cran: vegan | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2020.542220

Soil Bacterial and Fungal Richness Forecast Patterns of Early Pine Litter Decomposition
Cited by: 15
Author(s): Michaeline B. N. Albright, Renee Johansen, Jaron Thompson, Deanna Lopez, La Verne Gallegos‐Graves, Marie E. Kroeger, Andreas Runde, Rebecca C. Mueller, Alex D. Washburne, Brian Munsky, Thomas M. Yoshida, John Dunbar
Software Mentions: 3
Published: almost 6 years ago

10.3389/fmicb.2019.01666

Compositional Shifts of Bacterial Communities Associated With Pyropia yezoensis and Surrounding Seawater Co-occurring With Red Rot Disease
Cited by: 14
Author(s): Yonggang Yan, Huichao Yang, Lei Tang, Jie Li, Yunxiang Mao, Zhaolan Mo
Software Mentions: 3
Published: about 7 years ago

10.3389/fmicb.2020.586148

Changes in Activity and Community Composition Shape Bacterial Responses to Size-Fractionated Marine DOM
Cited by: 8
Author(s): Marta M. Varela, Tamara Rodríguez‐Ramos, Elisa Guerrero-Feijóo, Mar Nieto‐Cid
Software Mentions: 3
Published: almost 6 years ago

10.3389/fmicb.2020.557980

Environmental Nutrients Alter Bacterial and Fungal Gut Microbiomes in the Common Meadow Katydid, Orchelimum vulgare
Cited by: 7
Author(s): Melani K. Muratore, Yvonne Sun, Chelse M. Prather
Software Mentions: 3
Published: almost 6 years ago

10.3389/fmicb.2021.620220

Different Active Microbial Communities in Two Contrasted Subantarctic Fjords
Cited by: 1
Author(s): Claudia Maturana-Martínez, Camila Fernández, Humberto E. González, Pierre E. Galand
Software Mentions: 3
Published: about 5 years ago

10.3389/fmicb.2014.00668

Contrasting assembly processes in a bacterial metacommunity along a desiccation gradient
Cited by: 28
Author(s): Ángel Valverde, Thulani P. Makhalanyane, Don A. Cowan
Software Mentions: 3
Published: almost 12 years ago

10.3389/fmicb.2020.571159

Niche Specialization and Functional Overlap of Bamboo Leaf and Root Microbiota
Cited by: 8
Author(s): Ying Zheng, Xinchun Lin
Software Mentions: 3
Published: about 6 years ago

10.3389/fmicb.2020.605622

Pathogen Infection and Host-Resistance Interactively Affect Root-Associated Fungal Communities in Watermelon
Cited by: 8
Author(s): Lihui Xu, Mogens Nicolaisen, John Larsen, Rong Zeng, Shigang Gao, Fangyin Dai
Software Mentions: 3
Published: almost 6 years ago

10.3389/fmicb.2017.02088

Alternative Growth Promoters Modulate Broiler Gut Microbiome and Enhance Body Weight Gain
Cited by: 72
Author(s): Debabrata Biswas, Seon-Woo Kim, Bradd J. Haley, Jo Ann S. Van Kessel, Debabrata Biswas
Software Mentions: 3
Published: almost 9 years ago

10.3389/fmicb.2020.00551

Crosstalk Between Female Gonadal Hormones and Vaginal Microbiota Across Various Phases of Women’s Gynecological Lifecycle
Cited by: 51
Author(s): Harrisham Kaur, Mitali Merchant, Mohammed Monzoorul Haque, Sharmila S. Mande
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2020.571537

Ozone Decreased Enteric Methane Production by 20% in an in vitro Rumen Fermentation System
Cited by: 4
Author(s): Lucy Zhao, Eleonora Caro, Devin B. Holman, Katherine E. Gzyl, Peter J. Moate, Alex V. Chaves
Software Mentions: 3
Published: almost 6 years ago

10.3389/fmicb.2016.01231

Lichen-Associated Fungal Community in Hypogymnia hypotrypa (Parmeliaceae, Ascomycota) Affected by Geographic Distribution and Altitude
Cited by: 23
Author(s): Yanyan Wang, Yong Zheng, Xinyu Wang, Xinli Wei, Jiang-Chun Wei
Software Mentions: 3
Published: about 10 years ago

10.3389/fmicb.2016.01753

Deconstructing the Bat Skin Microbiome: Influences of the Host and the Environment
Cited by: 72
Author(s): Christine V. Avena, Laura Wegener Parfrey, Jonathan W. Leff, Holly Archer, Winifred F. Frick, Kate E. Langwig, A. Marm Kilpatrick, Karen Powers, Jeffrey T. Foster, Valerie J. McKenzie
Software Mentions: 3
Published: almost 10 years ago

10.3389/fmicb.2017.00625

Protective Effect of Carvacrol against Gut Dysbiosis and Clostridium difficile Associated Disease in a Mouse Model
Cited by: 15
Author(s): Shankumar Mooyottu, Genevieve Flock, Abhinav Upadhyay, Indu Upadhyaya, Kendra Maas, Kumar Venkitanarayanan
Software Mentions: 3
Published: over 9 years ago

10.3389/fmicb.2017.01832

Legacy Effects on the Recovery of Soil Bacterial Communities from Extreme Temperature Perturbation
Cited by: 79
Author(s): Stephanie D. Jurburg, Inês Nunes, Asker Brejnrod, Samuel Jacquiod, Anders Priemé, Søren J. Sørensen, Jan Dirk van Elsas, Joana Falcão Salles
Software Mentions: 3
Published: almost 9 years ago

10.3389/fmolb.2020.590018

Metagenomic Analysis Reveals the Distribution of Antibiotic Resistance Genes in a Large-Scale Population of Healthy Individuals and Patients With Varied Diseases
Cited by: 13
Author(s): Qinwei Qiu, Jingjing Wang, Yuhong Yan, Bhaskar Roy, Chen Yang, Xuan Shang, Tingfeng Dou, Lijuan Han
Software Mentions: 3
Published: almost 6 years ago

10.3389/fnins.2021.691244

MRI Radiomic Signature of White Matter Hyperintensities Is Associated With Clinical Phenotypes
Cited by: 9
Author(s): Martin Bretzner, Anna K. Bonkhoff, Markus D. Schirmer, Sungmin Hong, Adrian V. Dalca, Kathleen Donahue, Anne‐Katrin Giese, Mark R. Etherton, Pamela M. Rist, Marco Nardin, Rǎzvan V. Marinescu, Clinton Wang, Robert W Regenhardt, Xavier Leclerc, Renaud Lopes, Oscar Benavente, John W. Cole, Amanda Donatti, Christoph J. Griessenauer, Laura Heitsch, Lukas Holmegaard, Katarina Jood, Jordi Jiménez‐Conde, Steven J. Kittner, Robin Lemmens, Christopher Levi, Patrick F. McArdle, Caitrin W. McDonough, James F. Meschia, Chia‐Ling Phuah, Arndt Rolfs, Stefan Ropele, Jonathan Rosand, Jaume Roquer, Tatjana Rundek, Ralph L. Sacco, Reinhold Schmidt, Pankaj Sharma, Agnieszka Słowik, Alessandro Sousa, Tara M. Stanne, Daniel Strbian, Turgut Tatlısumak, Vincent Thijs, Achala Vagal, Johan Wassélius, Daniel Woo, Ona Wu, Ramin Zand, Bradford B. Worrall, Jane Maguire, Arne Lindgren, Christina Jern, Polina Golland, Grégory Kuchcinski, Natalia S. Rost
Software Mentions: 3
Published: about 5 years ago

10.3389/fnins.2021.653120

Altered Gut Microbiota in a Fragile X Syndrome Mouse Model
Cited by: 15
Author(s): Francisco Altimiras, José García, Ismael Palacios-García, Michael Hurley, Robert M. J. Deacon, Bernardo González, Patricia Cogram
Software Mentions: 3
Published: over 5 years ago

10.3389/fnins.2020.00127

Case-Control Study of the Effects of Gut Microbiota Composition on Neurotransmitter Metabolic Pathways in Children With Attention Deficit Hyperactivity Disorder
Cited by: 56
Author(s): Lin Wan, Wen-Rong Ge, Shan Zhang, Yulin Sun, Bin Wang, Guang Yang
Software Mentions: 3
Published: over 6 years ago

10.3389/fnut.2021.673316

Effect of Dietary Supplementation With Mixed Organic Acids on Immune Function, Antioxidative Characteristics, Digestive Enzymes Activity, and Intestinal Health in Broiler Chickens
Cited by: 17
Author(s): Jun Ma, Shad Mahfuz, Jian Wang
Software Mentions: 3
Published: about 5 years ago

10.3389/fnut.2021.680771

Effects of Probiotic Bacteria Lactobacillaceae on the Gut Microbiota in Children With Celiac Disease Autoimmunity: A Placebo-Controlled and Randomized Clinical Trial
Cited by: 8
Author(s): Elin Oscarsson, Åsa Håkansson, Carin Andrén Aronsson, Göran Molin, Daniel Agardh
Software Mentions: 3
Published: about 5 years ago

10.3389/fnut.2021.702085

Changes in Intestinal Flora Structure and Metabolites Are Associated With Myocardial Fibrosis in Patients With Persistent Atrial Fibrillation
Cited by: 4
Author(s): Langsha Liu, Juan Su, Rui Li, Fanyan Luo
Software Mentions: 3
Published: about 5 years ago

10.3389/fonc.2020.01029

Abnormal Food Timing Promotes Alcohol-Associated Dysbiosis and Colon Carcinogenesis Pathways
Cited by: 5
Author(s): Faraz Bishehsari, Shirin Moossavi, Phillip A. Engen, Xiaohan Liu, Yue Zhang
Software Mentions: 3
Published: about 6 years ago

10.3389/fped.2019.00394

Distinct Gut Microbiota Composition and Functional Category in Children With Cerebral Palsy and Epilepsy
Cited by: 36
Author(s): Chen Huang, Yinhu Li, Xin Feng, Dongfang Li, Xiuyun Liu, Qiuxing Ouyang, Wenkui Dai, Genfeng Wu, Qian Zhou, Peiqin Wang, Ke Zhou, Ximing Xu, Shuai Cheng Li, Yuanping Peng
Software Mentions: 3
Published: almost 7 years ago

10.3389/fphys.2021.702864

The Marine Gastropod Crepidula fornicata Remains Resilient to Ocean Acidification Across Two Life History Stages
Cited by: 4
Author(s): Christopher L Reyes-Giler, Brooke E. Benson, Matthew Levy, Xüqing Chen, Anthony Pires, Jan A. Pechenik, Sarah W. Davies
Software Mentions: 3
Published: about 5 years ago

10.3389/fphys.2021.645212

Exploration of Crucial Mediators for Carotid Atherosclerosis Pathogenesis Through Integration of Microbiome, Metabolome, and Transcriptome
Cited by: 9
Author(s): Lei Ji, Siliang Chen, Guangchao Gu, Jiawei Zhou, Wei Wang, Jinrui Ren, Jianhuang Wu, Dan Yang, Yuehong Zheng
Software Mentions: 3
Published: over 5 years ago

10.3389/fphys.2019.01635

Fermented Animal Source Protein as Substitution of Fishmeal on Intestinal Microbiota, Immune-Related Cytokines and Resistance to Vibrio mimicus in Freshwater Crayfish (Cherax cainii)
Cited by: 20
Author(s): Muhammad A.B. Siddik, Ravi Fotedar, Reaz Chaklader, Javed Foysal, Ashfaqun Nahar, Janet Howieson
Software Mentions: 3
Published: over 6 years ago

10.3389/fphys.2020.00959

Effects of Six Sequential Charged Particle Beams on Behavioral and Cognitive Performance in B6D2F1 Female and Male Mice
Cited by: 21
Author(s): Jacob Raber, Andrea Fuentes Anaya, Eileen Ruth S. Torres, Joanne Lee, Sydney Weber Boutros, Dmytro Grygoryev, Austin Hammer, Kristin D. Kasschau, Thomas J. Sharpton, Mitchell S. Turker, Amy Kronenberg
Software Mentions: 3
Published: about 6 years ago

10.3389/fpls.2020.00735

The Leaf Economics Spectrum Constrains Phenotypic Plasticity Across a Light Gradient
Cited by: 11
Author(s): Xiaoping Chen, Jun Sun, Mantang Wang, Min Lyu, Karl J. Niklas, Sean T. Michaletz, Quanlin Zhong, Dongliang Cheng
Software Mentions: 3
Published: over 6 years ago

10.3389/fpls.2020.539584

Assessing the Effectiveness of in-situ Active Warming Combined With Open Top Chambers to Study Plant Responses to Climate Change
Cited by: 6
Author(s): Esther R. Frei, Luc Schnell, Yann Vitasse, Thomas Wohlgemuth, Barbara Moser
Software Mentions: 3
Published: almost 6 years ago

10.3389/fpsyg.2016.00612

Relations between Spatial Distribution, Social Affiliations and Dominance Hierarchy in a Semi-Free Mandrill Population
Cited by: 12
Author(s): Alexandre Naud, Eloise Chailleux, Yan Kestens, Céline Bret, Dominic Desjardins, Odile Petit, Barthélémy Ngoubangoye, Cédric Sueur
Software Mentions: 3
Published: over 10 years ago

10.3389/fpubh.2020.584953

Alterations in the Gut Microbiota of Zebrafish (Danio rerio) in Response to Water-Soluble Crude Oil Components and Its Mixture With a Chemical Dispersant
Cited by: 9
Author(s): Carlos Eduardo González-Penagos, Jesús Alejandro Zamora‐Briseño, Daniel Cerqueda‐García, Mónica Améndola-Pimenta, Juan Antonio Pérez-Vega, Emanuel Hernández-Nuñéz, Rossanna Rodríguez-Canul
Software Mentions: 3
Published: almost 6 years ago

10.3389/fvets.2020.583715

Proximity Interactions in a Permanently Housed Dairy Herd: Network Structure, Consistency, and Individual Differences
Cited by: 15
Author(s): Kareemah Chopra, Holly R. Hodges, Z. E. Barker, Jorge A. Vázquez Diosdado, Jonathan Amory, Tom C. Cameron, Darren P. Croft, Nick Bell, Edward A. Codling
Software Mentions: 3
Published: almost 6 years ago

10.3389/fvets.2016.00011

Spatial and Temporal Changes in the Broiler Chicken Cecal and Fecal Microbiomes and Correlations of Bacterial Taxa with Cytokine Gene Expression
Cited by: 148
Author(s): Brian B. Oakley, Michael H. Kogut
Software Mentions: 3
Published: over 10 years ago

10.3389/fvets.2021.692521

Oral Vaccination Reduces the Effects of Lawsonia intracellularis Challenge on the Swine Small and Large Intestine Microbiome
Cited by: 2
Author(s): Fernando Leite, Brittanie Winfield, Elizabeth A. Miller, Bonnie Weber, Timothy J. Johnson, Fred Sylvia, Erika Vasquez, Fábio A. Vannucci, Dana Beckler, Richard E. Isaacson
Software Mentions: 3
Published: about 5 years ago

10.1186/s12983-017-0238-5

Differences in neurochemical profiles of two gadid species under ocean warming and acidification
Cited by: 18
Author(s): Matthias Schmidt, Heidrun Sigrid Windisch, Kai‐Uwe Ludwichowski, Sean Lando Levin Seegert, Hans‐Otto Pörtner, Daniela Storch, Christian Bock
Software Mentions: 3
Published: almost 9 years ago

10.1534/g3.119.400758

Prevalence and Implications of Contamination in Public Genomic Resources: A Case Study of 43 Reference Arthropod Assemblies
Cited by: 20
Author(s): Clémentine François, Faustine Durand, Emeric Figuet, Nicolas Galtier
Software Mentions: 3
Published: over 6 years ago

10.3390/genes9080407

Seasonal and Sexual Differences in the Microbiota of the Hoopoe Uropygial Secretion
Cited by: 10
Author(s): Sonia M. Rodríguez‐Ruano, Manuel Martín‐Vivaldi, Juan Manuel Peralta‐Sánchez, Ana B. García-Martín, Ángela Martínez-García, Juan José Soler, Eva Valdivia, Manuel Martínez‐Bueno
Software Mentions: 3
Published: about 8 years ago

10.3390/genes9120599

What Is the Giant Wall Gecko Having for Dinner? Conservation Genetics for Guiding Reserve Management in Cabo Verde
Cited by: 19
Author(s): Catarina J. Pinho, Bárbara Santos, Vanessa A. Mata, Mariana Seguro, Maria M. Romeiras, Ricardo J. Lopes, Raquel Vasconcelos
Software Mentions: 3
Published: almost 8 years ago

10.3390/genes11080904

The Gut Microbiota Profile in Children with Prader–Willi Syndrome
Cited by: 17
Author(s): Ye Peng, Qiming Tan, Shima Afhami, Edward C. Deehan, Suisha Liang, Marie G. Gantz, Lucila Triador, Karen Madsen, Jens Walter, Hein Min Tun, Andrea M. Haqq
Software Mentions: 3
Published: about 6 years ago

10.1186/gb-2013-14-1-r4

Inflammation-associated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice
Cited by: 354
Author(s): Falk Hildebrand, Thi Loan Anh Nguyen, Brigitta M. N. Brinkman, Roberto Garcia Yunta, Bénédicte Cauwe, Peter Vandenabeele, Adrian Liston, Jeroen Raes
Software Mentions: 3
Published: over 13 years ago

10.1186/s13059-015-0712-3

Barley landraces are characterized by geographically heterogeneous genomic origins
Cited by: 116
Author(s): Ana M. Poets, Zhou Fang, Michael T. Clegg, Peter L. Morrell
Software Mentions: 3
Published: about 11 years ago

10.1186/s13059-017-1194-2

Relationships between gut microbiota, plasma metabolites, and metabolic syndrome traits in the METSIM cohort
Cited by: 222
Author(s): Elin Org, Yuna Blum, Silva Kasela, Margarete Mehrabian, Johanna Kuusisto, Antti J. Kangas, Pasi Soininen, Zeneng Wang, Mika Ala‐Korpela, Stanley L. Hazen, Markku Laakso, Aldons J. Lusis
Software Mentions: 3
Published: over 9 years ago

10.1186/s13059-019-1773-5

MicroPro: using metagenomic unmapped reads to provide insights into human microbiota and disease associations
Cited by: 24
Author(s): Zifan Zhu, Jie Ren, Sonia Michail, Fengzhu Sun
Software Mentions: 3
Published: about 7 years ago

10.1186/s13059-019-1807-z

Convergence of human and Old World monkey gut microbiomes demonstrates the importance of human ecology over phylogeny
Cited by: 49
Author(s): Katherine R. Amato, Elizabeth K. Mallott, Daniel McDonald, Nathaniel J. Dominy, Tony L. Goldberg, Joanna E. Lambert, Larissa Swedell, Jessica L. Metcalf, Andrés Gómez, Gillian A. O. Britton, Rebecca M. Stumpf, Steven R. Leigh, Rob Knight
Software Mentions: 3
Published: almost 7 years ago

10.1186/s13073-020-00758-x

High-resolution temporal profiling of the human gut microbiome reveals consistent and cascading alterations in response to dietary glycans
Cited by: 18
Author(s): Richard Creswell, Jie Tan, Jonathan W. Leff, Brandon Brooks, Michael A. Mahowald, Ruth Thieroff-Ekerdt, Georg K. Gerber
Software Mentions: 3
Published: about 6 years ago

10.1186/s13073-020-00796-5

Integrated analysis of microbiome and host transcriptome reveals correlations between gut microbiota and clinical outcomes in HBV-related hepatocellular carcinoma
Cited by: 73
Author(s): Hechen Huang, Zhigang Ren, Xingxing Gao, Xiaoyi Hu, Yuan Zhou, Jianwen Jiang, Haifeng Lü, Shengyong Yin, Junfang Ji, Lin Zhou, Shusen Zheng
Software Mentions: 3
Published: almost 6 years ago

10.1186/s13742-015-0086-1

Evaluating a multigene environmental DNA approach for biodiversity assessment
Cited by: 118
Author(s): Alexei J. Drummond, Richard D. Newcomb, Thomas R. Buckley, Donghua Xie, Andrew Dopheide, Benjamin C. M. Potter, Joseph Heled, Howard A. Ross, Leah Tooman, Stefanie Grosser, Duckchul Park, Nicholas J. Demetras, Mark I. Stevens, James C. Russell, Sandra Anderson, Anna Carter, Nicola J. Nelson
Software Mentions: 3
Published: almost 11 years ago

10.1093/gigascience/giz058

Disordered gut microbiota and alterations in metabolic patterns are associated with atrial fibrillation
Cited by: 103
Author(s): Kun Zuo, Jing Li, Kuibao Li, Chaowei Hu, Yuanfeng Gao, Mulei Chen, Roumu Hu, Ye Liu, Hongjie Chi, Hongjiang Wang, Yanwen Qin, Xiaoyan Liu, Shichao Li, Jun Cai, Jiu-Chang Zhong, Xinchun Yang
Software Mentions: 3
Published: over 7 years ago

10.1136/gutjnl-2019-320430

Western-type diet influences mortality from necrotising pancreatitis and demonstrates a central role for butyrate
Cited by: 57
Author(s): Fons F van den Berg, Demi van Dalen, Sanjiv Hyoju, Hjalmar C. van Santvoort, Marc G. Besselink, W. Joost Wiersinga, Olga Zaborina, Marja A. Boermeester, John C. Alverdy
Software Mentions: 3
Published: about 6 years ago

10.1080/19490976.2020.1788898

TH1 cell-inducing Escherichia coli strain identified from the small intestinal mucosa of patients with Crohn’s disease
Cited by: 35
Author(s): Shiho Nagayama, Tomonori Yano, Koji Atarashi, Takeshi Tanoue, Mariko Sekiya, Yasutoshi Kobayashi, Hirotsugu Sakamoto, Kouichi Miura, Keijiro Sunada, Takaaki Kawaguchi, Satoru Morita, Kayoko Sugita, Seiko Narushima, Nicolas Barnich, Jun Isayama, Yuko Kiridooshi, Atsushi Shiota, Wataru Suda, Masahira Hattori, Hironori Yamamoto, Kenya Honda
Software Mentions: 3
Published: about 6 years ago

10.1080/19490976.2020.1854639

Personalized B cell response to the Lactobacillus rhamnosus GG probiotic in healthy human subjects: a randomized trial
Cited by: 4
Author(s): Jette Bornholdt, Christa Broholm, Yun Chen, Alfredo Rago, Stine Sloth, Jakob Hendel, Cathrine Melsæther, Christina V Müller, Mads Eggert Nielsen, Jesper A.B. Strickertsson, Lars H. Engelholm, Kristoffer Vitting-Seerup, Kim B. Jensen, Adam Baker, Albin Sandelin
Software Mentions: 3
Published: almost 6 years ago

10.1080/19490976.2021.1946366

Alterations in microbiota and their metabolites are associated with beneficial effects of bile acid sequestrant on icteric primary biliary Cholangitis
Cited by: 23
Author(s): Bo Li, Jun Zhang, Yong Chen, Qixia Wang, Yan Li, Rui Wang, Yiran Wei, Zhengrui You, Yikang Li, Qi Miao, Xiao Xiao, Min Lian, Weihua Chen, Dekai Qiu, Jing‐Yuan Fang, M. Eric Gershwin, Ruqi Tang, Xiong Ma
Software Mentions: 3
Published: over 5 years ago

10.1080/19490976.2021.1953246

Multi-targeted properties of the probiotic saccharomyces cerevisiae CNCM I-3856 against enterotoxigenic escherichia coli (ETEC) H10407 pathogenesis across human gut models
Cited by: 11
Author(s): Charlène Roussel, Kim De Paepe, Wessam Galia, Jana De Bodt, Sandrine Chalancon, Sylvain Denis, Françoise Leriche, Pascal Vandekerkove, Nathalie Ballet, Stéphanie Blanquet-Diot, Tom Van de Wiele
Software Mentions: 3
Published: over 5 years ago

10.1038/srep12731

Local-scale Partitioning of Functional and Phylogenetic Beta Diversity in a Tropical Tree Assemblage
Cited by: 35
Author(s): Jie Yang, Nathan G. Swenson, Guocheng Zhang, Xiuqin Ci, Min Cao, Liqing Sha, Jie Li, J. W. Ferry Slik, Luxiang Lin
Software Mentions: 3
Published: about 11 years ago

10.1038/srep12978

From lithotroph- to organotroph-dominant: directional shift of microbial community in sulphidic tailings during phytostabilization
Cited by: 42
Author(s): Xiaofang Li, Philip L. Bond, Joy D. Van Nostrand, Jizhong Zhou, Longbin Huang
Software Mentions: 3
Published: about 11 years ago

10.1038/srep13185

Co-extinction in a host-parasite network: identifying key hosts for network stability
Cited by: 39
Author(s): Tad Dallas, E. A. Cornelius
Software Mentions: 3
Published: about 11 years ago

10.1038/srep15274

Evidence of bacterioplankton community adaptation in response to long-term mariculture disturbance
Cited by: 39
Author(s): Jinbo Xiong, Heping Chen, C. Hu, Xiansen Ye, Dingjiang Kong, Demin Zhang
Software Mentions: 3
Published: almost 11 years ago

10.1038/srep10540

Fractal features of soil particle size distribution in newly formed wetlands in the Yellow River Delta
Cited by: 29
Author(s): Junbao Yu, Xiaofei Lv, Ben Ma, Huifeng Wu, Siyao Du, Mo Zhou, Yanming Yang, Guoqi Han
Software Mentions: 3
Published: over 11 years ago

10.1038/srep17141

Preterm gut microbiota and metabolome following discharge from intensive care
Cited by: 36
Author(s): Christopher J. Stewart, Tom Skeath, Andrew Nelson, Sara Johansson Fernstad, Emma C. L. Marrs, John D. Perry, Stephen Cummings, Janet Berrington, Nicholas D. Embleton
Software Mentions: 3
Published: almost 11 years ago

10.1038/srep18563

Gut bacterial diversity of the tribes of India and comparison with the worldwide data
Cited by: 106
Author(s): Madhusmita Dehingia, Kanchal Thangjam devi, Narayan Chandra Talukdar, Rupjyoti Talukdar, Nageshwar Reddy, Sharmila S. Mande, Manab Deka, Mojibur R. Khan
Software Mentions: 3
Published: over 10 years ago

10.1038/srep19706

Distribution of vascular epiphytes along a tropical elevational gradient: disentangling abiotic and biotic determinants
Cited by: 48
Author(s): Yi Ding, Guangfu Liu, Jian Zhang, Xinghui Lu, Jihong Huang
Software Mentions: 3
Published: over 10 years ago

10.1038/srep22525

Integrated metabolomics and metagenomics analysis of plasma and urine identified microbial metabolites associated with coronary heart disease
Cited by: 103
Author(s): Qiang Feng, Zhipeng Liu, Shilong Zhong, Ruijun Li, Huihua Xia, Zhuye Jie, Bo Wen, Xiaomin Chen, Wei Yan, Yanqun Fan, Zhenyu Guo, Nan Meng, Jiyan Chen, Yu Xin, Zhiwei Zhang, Karsten Kristiansen, Jun Wang, Xun Xu, Kunlun He, Guanglei Li
Software Mentions: 3
Published: over 10 years ago

10.1038/srep24336

Ectomycorrhizal fungal communities associated with Populus simonii and Pinus tabuliformis in the hilly-gully region of the Loess Plateau, China
Cited by: 30
Author(s): Dongfeng Long, Jianjun Li, Qisheng Han, Xiaobing Wang, Jian Huang
Software Mentions: 3
Published: over 10 years ago

10.1038/srep25712

Habitat heterogeneity and connectivity shape microbial communities in South American peatlands
Cited by: 27
Author(s): Felix Oloo, Ángel Valverde, María Victoria Quiroga, Surendra Vikram, Don A. Cowan, Gabriela Mataloni
Software Mentions: 3
Published: over 10 years ago

10.1038/srep26752

Weight gain in anorexia nervosa does not ameliorate the faecal microbiota, branched chain fatty acid profiles and gastrointestinal complaints
Cited by: 212
Author(s): Isabelle Mack, Ulrich Cuntz, Claudia Grämer, Sabrina Niedermaier, Charlotte Pohl, Andreas Schwiertz, Kurt Zimmermann, Stephan Zipfel, Paul Enck, John Penders
Software Mentions: 3
Published: over 10 years ago

10.1038/srep29168

Landscape determinants of fine-scale genetic structure of a small rodent in a heterogeneous landscape (Hluhluwe-iMfolozi Park, South Africa)
Cited by: 18
Author(s): Isa‐Rita M. Russo, Catherine L. Sole, Mario Barbato, Ullrich von Bramann, Michael William Bruford
Software Mentions: 3
Published: about 10 years ago

10.1038/srep32826

Fecal metabolome of the Hadza hunter-gatherers: a host-microbiome integrative view
Cited by: 64
Author(s): Silvia Turroni, Jessica Fiori, Simone Rampelli, Stephanie L. Schnorr, Clarissa Consolandi, Monica Barone, Elena Biagi, Flaminia Fanelli, Marco Mezzullo, Alyssa N. Crittenden, Amanda G. Henry, Patrizia Brigidi, Marco Candela
Software Mentions: 3
Published: about 10 years ago

10.1038/srep35461

Sex Change in Clownfish: Molecular Insights from Transcriptome Analysis
Cited by: 56
Author(s): Laura Casas, Fran Saborido-Rey, Tae Woo Ryu, Craig Michell, Timothy Ravasi, Xabier Irigoien
Software Mentions: 3
Published: almost 10 years ago

10.1038/srep35926

Disentangling the drivers of taxonomic and phylogenetic beta diversities in disturbed and undisturbed subtropical forests
Cited by: 12
Author(s): Jinliang Liu, Hong Qian, Yi Jin, Chuping Wu, Jianhua Chen, Shu Yu, Xiaofeng Wei, Xiao‐Feng Jin, Jiajia Li, Mingjian Yu
Software Mentions: 3
Published: almost 10 years ago

10.1038/srep34668

Pre- and post-weaning diet alters the faecal metagenome in the cat with differences in vitamin and carbohydrate metabolism gene abundances
Cited by: 22
Author(s): Wayne Young, Christina D. Moon, David G. Thomas, Nick Cave, Emma N. Bermingham
Software Mentions: 3
Published: almost 10 years ago

10.1038/srep41502

Conversion from long-term cultivated wheat field to Jerusalem artichoke plantation changed soil fungal communities
Cited by: 8
Author(s): Xingang Zhou, Jianhui Zhang, Danmei Gao, Huan Gao, Meiyu Guo, Li Li, Zhao MengLiang, Fengzhi Wu
Software Mentions: 3
Published: over 9 years ago

10.1038/srep41801

Foliar fungi of Betula pendula: impact of tree species mixtures and assessment methods
Cited by: 26
Author(s): Diem Nguyen, Johanna Boberg, Michelle Cleary, Helge Bruelheide, Lydia Hönig, Julia Koricheva, Jan Stenlid
Software Mentions: 3
Published: over 9 years ago

10.1038/srep42625

The interaction between the proliferating macroalga Asparagopsis taxiformis and the coral Astroides calycularis induces changes in microbiome and metabolomic fingerprints
Cited by: 23
Author(s): Stéphane Greff, Tânia Aires, Ester Á. Serrão, Aschwin H. Engelen, Olivier P. Thomas, Thierry Pérez
Software Mentions: 3
Published: over 9 years ago

10.1038/srep45691

Autogenic succession and deterministic recovery following disturbance in soil bacterial communities
Cited by: 63
Author(s): Stephanie D. Jurburg, Inês Nunes, James C. Stegen, Xavier Le Roux, Anders Priemé, Søren J. Sørensen, Joana Falcão Salles
Software Mentions: 3
Published: over 9 years ago

10.1038/srep46323

Lock-picks: fungal infection facilitates the intrusion of strangers into ant colonies
Cited by: 27
Author(s): Enikő Csata, Natalia Timuş, Magdalena Witek, Luca Pietro Casacci, Christophe Lucas, Anne‐Geneviève Bagnères, Anna Sztencel-Jabłonka, Francesca Barbero, Simona Bonelli, László Rákosy, Bálint Markó
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-018-26641-9

Exploring the diversity-stability paradigm using sponge microbial communities
Cited by: 36
Author(s): Bettina Glasl, Caitlin E. Smith, David G. Bourne, Nicole S. Webster
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-018-27325-0

Investigating Holocene human population history in North Asia using ancient mitogenomes
Cited by: 13
Author(s): Gülşah Merve Kılınç, Natalija Kashuba, Reyhan Yaka, Arev Pelin Sümer, Eren Yüncü, Dmitrij Shergin, Grigorij Leonidovich Ivanov, Dmitrii Kichigin, Kiunnei A. Pestereva, D.P. Volkov, Pavel V. Mandryka, Artur Kharinskii, А. Тишкин, Evgenij Ineshin, Evgeniy Kovychev, А. Д. Степанов, Aanatolij Alekseev, Svetlana Aleksandrovna Fedoseeva, Mehmet Somel, Mattias Jakobsson, Maja Krzewińska, Jan Storå, Anders Götherström
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-018-27705-6

Need for focus on microbial species following ice melt and changing freshwater regimes in a Janus Arctic Gateway
Cited by: 17
Author(s): Nathalie Joli, Michel Gosselin, Mathieu Ardyna, Marcel Babin, Deo Florence L. Onda, Jean‐Éric Tremblay, Connie Lovejoy
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-018-27923-y

Effects of a vegetable-eel-earthworm integrated planting and breeding system on bacterial community structure in vegetable fields
Cited by: 4
Author(s): Xianqing Zheng, Wenzhen Lv, Ke Song, Shuangxi Li, Hanlin Zhang, Naling Bai, Juanqin Zhang
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-018-28424-8

Environmental DNA reveals quantitative patterns of fish biodiversity in large rivers despite its downstream transportation
Cited by: 223
Author(s): Didier Pont, Mathieu Rocle, Alice Valentini, Raphaël Civade, Pauline Jean, Anthony Maire, Nicolas Roset, Schabuss Michael, Zornig Horst, Tony Déjean
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-018-28905-w

Unique subgingival microbiota associated with periodontitis in cirrhosis patients
Cited by: 24
Author(s): A. S. Jensen, Lea Ladegaard Grønkjær, Palle Holmstrup, Hendrik Vilstrup, Mogens Kilian
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-018-29307-8

Mineralogical and textural characteristics of nest building geomaterials used by three sympatric mud-nesting hirundine species
Cited by: 9
Author(s): Dimitrios Papoulis, Olga Tzortzakaki, Pavlos Avramidis, Panagiotis Mentis, Paraskevi Lampropoulou, George Iliopoulos
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-018-29730-x

Types of tobacco consumption and the oral microbiome in the United Arab Emirates Healthy Future (UAEHFS) Pilot Study
Cited by: 39
Author(s): Yvonne Vallès, Claire K. Inman, Brandilyn A. Peters, Raghib Ali, Laila Abdel Wareth, Abdishakur Abdulle, Habiba Alsafar, Fatme Al Anouti, Ayesha S. Al Dhaheri, Divya Galani, Muna Abdalla Mohamed Haji, Aisha Al Hamiz, Ayesha Al Hosani, Mohammed Al-Houqani, Abdulla Al Junaibi, Marina Kazim, Tomas Kirchhoff, Wael Al Mahmeed, Fatma Al-Maskari, Abdullah Alnaeemi, Naima Oumeziane, Ravichandran Ramasamy, Ann Marie Schmidt, Michael Weitzman, Eiman Al Zaabi, Scott E. Sherman, Richard B. Hayes, Jiyoung Ahn
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-018-30179-1

Sample size effects on the assessment of eukaryotic diversity and community structure in aquatic sediments using high-throughput sequencing
Cited by: 40
Author(s): Francisco J. A. Nascimento, Delphine Lallias, Holly M. Bik, Simon Creer
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-018-29920-7

Stationary and portable sequencing-based approaches for tracing wastewater contamination in urban stormwater systems
Cited by: 23
Author(s): Yue Hu, Nelson Ndegwa, Johannes Alneberg, Sebastian Johansson, Jürg Brendan Logue, Mikael Huss, Max Käller, Joakim Lundeberg, Jens Fagerberg, Anders F. Andersson
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-018-30735-9

Changes in the gut microbiota composition during pregnancy in patients with gestational diabetes mellitus (GDM)
Cited by: 137
Author(s): Ilario Ferrocino, Valentina Ponzo, Roberto Gambino, Adriana Zarovska, Filomena Leone, C Monzeglio, Ilaria Goitre, Rosalba Rosato, Angelo Romano, Giorgio Grassi, Fabio Broglio, Maurizio Cassader, Luca Simone Cocolin, Simona Bo
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-018-30932-6

Characterization of bacterial microbiota compositions along the intestinal tract in pigs and their interactions and functions
Cited by: 110
Author(s): Daniel Crespo-Piazuelo, Jordi Estellé, Manuel Revilla, Lourdes Criado-Mesas, Yuliaxis Ramayo-Caldas, Cristina Óvilo, Ana Fernández, María Ballester, Josep María Folch
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-018-31823-6

Low-dose calcipotriol can elicit wound closure, anti-microbial, and anti-neoplastic effects in epidermolysis bullosa keratinocytes
Cited by: 23
Author(s): Christina Guttmann‐Gruber, B. Tockner, Cornelia Scharler, Clemens Hüttner, John E.A. Common, A.A.O. Tay, Simon Denil, Alfred Klausegger, Andrea Trost, Jenny Breitenbach, Peter Schnitzhofer, Peter Hofbauer, Martin Wolkersdorfer, Anja Diem, Martin Laimer, Dirk Strunk, Johann Bauer, Julia Reichelt, Roland Lang, Josefina Piñón Hofbauer
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-018-32037-6

Fucosylated oligosaccharides in mother’s milk alleviate the effects of caesarean birth on infant gut microbiota
Cited by: 84
Author(s): Katri Korpela, Anne Salonen, Brandon Hickman, Clemens Kunz, Norbert Sprenger, Kaarina Kukkonen, Erkki Savilahti, Mikael Kuitunen, Willem M. de Vos
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-018-32514-y

Agricultural landscapes and the Loire River influence the genetic structure of the marbled newt in Western France
Cited by: 5
Author(s): Jean‐Marc Costanzi, Pascal Mège, Alexandre Boissinot, Françis Isselin-Nondedeu, Sarah M. Guérin, Olivier Lourdais, Audrey Trochet, Quentin Le Petitcorps, Agathe Legrand, François Varenne, Pierre Antoine Grillet, Sophie Morin-Pinaud, Damien Picard
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41598-018-32529-5

Community Structure, Dynamics and Interactions of Bacteria, Archaea and Fungi in Subtropical Coastal Wetland Sediments
Cited by: 60
Author(s): Man Kit Cheung, Carmen Wong, Ka Hou Chu, Hoi Shan Kwan
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41598-018-33545-1

Showcasing the role of seawater in bacteria recruitment and microbiome stability in sponges
Cited by: 33
Author(s): Marta Turon, Joan Cáliz, Leire Garate, Emilio O. Casamayor, María Jesús Uriz
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41598-018-33593-7

Genomics of experimental adaptation of Staphylococcus aureus to a natural combination of insect antimicrobial peptides
Cited by: 22
Author(s): Olga Makarova, Paul R. Johnston, Alexandro Rodríguez‐Rojas, Baydaa El Shazely, Javier Moreno-Morales, Jens Rolff
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41598-018-33750-y

Association of cervical microbial community with persistence, clearance and negativity of Human Papillomavirus in Korean women: a longitudinal study
Cited by: 30
Author(s): Selvaraj Arokiyaraj, Sang Soo Seo, Minji Kwon, Jae Kwan Lee, Mi Kyung Kim
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41598-018-35550-w

Temporal and spatial patterns of mitochondrial haplotype and species distributions in Siberian larches inferred from ancient environmental DNA and modeling
Cited by: 23
Author(s): Laura S. Epp, Stefan Kruse, Nadja J. Kath, Kathleen R. Stoof‐Leichsenring, Ralph Tiedemann, Ludmila A Pestryakova, Ulrike Herzschuh
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41598-018-36364-6

Impact of CFTR modulation with Ivacaftor on Gut Microbiota and Intestinal Inflammation
Cited by: 88
Author(s): Chee Y. Ooi, Saad Syed, Laura Rossi, Millie Garg, Bronwen Needham, Julie Avolio, Kelsey Young, Michael G. Surette, Tanja Gonska
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41598-018-36315-1

Differences in collembola species assemblages (Arthropoda) between spoil tips and surrounding environments are dependent on vegetation development
Cited by: 9
Author(s): Benoît Vanhée, Cédric Devigne
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-018-36867-2

Soil parameters, land use, and geographical distance drive soil bacterial communities along a European transect
Cited by: 50
Author(s): Pierre Plassart, Nicolas Chemidlin Prévost-Bouré, Stéphane Uroz, Samuel Dequiedt, D. Stone, Rachel Creamer, Robert I. Griffiths, Mark Bailey, Lionel Ranjard, Philippe Lemanceau
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-018-37467-w

Association of prevalent vaginal microbiome of mother with occurrence of type I diabetes in child
Cited by: 5
Author(s): Mysore V. Tejesvi, Ritva Nissi, Karita Saravesi, Anna Maria Pirttilä, Annamari Markkola, Anne Talvensaari-Mattila, Anna Liisa Ruotsalainen
Software Mentions: 3
Published: over 7 years ago

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Papers Mentioning vegan 6,903