10.7717/peerj.157

Abundance-weighted phylogenetic diversity measures distinguish microbial community states and are robust to sampling depth
Cited by: 63
Author(s): Connor O. McCoy, F. A. Matsen
Software Mentions: 2
Published: about 13 years ago

10.1038/s41598-019-47656-w

A simple, reproducible and cost-effective procedure to analyse gut phageome: from phage isolation to bioinformatic approach
Cited by: 27
Author(s): Camille d’Humières, Marie Touchon, Sara Dion, Jean Cury, Amine Ghozlane, Marc García-Garcerà, Christiane Bouchier, Laurence Ma, Erick Denamur, Eduardo P. C. Rocha
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-47899-7

Detection of introduced and resident marine species using environmental DNA metabarcoding of sediment and water
Cited by: 90
Author(s): Luke E. Holman, Mark de Bruyn, Simon Creer, Gary R. Carvalho, Julie Robidart, Marc Rius
Software Mentions: 2
Published: about 7 years ago

10.1038/ismej.2015.38

Priority effects during fungal community establishment in beech wood
Cited by: 151
Author(s): Jennifer Hiscox, Melanie Savoury, Carsten T. Müller, Björn D. Lindahl, Hilary J. Rogers, Lynne Boddy
Software Mentions: 2
Published: over 11 years ago

10.7717/peerj.4965

Diversity, host-specificity and stability of sponge-associated fungal communities of co-occurring sponges
Cited by: 23
Author(s): Mary Nguyen, Torsten Thomas
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-019-48125-0

Community phylogenetic structure reveals the imprint of dispersal-related dynamics and environmental filtering by nutrient availability in freshwater diatoms
Cited by: 15
Author(s): François Keck, Maria Kahlert
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-48294-y

Rumen bacterial community responses to DPA, EPA and DHA in cattle and sheep: A comparative in vitro study
Cited by: 20
Author(s): David Carreño, Pablo G. Toral, Eric Pinloche, Álvaro Belenguer, D. R. Yáñez-Ruíz, Gonzalo Hervás, Neil McEwan, C. J. Newbold, Pilar Frutos
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-48434-4

Analysis of the TCR Repertoire in HIV-Exposed but Uninfected Infants
Cited by: 18
Author(s): Benjamin Gabriel, Carey L. Medin, Jeremiah Alves, Ruth Nduati, Rose Bosire, Dalton Wamalwa, Carey Farquhar, Grace John‐Stewart, Barbara Lohman-Payne
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-48325-8

Land Use Change Increases Wildlife Parasite Diversity in Anamalai Hills, Western Ghats, India
Cited by: 17
Author(s): Debapriyo Chakraborty, M. Balakrishna Reddy, Sunil Tiwari, Govindhaswamy Umapathy
Software Mentions: 2
Published: about 7 years ago

10.7717/peerj.4989

Dissemination of antibiotic resistance genes associated with the sporobiota in sediments impacted by wastewater
Cited by: 10
Author(s): Christophe Paul, Zhanna Bayrychenko, Thomas Junier, Sevasti Filippidou, Karin Beck, Matthieu Bueche, Gilbert Greub, Helmut Bürgmann, Pilar Junier
Software Mentions: 2
Published: about 8 years ago

10.1007/s10493-020-00587-y

Patterns of intraspecific morphological variability in soil mites reflect their dispersal ability
Cited by: 1
Author(s): Julia Baumann
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2020.01354

Water Microbiota in Greenhouses With Soilless Cultures of Tomato by Metabarcoding and Culture-Dependent Approaches
Cited by: 4
Author(s): Adeline Picot, José F. Cobo‐Díaz, Audrey Pawtowski, Christelle Donot, Fabienne Legrand, Gaétan Le Floch, F. Déniel
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-019-49290-y

Temporal variation of eukaryotic community structures in UASB reactor treating domestic sewage as revealed by 18S rRNA gene sequencing
Cited by: 23
Author(s): Yuga Hirakata, Masashi Hatamoto, Mamoru Oshiki, Takahiro Watari, Kyohei Kuroda, Nobuo Araki, Takashi Yamaguchi
Software Mentions: 2
Published: about 7 years ago

10.1017/S0950268815000965

Prevalent high-risk HPV infection and vaginal microbiota in Nigerian women
Cited by: 92
Author(s): Eileen Dareng, Bing Ma, Ayo Famooto, Sally Akarolo-Anthony, Richard Offiong, Olayinka Olaniyan, Patrick Dakum, Cosette M. Wheeler, Doug Fadrosh, Hao Yang, Pawel Gajer, Rebecca M. Brotman, Jacques Ravel, Clement Adebamowo
Software Mentions: 2
Published: over 11 years ago

10.1038/s41598-019-49854-y

Conventional and organic soil management as divergent drivers of resident and active fractions of major soil food web constituents
Cited by: 46
Author(s): Paula Harkes, Afnan Khalil Ahmad Suleiman, S.J.J. van den Elsen, J.J. de Haan, M.H.M. Holterman, Eiko E. Kuramae, J. Helder
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-49555-6

Disentangling the environmental impact of different human disturbances: a case study on islands
Cited by: 16
Author(s): Sebastian Steibl, Christian Laforsch
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-50187-z

Impacts of environmental complexity on respiratory and gut microbiome community structure and diversity in growing pigs
Cited by: 30
Author(s): Ameer Megahed, Mohamed Zeineldin, Kaleigh L. Evans, Nidia Maradiaga, Ben Blair, Brian Aldridge, James Lowe
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-48871-1

Species-energy relationships of indigenous and invasive species may arise in different ways – a demonstration using springtails
Cited by: 6
Author(s): Anne M. Treasure, Peter C. le Roux, Mashudu H. Mashau, Steven L. Chown
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-50200-5

Characteristics and Evolution of sill-driven off-axis hydrothermalism in Guaymas Basin – the Ringvent site
Cited by: 27
Author(s): Andreas Teske, Luke J. McKay, Ana Christina Ravelo, Ivano Aiello, C. Mortera, Fernando Núñez‐Useche, Carles Canet, Jeffrey P. Chanton, Benjamin Brunner, Christian Hensen, Gustavo A. Ramírez, Ryan J. Sibert, Tiffany Turner, Dylan White, Christopher R. Chambers, Andrew Buckley, Samantha B. Joye, S. Adam Soule, D. Lizarralde
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-50344-4

Rice bran supplementation modulates growth, microbiota and metabolome in weaning infants: a clinical trial in Nicaragua and Mali
Cited by: 28
Author(s): Luis Enrique Zambrana, Starin McKeen, Hend Ibrahim, Iman Zarei, Erica C. Borresen, Lassina Doumbia, Abdoulaye Boré, Alima Cissoko, Seydou Douyon, Karim Koné, J García Pérez, Claudia Pérez, Ann Hess, Zaid Abdo, Lansana Sangaré, Ababacar Maïga, Sylvia Becker‐Dreps, Lijuan Yuan, Ousmane Koïta, Samuel Vílchez, Elizabeth P. Ryan
Software Mentions: 2
Published: almost 7 years ago

10.7717/peerj.6139

Species turnover in plants does not predict turnover in flower-visiting insects
Cited by: 2
Author(s): John P. Simaika, Michael J. Samways, Sven M. Vrdoljak
Software Mentions: 2
Published: over 7 years ago

10.7717/peerj.9593

Improved normalization of species count data in ecology by scaling with ranked subsampling (SRS): application to microbial communities
Cited by: 90
Author(s): Lukas Beule, Petr Karlovský
Software Mentions: 2
Published: about 6 years ago

10.7717/peerj.333

A cross-ocean comparison of responses to settlement cues in reef-building corals
Cited by: 22
Author(s): Sarah W. Davies, Eli Meyer, Sarah Guermond, Mikhail V. Matz
Software Mentions: 2
Published: over 12 years ago

10.3390/epigenomes4040028

Methylomes in Vegans versus Pescatarians and Nonvegetarians
Cited by: 2
Author(s): Valery Filippov, Karen Jaceldo‐Siegl, Alexey Eroshkin, Vasiliy Loskutov, Xin Chen, Charles Wang, Penelope J. Duerksen-Hughes
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-019-51291-w

Sexual and genotypic variation in terpene quantitative and qualitative profiles in the dioecious shrub Baccharis salicifolia
Cited by: 7
Author(s): Xoaquín Moreira, Luis Abdala‐Roberts, Colleen S. Nell, Carla Vázquez‐González, Jessica D. Pratt, Ken Keefover‐Ring, Kailen A. Mooney
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-50952-0

The capacity of wastewater treatment plants drives bacterial community structure and its assembly
Cited by: 22
Author(s): Young Kyung Kim, Keunje Yoo, Min Sung Kim, Il Ki Han, Minjoo Larry Lee, Bo Ram Kang, Tae Kwon Lee, Joonhong Park
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2020.570926

Antimicrobial Activity Against Phytopathogens and Inhibitory Activity on Solanine in Potatoes of the Endophytic Bacteria Isolated From Potato Tubers
Cited by: 21
Author(s): Jiameng Liu, Shanshan Wang, Xu Zheng, Nanguo Jin, Lu Jia, Yatao Huang, Bin Fan, Fengzhong Wang
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-019-51488-z

Changes in motor behavior, neuropathology, and gut microbiota of a Batten disease mouse model following administration of acidified drinking water
Cited by: 18
Author(s): Tyler B. Johnson, Logan M. Langin, Jing Zhao, Jill M. Weimer, David A. Pearce, Attila Kovács
Software Mentions: 2
Published: almost 7 years ago

10.3390/microorganisms7020057

Rotations with Indian Mustard and Wild Rocket Suppressed Cucumber Fusarium Wilt Disease and Changed Rhizosphere Bacterial Communities
Cited by: 20
Author(s): Jun Xue, Jian Wang, Dalong Li, Fengzhi Wu, Xingang Zhou
Software Mentions: 2
Published: over 7 years ago

10.7717/peerj.6891

Dietary supplementation of black soldier fly (<i>Hermetica illucens)</i>meal modulates gut microbiota, innate immune response and health status of marron (<i>Cherax cainii</i>, Austin 2002) fed poultry-by-product and fishmeal based diets
Cited by: 37
Author(s): Javed Foysal, Ravi Fotedar, Chin Yen Tay, Sanjay Kumar Gupta
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2018.02691

Uterine Microbiota of Dairy Cows With Clinical and Subclinical Endometritis
Cited by: 45
Author(s): Meng Ling Wang, Ming Chao Liu, Jin Xu, Li Gang An, Jiu Feng Wang, Yao Hong Zhu
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-019-52648-x

Temporal and spatial dynamics of Bacteria, Archaea and protists in equatorial coastal waters
Cited by: 30
Author(s): Caroline Chénard, Winona Wijaya, Daniel Vaulot, Adriana Lopes dos Santos, Patrick Martin, Avneet Kaur, Federico M. Lauro
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-53060-1

Limnological effects of a large Amazonian run-of-river dam on the main river and drowned tributary valleys
Cited by: 26
Author(s): Rafael M. Almeida, Stephen K. Hamilton, Emma J. Rosi‐Marshall, João Durval Arantes, Nathan Barros, Gina Boemer, Anderson Gripp, Vera L. M. Huszar, Pedro C. Junger, M. G. de Lima, F. Pacheco, Dirceu Tornavoi de Carvalho, Alexander J. Reisinger, Lúcia Helena Sampaio da Silva, Fábio Roland
Software Mentions: 2
Published: almost 7 years ago

10.7717/peerj.6962

Stochastic and deterministic drivers of seasonal variation of fungal community in tobacco field soil
Cited by: 1
Author(s): Xing Li, Tianming Li, Delong Meng, Tianbo Liu, Yongjun Liu, Huaqun Yin, Jie Deng, Zeng Song-rong, Li Shen
Software Mentions: 2
Published: over 7 years ago

10.7717/peerj.1576

Biogeographic barriers drive co-diversification within associated eukaryotes of the<i>Sarracenia alata</i>pitcher plant system
Cited by: 11
Author(s): Jordan D. Satler, Amanda J. Zellmer, Bryan C. Carstens
Software Mentions: 2
Published: over 10 years ago

10.1038/s41598-019-53409-6

Projected impacts of climate change on functional diversity of frugivorous birds along a tropical elevational gradient
Cited by: 32
Author(s): Irene M. A. Bender, W. Daniel Kissling, Katrin Böhning‐Gaese, Isabell Hensen, Ingolf Kühn, Larissa Nowak, Till Töpfer, Thorsten Wiegand, D. Matthias Dehling, Matthias Schleuning
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-54725-7

Bridging population genetics and the metacommunity perspective to unravel the biogeographic processes shaping genetic differentiation of Myriophyllum alterniflorum DC.
Cited by: 6
Author(s): Jorge García‐Girón, Pedro Garcı́a, Margarita Fernández‐Aláez, Eloy Bécares, Camino Fernández‐Aláez
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-54628-7

Landscape-scale terrestrial factors are also vital in shaping Odonata assemblages of watercourses
Cited by: 25
Author(s): H. Beáta Nagy, Zsuzsanna László, Flóra Szabó, Lilla Szőcs, György Dévai, Béla Tóthmérész
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-54866-9

The effects of temperature and dispersal on species diversity in natural microbial metacommunities
Cited by: 5
Author(s): Elodie C. Parain, Sarah M. Gray, Louis‐Félix Bersier
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-54869-6

Host phylogeny, diet, and habitat differentiate the gut microbiomes of Darwin’s finches on Santa Cruz Island
Cited by: 33
Author(s): Wesley T. Loo, Jefferson García-Loor, Rachael Y. Dudaniec, Sonia Kleindorfer, Colleen M. Cavanaugh
Software Mentions: 2
Published: almost 7 years ago

10.7717/peerj.3620

Urbanization alters communities of flying arthropods in parks and gardens of a medium-sized city
Cited by: 44
Author(s): Edward Lagucki, Justin D. Burdine, Kevin E. McCluney
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-019-55843-y

Simultaneous detection and comprehensive analysis of HPV and microbiome status of a cervical liquid-based cytology sample using Nanopore MinION sequencing
Cited by: 18
Author(s): Lili Quan, Ruyi Dong, Wenjuan Yang, Lanyou Chen, Jidong Lang, Jia Liu, Yu Song, Shuiqing Ma, Jialiang Yang, Weiwei Wang, Bo Meng, Geng Tian
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-56042-5

Picoplankton accumulate and recycle polyphosphate to support high primary productivity in coastal Lake Ontario
Cited by: 15
Author(s): Jiying Li, Diane Plouchart, Arthur Zastepa, Maria Dittrich
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0165206

Key Microbiota Identification Using Functional Gene Analysis during Pepper (Piper nigrum L.) Peeling
Cited by: 0
Author(s): Jiachao Zhang, Qisong Hu, Chang Xu, Sixin Liu, Congfa Li
Software Mentions: 2
Published: almost 10 years ago

10.1128/mSystems.00055-20

Mucosal Microbiota and Metabolome along the Intestinal Tract Reveal a Location-Specific Relationship
Cited by: 23
Author(s): Ce Yuan, Melanie L. Graham, Christopher Staley, Subbaya Subramanian
Software Mentions: 2
Published: about 6 years ago

10.7717/peerj.3743

Growth, stoichiometry and cell size; temperature and nutrient responses in haptophytes
Cited by: 18
Author(s): Lars Fredrik Skau, Tom Andersen, Jan‐Erik Thrane, Dag O. Hessen
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-019-56046-1

Land use affects lowland stream ecosystems through dissolved oxygen regimes
Cited by: 19
Author(s): Paula C. dos Reis Oliveira, Harm G. van der Geest, Michiel H.S. Kraak, P.F.M. Verdonschot
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-55859-4

Time-course relationship between environmental factors and microbial diversity in tobacco soil
Cited by: 22
Author(s): Zhaobao Wang, Yan Yang, Yuzhen Xia, Tao Wu, Jie Zhu, Jianming Yang, Zhengfeng Li
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-57228-7

Biodegradability of woody film produced by solvent volatilisation of Japanese Beech solution
Cited by: 2
Author(s): Т. В. Волкова, Sui Kanazawa, Norihisa Matsuura, Ryoko Yamamoto-Ikemoto
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2021.674004

Prokaryotic, Fungal, and Unicellular Eukaryotic Core Communities Across Three Sympatric Marine Sponges From the Southwestern Atlantic Coast Are Dominated Largely by Deterministic Assemblage Processes
Cited by: 6
Author(s): Cristiane Cassiolato Pires Hardoim, Gisele Lôbo‐Hajdu, Márcio R. Custódio, Pablo R. Hardoim
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.11075

Limited influence of marine sediment lyophilization on prokaryotic community structure assessed via amplicon sequencing: an example from environmentally contrasted sediment layers in Toulon harbor (France)
Cited by: 0
Author(s): Benjamin Misson, Cédric Garnier, Alexandre J. Poulain
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.5208

Marine cyanolichens from different littoral zones are associated with distinct bacterial communities
Cited by: 21
Author(s): Nyree J. West, Delphine Parrot, Claire Fayet, Martín Grube, Sophie Tomasi, Marcelino T. Suzuki
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-021-88110-0

New lineages of photobionts in Bolivian lichens expand our knowledge on habitat preferences and distribution of Asterochloris algae
Cited by: 13
Author(s): Magdalena Kosecka, Beata Guzow-Krzemińska, Ivana Černajová, Pavel Škaloud, Agnieszka Jabłońska, Martin Kukwa
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-87671-4

A novel assessment considering spatial and temporal variations of water quality to identify pollution sources in urban rivers
Cited by: 24
Author(s): Shu Yang, Muxuan Liang, Zesheng Qin, Yiwu Qian, Mei Li, Y. Cao
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-88495-y

Streptomyces strains modulate dynamics of soil bacterial communities and their efficacy in disease suppression caused by Phytophthora capsici
Cited by: 18
Author(s): Sakineh Abbasi, Aymé Spor, Akram Sadeghi, Naser Safaie
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-88252-1

The airborne mycobiome and associations with mycotoxins and inflammatory markers in the Norwegian grain industry
Cited by: 4
Author(s): Anne Straumfors, Sunil Mundra, Oda A H Foss, Steen Mollerup, Hävard Kauserud
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.6460

Considerations for studying transmission of antimicrobial resistant enteric bacteria between wild birds and the environment on intensive dairy and beef cattle operations
Cited by: 5
Author(s): Kristin Tormoehlen, Yvette J. Johnson-Walker, Emily W. Lankau, Maung San Myint, John A. Herrmann
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-021-88981-3

Inheritable testicular metabolic memory of high-fat diet causes transgenerational sperm defects in mice
Cited by: 16
Author(s): Luís Crisóstomo, Ivana Jarak, Luís Rato, João Filipe Raposo, Rachel L. Batterham, Pedro F. Oliveira, Marco G. Alves
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2017.00738

Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life
Cited by: 184
Author(s): Linda Wampach, Anna Heintz‐Buschart, Angela Hogan, Emilie Muller, Shaman Narayanasamy, Cédric Christian Laczny, Luisa W. Hugerth, Lutz Bindl, Jean Bottu, Anders F. Andersson, Carine de Beaufort, Paul Wilmes
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-021-88288-3

Community composition and functional prediction of prokaryotes associated with sympatric sponge species of southwestern Atlantic coast
Cited by: 8
Author(s): Cristiane Cassiolato Pires Hardoim, Andressa Cristina Ramaglia, Gisele Lôbo‐Hajdu, Márcio R. Custódio
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-89166-8

The gut microbiome is associated with brain structure and function in schizophrenia
Cited by: 43
Author(s): Shijia Li, Jié Song, Pengfei Ke, Lingyin Kong, Bingye Lei, Jing Zhou, Yuanyuan Huang, Hehua Li, Guixiang Li, Jun Chen, Xiaobo Li, Zhiming Xiang, Yuping Ning, Fengchun Wu, Kai Wu
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.5289

Trends in bacterial and fungal communities in ant nests observed with Terminal-Restriction Fragment Length Polymorphism (T-RFLP) and Next Generation Sequencing (NGS) techniques—validity and compatibility in ecological studies
Cited by: 20
Author(s): Stafva Lindström, Owen Rowe, Sari Timonen, Liselotte Sundström, Helena Johansson
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-021-88999-7

Impact of environmental changes on the behavioral diversity of the Odonata (Insecta) in the Amazon
Cited by: 17
Author(s): Bethânia Oliveira de Resende, Victor Rennan Santos Ferreira, Leandro Schlemmer Brasil, Lenize Batista Calvão, Thiago Pereira Mendes, Fernando Geraldo Carvalho, Cristian Camilo Mendoza-Penagos, Rafael Costa Bastos, Joás da Silva Brito, José Max Barbosa de Oliveira, Karina Dias-Silva, Ana Luiza‐Andrade, Rhainer Guillermo, Adolfo Cordero‐Rivera, Leandro Juen
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-89606-5

Effect of a bioconverted product of Lotus corniculatus seed on the axillary microbiome and body odor
Cited by: 2
Author(s): Minji Kim, Setu Bazie Tagele, HyungWoo Jo, Min‐Chul Kim, Young Hun Jung, Yeong-Jun Park, Jai-Hyun So, Hae Jin Kim, Ho Jin Kim, Dong-Geol Lee, Seunghyun Kang, Jae‐Ho Shin
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.11520

Dynamics of rumen bacterial composition of yak (<i>Bos grunniens</i>) in response to dietary supplements during the cold season
Cited by: 6
Author(s): Anum Ali Ahmad, Jian Bo Zhang, Linhao Zhong, Chao Yang, Qudratullah Kalwar, Tariq Shah, Mei Du, Ishaq Muhammad, Juanshan Zheng, Ping Yan, Xuezhi Ding, Ruijun Long
Software Mentions: 2
Published: over 5 years ago

10.3390/microorganisms8121913

Contrasting Environmental Drivers Determine Biodiversity Patterns in Epiphytic Lichen Communities along a European Gradient
Cited by: 9
Author(s): Pilar Hurtado, María Prieto, Francesco de Bello, Gregorio Aragón, Jesús López‐Angulo, Paolo Giordani, Eva Maria Diaz-Pena, Rebeca Vicente, Sonia Merinero, Alica Košuthová, Renato Benesperi, Elisabetta Bianchi, Helmut Mayrhofer, Juri Nascimbene, Martín Grube, Mats Wedin, Martin Westberg, Isabel Martínez
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2017.00801

Spatial Structure of the Mormon Cricket Gut Microbiome and its Predicted Contribution to Nutrition and Immune Function
Cited by: 25
Author(s): Chad C. Smith, Robert B. Srygley, Frank Healy, Karthikeyan Swaminath, Ulrich G. Mueller
Software Mentions: 2
Published: over 9 years ago

10.7717/peerj.3594

The effect of captivity on the skin microbial symbionts in three Atelopus species from the lowlands of Colombia and Ecuador
Cited by: 14
Author(s): Sandra V. Flechas, Ailín Blasco-Zúñiga, Andrés Merino‐Viteri, Valeria Ramírez‐Castañeda, Miryan Rivera, Adolfo Amézquita
Software Mentions: 2
Published: about 9 years ago

10.7717/peerj.8517

Microbial communities on fish eggs from <i>Acanthopagrus schlegelii</i> and <i>Halichoeres nigrescens</i> at the XuWen coral reef in the Gulf of Tonkin
Cited by: 4
Author(s): Shaoping Bai, Gang Hou
Software Mentions: 2
Published: over 6 years ago

10.1038/s41396-020-00751-7

The initial inoculation ratio regulates bacterial coculture interactions and metabolic capacity
Cited by: 38
Author(s): Chunhui Gao, Hui Cao, Peng Cai, Søren J. Sørensen
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2018.03296

High Frequency Multi-Year Variability in Baltic Sea Microbial Plankton Stocks and Activities
Cited by: 30
Author(s): Carina Bunse, Stina Israelsson, Federico Baltar, Mireia Bertos‐Fortis, Emil Fridolfsson, Catherine Legrand, Elin Lindehoff, Markus V. Lindh, Sandra Martínez‐García, Jarone Pinhassi
Software Mentions: 2
Published: over 7 years ago

10.7717/peerj.6412

Impact of intercropping on the coupling between soil microbial community structure, activity, and nutrient-use efficiencies
Cited by: 53
Author(s): Tengxiang Lian, Yinghui Mu, Jian Jin, Qibin Ma, Yanbo Cheng, Zhandong Cai, Hai Nian
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-021-92205-z

Influence of prokaryotic microorganisms on initial soil formation along a glacier forefield on King George Island, maritime Antarctica
Cited by: 9
Author(s): Patryk Krauze, Dirk Wagner, Shuai Yang, Diogo Spinola, Peter Kühn
Software Mentions: 2
Published: about 5 years ago

10.7717/peerj.2459

Spatial heterogeneity of physicochemical properties explains differences in microbial composition in arid soils from Cuatro Cienegas, Mexico
Cited by: 22
Author(s): Silvia Pajares, Ana E. Escalante, Ana M. Noguez, Felipe García‐Oliva, Celeste Martínez-Piedragil, Silke Cram, Luis E. Eguiarte, Valeria Souza
Software Mentions: 2
Published: about 10 years ago

10.7717/peerj.5754

Residue management alters microbial diversity and activity without affecting their community composition in black soil, Northeast China
Cited by: 10
Author(s): Song Gu, Xingjun Guo, Yuetong Cai, Zehui Zhang, Shuai Wu, Xin Li, Huihui Zhang, Wei Yang
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-021-93052-8

Exposure to (Z)-11-hexadecenal [(Z)-11-16:Ald] increases Brassica nigra susceptibility to subsequent herbivory
Cited by: 4
Author(s): Agnès Brosset, Monirul Islam, Sara Bonzano, Massimo E. Maffei, James D. Blande
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-92613-1

Historical contingency impacts on community assembly and ecosystem function in chemosynthetic marine ecosystems
Cited by: 1
Author(s): Dimitri Kalenitchenko, Erwan Péru, Pierre E. Galand
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-93725-4

Resistance to permethrin alters the gut microbiota of Aedes aegypti
Cited by: 10
Author(s): Ephantus J. Muturi, Christopher A. Dunlap, Chelsea T. Smartt, Dong Ho Shin
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-93698-4

Unpalatable plants induce a species-specific associational effect on neighboring communities
Cited by: 1
Author(s): Mohammad Bagher Erfanian, Farshid Memariani, Zohreh Atashgahi, M Mesdaghi, Maliheh Saeedi, Mojtaba Darrudi, Maliheh Hamedian, Seyyed Reza Attarzadeh Hosseini, Hamid Ejtehadi
Software Mentions: 2
Published: about 5 years ago

10.7717/peerj.3479

Alder and the Golden Fleece: high diversity of <i>Frankia</i> and ectomycorrhizal fungi revealed from <i>Alnus glutinosa</i> subsp. <i>barbata</i> roots close to a Tertiary and glacial refugium
Cited by: 12
Author(s): Mélanie Roy, A. Pozzi, Raphaëlle Gareil, Mélissande Nagati, Sophie Manzi, Imen Nouioui, Nino Sharikadze, Patricia Jargeat, Hervé Gryta, Pierre–Arthur Moreau, María P. Fernández, Monique Gardes
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-021-93859-5

Environmental DNA reveals the fine-grained and hierarchical spatial structure of kelp forest fish communities
Cited by: 18
Author(s): Thomas Lamy, Kathleen J. Pitz, Francisco P. Chávez, Christie E. Yorke, Robert J. Miller
Software Mentions: 2
Published: about 5 years ago

10.7717/peerj.2250

Flower diversity and bee reproduction in an arid ecosystem
Cited by: 6
Author(s): Jimena Dorado, Diego P. Vázquez
Software Mentions: 2
Published: about 10 years ago

10.1128/mSystems.00119-20

Continental-Scale Microbiome Study Reveals Different Environmental Characteristics Determining Microbial Richness, Composition, and Quantity in Hotel Rooms
Cited by: 16
Author(s): Fu Xi, Yanling Li, Qianqian Yuan, Gui-Hong Cai, Yiqun Deng, Xin Zhang, Dan Norbäck, Yu Sun
Software Mentions: 2
Published: about 6 years ago

10.7717/peerj.2853

Identifying zooplankton community changes between shallow and upper-mesophotic reefs on the Mesoamerican Barrier Reef, Caribbean
Cited by: 10
Author(s): Dominic A. Andradi‐Brown, Catherine E. I. Head, Dan A. Exton, Christina L. Hunt, Alicia Hendrix, Erika Gress, Alex D. Rogers
Software Mentions: 2
Published: over 9 years ago

10.1038/s41396-020-0632-4

Novel phosphate-solubilizing bacteria enhance soil phosphorus cycling following ecological restoration of land degraded by mining
Cited by: 153
Author(s): Jie-Liang Liang, Jun Liu, Pu Jia, Tong Yang, Qingwei Zeng, Sheng-Chang Zhang, Bin Liao, Wen‐Sheng Shu, Jintian Li
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2020.609950

Metagenomic Analysis of the Microbial Communities and Resistomes of Veal Calf Feces
Cited by: 8
Author(s): Debabrata Biswas, Seon Woo Kim, Ernest Hovingh, Jo Ann S. Van Kessel, Bradd J. Haley
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.695

Metabolic diversity and niche structure in sponges from the Miskito Cays, Honduras
Cited by: 26
Author(s): Christopher Freeman, Cole G. Easson, David M. Baker
Software Mentions: 2
Published: almost 12 years ago

10.7717/peerj.7669

Searching for phylogenetic patterns of Symbiodiniaceae community structure among Indo-Pacific Merulinidae corals
Cited by: 14
Author(s): Sébastien Leveque, Lutfi Afiq‐Rosli, Yin Cheong Aden Ip, Sudhanshi S. Jain, Danwei Huang
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0018520

A Snapshot of the Population Structure of Branchiostoma lanceolatum in the Racou Beach, France, during Its Spawning Season
Cited by: 14
Author(s): Yves Desdevises, Vincent Maillet, Michaël Fuentès, Héctor Escrivá
Software Mentions: 2
Published: over 15 years ago

10.7717/peerj.1936

In four shallow and mesophotic tropical reef sponges from Guam the microbial community largely depends on host identity
Cited by: 50
Author(s): Georg Steinert, Michael W. Taylor, Peter Deines, Rachel L. Simister, Nicole J. de Voogd, Michael Hoggard, Peter J. Schupp
Software Mentions: 2
Published: over 10 years ago

10.1038/s41598-021-96831-5

Spatiotemporal effects on dung beetle activities in island forests-home garden matrix in a tropical village landscape
Cited by: 3
Author(s): G. Asha, K. Manoj, P. P. Megha, Palatty Allesh Sinu
Software Mentions: 2
Published: about 5 years ago

10.7717/peerj.11231

Diversity patterns and drivers of soil microbial communities in urban and suburban park soils of Shanghai, China
Cited by: 7
Author(s): Weiwei Zhang, Jigang Han, Haibing Wu, Qicheng Zhong, Wen Liu, Shan-Wen He, Lang Zhang
Software Mentions: 2
Published: over 5 years ago

10.3390/microorganisms7100410

Temporal Dynamics in Rumen Bacterial Community Composition of Finishing Steers during an Adaptation Period of Three Months
Cited by: 22
Author(s): Qinghua Qiu, Chaoyu Gao, Zhibiao Gao, MA Rahman, Yang He, Binghai Cao, Huawei Su
Software Mentions: 2
Published: almost 7 years ago

10.7717/peerj.10905

Depression of the soil arbuscular mycorrhizal fungal community by the canopy gaps in a Japanese cedar (<i>Cryptomeria japonica</i>) plantation on Lushan Mountain, subtropical China
Cited by: 4
Author(s): Guiwu Zou, Yuanqiu Liu, Fansen Kong, Liqin Liao, Guanghua Deng, Jiang Xue, Junhuo Cai, Wei Liu
Software Mentions: 2
Published: over 5 years ago

10.1186/s40168-021-01066-1

Synergistic action of the gut microbiota in environmental RNA interference in a leaf beetle
Cited by: 27
Author(s): Letian Xu, Shijing Xu, Liuwei Sun, Yiqiu Zhang, Jing Luo, Ralph Bock, Jiang Zhang
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2018.02437

Interactive Effects of Pesticides and Nutrients on Microbial Communities Responsible of Litter Decomposition in Streams
Cited by: 16
Author(s): Florent Rossi, Stéphane Pesce, Clarisse Mallet, C. Margoum, Arnaud Chaumot, Matthieu Masson, Joan Artigas
Software Mentions: 2
Published: almost 8 years ago

10.7717/peerj.1740

Increasing land use drives changes in plant phylogenetic diversity and prevalence of specialists
Cited by: 5
Author(s): Soraya Villalobos, Jana C. Vamosi
Software Mentions: 2
Published: over 10 years ago

10.3389/fmicb.2020.00683

Impact of Salinity on the Gastrointestinal Bacterial Community of Theodoxus fluviatilis
Cited by: 12
Author(s): Carmen Kivistik, Jan Knobloch, Kairi Käiro, Helen Tammert, Veljo Kisand, Jan‐Peter Hildebrandt, Daniel P. R. Herlemann
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.4653

Soft-bottom fishes and spatial protection: findings from a temperate marine protected area
Cited by: 11
Author(s): Inês Sousa, Jorge M. S. Gonçalves, Joachim Claudet, Rui Coelho, Emanuel João Gonçalves, Karim Erzini
Software Mentions: 2
Published: over 8 years ago

10.3390/microorganisms8081242

Do Metabolomics and Taxonomic Barcode Markers Tell the Same Story about the Evolution of Saccharomyces sensu stricto Complex in Fermentative Environments?
Cited by: 3
Author(s): Luca Roscini, Angela Conti, Debora Casagrande Pierantoni, Vincent Robert, Laura Della Corte, Gianluigi Cardinali
Software Mentions: 2
Published: about 6 years ago