas Rotert, Joachim Schrautzer
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0200285

Dysbiosis in the oral bacterial and fungal microbiome of HIV-infected subjects is associated with clinical and immunologic variables of HIV infection
Cited by: 37
Author(s): Pranab K. Mukherjee, Jyotsna Chandra, Mauricio Retuerto, Curtis Tatsuoka, Mahmoud A. Ghannoum, Grace A. McComsey
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.4508

Half-lives of PAHs and temporal microbiota changes in commonly used urban landscaping materials
Cited by: 50
Author(s): Marja I. Roslund, Mira Grönroos, Anna‐Lea Rantalainen, Ari Jumpponen, Martin Romantschuk, Nan Hui, Heikki Hyöty, Olli H. Laitinen, Aki Sinkkonen
Software Mentions: 2
Published: over 6 years ago

10.1128/mSystems.00055-20

Mucosal Microbiota and Metabolome along the Intestinal Tract Reveal a Location-Specific Relationship
Cited by: 23
Author(s): Ce Yuan, Melanie L. Graham, Christopher Staley, Subbaya Subramanian
Software Mentions: 2
Published: over 4 years ago

10.3389/fpls.2018.01601

Response of Wheat to a Multiple Species Microbial Inoculant Compared to Fertilizer Application
Cited by: 28
Author(s): Salmabi Kayakkeel Assainar, Lynette K. Abbott, Bede S. Mickan, Andrew S. Whiteley, Kadambot H. M. Siddique, Zakaria M. Solaiman
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0187636

Wanted dead or alive? Using metabarcoding of environmental DNA and RNA to distinguish living assemblages for biosecurity applications
Cited by: 125
Author(s): Xavier Pochon, Anastasija Zaiko, Lauren Fletcher, Olivier Laroche, Susanna A. Wood
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0028088

Comparing the Bacterial Diversity of Acute and Chronic Dental Root Canal Infections
Cited by: 116
Author(s): Adriana Lopes dos Santos, José F. Siqueira, Isabela N. Rôças, Ederson C Jesus, Alexandre Soares Rosado, James M. Tiedje
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0162551

Management of Protected Areas and Its Effect on an Ecosystem Function: Removal of Prosopis flexuosa Seeds by Mammals in Argentinian Drylands
Cited by: 16
Author(s): Claudia M. Campos, Valeria E. Campos, M. Florencia Miguel, Mónica I. Cona
Software Mentions: 2
Published: about 8 years ago

10.3389/fpls.2020.00963

Bacterial Blight Induced Shifts in Endophytic Microbiome of Rice Leaves and the Enrichment of Specific Bacterial Strains With Pathogen Antagonism
Cited by: 30
Author(s): Fenghuan Yang, Jie Zhang, Huaying Zhang, Guanghai Ji, Liexian Zeng, Yan Li, Chao Yu, W. G. Dilantha Fernando, Wen Chen
Software Mentions: 2
Published: over 4 years ago

10.3389/fpls.2018.01666

Free-Living Nematodes Together With Associated Microbes Play an Essential Role in Apple Replant Disease
Cited by: 32
Author(s): Xorla Kanfra, Benye Liu, Søren J. Sørensen, Holger Heuer
Software Mentions: 2
Published: about 6 years ago

10.3389/fpls.2018.00345

Long-Term Irrigation Affects the Dynamics and Activity of the Wheat Rhizosphere Microbiome
Cited by: 62
Author(s): Dmitri V. Mavrodi, Olga V. Mavrodi, Liam D. H. Elbourne, Sasha G. Tetu, Robert F. Bonsall, James A. Parejko, Mingming Yang, Ian T. Paulsen, David M. Weller, Linda S. Thomashow
Software Mentions: 2
Published: over 6 years ago

10.3389/fpls.2018.00624

Application of Sodium Silicate Enhances Cucumber Resistance to Fusarium Wilt and Alters Soil Microbial Communities
Cited by: 27
Author(s): Xingang Zhou, Yanhui Shen, Xuepeng Fu, Fengzhi Wu
Software Mentions: 2
Published: over 6 years ago

10.1128/mSystems.00119-20

Continental-Scale Microbiome Study Reveals Different Environmental Characteristics Determining Microbial Richness, Composition, and Quantity in Hotel Rooms
Cited by: 16
Author(s): Fu Xi, Yanling Li, Qianqian Yuan, Gui-Hong Cai, Yiqun Deng, Xin Zhang, Dan Norbäck, Yu Sun
Software Mentions: 2
Published: over 4 years ago

10.3389/fpls.2020.584081

Does the Rarity of a Flower’s Scent Phenotype in a Deceptive Orchid Explain Its Pollination Success?
Cited by: 5
Author(s): Herbert Braunschmid, Stefan Dötterl
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0206214

Microbiota stability in healthy individuals after single-dose lactulose challenge—A randomized controlled study
Cited by: 16
Author(s): Sandra Y. Wotzka, Markus Kreuzer, Lisa Maier, Mirjam Zünd, Markus C. Schlumberger, Bidong D. Nguyen, Mark Fox, Daniel Pohl, Henriette Heinrich, Gerhard Rogler, Luc Biedermann, Michael Scharl, Shinichi Sunagawa, Wolf‐Dietrich Hardt, Benjamin Misselwitz
Software Mentions: 2
Published: about 6 years ago

10.7717/peerj.6592

Circadian disruption and divergent microbiota acquisition under extended photoperiod regimens in chicken
Cited by: 25
Author(s): Anne-Sophie Charlotte Hieke, Shawna M. Hubert, Giridhar Athrey
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2015.00490

Characterization of culturable bacterial endophytes and their capacity to promote plant growth from plants grown using organic or conventional practices
Cited by: 101
Author(s): Ye Xia, Seth DeBolt, Jean-Luc Dreyer, Delia Scott, Mark A. Williams
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0092958

Dynamics of Soil Bacterial Communities in Response to Repeated Application of Manure Containing Sulfadiazine
Cited by: 105
Author(s): Guo-Chun Ding, Viviane Radl, Brigitte Schloter-Hai, Sven Jechalke, Holger Heuer, Kornelia Smalla, Michael Schloter
Software Mentions: 2
Published: over 10 years ago

10.3389/fpls.2019.00205

What Do Nectarivorous Bats Like? Nectar Composition in Bromeliaceae With Special Emphasis on Bat-Pollinated Species
Cited by: 17
Author(s): Thomas Göttlinger, Michael Schwerdtfeger, Kira Tiedge, Gertrud Lohaus
Software Mentions: 2
Published: almost 6 years ago

10.3389/fpls.2021.719092

Floral Scents of a Deceptive Plant Are Hyperdiverse and Under Population-Specific Phenotypic Selection
Cited by: 12
Author(s): Eva Gfrerer, Danae Laina, Marc Gibernau, Roman Fuchs, Martin Happ, Till Tolasch, Wolfgang Trutschnig, Anja C. Hörger, Hans Peter Comes, Stefan Dötterl
Software Mentions: 2
Published: about 3 years ago

10.3390/microorganisms9010120

Comparative Analysis of the Ecological Succession of Microbial Communities on Two Artificial Reef Materials
Cited by: 16
Author(s): Zhansheng Guo, Lu Wang, Cong Wang, Zhaoyang Jiang, Zhenlin Liang
Software Mentions: 2
Published: almost 4 years ago

10.3389/fpls.2020.00986

Population Genetic Structure and Demographic History of Primula fasciculata in Southwest China
Cited by: 9
Author(s): Guangpeng Ren, Rubén G. Mateo, Elena Conti, Nicolas Salamin
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0008422

The Effects of Circumcision on the Penis Microbiome
Cited by: 204
Author(s): Lance B. Price, Cindy M. Liu, Kristine E. Johnson, Maliha Aziz, Matthew K. Lau, Jolene R. Bowers, Jacques Ravel, Paul Keim, David Serwadda, Maria J. Wawer, Ronald H. Gray
Software Mentions: 2
Published: almost 15 years ago

10.1371/journal.pone.0217592

Understanding climate change from a global analysis of city analogues
Cited by: 67
Author(s): Jean François Bastin, Emily Clark, T. R. Elliott, Simon P. Hart, Johan van den Hoogen, Iris Hordijk, Haozhi Ma, Sabiha Majumder, Gabriele Manoli, Julia Maschler, Lidong Mo, Devin Routh, Kailiang Yu, Constantin M. Zohner, Thomas W. Crowther
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0103581

Daily Rhythm of Mutualistic Pollinator Activity and Scent Emission in Ficus septica: Ecological Differentiation between Co-Occurring Pollinators and Potential Consequences for Chemical Communication and Facilitation of Host Speciation
Cited by: 18
Author(s): Lucie Conchou, Léa Cabioch, Lillian Jennifer Rodriguez, Finn Kjellberg
Software Mentions: 2
Published: over 10 years ago

10.7717/peerj.10716

Gut bacterial communities in the freshwater snail Planorbella trivolvis and their modification by a non-herbivorous diet
Cited by: 11
Author(s): Zongfu Hu, Qing Tong, Jie Chang, Jianhua Yu, Shuguo Li, Huaxin Niu, Dongmei Ma
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0022905

Predator Diversity and Abundance Provide Little Support for the Enemies Hypothesis in Forests of High Tree Diversity
Cited by: 76
Author(s): Andreas Schuldt, Sabine Both, Helge Bruelheide, Werner Härdtle, Bernhard Schmid, Hong‐Zhang Zhou, Thorsten Aßmann
Software Mentions: 2
Published: over 13 years ago

10.1038/s41396-021-00985-z

Ecologically coherent population structure of uncultivated bacterioplankton
Cited by: 20
Author(s): Conny Sjöqvist, Luis Fernando Delgado, Johannes Alneberg, Anders F. Andersson
Software Mentions: 2
Published: over 3 years ago

10.3389/fpls.2021.618140

Mycorrhizal Communities and Isotope Signatures in Two Partially Mycoheterotrophic Orchids
Cited by: 12
Author(s): Hans Jacquemyn, Rein Brys, Michael Waud, Alexandra Evans, Tomáš Figura, Marc‐André Selosse
Software Mentions: 2
Published: almost 4 years ago

10.7717/peerj.9550

Changes of diazotrophic communities in response to cropping systems in a Mollisol of Northeast China
Cited by: 12
Author(s): Jiaxun Zou, Qin Yao, Junjie Liu, Yansheng Li, Fuqiang Song, Xiaobing Liu
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0220081

Gaining ecological insight on dietary allocation among horseshoe bats through molecular primer combination
Cited by: 24
Author(s): Miren Aldasoro Lezea, Iñazio Garin, Nerea Vallejo, Unai Baroja, Aitor Arrizabalaga‐Escudero, Urtzi Goiti, Joxerra Aihartza
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0245030

Response of benthic macroinvertebrates to dam removal in the restoration of the Boardman River, Michigan, USA
Cited by: 6
Author(s): David C. Mahan, Joel T. Betts, Eric A. Nord, Fred Van Dyke, Jessica M. Outcalt
Software Mentions: 2
Published: over 3 years ago

10.3389/fpls.2015.01188

Distribution of Root-Associated Bacterial Communities Along a Salt-Marsh Primary Succession
Cited by: 23
Author(s): Miao Wang, Pu Yang, Joana Falcão Salles
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0160262

Soil Aggregate Stability and Grassland Productivity Associations in a Northern Mixed-Grass Prairie
Cited by: 14
Author(s): Kurt O. Reinhart, Lance T. Vermeire
Software Mentions: 2
Published: over 8 years ago

10.3389/fpls.2021.632689

Verticillium dahliae Inoculation and in vitro Propagation Modify the Xylem Microbiome and Disease Reaction to Verticillium Wilt in a Wild Olive Genotype
Cited by: 12
Author(s): Manuel Anguita-Maeso, J. L. Trapero-Casas, Concepción Olivares-García, David Ruano Rosa, Elena Palomo-Ríos, Rafael M. Jiménez‐Díaz, Juan A Navas‐Cortés, Blanca B. Landa
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0070316

Diverse Honeydew-Consuming Fungal Communities Associated with Scale Insects
Cited by: 28
Author(s): Manpreet K. Dhami, Bevan S. Weir, Michael W. Taylor, Jacqueline R. Beggs
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0042651

Assembly-History Dynamics of a Pitcher-Plant Protozoan Community in Experimental Microcosms
Cited by: 15
Author(s): Kohmei Kadowaki, Brian D. Inouye, Thomas E. Miller
Software Mentions: 2
Published: over 12 years ago

10.3389/fpls.2018.01480

The Association With Two Different Arbuscular Mycorrhizal Fungi Differently Affects Water Stress Tolerance in Tomato
Cited by: 62
Author(s): Veronica Volpe, Walter Chitarra, Pasquale Cascone, Maria Grazia Volpe, Paola Bartolini, Gloriano Moneti, Giuseppe Pieraccini, Claudia Di Serio, Biancaelena Maserti, Emilio Guerrieri, Raffaella Balestrini
Software Mentions: 2
Published: about 6 years ago

10.7717/peerj.9653

Increasing methane (CH4) emissions and altering rhizosphere microbial diversity in paddy soil by combining Chinese milk vetch and rice straw
Cited by: 7
Author(s): Qiang Ma, Jiwei Li, Muhammad Aamer, Huang Guo-qin
Software Mentions: 2
Published: over 4 years ago

10.3389/fpls.2021.693044

Mycorrhizal-Assisted Phytoremediation and Intercropping Strategies Improved the Health of Contaminated Soil in a Peri-Urban Area
Cited by: 10
Author(s): María T. Gómez-Sagasti, Carlos Garbisu, Julen Urra, Fátima Míguez, Unai Artetxe, A. Hernández, Juan Vilela, Itziar Alkorta, José M. Becerril
Software Mentions: 2
Published: over 3 years ago

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