cran: vegan | Projects | Ecosyste.ms: Papers

10.1002/ece3.4857

18S rRNA metabarcoding diet analysis of a predatory fish community across seasonal changes in prey availability
Cited by: 19
Author(s): Justin M. Waraniak, Terence L. Marsh, Kim T. Scribner
Software Mentions: 2
Published: over 7 years ago

10.3390/toxins13050351

Is the Cyanobacterial Bloom Composition Shifting Due to Climate Forcing or Nutrient Changes? Example of a Shallow Eutrophic Reservoir
Cited by: 7
Author(s): Morgane Le Moal, Alexandrine Pannard, Luc Brient, B Alexander Richard, Marion Chorin, Emilien Mineaud, Claudia Wiegand
Software Mentions: 2
Published: over 5 years ago

10.1002/ece3.3515

The Saturniidae of Barro Colorado Island, Panama: A model taxon for studying the long-term effects of climate change?
Cited by: 19
Author(s): Yves Basset, Greg P. A. Lamarre, Tom Ratz, Simon T. Segar, Thibaud Decaëns, Rodolphe Rougerie, Scott E. Miller, Filonila Perez, Ricardo Bobadilla, Yacksecari Lopez, José Alejandro Ramirez, Annette Aiello, Héctor Barrios
Software Mentions: 2
Published: almost 9 years ago

10.1186/s40168-017-0324-0

Microbial phylogeny determines transcriptional response of resistome to dynamic composting processes
Cited by: 56
Author(s): Cheng Wang, Dan Dong, Peter James Strong, Wenjie Zhu, Zhongshui Ma, Yong Qin, Weixiang Wu
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-018-38344-2

Leaf-associated microbiomes of grafted tomato plants
Cited by: 41
Author(s): Hirokazu Toju, Koji Okayasu, Michitaka Notaguchi
Software Mentions: 2
Published: over 7 years ago

10.1186/1472-6785-13-13

Insights into biodiversity sampling strategies for freshwater microinvertebrate faunas through bioblitz campaigns and DNA barcoding
Cited by: 18
Author(s): Brandon J. Laforest, Amanda K. Winegardner, Omar A. Zaheer, Nicholas W. Jeffery, Elizabeth E. Boyle, Sarah J. Adamowicz
Software Mentions: 2
Published: over 13 years ago

10.3390/plants9101404

Ailanthus altissima Forests Determine a Shift in Herbaceous Layer Richness: A Paired Comparison with Hardwood Native Forests in Sub-Mediterranean Europe
Cited by: 9
Author(s): Silvia Montecchiari, Giulio Tesei, Marina Allegrezza
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0166926

Pair Housing of Dairy Calves and Age at Pairing: Effects on Weaning Stress, Health, Production and Social Networks
Cited by: 50
Author(s): Sarah Bolt, Natasha Boyland, David T. Mlynski, Richard James, Darren P. Croft
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0148247

Searching for the Optimal Sampling Solution: Variation in Invertebrate Communities, Sample Condition and DNA Quality
Cited by: 10
Author(s): Martin M. Goßner, Jan-Frederic Struwe, Sarah Sturm, Simeon Max, Michelle McCutcheon, Wolfgang W. Weisser, Sharon E. Zytynska
Software Mentions: 2
Published: over 10 years ago

10.1111/jfb.14176

The future of fish‐based ecological assessment of European rivers: from traditional EU Water Framework Directive compliant methods to eDNA metabarcoding‐based approaches
Cited by: 39
Author(s): Didier Pont, Alice Valentini, Mathieu Rocle, Anthony Maire, Olivier Delaigue, Pauline Jean, Tony Déjean
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12903-018-0520-8

Apical periodontitis: preliminary assessment of microbiota by 16S rRNA high throughput amplicon target sequencing
Cited by: 25
Author(s): Federico Mussano, Ilario Ferrocino, Natalija Gavrilova, Tullio Genova, Alessandro Dell’Acqua, Luca Simone Cocolin, Stefano Carossa
Software Mentions: 2
Published: over 8 years ago

10.1002/ece3.3061

Factors shaping community assemblages and species co-occurrence of different trophic levels
Cited by: 13
Author(s): Valeria Trivellone, Stéphanie Bougeard, Simone Giavi, Patrik Krebs, Diego Balseiro, Stéphane Dray, Marco Moretti
Software Mentions: 2
Published: over 9 years ago

10.1186/s40168-017-0382-3

Seasonal, spatial, and maternal effects on gut microbiome in wild red squirrels
Cited by: 123
Author(s): Tiantian Ren, Stan Boutin, Murray M. Humphries, Ben Dantzer, Jamieson C. Gorrell, David W. Coltman, Andrew G. McAdam, Martin Wu
Software Mentions: 2
Published: almost 9 years ago

10.7717/peerj.7464

Communities of oil palm flower-visiting insects: investigating the covariation of Elaeidobius kamerunicus and other dominant species
Cited by: 8
Author(s): Akhmad Rizali, Bambang Tri Rahardjo, Sri Karindah, Fatma Ramadhani Wahyuningtyas, Nurindah Nurindah, Bandung Sahari, Yann Clough
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2018.03296

High Frequency Multi-Year Variability in Baltic Sea Microbial Plankton Stocks and Activities
Cited by: 30
Author(s): Carina Bunse, Stina Israelsson, Federico Baltar, Mireia Bertos‐Fortis, Emil Fridolfsson, Catherine Legrand, Elin Lindehoff, Markus V. Lindh, Sandra Martínez‐García, Jarone Pinhassi
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2021.657542

Effects of Clostridium butyricum, Sodium Butyrate, and Butyric Acid Glycerides on the Reproductive Performance, Egg Quality, Intestinal Health, and Offspring Performance of Yellow-Feathered Breeder Hens
Cited by: 16
Author(s): Yibing Wang, Yang Wang, Xuhui Lin, Zhongyong Gou, Qiuli Fan, Sufei Jiang
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-39603-6

Effects of naphthalene on soil fauna abundance and enzyme activity in the subalpine forest of western Sichuan, China
Cited by: 9
Author(s): Yuwei Liu, Fan Yang, Wanqin Yang, Fuzhong Wu, Zhenfeng Xu, Yang Liu, Li Zhang, Kai Yue, Xiangyin Ni, Liying Lan, Ya Chen
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-021-89606-5

Effect of a bioconverted product of Lotus corniculatus seed on the axillary microbiome and body odor
Cited by: 2
Author(s): Minji Kim, Setu Bazie Tagele, HyungWoo Jo, Min‐Chul Kim, Young Hun Jung, Yeong-Jun Park, Jai-Hyun So, Hae Jin Kim, Ho Jin Kim, Dong-Geol Lee, Seunghyun Kang, Jae‐Ho Shin
Software Mentions: 2
Published: over 5 years ago

10.1002/ece3.4879

Fire legacies in eastern ponderosa pine forests
Cited by: 10
Author(s): Caleb P. Roberts, Victoria M. Donovan, Carissa L. Wonkka, Larkin A. Powell, Craig R. Allen, David G. Angeler, David A. Wedin, Dirac Twidwell
Software Mentions: 2
Published: over 7 years ago

10.3390/ani9121052

Spider Monkeys Rule the Roost: Ateline Sleeping Sites Influence Rainforest Heterogeneity
Cited by: 8
Author(s): Andrew Whitworth, Lawrence Whittaker, Ruthmery Pillco Huarcaya, Eleanor Flatt, Marvin López Morales, Danielle Connor, Marina Garrido Priego, Adrian Forsyth, Christopher Beirne
Software Mentions: 2
Published: almost 7 years ago

10.1002/ece3.5769

Developing and applying a macroinvertebrate‐based multimetric index for urban rivers in the Niger Delta, Nigeria
Cited by: 22
Author(s): Augustine Ovie Edegbene, Francis O. Arimoro, Oghenekaro Nelson Odume
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-39399-5

Optimizing environmental DNA sampling effort for fish inventories in tropical streams and rivers
Cited by: 77
Author(s): Isabel Cantera, Kévin Cilleros, Alice Valentini, Axel Cerdan, Tony Déjean, Amaia Iribar, Pierre Taberlet, Régis Vigouroux, Sébastien Brosse
Software Mentions: 2
Published: over 7 years ago

10.7717/peerj.3202

Endosymbiont interference and microbial diversity of the Pacific coast tick,Dermacentor occidentalis, in San Diego County, California
Cited by: 49
Author(s): Nikos Gurfield, Saran Grewal, S Lynnie, Pedro J. Torres, Scott T. Kelley
Software Mentions: 2
Published: over 9 years ago

10.3390/md18020097

Carrageenans from the Red Seaweed Sarconema filiforme Attenuate Symptoms of Diet-Induced Metabolic Syndrome in Rats
Cited by: 37
Author(s): Ryan du Preez, Nicholas A. Paul, Peter Mouatt, Marwan E. Majzoub, Torsten Thomas, Sunil K. Panchal, Lindsay Brown
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.7526

Seasonal dynamics of microbial diversity in the rhizosphere of Ulmus pumila L. var. sabulosa in a steppe desert area of Northern China
Cited by: 12
Author(s): Tianyu Liang, Guang Yang, Yunxia Ma, Quan‐Hong Yao, Yongxiang Ma, Hao Ma, Yang Hu, Ying Yang, Shaoxiong Wang, Yiyong Pan, Gangtie Li
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0171369

Inoculum composition determines microbial community and function in an anaerobic sequential batch reactor
Cited by: 21
Author(s): Alessandra Perrotta, Rajkumari Kumaraswamy, Juan‐Rodrigo Bastidas‐Oyanedel, Eric J. Alm, Jorge Rodríguez
Software Mentions: 2
Published: over 9 years ago

10.3389/fphys.2019.01079

Effects of Dietary-SCFA on Microbial Protein Synthesis and Urinal Urea-N Excretion Are Related to Microbiota Diversity in Rumen
Cited by: 11
Author(s): Zhongyan Lu, Hong Shen, Zongzhuan Shen
Software Mentions: 2
Published: about 7 years ago

10.7717/peerj.4989

Dissemination of antibiotic resistance genes associated with the sporobiota in sediments impacted by wastewater
Cited by: 10
Author(s): Christophe Paul, Zhanna Bayrychenko, Thomas Junier, Sevasti Filippidou, Karin Beck, Matthieu Bueche, Gilbert Greub, Helmut Bürgmann, Pilar Junier
Software Mentions: 2
Published: about 8 years ago

10.1186/s40168-018-0412-9

Individual and household attributes influence the dynamics of the personal skin microbiota and its association network
Cited by: 41
Author(s): Marcus H. Y. Leung, Xinzhao Tong, David E. Wilkins, Hedwig H. L. Cheung, Patrick K. H. Lee
Software Mentions: 2
Published: over 8 years ago

10.3390/nu12040948

Bifidobacterium breve UCC2003 Exopolysaccharide Modulates the Early Life Microbiota by Acting as a Potential Dietary Substrate
Cited by: 19
Author(s): Deborah Püngel, Agatha Treveil, Matthew J. Dalby, Shabhonam Caim, Ian J. Colquhoun, Catherine Booth, Jennifer Ketskemety, Tamás Korcsmáros, Douwe van Sinderen, Melissa A. Lawson, Lindsay J. Hall
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-40150-3

Resilience of Central Pacific reefs subject to frequent heat stress and human disturbance
Cited by: 19
Author(s): Simon D. Donner, Jessica Carilli
Software Mentions: 2
Published: over 7 years ago

10.3390/nu10101403

Effects of Whole Milk Supplementation on Gut Microbiota and Cardiometabolic Biomarkers in Subjects with and without Lactose Malabsorption
Cited by: 25
Author(s): Xiaoqin Li, Jiawei Yin, Yalun Zhu, Xiaoqian Wang, Xiaoli Hu, Wei Bao, Yue Huang, Liangkai Chen, Sijing Chen, Wei Yang, Zhilei Shan, Liegang Liu
Software Mentions: 2
Published: almost 8 years ago

10.7717/peerj.4060

Evaluating the role of wild songbirds or rodents in spreading avian influenza virus across an agricultural landscape
Cited by: 5
Author(s): Derek D. Houston, Shahan Azeem, Coady W. Lundy, Yuko Sato, Baoqing Guo, Julie A. Blanchong, Phillip C. Gauger, David R. Marks, Kyoung‐Jin Yoon, James S. Adelman
Software Mentions: 2
Published: almost 9 years ago

10.1186/s40168-017-0352-9

Laboratory colonization stabilizes the naturally dynamic microbiome composition of field collected Dermacentor andersoni ticks
Cited by: 28
Author(s): Cory A. Gall, Glen A. Scoles, Krisztián Mágori, Kathleen L. Mason, Kelly A. Brayton
Software Mentions: 2
Published: almost 9 years ago

10.1002/ece3.7495

The role of bracket fungi in creating alpha diversity of invertebrates in the Białowieża National Park, Poland
Cited by: 2
Author(s): Anna K. Gdula, Szymon Konwerski, Izabella Olejniczak, Tomasz Rutkowski, Piotr Skubała, Bogna Zawieja, Dariusz J. Gwiazdowicz
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-40347-6

Intensity of Nosema ceranae infection is associated with specific honey bee gut bacteria and weakly associated with gut microbiome structure
Cited by: 62
Author(s): Andrey Rubanov, Kaleigh A. Russell, Jason A. Rothman, James C. Nieh, Quinn S. McFrederick
Software Mentions: 2
Published: over 7 years ago

10.1186/s12859-019-2965-4

iMAP: an integrated bioinformatics and visualization pipeline for microbiome data analysis
Cited by: 22
Author(s): Teresia Buza, Triza Tonui, Francesca Stomeo, Christian Keambou Tiambo, Robab Katani, Megan A. Schilling, Beatus Lyimo, Paul Gwakisa, Isabella M. Cattadori, Joram Buza, Vivek Kapur
Software Mentions: 2
Published: about 7 years ago

10.1186/s42523-021-00082-8

A diet-specific microbiota drives Salmonella Typhimurium to adapt its in vivo response to plant-derived substrates
Cited by: 5
Author(s): Nicoletta Prax, Stefanie Wagner, Jakob Schardt, Klaus Neuhaus, Thomas Clavel, Thilo M. Fuchs
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2020.578812

nifH Gene Sequencing Reveals the Effects of Successive Monoculture on the Soil Diazotrophic Microbial Community in Casuarina equisetifolia Plantations
Cited by: 5
Author(s): Liuting Zhou, Jianjuan Li, Ganga Raj Pokhrel, Jun Chen, Yanlin Zhao, Ying Bai, Chen Zhang, Wenxiong Lin, Zeyan Wu, Chengzhen Wu
Software Mentions: 2
Published: over 5 years ago

10.1186/s40168-018-0467-7

Mind the gut: genomic insights to population divergence and gut microbial composition of two marine keystone species
Cited by: 27
Author(s): Katharina Fietz, Christian Olaf Rye Hintze, Mikkel Skovrind, Tue Kjærgaard Nielsen, Morten T. Limborg, Marcus Anders Krag, Per J. Palsbøll, Lars Hestbjerg Hansen, Peter Rask Møller, M. Thomas P. Gilbert
Software Mentions: 2
Published: over 8 years ago

10.1186/s12898-019-0268-2

Shell resource partitioning as a mechanism of coexistence in two co-occurring terrestrial hermit crab species
Cited by: 3
Author(s): Sebastian Steibl, Christian Laforsch
Software Mentions: 2
Published: over 6 years ago

10.1186/s42523-019-0010-6

The microbiome of the invertebrate model host Galleria mellonella is dominated by Enterococcus
Cited by: 30
Author(s): Camille Nina Allonsius, Wannes Van Beeck, Ilke De Boeck, Stijn Wittouck, Sarah Lebeer
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2020.609950

Metagenomic Analysis of the Microbial Communities and Resistomes of Veal Calf Feces
Cited by: 8
Author(s): Debabrata Biswas, Seon Woo Kim, Ernest Hovingh, Jo Ann S. Van Kessel, Bradd J. Haley
Software Mentions: 2
Published: over 5 years ago

10.3390/ani11082461

Environment-Dependent Variation in Gut Microbiota of an Oviparous Lizard (Calotes versicolor)
Cited by: 6
Author(s): Zhihong Lin, Fang Yang, Ning Li, Buddhi Dayananda
Software Mentions: 2
Published: about 5 years ago

10.1155/2021/8894455

Performance Analysis and Microbial Community Evolution of In Situ Biological Biogas Upgrading with Increasing H2/CO2 Ratio
Cited by: 7
Author(s): Viola Corbellini, Feng Chen, Micol Bellucci, Arianna Catenacci, Tatiana Stella, Anna Espinoza-Tofalos, Francesca Malpei
Software Mentions: 2
Published: over 5 years ago

10.3389/fpubh.2021.657784

Insight Into Microbial Community Aerosols Associated With Electronic Waste Handling Facilities by Culture-Dependent and Culture-Independent Methods
Cited by: 6
Author(s): Yimin Pan, Qingyun Ren, Pei Chen, Jiguo Wu, Zhen Wu, Guoxia Zhang
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-41195-0

Diabetic cats have decreased gut microbial diversity and a lack of butyrate producing bacteria
Cited by: 37
Author(s): Ida Nordang Kieler, Melania Osto, Leoni Hugentobler, Lara Puetz, M. Thomas P. Gilbert, Torben Hansen, Oluf Pedersen, Claudia E Reusch, Eric Zini, Thomas Lutz, Charlotte Reinhard Bjørnvad
Software Mentions: 2
Published: over 7 years ago

10.7717/peerj.4965

Diversity, host-specificity and stability of sponge-associated fungal communities of co-occurring sponges
Cited by: 23
Author(s): Mary Nguyen, Torsten Thomas
Software Mentions: 2
Published: over 8 years ago

10.1002/ece3.5808

Distinguishing Anuran species by high‐resolution melting analysis of the COI barcode (COI‐HRM)
Cited by: 6
Author(s): Steven Everman, Shiao Y. Wang
Software Mentions: 2
Published: almost 7 years ago

10.1007/s13205-016-0546-z

Diversity of bacteria and archaea in the rhizosphere of bioenergy crop Jatropha curcas
Cited by: 13
Author(s): Garima Dubey, Bharati Kollah, V. K. Gour, Arvind Kumar Shukla, Santosh Ranjan Mohanty
Software Mentions: 2
Published: almost 10 years ago

10.1186/s40168-019-0643-4

Genomic and metatranscriptomic analyses of carbon remineralization in an Antarctic polynya
Cited by: 11
Author(s): So-Jeong Kim, Jong-Geol Kim, Sanghoon Lee, Soo-Je Park, Joo-Han Gwak, Man‐Young Jung, Won-Hyung Chung, Eun Jin Yang, Jisoo Park, Jinyoung Jung, Yoonsoo Hahn, Jang-Cheon Cho, Eugene L. Madsen, Francisco Rodríguez‐Valera, Jung‐Ho Hyun, Sung‐Keun Rhee
Software Mentions: 2
Published: over 7 years ago

10.1186/s40168-018-0546-9

Metatranscriptomics reveals a differential temperature effect on the structural and functional organization of the anaerobic food web in rice field soil
Cited by: 34
Author(s): Jingjing Peng, Carl‐Eric Wegner, Qicheng Bei, Pengfei Liu, Werner Liesack
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2017.01231

Aquarium Viromes: Viromes of Human-Managed Aquatic Systems
Cited by: 26
Author(s): Yiseul Kim, William Van Bonn, Tiong Gim Aw, Joan B. Rose
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0119966

Highly Heterogeneous Soil Bacterial Communities around Terra Nova Bay of Northern Victoria Land, Antarctica
Cited by: 32
Author(s): Min‐Cheol Kim, Ahnna Cho, Hyoun Soo Lim, Soon Gyu Hong, Jihee Kim, Joohan Lee, Taejin Choi, Tae-Seok Ahn, Ok-Sun Kim
Software Mentions: 2
Published: over 11 years ago

10.7717/peerj.157

Abundance-weighted phylogenetic diversity measures distinguish microbial community states and are robust to sampling depth
Cited by: 63
Author(s): Connor O. McCoy, F. A. Matsen
Software Mentions: 2
Published: about 13 years ago

10.1186/s13568-019-0937-8

Specific enrichment of microbes and increased ruminal propionate production: the potential mechanism underlying the high energy efficiency of Holstein heifers fed steam-flaked corn
Cited by: 21
Author(s): Hao Ren, Xiaodong Su, Hanxun Bai, Yaru Yang, Hongrong Wang, Dan Zhang, Jinbin Lu, Shengru Wu, Chuanjiang Cai, Yangchun Cao, Lei Xu, Junhu Yao
Software Mentions: 2
Published: almost 7 years ago

10.1038/ismej.2017.166

Aquatic urban ecology at the scale of a capital: community structure and interactions in street gutters
Cited by: 11
Author(s): Vincent Hervé, Boris Leroy, Albert Da Silva Pires, Pascal J. Lopez
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2018.02437

Interactive Effects of Pesticides and Nutrients on Microbial Communities Responsible of Litter Decomposition in Streams
Cited by: 16
Author(s): Florent Rossi, Stéphane Pesce, Clarisse Mallet, C. Margoum, Arnaud Chaumot, Matthieu Masson, Joan Artigas
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2020.00683

Impact of Salinity on the Gastrointestinal Bacterial Community of Theodoxus fluviatilis
Cited by: 12
Author(s): Carmen Kivistik, Jan Knobloch, Kairi Käiro, Helen Tammert, Veljo Kisand, Jan‐Peter Hildebrandt, Daniel P. R. Herlemann
Software Mentions: 2
Published: over 6 years ago

10.1002/mbo3.789

Characterizing the microbiota in gastrointestinal tract segments of Rhabdophis subminiatus: Dynamic changes and functional predictions
Cited by: 17
Author(s): Wenjiao Tang, Guangxiang Zhu, Qian Shi, Shijun Yang, Tianyuan Ma, Suchismita Mishra, Anxiang Wen, Huailiang Xu, Qin Wang, Yanzhi Jiang, Jiayun Wu, Meng Xie, Yongfang Yao, Diyan Li
Software Mentions: 2
Published: over 7 years ago

10.1186/s12866-021-02233-y

Optimisation of sample storage and DNA extraction for human gut microbiota studies
Cited by: 23
Author(s): Jekaterina Kazantseva, Esther Malv, Aleksei Kaleda, Aili Kallastu, Anne Meikas
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-41738-5

The potential probiotic Lactobacillus rhamnosus CNCM I-3690 strain protects the intestinal barrier by stimulating both mucus production and cytoprotective response
Cited by: 86
Author(s): Rebeca Martín, Célia Chamignon, Nadia Mhedbi-Hajri, Florian Chain, Muriel Derrien, Unai Escribano-Vázquez, Peggy Garault, Aurélie Cotillard, Hang-Phuong Pham, Christian Chervaux, Luis G. Bermúdez‐Humarán, Tamara Smokvina, Philippe Langella
Software Mentions: 2
Published: over 7 years ago

10.3390/plants9111501

Response of Horticultural Soil Microbiota to Different Fertilization Practices
Cited by: 12
Author(s): Iratxe Zarraonaindia, Xabier Simón Martínez‐Goñi, Olaia Liñero, Marta Muñoz-Colmenero, Mikel Aguirre, David Abad, Igor Baroja-Careaga, Alberto de Diego, Jack A. Gilbert, Andone Estonba
Software Mentions: 2
Published: almost 6 years ago

10.1002/mbo3.852

Genomic ecology of Marine Group II, the most common marine planktonic Archaea across the surface ocean
Cited by: 21
Author(s): Olivier Pereira, Corentin Hochart, Jean‐Christophe Auguet, Didier Debroas, Pierre E. Galand
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2019.01821

Community Composition and Diversity of Intestinal Microbiota in Captive and Reintroduced Przewalski’s Horse (Equus ferus przewalskii)
Cited by: 22
Author(s): Yimeng Li, Ke Zhang, Yang Liu, Kai Li, Defu Hu, Torsten Wronski
Software Mentions: 2
Published: about 7 years ago

10.1002/mbo3.909

Large‐scale distribution of bacterial communities in the Qaidam Basin of the Qinghai–Tibet Plateau
Cited by: 13
Author(s): Rui Xing, Qingbo Gao, Faqi Zhang, Jiuli Wang, Shilong Chen
Software Mentions: 2
Published: about 7 years ago

10.1002/ece3.504

Ecological immunology in a fluctuating environment: an integrative analysis of tree swallow nestling immune defense
Cited by: 31
Author(s): Gabriel Pigeon, Marc Bélisle, Dany Garant, Alan A. Cohen, Fanie Pelletier
Software Mentions: 2
Published: over 13 years ago

10.1038/s41598-019-42222-w

Gut resistome plasticity in pediatric patients undergoing hematopoietic stem cell transplantation
Cited by: 16
Author(s): Federica D’Amico, Matteo Soverini, Daniele Zama, Clarissa Consolandi, Marco Severgnini, Arcangelo Prete, Andrea Pession, Monica Barone, Silvia Turroni, Elena Biagi, Patrizia Brigidi, Riccardo Masetti, Simone Rampelli, Marco Candela
Software Mentions: 2
Published: over 7 years ago

10.3389/fvets.2020.544149

Meeting Breeding Potential in Organic and Low-Input Dairy Farming
Cited by: 6
Author(s): Hannah Davis, Sokratis Stergiadis, Eleni Chatzidimitriou, Roy Sanderson, Carlo Leifert, Gillian Butler
Software Mentions: 2
Published: almost 6 years ago

10.1002/mbo3.725

Comparative metagenomics of the gut microbiota in wild greylag geese (Anser anser) and ruddy shelducks (Tadorna ferruginea)
Cited by: 13
Author(s): Wang Wen, Sisi Zheng, Laixing Li, Yongsheng Yang, Yingbao Liu, Aizhen Wang, Kirill Sharshov, Yao Li
Software Mentions: 2
Published: about 8 years ago

10.1002/ece3.2147

Leaf lifespan is positively correlated with periods of leaf production and reproduction in 49 herb and shrub species
Cited by: 5
Author(s): Fang Lan Li, Xin Liu, Wei Kai Bao
Software Mentions: 2
Published: over 10 years ago

10.1038/s41598-021-93052-8

Exposure to (Z)-11-hexadecenal [(Z)-11-16:Ald] increases Brassica nigra susceptibility to subsequent herbivory
Cited by: 4
Author(s): Agnès Brosset, Monirul Islam, Sara Bonzano, Massimo E. Maffei, James D. Blande
Software Mentions: 2
Published: about 5 years ago

10.1002/ece3.2857

Functional roles of an engineer species for coastal benthic invertebrates and demersal fish
Cited by: 4
Author(s): Aurélie Chaalali, Anik Brind’Amour, Stanislas F. Dubois, Hervé Le Bris
Software Mentions: 2
Published: over 9 years ago

10.7717/peerj.4485

Ecosystem functional response across precipitation extremes in a sagebrush steppe
Cited by: 12
Author(s): Andrew T. Tredennick, Andrew R. Kleinhesselink, J. B. Taylor, Peter B. Adler
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2019.02144

Plant Identity Shaped Rhizospheric Microbial Communities More Strongly Than Bacterial Bioaugmentation in Petroleum Hydrocarbon-Polluted Sediments
Cited by: 24
Author(s): Dimitri J. Dagher, Ivan E. de la Providencia, Frédéric E. Pitre, Marc St‐Arnaud, Mohamed Hijri
Software Mentions: 2
Published: about 7 years ago

10.3389/fvets.2021.644738

Effect of Dried Distillers Grains With Solubles and Red Osier Dogwood Extract on Fermentation Pattern and Microbial Profiles of a High-Grain Diet in an Artificial Rumen System
Cited by: 2
Author(s): Walaa M.S. Gomaa, A.M. Saleem, Ran Tao, Long Jin, Mohamed Samir, E. J. McGeough, Kim Ominski, Lingyun Chen, Wenzhu Yang
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2019.00168

Rapid Transfer of Plant Photosynthates to Soil Bacteria via Ectomycorrhizal Hyphae and Its Interaction With Nitrogen Availability
Cited by: 88
Author(s): Stefan Gorka, Marlies Dietrich, Werner Mayerhofer, Raphael Gabriel, Julia Wiesenbauer, Victoria Martin, Qing Zheng, Bruna Imai, Judith Prommer, Marieluise Weidinger, Peter Schweiger, Stephanie A. Eichorst, Michael Wagner, Andreas Richter, Arno Schintlmeister, Dagmar Woebken, Christina Kaiser
Software Mentions: 2
Published: over 7 years ago

10.1038/s41396-019-0436-6

Microbial succession on decomposing root litter in a drought-prone Scots pine forest
Cited by: 67
Author(s): Claude Herzog, Martin Hartmann, Beat Frey, Beat Stierli, Cornélia Rumpel, Nina Buchmann, Ivano Brunner
Software Mentions: 2
Published: over 7 years ago

10.3390/nu12020287

Murine Genetic Background Overcomes Gut Microbiota Changes to Explain Metabolic Response to High-Fat Diet
Cited by: 22
Author(s): Zahra Safari, Aurélia Bruneau, Magali Monnoye, Mahendra Mariadassou, Catherine Philippe, Kurt Zatloukal, Philippe Gérard
Software Mentions: 2
Published: over 6 years ago

10.3389/fvets.2021.648698

Glycyrrhizin Attenuates Salmonella Typhimurium-Induced Tissue Injury, Inflammatory Response, and Intestinal Dysbiosis in C57BL/6 Mice
Cited by: 6
Author(s): Baikui Wang, Xiaolin Ye, Yuguang Zhou, Pengwei Zhao, Yulong Mao
Software Mentions: 2
Published: about 5 years ago

10.3389/fvets.2020.00146

Influence of Lactobacillus kefiri on Intestinal Microbiota and Fecal IgA Content of Healthy Dogs
Cited by: 11
Author(s): Alba Gaspardo, Augusta Zannoni, Silvia Turroni, Monica Barone, Maria Chiara Sabetti, Renato Giulio Zanoni, Monica Forni, Patrizia Brigidi, Marco Pietra
Software Mentions: 2
Published: over 6 years ago

10.3389/fvets.2014.00019

Characterization of the Vaginal Microbiota of Ewes and Cows Reveals a Unique Microbiota with Low Levels of Lactobacilli and Near-Neutral pH
Cited by: 103
Author(s): Jeffrey Swartz, Medora Lachman, Kelsey Westveer, Thomas OʼNeill, T. W. Geary, R. W. Kott, J. G. Berardinelli, P. G. Hatfield, Jennifer M. Thomson, A. J. Roberts, Carl J. Yeoman
Software Mentions: 2
Published: almost 12 years ago

10.1002/mbo3.676

Tillage intensity and pasture in rotation effectively shape soil microbial communities at a landscape scale
Cited by: 28
Author(s): Cédric Le Guillou, Nicolas Chemidlin Prévost-Bouré, Battle Karimi, Nouraya Akkal-Corfini, Samuel Dequiedt, Virginie Nowak, Sébastien Terrat, Safya Menasseri‐Aubry, Valérie Viaud, Pierre‐Alain Maron, Lionel Ranjard
Software Mentions: 2
Published: over 8 years ago

10.1002/mbo3.604

Dynamics of coral-associated microbiomes during a thermal bleaching event
Cited by: 32
Author(s): Wirulda Pootakham, Wuttichai Mhuantong, Lalita Putchim, Thippawan Yoocha, Chutima Sonthirod, Wasitthee Kongkachana, Duangjai Sangsrakru, Chaiwat Naktang, Nukoon Jomchai, Nalinee Thongtham, Sithichoke Tangphatsornruang
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-020-69845-8

The alteration of gut microbiome and metabolism in amyotrophic lateral sclerosis patients
Cited by: 58
Author(s): Qianqian Zeng, Jie Shen, Kangzhi Chen, Jinxia Zhou, Qiao Liao, Ke Lü, Jiao Yuan, Fangfang Bi
Software Mentions: 2
Published: about 6 years ago

10.3390/plants9121640

Structure of the Chemical and Genetic Diversity of the True Lavender over Its Natural Range
Cited by: 14
Author(s): Yolande Despinasse, Sandrine Moja, Catherine Soler, Frédéric Jullien, Bernard Pasquier, Jean‐Marie Bessière, Sylvie Baudino, Florence Nicolè
Software Mentions: 2
Published: almost 6 years ago

10.1002/ece3.6538

Climate and vegetation structure shape ant communities along elevational gradients on the Colorado Plateau
Cited by: 12
Author(s): Derek A. Uhey, Richard W. Hofstetter, Michael Remke, Sneha Vissa, Karen A. Haubensak
Software Mentions: 2
Published: about 6 years ago

10.1002/ece3.4547

Genetic and chemical divergence among host races of a socially parasitic ant
Cited by: 6
Author(s): Candice W. Torres, Maria A. Tonione, Santiago R. Ramírez, Joseph Sapp, Neil D. Tsutsui
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2020.01753

Life at the Frozen Limit: Microbial Carbon Metabolism Across a Late Pleistocene Permafrost Chronosequence
Cited by: 15
Author(s): Mary-Cathrine Leewis, Renaud Berlemont, David C. Podgorski, Archana Srinivas, Phoebe Zito, Robert G. M. Spencer, J. W. Mcfarland, Thomas A. Douglas, Christopher H. Conaway, Mark P. Waldrop, Rachel Mackelprang
Software Mentions: 2
Published: about 6 years ago

10.1002/ece3.6710

Miocene diversification of a golden‐thread nanmu tree species (Phoebe zhennan, Lauraceae) around the Sichuan Basin shaped by the East Asian monsoon
Cited by: 17
Author(s): Jianhua Xiao, Ding Xin, Lang Li, Hui Ma, Xiuqin Ci, Marlien van der Merwe, John G. Conran, Jie Li
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0082432

Microbiota and Metabolite Profiling Reveal Specific Alterations in Bacterial Community Structure and Environment in the Cystic Fibrosis Airway during Exacerbation
Cited by: 63
Author(s): Kate B. Twomey, Mark Alston, Shi-Qi An, Oisin O’Connell, Yvonne McCarthy, David Swarbreck, Melanie Febrer, J. Maxwell Dow, Barry J. Plant, Robert P. Ryan
Software Mentions: 2
Published: almost 13 years ago

10.1002/ece3.3

Population delimitation across contrasting evolutionary clines in deer mice (Peromyscus maniculatus)
Cited by: 9
Author(s): Yang Ds, G. J. Kenagy
Software Mentions: 2
Published: over 15 years ago

10.3389/fmicb.2021.652031

Correlation of Breed, Growth Performance, and Rumen Microbiota in Two Rustic Cattle Breeds Reared Under Different Conditions
Cited by: 18
Author(s): Matteo Daghio, Francesca Ciucci, Arianna Buccioni, Alice Cappucci, Laura Casarosa, Andrea Serra, Giuseppe Conte, Carlo Viti, Breanne McAmmond, Jonathan D. Van Hamme, Marcello Mele
Software Mentions: 2
Published: over 5 years ago

10.1186/s12983-020-00353-1

Ultrasonic vocalizations in house mice depend upon genetic relatedness of mating partners and correlate with subsequent reproductive success
Cited by: 19
Author(s): Doris Nicolakis, Maria Adelaide Marconi, Sarah M. Zala, Dustin J. Penn
Software Mentions: 2
Published: over 6 years ago

10.3390/md16060216

Dietary Supplementation with a Magnesium-Rich Marine Mineral Blend Enhances the Diversity of Gastrointestinal Microbiota
Cited by: 37
Author(s): Evelyn M. Crowley, Caitríona M. Long-Smith, Amy Murphy, Elaine Patterson, Kiera Murphy, Denise M. O’Gorman, Catherine Stanton, Yvonne M. Nolan
Software Mentions: 2
Published: about 8 years ago

10.1002/ece3.4015

Shell morphology and color of the subtidal whelk Buccinum undatum exhibit fine‐scaled spatial patterns
Cited by: 9
Author(s): Hildur Magnúsdóttir, Snæbjörn Pálsson, Kristen M. Westfall, Zophonı́as O. Jónsson, Erla Björk Örnólfsdóttir
Software Mentions: 2
Published: over 8 years ago

10.1002/ece3.1522

Environmental factors prevail over dispersal constraints in determining the distribution and assembly of Trichoptera species in mountain lakes
Cited by: 8
Author(s): Guillermo de Mendoza, Marc Ventura, Jordi Catalan
Software Mentions: 2
Published: over 11 years ago

10.1038/s41598-020-63003-w

Nest boxes do not cause a shift in bat community composition in an urbanised landscape
Cited by: 12
Author(s): Stephen R. Griffiths, Linda F. Lumsden, Kylie A. Robert, Pia E. Lentini
Software Mentions: 2
Published: over 6 years ago

10.1186/s12866-020-01817-4

Viral metagenomic analysis of fecal samples reveals an enteric virome signature in irritable bowel syndrome
Cited by: 19
Author(s): Mina Ansari, Mehregan Ebrahimi, Mohammad Reza Fattahi, Michael G. Gardner, Ali Reza Safarpour, Mohammad Ali Faghihi, Kamran Bagheri Lankarani
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-42455-9

Comprehensive biodiversity analysis via ultra-deep patterned flow cell technology: a case study of eDNA metabarcoding seawater
Cited by: 68
Author(s): Gregory A. C. Singer, Nicole A Fahner, Joshua G Barnes, Avery McCarthy, Mehrdad Hajibabaei
Software Mentions: 2
Published: over 7 years ago

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