cran: vegan | Projects | Ecosyste.ms: Papers

10.1098/rstb.2016.0116

Interacting effects of land use and climate on rodent-borne pathogens in central Kenya
Cited by: 35
Author(s): Hillary S. Young, Douglas J. McCauley, Rodolfo Dirzo, Charles L. Nunn, Michael G. Campana, Bernard Agwanda, Erik Otárola‐Castillo, Eric R. Castillo, Robert M. Pringle, Kari E. Veblen, Daniel J. Salkeld, Kristin Stewardson, Robert C. Fleischer, Éric F. Lambin, Todd M. Palmer, Kristofer M. Helgen
Software Mentions: 2
Published: over 9 years ago

10.1098/rstb.2015.0328

Dissecting host-associated communities with DNA barcodes
Cited by: 23
Author(s): Christopher C. M. Baker, Leonora S. Bittleston, Jon G. Sanders, Naomi E. Pierce
Software Mentions: 2
Published: about 10 years ago

10.14814/phy2.13649

Fecal <i>Enterobacteriales</i> enrichment is associated with increased in vivo intestinal permeability in humans
Cited by: 24
Author(s): Christian Fischer Pedersen, Umer Zeeshan Ijaz, Edith Gallagher, Felicity Horton, Richard J. Ellis, Etana Joy Jaiyeola, Thibaut Duparc, David Russell‐Jones, Paul Hinton, Patrice D. Cani, Roberto M. La Ragione, M. Denise Robertson
Software Mentions: 2
Published: over 8 years ago

10.14814/phy2.14249

Transcriptomic and barrier responses of human airway epithelial cells exposed to cannabis smoke
Cited by: 17
Author(s): Jennifer A. Aguiar, Ryan D. Huff, Wayne Tse, Martin R. Stämpfli, Brendan J. McConkey, Andrew C. Doxey, Jeremy A. Hirota
Software Mentions: 2
Published: almost 7 years ago

10.14814/phy2.14693

Biological subphenotypes of acute respiratory distress syndrome may not reflect differences in alveolar inflammation
Cited by: 15
Author(s): Nanon F.L. Heijnen, Laura A. Hagens, Marry R. Smit, Marcus J. Schultz, Tom van der Poll, Ronny M. Schnabel, Iwan C. C. van der Horst, Robert P. Dickson, Dennis C. J. J. Bergmans, Lieuwe D. J. Bos
Software Mentions: 2
Published: over 5 years ago

10.14814/phy2.13170

Potential mechanisms of effects of serum-derived bovine immunoglobulin/protein isolate therapy in patients with diarrhea-predominant irritable bowel syndrome
Cited by: 20
Author(s): Nelson Valentin, Michael Camilleri, Paula Carlson, Sean C. Harrington, Deborah J. Eckert, Jessica O’Neill, Duane D. Burton, Jun Chen, Audrey L. Shaw, Andrés Acosta
Software Mentions: 2
Published: over 9 years ago

10.14814/phy2.14354

Exercise with food withdrawal at thermoneutrality impacts fuel use, the microbiome, AMPK phosphorylation, muscle fibers, and thyroid hormone levels in rats
Cited by: 13
Author(s): Antonia Giacco, Giuseppe delli Paoli, Roberta Simiele, Marianna Caterino, Margherita Ruoppolo, Wilhelm Bloch, Robert Kraaij, André G. Uitterlinden, Alessandra Santillo, Rosalba Senese, Federica Cioffi, Elena Silvestri, Stefania Iervolino, Assunta Lombardi, María Moreno, Fernando Goglia, Antonia Lanni, Pieter de Lange
Software Mentions: 2
Published: over 6 years ago

10.1016/j.xplc.2020.100139

Divergent patterns between phenotypic and genetic variation in Scots pine
Cited by: 18
Author(s): David G. Hall, Jenny Olsson, Zhao Wang, Johan Kroon, Ulfstand Wennström, Xiaoru Wang
Software Mentions: 2
Published: over 5 years ago

10.3390/plants9010004

Short-Term Post-Harvest Stress that Affects Profiles of Volatile Organic Compounds and Gene Expression in Rocket Salad during Early Post-Harvest Senescence
Cited by: 6
Author(s): Natasha D. Spadafora, Giacomo Cocetta, António Ferrante, Robert J. Herbert, Simone Dimitrova, Daniela Davoli, M Fernández, Valentine Patterson, Tinkara Vozel, Canesia Amarysti, Hilary J. Rogers, Carsten T. Müller
Software Mentions: 2
Published: almost 7 years ago

10.3390/plants9050625

Distribution Pattern of Gymnosperms’ Richness in Nepal: Effect of Environmental Constrains along Elevational Gradients
Cited by: 9
Author(s): Bipin Pandey, Nirdesh Nepal, Salina Tripathi, Kaiwen Pan, Mohammed A. Dakhil, Arbindra Timilsina, Meta Francis Justine, Saroj Koirala, Kamal B Nepali
Software Mentions: 2
Published: over 6 years ago

10.3390/plants10061071

Profiling of Plant Growth-Promoting Metabolites by Phosphate-Solubilizing Bacteria in Maize Rhizosphere
Cited by: 10
Author(s): Minchong Shen, Jiangang Li, Yuanhua Dong, Hong Liu, Junwei Peng, Yang Hu, Yang Sun
Software Mentions: 2
Published: over 5 years ago

10.3390/plants9111453

Permafrost Degradation Leads to Biomass and Species Richness Decreases on the Northeastern Qinghai-Tibet Plateau
Cited by: 18
Author(s): Xiaoying Jin, Huijun Jin, Xiaodong Wu, Sheng Yu, Xiaoying Li, Ruixia He, Qingfeng Wang, Johannes M. H. Knops
Software Mentions: 2
Published: almost 6 years ago

10.3390/plants10020291

Genetic and Epigenetic Changes during the Upward Expansion of Deyeuxia angustifolia Kom. in the Alpine Tundra of the Changbai Mountains, China
Cited by: 3
Author(s): Biao Ni, Jian Wei You, Jiangnan Li, Yangong Du, Wei Zhao, Xia Chen
Software Mentions: 2
Published: over 5 years ago

10.3390/plants9101404

Ailanthus altissima Forests Determine a Shift in Herbaceous Layer Richness: A Paired Comparison with Hardwood Native Forests in Sub-Mediterranean Europe
Cited by: 9
Author(s): Silvia Montecchiari, Giulio Tesei, Marina Allegrezza
Software Mentions: 2
Published: almost 6 years ago

10.3390/plants9111501

Response of Horticultural Soil Microbiota to Different Fertilization Practices
Cited by: 12
Author(s): Iratxe Zarraonaindia, Xabier Simón Martínez‐Goñi, Olaia Liñero, Marta Muñoz-Colmenero, Mikel Aguirre, David Abad, Igor Baroja-Careaga, Alberto de Diego, Jack A. Gilbert, Andone Estonba
Software Mentions: 2
Published: almost 6 years ago

10.3390/plants9121640

Structure of the Chemical and Genetic Diversity of the True Lavender over Its Natural Range
Cited by: 14
Author(s): Yolande Despinasse, Sandrine Moja, Catherine Soler, Frédéric Jullien, Bernard Pasquier, Jean‐Marie Bessière, Sylvie Baudino, Florence Nicolè
Software Mentions: 2
Published: almost 6 years ago

10.3390/plants10091867

Coupling Relationship of Leaf Economic and Hydraulic Traits of Alhagisparsifolia Shap. in a Hyper-Arid Desert Ecosystem
Cited by: 6
Author(s): Heng Yin, Akash Tariq, Bo Zhang, Guanghui Lv, Fanjiang Zeng, Corina Graciano, Mariana Santos, Zhihao Zhang, Peng Wang, Shuyong Mu
Software Mentions: 2
Published: about 5 years ago

10.3390/plants10040636

Effects of Water and Energy on Plant Diversity along the Aridity Gradient across Dryland in China
Cited by: 17
Author(s): Shuran Yao, Muhammad Adnan Akram, Weigang Hu, Yuan Sun, Youbin Sun, Yan Deng, Jinzhi Ran, Jianming Deng
Software Mentions: 2
Published: over 5 years ago

10.3390/plants8090326

Distribution and Community Assembly of Trees Along an Andean Elevational Gradient
Cited by: 10
Author(s): Samantha J. Worthy, Rosa A. Jiménez Paz, Álvaro J. Pérez, A. E. Reynolds, Jennifer Cruse‐Sanders, Renato Valencia, John A. Barone, Kevin S. Burgess
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pbio.2006842

Gut microbiota diversity across ethnicities in the United States
Cited by: 196
Author(s): Andrew Brooks, Sambhawa Priya, Ran Blekhman, Seth R. Bordenstein
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pbio.2006352

Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotrophic microbiota
Cited by: 220
Author(s): Allen Van Deynze, Pablo Zamora, Pierre‐Marc Delaux, Cristobal Heitmann, Dhileepkumar Jayaraman, Shanmugam Rajasekar, Danielle Graham, Jun Maeda, Donald J Gibson, Kevin Daniel Schwartz, Alison M. Berry, Srijak Bhatnagar, Guillaume Jospin, Aaron E. Darling, Richard Jeannotte, Javier Rodríguez López, Bart C. Weimer, Jonathan A. Eisen, Howard Shapiro, Jean‐Michel Ané, A. B. Bennett
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pgen.1007943

Marine environmental DNA biomonitoring reveals seasonal patterns in biodiversity and identifies ecosystem responses to anomalous climatic events
Cited by: 92
Author(s): Tina E. Berry, Benjamin J. Saunders, Megan L. Coghlan, Michael Stat, Simon Jarman, Anthony J. Richardson, Claire Davies, Oliver Berry, Euan S. Harvey, Michael Bunce
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pgen.1003485

The Genome Organization of Thermotoga maritima Reflects Its Lifestyle
Cited by: 44
Author(s): Haythem Latif, Joshua A. Lerman, Vasiliy A. Portnoy, Yekaterina Tarasova, Harish Nagarajan, Alexandra C. Schrimpe‐Rutledge, Richard D. Smith, Joshua N. Adkins, Dong Hoon Lee, Yu Qiu, Karsten Zengler
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pgen.1006911

Deconstructing isolation-by-distance: The genomic consequences of limited dispersal
Cited by: 86
Author(s): Stepfanie M. Aguillon, John W. Fitzpatrick, Reed Bowman, Stephan J. Schoech, Andrew G. Clark, Graham Coop, Nancy Chen
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0187461

Species-specific signatures of the microbiome from Camponotus and Colobopsis ants across developmental stages
Cited by: 34
Author(s): Manuela de Oliveira Ramalho, Odair Corrêa Bueno, Corrie S. Moreau
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0234303

Coupled fish-hydrogeomorphic responses to urbanization in streams of Columbus, Ohio, USA
Cited by: 7
Author(s): Leslie O. Rieck, Sean Sullivan
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0053516

Unveiling Distribution Patterns of Freshwater Phytoplankton by a Next Generation Sequencing Based Approach
Cited by: 108
Author(s): Alexander Eiler, Stina Drakare, Stefan Bertilsson, Jakob Pernthaler, Sari Peura, Carina Rofner, Karel Šimek, Yang Yang, Petr Znachor, Eva S. Lindström
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0112942

Müllerian Mimicry as a Result of Codivergence between Velvet Ants and Spider Wasps
Cited by: 15
Author(s): Juanita Rodríguez, James P. Pitts, Carol D. von Dohlen, Joseph S. Wilson
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0168152

Response of Bacteria Community to Long-Term Inorganic Nitrogen Application in Mulberry Field Soil
Cited by: 11
Author(s): Chengqun Yu, Xingming Hu, Ding Wen, Yong Li, Guangming Han, Chao Xiong
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0198225

Illumina sequencing analysis of the ruminal microbiota in high-yield and low-yield lactating dairy cows
Cited by: 51
Author(s): Jinjin Tong, Hua Zhang, Dongyan Yang, Yonghong Zhang, Benhai Xiong, Linshu Jiang
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0174582

Spatio-temporal variation of fish taxonomic composition in a South-East Asian flood-pulse system
Cited by: 34
Author(s): Heng Kong, Mathieu Chevalier, Pascal Laffaille, Sovan Lek
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0221770

The Pacific harbor seal gut microbiota in Mexico: Its relationship with diet and functional inferences
Cited by: 22
Author(s): Arlette Pacheco-Sandoval, Yolanda Schramm, Gisela Heckel, Elizabeth Brassea-Pérez, Marcel Martínez‐Porchas, Asunción Lago‐Lestón
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0106178

Fine-scale distribution and spatial variability of benthic invertebrate larvae in an open coastal embayment in Nova Scotia, Canada.
Cited by: 5
Author(s): Rémi M. Daigle, Anna Meta×as, Brad deYoung
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0023969

Evidence of Weak Habitat Specialisation in Microscopic Animals
Cited by: 41
Author(s): Diego Fontaneto, Martin Westberg, Joaquín Hortal
Software Mentions: 2
Published: about 15 years ago

10.1371/journal.pone.0147971

The Many Dimensions of Diet Breadth: Phytochemical, Genetic, Behavioral, and Physiological Perspectives on the Interaction between a Native Herbivore and an Exotic Host
Cited by: 26
Author(s): Joshua G. Harrison, Zachariah Gompert, James A. Fordyce, C. Alex Buerkle, Rachel Grinstead, Joshua P. Jahner, Scott Mikel, Chris C. Nice, Aldrin Santamaria, Matthew L. Forister
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0224213

Host plants influence the composition of the gut bacteria in Henosepilachna vigintioctopunctata
Cited by: 25
Author(s): Jing Lü, Wei Guo, Shimin Chen, Mujuan Guo, Bao‐Li Qiu, Chunxiao Yang, Tengxiang Lian, Huipeng Pan
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0095244

Ground Layer Plant Species Turnover and Beta Diversity in Southern-European Old-Growth Forests
Cited by: 33
Author(s): Francesco Sabatini, Sabina Burrascano, Hanna Tuomisto, C. Blasi
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0193430

Prey fish returned to Forster’s tern colonies suggest spatial and temporal differences in fish composition and availability
Cited by: 2
Author(s): Sarah H. Peterson, Joshua T. Ackerman, Collin A. Eagles‐Smith, Mark P. Herzog, C. Alex Hartman
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0099722

The Bias Associated with Amplicon Sequencing Does Not Affect the Quantitative Assessment of Bacterial Community Dynamics
Cited by: 42
Author(s): Federico M. Ibarbalz, Maidelyn Díaz Pérez, Eva Lucía Margarita Figuerola, Leonardo Erijman
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0195286

Metrics and methods for characterizing dairy farm intensification using farm survey data
Cited by: 35
Author(s): Alejandra M. Gonzalez-Mejia, David Styles, Paul N. Wilson, James Gibbons
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0206805

Interaction of land management and araucaria trees in the maintenance of landscape diversity in the highlands of southern Brazil
Cited by: 11
Author(s): Rafael Barbizan Sühs, Eduardo Luís Hettwer Giehl, Nivaldo Peroni
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0078687

Low Incidence of Spontaneous Type 1 Diabetes in Non-Obese Diabetic Mice Raised on Gluten-Free Diets Is Associated with Changes in the Intestinal Microbiome
Cited by: 105
Author(s): Eric Marietta, Andrés Gómez, Carl J. Yeoman, Ashenafi Y. Tilahun, Chad R. Clark, David Luckey, Joseph A. Murray, Bryan A. White, Yogish C. Kudva, Govindarajan Rajagopalan
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0127234

Effort versus Reward: Preparing Samples for Fungal Community Characterization in High-Throughput Sequencing Surveys of Soils
Cited by: 31
Author(s): Zewei Song, Dan Schlatter, Peter G. Kennedy, Linda L. Kinkel, H. Corby Kistler, Nhu Nguyen, Scott T. Bates
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0051962

Soil Functional Operating Range Linked to Microbial Biodiversity and Community Composition Using Denitrifiers as Model Guild
Cited by: 20
Author(s): Sara Hallin, Allana Welsh, John Stenström, Stéphanie Hallet, Karin Enwall, David Bru, Laurent Philippot
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0123943

Passive Acoustic Monitoring of the Temporal Variability of Odontocete Tonal Sounds from a Long-Term Marine Observatory
Cited by: 18
Author(s): Tzu‐Hao Lin, Hon‐Tsen Yu, Chi‐Fang Chen, Lien‐Siang Chou
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0196032

Short-term microbial effects of a large-scale mine-tailing storage facility collapse on the local natural environment
Cited by: 11
Author(s): Heath W. Garris, Susan A. Baldwin, John Taylor, David B. Gurr, Daniel R. Denesiuk, Jonathan D. Van Hamme, Lauchlan H. Fraser
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0176397

Variation of bacterial communities in water and sediments during the decomposition of Microcystis biomass
Cited by: 22
Author(s): Dayong Zhao, Xinyi Cao, Rui Huang, Jin Zeng, Qinglong L. Wu
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0244783

A decrease in taxonomic and functional diversity of dung beetles impacts the ecosystem function of manure removal in altered subtropical habitats
Cited by: 7
Author(s): Rodrigo Sarmiento-Garcés, Malva Isabel Medina Hernández
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0045071

Distance Decay of Similarity in Neotropical Diatom Communities
Cited by: 102
Author(s): Carlos E. Wetzel, Denise C. Bicudo, Luc Éctor, Eduardo A. Lobo, Janne Soininen, Victor Lemes Landeiro, Luis Maurício Bini
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pone.0184611

Long-term no-till: A major driver of fungal communities in dryland wheat cropping systems
Cited by: 54
Author(s): Dipak Sharma‐Poudyal, Daniel Schlatter, Chuntao Yin, Scot H. Hulbert, T. C. Paulitz
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0200007

Changes in rhizosphere microbial communities in potted cucumber seedlings treated with syringic acid
Cited by: 22
Author(s): Zhilin Wang, Jianhui Zhang, Fengzhi Wu, Xingang Zhou
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0150181

Actinorhizal Alder Phytostabilization Alters Microbial Community Dynamics in Gold Mine Waste Rock from Northern Quebec: A Greenhouse Study
Cited by: 20
Author(s): Katrina Callender, Suzanne Roy, Damase P. Khasa, Lyle G. Whyte, Charles W. Greer
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0148130

Spatial Distribution of Fungal Communities in an Arable Soil
Cited by: 55
Author(s): Julia Moll, Björn Hoppe, Stephan König, Tesfaye Wubet, François Buscot, Dirk Krüger
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0159396

Phylogeographic Analysis of Blastomyces dermatitidis and Blastomyces gilchristii Reveals an Association with North American Freshwater Drainage Basins
Cited by: 35
Author(s): Lisa R. McTaggart, Elizabeth M. Brown, Susan E. Richardson
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0052109

High Bee and Wasp Diversity in a Heterogeneous Tropical Farming System Compared to Protected Forest
Cited by: 26
Author(s): Christof Schüepp, Sarah Rittiner, Martin H. Entling
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0225630

Estimating the degree to which distance and temperature differences drive changes in fish community composition over time in the upper Mississippi River
Cited by: 0
Author(s): James H. Larson, Jon M. Vallazza, Brent C. Knights
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0167405

Environmental and Geographical Factors Structure Soil Microbial Diversity in New Caledonian Ultramafic Substrates: A Metagenomic Approach
Cited by: 47
Author(s): Véronique Gourmelon, Laurent Maggia, Jeff R. Powell, Sarah Gigante, Sara Hortal, Claire Gueunier, Kelly Letellier, Fabian Carriconde
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0250162

Water pre-filtration methods to improve environmental DNA detection by real-time PCR and metabarcoding
Cited by: 18
Author(s): Kazuto Takasaki, Hiroki Aihara, Toshinobu Imanaka, Takahiro Matsudaira, Keita Tsukahara, Atsuko Usui, Sora Osaki, Hideyuki Doi
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0081308

The Environment, Not Space, Dominantly Structures the Landscape Patterns of the Richness and Composition of the Tropical Understory Vegetation
Cited by: 9
Author(s): Yuehua Hu, Da-Yong Sheng, Yangzhou Xiang, Zhen Yang, Daping Xu, Ningnan Zhang, Leilei Shi
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0198537

Within-species phylogenetic relatedness of a common mycorrhizal fungus affects evenness in plant communities through effects on dominant species
Cited by: 6
Author(s): Romain Savary, Lucas Villard, Ian R. Sanders
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0050335

Bird Communities of the Arctic Shrub Tundra of Yamal: Habitat Specialists and Generalists
Cited by: 30
Author(s): Vasiliy Sokolov, Dorothée Ehrich, Nigel G. Yoccoz, Alexander Sokolov, Nicolas Lecomte
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.pone.0188461

Composition and variation of respiratory microbiota in healthy military personnel
Cited by: 16
Author(s): Jun Hang, Nela Zavaljevski, Yu Yang, Valmik Desai, Richard C. Ruck, Louis Macareo, Richard G. Jarman, Jaques Reifman, Robert A. Kuschner, Paul B. Keiser
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0242017

A comparison of two remotely operated vehicle (ROV) survey methods used to estimate fish assemblages and densities around a California oil platform
Cited by: 6
Author(s): Milton S. Love, Mary M. Nishimoto, Stanley J. Clark, Kui Li, Azivy Aziz, David Palandro
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0194171

Gut microbiota varies by opioid use, circulating leptin and oxytocin in African American men with diabetes and high burden of chronic disease
Cited by: 71
Author(s): Elena Barengolts, Stefan J. Green, Yuval Eisenberg, Arfana Akbar, Bharathi Reddivari, Brian T. Layden, Lara R. Dugas, George E. Chlipala
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0062763

Humans as Long-Distance Dispersers of Rural Plant Communities
Cited by: 38
Author(s): Alistair G. Auffret, Sara A. O. Cousins
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0178869

Low pH reduces the virulence of black band disease on Orbicella faveolata
Cited by: 12
Author(s): Erinn M. Muller, Nicole M. Leporacci, Keir J. Macartney, Alessandra G. Shea, Rachel E. Crane, Emily R. Hall, Kim B. Ritchie
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0069559

Characterization of the Upper Respiratory Tract Microbiomes of Patients with Pandemic H1N1 Influenza
Cited by: 64
Author(s): Bonnie Chaban, Arianne Albert, Matthew G. Links, Jennifer L. Gardy, Patrick Tang, Janet E. Hill
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0012946

Spatial Relationships between Polychaete Assemblages and Environmental Variables over Broad Geographical Scales
Cited by: 24
Author(s): Lisandro Benedetti‐Cecchi, Katrin Iken, Brenda Konar, Juan J. Cruz‐Motta, Ann L. Knowlton, Gerhard Pohle, Alberto Castelli, Laura Tamburello, Angela Mead, Thomas J. Trott, Patricia Miloslavich, Melisa C. Wong, Yoshihisa Shirayama, Claudio Lardicci, Gabriela Palomo, Elena Maggi
Software Mentions: 2
Published: almost 16 years ago

10.1371/journal.pone.0125844

Microbial Community in High Arsenic Shallow Groundwater Aquifers in Hetao Basin of Inner Mongolia, China
Cited by: 39
Author(s): Ping Li, Yanhong Wang, Xinyue Dai, Rui Zhang, Zhou Jiang, Dawei Jiang, Shang Wang, Hongchen Jiang, Yanxin Wang, Hailiang Dong
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0180820

Responses of molluscan communities to centuries of human impact in the northern Adriatic Sea
Cited by: 31
Author(s): Ivo Gallmetzer, Alexandra Haselmair, Adam Tomášových, Michael Stachowitsch, Martin Zuschin
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0025359

Spatial Genetic Structure of a Symbiotic Beetle-Fungal System: Toward Multi-Taxa Integrated Landscape Genetics
Cited by: 59
Author(s): Patrick M. A. James, David W. Coltman, Brent W. Murray, Richard Hamelin, Felix A. H. Sperling
Software Mentions: 2
Published: almost 15 years ago

10.1371/journal.pone.0088141

Network Analysis Reveals Ecological Links between N-Fixing Bacteria and Wood-Decaying Fungi
Cited by: 98
Author(s): Björn Hoppe, Tiemo Kahl, Peter Karasch, Tesfaye Wubet, Jürgen Bauhus, François Buscot, Dirk Krüger
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0129857

Linking GPS Telemetry Surveys and Scat Analyses Helps Explain Variability in Black Bear Foraging Strategies
Cited by: 21
Author(s): Rémi Lesmerises, Lucie Rebouillat, Christian Dussault, Martin‐Hugues St‐Laurent
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0127781

Geographic Variation in Plant Community Structure of Salt Marshes: Species, Functional and Phylogenetic Perspectives
Cited by: 7
Author(s): Hongyu Guo, Scott Chamberlain, Eran Elhaik, Inder Jalli, Alana-Rose Lynes, Laurie B. Marczak, Niv Sabath, Amy Vargas, Kazimierz Więski, Emily M. Zelig, Steven C. Pennings
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0152468

Disentangling the Role of Climate, Topography and Vegetation in Species Richness Gradients
Cited by: 60
Author(s): Mario R. Moura, Fabricio Villalobos, Gabriel C. Costa, Paulo Christiano de Anchieta Garcia
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0061088

Comparative RNA-Seq and Microarray Analysis of Gene Expression Changes in B-Cell Lymphomas of Canis familiaris
Cited by: 48
Author(s): Marie R. Mooney, Jeff Bond, Noel R. Monks, Emily Eugster, David Cherba, Pamela J. Berlinski, Steve Kamerling, Keith R. Marotti, Heather Simpson, Tony Rusk, Waibhav Tembe, Christophe Legendre, Hollie Benson, Winnie S. Liang, Craig P. Webb
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0227354

Temporal and environmental drivers of fish-community structure in tropical streams from two contrasting regions in India
Cited by: 11
Author(s): Rubina Mondal, Anuradha Bhat
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0114070

Large, Omega-3 Rich, Pelagic Diatoms under Arctic Sea Ice: Sources and Implications for Food Webs
Cited by: 22
Author(s): Steven W. Duerksen, Gregory W. Thiemann, Suzanne M. Budge, Michel Poulin, Andrea Niemi, Christine Michel
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0169916

Diversity and composition of vaginal microbiota of pregnant women at risk for transmitting Group B Streptococcus treated with intrapartum penicillin
Cited by: 18
Author(s): Luiz Fernando Würdig Roesch, Rita de Cássia dos Santos Silveira, Andrea Corso, Priscila Caroline Thiago Dobbler, Volker Mai, Bruna Schafer Rojas, Álvaro Macedo Laureano, Renato S. Procianoy
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0097214

Changes in the Lung Microbiome following Lung Transplantation Include the Emergence of Two Distinct Pseudomonas Species with Distinct Clinical Associations
Cited by: 159
Author(s): Robert P. Dickson, John R. Erb-Downward, Christine M. Freeman, Neff Walker, Brittan S. Scales, James M. Beck, Fernando J. Martínez, Jeffrey L. Curtis, Vibha N. Lama, Gary B. Huffnagle
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0175160

Nutrient enrichment is associated with altered nectar and pollen chemical composition in Succisa pratensis Moench and increased larval mortality of its pollinator Bombus terrestris L.
Cited by: 31
Author(s): Tobias Ceulemans, Eva Hulsmans, Wim Van den Ende, Olivier Honnay
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0041938

Communities of Arbuscular Mycorrhizal Fungi Detected in Forest Soil Are Spatially Heterogeneous but Do Not Vary throughout the Growing Season
Cited by: 137
Author(s): John Davison, Maarja Öpik, Martin Zobel, Martti Vasar, Madis Metsis, Mari Moora
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pone.0158897

GUTSS: An Alignment-Free Sequence Comparison Method for Use in Human Intestinal Microbiome and Fecal Microbiota Transplantation Analysis
Cited by: 9
Author(s): M. Brittnacher, Sonya L. Heltshe, Hillary S. Hayden, Matthew C. Radey, Eli Weiss, Christopher J. Damman, Timothy L. Zisman, David L. Suskind, Samuel I. Miller
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0148947

Omnivory of an Insular Lizard: Sources of Variation in the Diet of Podarcis lilfordi (Squamata, Lacertidae)
Cited by: 30
Author(s): Ana Pérez‐Cembranos, Alicia León, Valentı́n Pérez-Mellado
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0232329

Exploring the effect of plant substrates on bacterial community structure in termite fungus-combs
Cited by: 11
Author(s): Shiyou Liang, Chengpan Wang, Farhan Ahmad, Yin XueJie, Yin Hu, Jianchu Mo
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0190959

Soil microbial communities and enzyme activities in sea-buckthorn (Hippophae rhamnoides) plantation at different ages
Cited by: 29
Author(s): Miao Yang, Dan Yang, Xuan Yu
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0163930

Associations between an Invasive Plant (Taeniatherum caput-medusae, Medusahead) and Soil Microbial Communities
Cited by: 13
Author(s): Elise S. Gornish, Noah Fierer, Albert Barberán
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0127959

The Interplay between Environmental Filtering and Spatial Processes in Structuring Communities: The Case of Neotropical Snake Communities
Cited by: 12
Author(s): Hamanda B. Cavalheri, Camila Both, Marcio Roberto Martins
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0156578

Can Nocturnal Flight Calls of the Migrating Songbird, American Redstart, Encode Sexual Dimorphism and Individual Identity?
Cited by: 10
Author(s): Emily T. Griffiths, Sara Keen, Michael Lanzone, Andrew Farnsworth
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0193578

Maternal DNA lineages at the gate of Europe in the 10th century AD
Cited by: 8
Author(s): Ioana Rusu, Alessandra Modi, Stefania Vai, Elena Pilli, Cristina Mircea, Claudia Radu, Claudia Urduzia, Zeno Karl Pinter, Vitalie Bodolică, Cătălin Dobrinescu, Montserrat Hervella, Octavian Popescu, Martina Lari, David Caramelli, Beatrice Kelemen
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0178559

Distribution and diversity of aquatic macroinvertebrate assemblages in a semi-arid region earmarked for shale gas exploration (Eastern Cape Karoo, South Africa)
Cited by: 28
Author(s): Annah Mabidi, Matthew S. Bird, Renzo Perissinotto
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0103115

Microbial Diversity in Hummock and Hollow Soils of Three Wetlands on the Qinghai-Tibetan Plateau Revealed by 16S rRNA Pyrosequencing
Cited by: 54
Author(s): Yangfan Deng, Xiaoyong Cui, Marcela Hernández, Marc G. Dumont
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0237599

Characterization of an acid rock drainage microbiome and transcriptome at the Ely Copper Mine Superfund site
Cited by: 6
Author(s): Lesley-Ann Giddings, George E. Chlipala, Kevin Kunstman, Stefan J. Green, Katherine Morillo, Kieran Bhave, Holly Peterson, Heather Driscoll, Mark Maienschein‐Cline
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0153713

The Value of Long-Term Stream Invertebrate Data Collected by Citizen Scientists
Cited by: 11
Author(s): Patrick Michael Edwards
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0180260

Taxon abundance, diversity, co-occurrence and network analysis of the ruminal microbiota in response to dietary changes in dairy cows
Cited by: 65
Author(s): Ilma Tapio, Daniel Fischer, Lucía Blasco, Miika Tapio, Robert John Wallace, Ali Bayat, Laura Ventto, Minna Kahala, Enyew Negussie, Kevin J. Shingfield, Johanna Vilkki
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0222470

Investigating the dispersal of antibiotic resistance associated genes from manure application to soil and drainage waters in simulated agricultural farmland systems
Cited by: 19
Author(s): Schuyler D. Smith, Phillip Colgan, Fan Yang, Elizabeth L. Rieke, Michelle L. Soupir, Thomas B. Moorman, Heather K. Allen, Adina Howe
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0134752

Enrichment and Broad Representation of Plant Biomass-Degrading Enzymes in the Specialized Hyphal Swellings of Leucoagaricus gongylophorus, the Fungal Symbiont of Leaf-Cutter Ants
Cited by: 25
Author(s): Frank O. Aylward, Lily Khadempour, Daniel M. Tremmel, Bradon R. McDonald, Carrie Nicora, Si Wu, Ronald J. Moore, Daniel J. Orton, Matthew E. Monroe, Paul Piehowski, Samuel O. Purvine, Richard Smith, Mary Lipton, Kristin Burnum-Johnson, Cameron R. Currie
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0186125

A question of data quality—Testing pollination syndromes in Balsaminaceae
Cited by: 18
Author(s): Stefan Abrahamczyk, Sissi Lozada‐Gobilard, Markus Ackermann, Eberhard Fischer, Vera Krieger, Almut Redling, Maximilian Weigend
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0126464

Males Resemble Females: Re-Evaluating Sexual Dimorphism in Protoceratops andrewsi (Neoceratopsia, Protoceratopsidae)
Cited by: 16
Author(s): Leonardo Maiorino, Andrew A. Farke, Tassos Kotsakis, Paolo Piras
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0225464

Gut carriage of antimicrobial resistance genes among young children in urban Maputo, Mozambique: Associations with enteric pathogen carriage and environmental risk factors
Cited by: 12
Author(s): David Berendes, Jackie Knee, Trent Sumner, Drew Capone, Amanda Lai, Anna Wood, Siddhartha Patel, Rassul Nalá, Oliver Cumming, Joe Brown
Software Mentions: 2
Published: almost 7 years ago

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