Projects: cran: vegan
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/vegan
Community Ecology Package
87 versions
Latest release: almost 4 years ago
202 dependent packages
91,351 downloads last month
Enhanced Analysis
Educational Contributors:
ghanni@upenn.edu
pminchi@siue.edu
hezibuba@mail.tau.ac.il
Repository Activity:
Repository Owner:
vegandevs (organization)
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+60
Educational commit emails
3 contributors with educational email addresses -
+2
Science terms in README
1 scientific terms found in README
Penalties:
-
-15
No science keywords
No scientific terms found in keywords/classifiers
Very Likely Science (100)
Papers Mentioning vegan 6,903
10.1002/ece3.6714
The relationship between morphology and behavior in mixed‐species flocks of island birdsCited by: 4
Author(s): Brian C. Weeks, Shahid Naeem, Benjamin M. Winger, Joel Cracraft
Software Mentions: 3
Published: almost 6 years ago
10.1002/ece3.1632
Modeling directional spatio-temporal processes in island biogeographyCited by: 11
Author(s): José C. Carvalho, Pedro Cardoso, François Rigal, Kostas A. Triantis, Paulo A. V. Borges
Software Mentions: 3
Published: almost 11 years ago
10.1002/ece3.2371
Large‐scale dark diversity estimates: new perspectives with combined methodsCited by: 20
Author(s): Argo Ronk, Francesco de Bello, Pavel Fibich, Meelis Pärtel
Software Mentions: 3
Published: about 10 years ago
10.1002/ece3.4504
Methylation divergence of invasive<i>Ciona</i>ascidians: Significant population structure and local environmental influenceCited by: 17
Author(s): Ping Ni, Shiguo Li, Ya‐Ping Lin, Wei Xiong, Xuena Huang, Aibin Zhan
Software Mentions: 3
Published: about 8 years ago
10.1002/ece3.762
Disentangling environmental correlates of vascular plant biodiversity in a <scp>M</scp> editerranean hotspotCited by: 34
Author(s): Rafael Molina‐Venegas, Abelardo Aparicio, Francisco José Pina, B. Valdés, Juan Arroyo
Software Mentions: 3
Published: about 13 years ago
10.1002/ece3.2450
Stable isotope-based trophic structure of pelagic fish and jellyfish across natural and anthropogenic landscape gradients in a fjord estuaryCited by: 12
Author(s): Sean M. Naman, Correigh M. Greene, Casimir A. Rice, Joshua Chamberlin, Letitia L. Conway-Cranos, Jeffery R. Cordell, Jason E. Hall, Linda D. Rhodes
Software Mentions: 3
Published: almost 10 years ago
10.1002/ece3.3043
Effects of Alpine land‐use changes: Soil macrofauna community revisitedCited by: 20
Author(s): Michael Steinwandter, Birgit C. Schlick‐Steiner, Gilg Seeber, Florian M. Steiner, Julia Seeber
Software Mentions: 3
Published: over 9 years ago
10.1002/ece3.6173
Seasonal dietary shifts enhance parasite transmission to lake salmonids during ice coverCited by: 7
Author(s): Sebastian Prati, Eirik Haugstvedt Henriksen, Rune Knudsen, Per‐Arne Amundsen
Software Mentions: 3
Published: over 6 years ago
10.1002/ece3.7722
Animal‐borne video systems provide insight into the reproductive behavior of the Asian black bearCited by: 9
Author(s): Tomoko Naganuma, Mii Tanaka, Shiori Tezuka, Sam M. J. G. Steyaert, Kahoko Tochigi, Akino Inagaki, Hiroaki Myojo, Koji Yamazaki, Shinsuke Koike
Software Mentions: 3
Published: over 5 years ago
10.1002/ece3.429
Invasion history and demographic pattern of<i>Cryphonectria hypovirus 1</i>across European populations of the chestnut blight fungusCited by: 59
Author(s): Sarah Franziska Bryner, Daniel Rigling, Patrick C. Brunner
Software Mentions: 3
Published: almost 14 years ago
10.1002/ece3.4853
Without management interventions, endemic wet‐sclerophyll forest is transitioning to rainforest in World Heritage listed K’gari (Fraser Island), AustraliaCited by: 6
Author(s): Vithya Krishnan, Nicole Robinson, Jennifer Firn, G. Applegate, John Herbohn, Susanne Schmidt
Software Mentions: 3
Published: over 7 years ago
10.1002/ece3.7361
Identifying the patterns of changes in α‐ and β‐diversity across <i>Dacrydium pectinatum</i> communities in Hainan Island, ChinaCited by: 5
Author(s): Haodong Liu, Hua Liu, Yongfu Chen, Zheng Xu, Yunchuan Dai, Qiao Chen, Yongkang Ma
Software Mentions: 3
Published: over 5 years ago
10.1002/ece3.7218
Burrowing by translocated boodie ( Bettongia lesueur ) populations alters soils but has limited effects on vegetationCited by: 5
Author(s): Bryony Palmer, Leonie E. Valentine, Cheryl A. Lohr, Gergana N. Daskalova, Richard J. Hobbs
Software Mentions: 3
Published: over 5 years ago
10.1002/ece3.7640
Common spatial patterns of trees in various tropical forests: Small trees are associated with increased diversity at small spatial scalesCited by: 3
Author(s): Pavel Fibich, Vojtěch Novotný, Sisira Ediriweera, Savitri Gunatilleke, Nimal Gunatilleke, Kenneth Molem, George D. Weiblen, Jan Lepš
Software Mentions: 3
Published: over 5 years ago
10.1002/ece3.8035
Allochthonous resources are less important for faunal communities on highly productive, small tropical islandsCited by: 1
Author(s): Sebastian Steibl, Robert Sigl, Sanja Bláha, Sophia Drescher, Gerhard Gebauer, Elif Gürkal, Frederic Hüftlein, Anna Satzger, Michael Schwarzer, Dimitri Seidenath, Jana Welfenbach, Raphael S. Zinser, Christian Laforsch
Software Mentions: 3
Published: about 5 years ago
10.1002/ece3.4213
<scp>eDNA</scp> metabarcoding as a new surveillance approach for coastal Arctic biodiversityCited by: 128
Author(s): Anaïs Lacoursière‐Roussel, Kimberly L. Howland, Éric Normandeau, Erin K. Grey, Philippe Archambault, Kristy Deiner, David M. Lodge, Cécilia Hernandez, Noémie Leduc, Louis Bernatchez
Software Mentions: 3
Published: about 8 years ago
10.1002/ece3.6562
Classifying biogeographic realms of the endemic fauna in the Afro‐Arabian regionCited by: 6
Author(s): Alaaeldin Soultan, Martin Wikelski, Kamran Safi
Software Mentions: 3
Published: about 6 years ago
10.1002/ece3.4581
The metric matters when assessing diversity: Assessing lepidopteran species richness and diversity in two habitats under different disturbance regimesCited by: 4
Author(s): Lucinda Kirkpatrick, Sonia Mitchell, Kirsty Park
Software Mentions: 3
Published: almost 8 years ago
10.1002/ece3.4949
Shared and unique features of bacterial communities in native forest and vineyard phyllosphereCited by: 14
Author(s): Tohru Miura, Roland Sánchez, Luis E. Castañeda, Karina Godoy, Olga Barbosa
Software Mentions: 3
Published: over 7 years ago
10.1002/ece3.6341
Effects of the soil microbiome on the demography of two annual prairie plantsCited by: 2
Author(s): Hannah Reynolds, Rebekah Wagner, Guangzhou Wang, Haley M. Burrill, James D. Bever, Helen M. Alexander
Software Mentions: 3
Published: over 6 years ago
10.1111/1462-2920.15232
Putative degraders of low‐density polyethylene‐derived compounds are ubiquitous members of plastic‐associated bacterial communities in the marine environmentCited by: 14
Author(s): Maria Pinto, Paula Polania Zenner, Teresa M. Langer, Jesse Patrick Harrison, Meinhard Simon, Marta M. Varela, Gerhard J. Herndl
Software Mentions: 3
Published: almost 6 years ago
10.1111/1462-2920.14882
Structure and ecological function of the soil microbiome affecting plant–soil feedbacks in the presence of a soil‐borne pathogenCited by: 33
Author(s): S. Emilia Hannula, Hui Ma, Juan E. Pérez‐Jaramillo, Ana Pineda, T. Martijn Bezemer
Software Mentions: 3
Published: almost 7 years ago
10.1111/1462-2920.15546
A novel methoxydotrophic metabolism discovered in the hyperthermophilic archaeon <i>Archaeoglobus fulgidus</i>Cited by: 9
Author(s): Cornelia U. Welte, R.M. de Graaf, Paula Dalcin Martins, Robert S. Jansen, Mike S. M. Jetten, Julia M. Kurth
Software Mentions: 3
Published: over 5 years ago
10.1186/s40793-021-00383-0
Changes in the root-associated bacteria of sorghum are driven by the combined effects of salt and sorghum developmentCited by: 17
Author(s): Yukun Gao, Jianghui Cui, Ge Ren, Wei Shilin, Yang Puyuan, Congpei Yin, Liang Hongkai, Chang Jin-hua
Software Mentions: 3
Published: about 5 years ago
10.1186/s40793-019-0347-1
The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samplesCited by: 58
Author(s): Hyun S. Gweon, Liam P. Shaw, Jeremy Swann, Nicola De Maio, Manal AbuOun, René Niehus, Alasdair T. M. Hubbard, Michael J. Bowes, Mark Bailey, Tim Peto, Sarah Hoosdally, A Sarah Walker, Robert Sebra, Derrick W. Crook, Muna F. Anjum, Daniel S. Read, Nicole Stoesser
Software Mentions: 3
Published: almost 7 years ago
10.1007/s11356-020-11437-0
250-year records of mercury and trace element deposition in two lakes from Cajas National Park, SW Ecuadorian AndesCited by: 7
Author(s): Tobias Schneider, Benjamin A. Musa Bandowe, Moritz Bigalke, Adrien Mestrot, Henrietta Hampel, Pablo V. Mosquera, Lea Fränkl, Giulia Wienhues, Hendrik Vogel, Wojciech Tylmann, Martín Grosjean
Software Mentions: 3
Published: almost 6 years ago
10.1002/etc.4317
Multiyear monitoring of bird communities in chlorpyrifos‐treated orchards in Spain and the United Kingdom: Spatial and temporal trends in species composition, abundance, and site fidelityCited by: 2
Author(s): Ralf Dittrich, Benedikt Giessing, María Martínez Benito, Anja Russ, Christian Wolf, Manousos Foudoulakis, Steve Norman
Software Mentions: 3
Published: over 7 years ago
10.1038/s41431-019-0557-4
The paternal and maternal genetic history of Vietnamese populationsCited by: 20
Author(s): Enrico Macholdt, Liliana Arias, Nguyễn Thùy Dương, Nguyễn Đăng Tôn, Nguyễn Văn Phòng, Roland Schröder, Brigitte Pakendorf, Nông Văn Hải, Mark Stoneking
Software Mentions: 3
Published: almost 7 years ago
10.2807/1560-7917.ES.2019.24.6.1700774
Impact of rotavirus vaccination on rotavirus genotype distribution and diversity in England, September 2006 to August 2016Cited by: 34
Author(s): Daniel Hungerford, David J. Allen, Sameena Nawaz, Sarah Collins, Shamez Ladhani, Roberto Vivancos, Miren Iturriza‐Gómara
Software Mentions: 3
Published: over 7 years ago
10.1155/2020/3291853
Transcriptomic Analysis of Fuzi Lizhong Decoction for the Treatment of Stomach UlcersCited by: 2
Author(s): Xin Yang, Haijun Wang, Lei Xu
Software Mentions: 3
Published: over 6 years ago
10.1155/2016/6592363
Effect of Gender on the Knowledge of Medicinal Plants: Systematic Review and Meta-AnalysisCited by: 60
Author(s): Wendy Marisol Torres-Avilez, Patrícia Muniz de Medeiros, Ulysses Paulino Albuquerque
Software Mentions: 3
Published: over 10 years ago
10.1111/eva.13231
Leveraging genomics to understand threats to migratory birdsCited by: 4
Author(s): Brenda Larison, Alec R. Lindsay, Christen M. Bossu, Michael D. Sorenson, Jonas Kaplan, David C. Evers, James D. Paruk, Jeffrey M. DaCosta, Thomas B. Smith, Kristen Ruegg
Software Mentions: 3
Published: over 5 years ago
10.1111/eva.12384
Genetic consequences of selection cutting on sugar maple ( Acer saccharum Marshall)Cited by: 2
Author(s): Noémie Graignic, Francine Tremblay, Yves Bergeron
Software Mentions: 3
Published: over 10 years ago
10.1111/eva.12877
Northern European <i>Salmo trutta</i> (L.) populations are genetically divergent across geographical regions and environmental gradientsCited by: 23
Author(s): Dorte Bekkevold, Johann Höjesjö, Einar Eg Nielsen, David Aldvén, Thomas Damm Als, Marte Sodeland, Matthew Kent, Sigbjørn Lien, Michael Møller Hansen
Software Mentions: 3
Published: almost 7 years ago
10.1111/eva.12658
Structural and compositional mismatch between captive and wild Atlantic salmon (<i>Salmo salar</i>) parrs’ gut microbiota highlights the relevance of integrating molecular ecology for management and conservation methodsCited by: 30
Author(s): Camille Lavoie, Maxime Courcelle, Baptise Redivo, Nicolas Derôme
Software Mentions: 3
Published: about 8 years ago
10.1111/eva.12446
Managing cryptic biodiversity: Fine‐scale intralacustrine speciation along a benthic gradient in Alpine whitefish (<i>Coregonus</i> spp.)Cited by: 32
Author(s): Alan G. Hudson, Baenz Lundsgaard-Hansen, Kay Lucek, Pascal Vonlanthen, Ole Seehausen
Software Mentions: 3
Published: over 9 years ago
10.1111/eva.12934
Prior adaptation of parasitoids improves biological control of symbiont‐protected pestsCited by: 13
Author(s): Silvan Rossbacher, Christoph Vorburger
Software Mentions: 3
Published: over 6 years ago
10.1007/s10493-018-0314-3
Response of soil mites (Acari, Mesostigmata) to long-term Norway spruce plantation along a mountain streamCited by: 10
Author(s): Jacek Kamczyc, Maciej Skorupski, Marcin K. Dyderski, Anna Gazda, Mariusz Hachułka, Paweł Horodecki, Izabela Kałucka, Marek Malicki, Remigiusz Pielech, Michał Smoczyk, Sylwia Wierzcholska, Andrzej M. Jagodziński
Software Mentions: 3
Published: almost 8 years ago
10.1007/s00792-017-0992-5
Changes in bacterial and archaeal communities during the concentration of brine at the graduation towers in Ciechocinek spa (Poland)Cited by: 12
Author(s): Agnieszka Kalwasińska, Edyta Deja-Sikora, Aleksandra Burkowska‐But, Attila Szabó, Tamás Felföldi, Przemysław Kosobucki, Arkadiusz Krawiec, Maciej Walczak
Software Mentions: 3
Published: over 8 years ago
10.12688/f1000research.16804.4
Do you cov me? Effect of coverage reduction on metagenome shotgun sequencing studiesCited by: 10
Author(s): Federica Cattonaro, Alessandro Spadotto, Slobodanka Radović, Fabio Marroni
Software Mentions: 3
Published: over 6 years ago
10.12688/f1000research.13841.1
A comparison of computationally predicted functional metagenomes and microarray analysis for microbial P cycle genes in a unique basalt-soil forestCited by: 13
Author(s): Erick S. LeBrun, Sanghoon Kang
Software Mentions: 3
Published: over 8 years ago
10.12688/f1000research.13996.2
Birds of primary and secondary forest and shrub habitats in the peat swamp of Berbak National Park, SumatraCited by: 4
Author(s): Kevin Darras, Dedi Rahman, Waluyo Sugito, Yeni Mulyani, Dewi M. Prawiradilaga, Agus Rozali, Irfan Fitriawan, Teja Tscharntke
Software Mentions: 3
Published: over 8 years ago
10.12688/f1000research.22035.2
Staphylococcus aureus nasal carriage and microbiome composition among medical students from Colombia: a cross-sectional studyCited by: 8
Author(s): Niradiz Reyes, Oscar Montes, Stephanie Figueroa, Raj K. Tiwari, Christopher C. Sollecito, Rebecca Emmerich, Mykhaylo Usyk, Jan Geliebter, Robert D. Burk
Software Mentions: 3
Published: over 6 years ago
10.1002/2211-5463.12694
Alterations in the human gut microbiome associated with <i>Helicobacter pylori</i> infectionCited by: 29
Author(s): Daoming Wang, Yan Li, Zhong Huang, Qiuxia Ding, Yuxiang Lin, Shanmei Tang, Yang Zong, Qi Wang, Xiuqing Zhang, Huanming Yang, Rong Wang, Xiao Liu
Software Mentions: 3
Published: about 7 years ago
10.1093/femsec/fiaa163
Bacterial community assembly in Atlantic cod larvae (Gadus morhua): contributions of ecological processes and metacommunity structureCited by: 19
Author(s): Ragnhild Inderberg Vestrum, Kari J.K. Attramadal, Ôlav Vadstein, Madeleine S. Gundersen, Ingrid Bakke
Software Mentions: 3
Published: about 6 years ago
10.1093/femsec/fiab022
Soil depth matters: shift in composition and inter-kingdom co-occurrence patterns of microorganisms in forest soilsCited by: 39
Author(s): Sunil Mundra, O. Janne Kjønaas, Luis Morgado, Anders K. Krabberød, Yngvild Ransedokken, Håvard Kauserud
Software Mentions: 3
Published: over 5 years ago
10.3389/fmed.2021.586875
Impact on the Gut Microbiota of Intensive and Prolonged Antimicrobial Therapy in Patients With Bone and Joint InfectionCited by: 7
Author(s): Benoît Levast, Nicolas Benech, Cyrielle Gasc, Cécile Batailler, Éric Senneville, Sébastien Lustig, Cécile Pouderoux, David Boutoille, Lilia Boucinha, Frédéric‐Antoine Dauchy, Valérie Zeller, Marianne Maynard, Charles Cazanave, Thanh-Thuy Thi, Jérôme Josse, Joël Doré, Frédéric Laurent, Tristan Ferry
Software Mentions: 3
Published: over 5 years ago
10.3389/fmicb.2021.665975
Different Responses of Soil Bacterial Communities to Nitrogen Addition in Moss CrustCited by: 6
Author(s): Tingwen Huang, Weiguo Liu, Xiaojing Long, Yangyang Jia, Xiyuan Wang, Yinguang Chen
Software Mentions: 3
Published: about 5 years ago
10.3389/fmicb.2018.00999
Bacterial Communities in Riparian Sediments: A Large-Scale Longitudinal Distribution Pattern and Response to Dam ConstructionCited by: 35
Author(s): Juan Chen, Peifang Wang, Chao Wang, Xun Wang, Lingzhan Miao, Sheng Liu, Qiusheng Yuan
Software Mentions: 3
Published: over 8 years ago
10.3389/fmicb.2020.01936
Soil Microbiomes With the Genetic Capacity for Atmospheric Chemosynthesis Are Widespread Across the Poles and Are Associated With Moisture, Carbon, and Nitrogen LimitationCited by: 17
Author(s): Angelique E. Ray, Eden Zhang, Aleks Terauds, Mukan Ji, Weidong Kong, Belinda C. Ferrari
Software Mentions: 3
Published: about 6 years ago
10.3389/fmicb.2021.593023
Rhizodegradation of Pyrene by a Non-pathogenic Klebsiella pneumoniae Isolate Applied With Tagetes erecta L. and Changes in the Rhizobacterial CommunityCited by: 11
Author(s): Jina Rajkumari, Yashmin Choudhury, Kasturi Bhattacharjee, Piyush Pandey
Software Mentions: 3
Published: over 5 years ago
10.3389/fmicb.2021.628792
Heterogeneity of Microbial Communities in Soils From the Antarctic Peninsula RegionCited by: 14
Author(s): Pablo Almela, Ana Justel, Antonio Quesada
Software Mentions: 3
Published: over 5 years ago
10.3389/fmicb.2021.676880
Outbreaks of Root Rot Disease in Different Aged American Ginseng Plants Are Associated With Field Microbial DynamicsCited by: 16
Author(s): Ji Li, Fahad Nasir, Lei Tian, Jingjing Chang, Yu Sun, Jianfeng Zhang, Xiujun Li, Chunjie Tian
Software Mentions: 3
Published: about 5 years ago
10.3389/fmicb.2021.689653
Microbial Composition in the Duodenum and Ileum of Yellow Broilers With High and Low Feed EfficiencyCited by: 10
Author(s): Huijiao Lv, Yun Huang, Tao Wang, Shangkun Zhai, Zhuocheng Hou, Sirui Chen
Software Mentions: 3
Published: about 5 years ago
10.3389/fmicb.2018.03175
Depth-Dependent Environmental Drivers of Microbial Plankton Community Structure in the Northern Gulf of MexicoCited by: 17
Author(s): Cole G. Easson, Jose V. Lopez
Software Mentions: 3
Published: over 7 years ago
10.3389/fmicb.2021.694406
16S rRNA Gene Metabarcoding Indicates Species-Characteristic Microbiomes in Deep-Sea Benthic ForaminiferaCited by: 2
Author(s): I. Salonen, Panagiota-Myrsini Chronopoulou, Hidetaka Nomaki, Dewi Langlet, Masashi Tsuchiya, Karoliina A. Koho
Software Mentions: 3
Published: about 5 years ago
10.3389/fmicb.2021.696835
Population Diversity, Dynamics, and Differentiation of Wheat Stripe Rust Pathogen Puccinia striiformis f. sp. tritici From 2010 to 2017 and Comparison With 1968 to 2009 in the United StatesCited by: 7
Author(s): Qing Bai, Anmin Wan, Meinan Wang, Deven R. See, Xianming Chen
Software Mentions: 3
Published: about 5 years ago
10.3389/fmicb.2020.596156
Substrate Pre-loading Influences Initial Colonization of GAC Biofilter BiofilmsCited by: 1
Author(s): Wen Qin, Frederik Hammes
Software Mentions: 3
Published: over 5 years ago
10.3389/fmicb.2017.00431
Reactivation of Deep Subsurface Microbial Community in Response to Methane or Methanol AmendmentCited by: 22
Author(s): Pauliina Rajala, Malin Bomberg
Software Mentions: 3
Published: over 9 years ago
10.3389/fmicb.2018.02409
Host Phylogeny Is a Major Determinant of Fagaceae-Associated Ectomycorrhizal Fungal Community Assembly at a Regional ScaleCited by: 27
Author(s): Bian Wu, Cheng Gao, Liang Chen, François Buscot, Kezia Goldmann, Witoon Purahong, Niu‐Niu Ji, Yong-Long Wang, Pingli Lu, Xingchun Li, Liang‐Dong Guo
Software Mentions: 3
Published: almost 8 years ago
10.3389/fmicb.2020.574815
The Response of Estuarine Ammonia-Oxidizing Communities to Constant and Fluctuating Salinity RegimesCited by: 5
Author(s): João P. Santos, António G G Sousa, Hugo Leonardo Coelho Ribeiro, Catarina Magalhães
Software Mentions: 3
Published: almost 6 years ago
10.3389/fmicb.2017.02198
Links between Soil Fungal Diversity and Plant and Soil Properties on the Loess PlateauCited by: 76
Author(s): Yang Yang, Yanxing Dou, Yanqun Huang, Shaoshan An
Software Mentions: 3
Published: almost 9 years ago
10.3389/fmicb.2017.01997
Amplicon-Based Sequencing of Soil Fungi from Wood Preservative Test SitesCited by: 9
Author(s): Grant T. Kirker, Amy B. Bishell, Michelle A. Jusino, Jonathan M. Palmer, William J. Hickey, Daniel L. Lindner
Software Mentions: 3
Published: almost 9 years ago
10.3389/fmicb.2018.03282
High-Throughput Sequence Analyses of Bacterial Communities and Multi-Mycotoxin Profiling During Processing of Different Formulations of Kunu, a Traditional Fermented BeverageCited by: 38
Author(s): Chibundu N. Ezekiel, Kolawole I. Ayeni, Obinna T. Ezeokoli, Michael Sulyok, Deidre Alima Bregene van Wyk, Oluwawapelumi A. Oyedele, Muiz O. Akinyemi, Ihuoma E. Chibuzor-Onyema, Rasheed Adeleke, Cyril C. Nwangburuka, Jana Hajšlová, Christopher T. Elliott, Rudolf Krska
Software Mentions: 3
Published: over 7 years ago
10.3389/fmicb.2020.01272
Microbiomes of Caribbean Octocorals Vary Over Time but Are Resistant to Environmental ChangeCited by: 20
Author(s): Mark McCauley, Colin R. Jackson, Tamar L. Goulet
Software Mentions: 3
Published: over 6 years ago
10.3389/fmicb.2017.00796
Biogeographic Comparison of Lophelia-Associated Bacterial Communities in the Western Atlantic Reveals Conserved Core MicrobiomeCited by: 33
Author(s): Christina A. Kellogg, Dawn B. Goldsmith, Michael A. Gray
Software Mentions: 3
Published: over 9 years ago
10.3389/fmicb.2018.02629
Catch Crop Residues Stimulate N2O Emissions During Spring, Without Affecting the Genetic Potential for Nitrite and N2O ReductionCited by: 17
Author(s): Yun-Feng Duan, Sara Hallin, Christopher M. Jones, Anders Priemé, Rodrigo Labouriau, Søren O. Petersen
Software Mentions: 3
Published: almost 8 years ago
10.3389/fmicb.2021.630605
The Rumen Bacterial Community in Dairy Cows Is Correlated to Production Traits During Freshening PeriodCited by: 11
Author(s): Shuai Huang, Shoukun Ji, Garret Suen, Feiran Wang, Shengli Li
Software Mentions: 3
Published: over 5 years ago
10.3389/fmicb.2020.610974
Responses of Free-Living Vibrio Community to Seasonal Environmental Variation in a Subtropical Inland BayCited by: 10
Author(s): Xing Chen, Huaxian Zhao, Gonglingxia Jiang, Junwu Tang, Qiangsheng Xu, Lengjinghua Huang, Si Chen, Shuqi Zou, Ke Dong, Nan Li
Software Mentions: 3
Published: almost 6 years ago
10.3389/fmicb.2018.01926
Endophytic Bacterial Community Structure and Function of Herbaceous Plants From Petroleum Hydrocarbon Contaminated and Non-contaminated SitesCited by: 20
Author(s): Rhea Lumactud, Roberta R. Fulthorpe
Software Mentions: 3
Published: about 8 years ago
10.3389/fmicb.2017.02071
Microbial Taxa Distribution Is Associated with Ecological Trophic Cascades along an Elevation GradientCited by: 119
Author(s): Fei Yao, Shan Yang, Zhirui Wang, Xue Wang, Ji Ye, Xugao Wang, Jennifer M. DeBruyn, Feng Xue, Yong Jiang, Hui Li
Software Mentions: 3
Published: almost 9 years ago
10.3389/fmicb.2018.02662
Plant Litter Type Dictates Microbial Communities Responsible for Greenhouse Gas Production in Amended Lake SedimentsCited by: 15
Author(s): Kurt M. Yakimovich, Erik J. S. Emilson, M. A. Carson, Andrew J. Tanentzap, Nathan Basiliko, Nadia Mykytczuk
Software Mentions: 3
Published: almost 8 years ago
10.3389/fmicb.2018.02360
Keystone Species in Pregnancy Gingivitis: A Snapshot of Oral Microbiome During Pregnancy and Postpartum PeriodCited by: 51
Author(s): Preethi Balan, Yap Seng Chong, Shivshankar Umashankar, Sanjay Swarup, Wong Mun Loke, Violeta Lopez, Hong He, Chaminda Jayampath Seneviratne
Software Mentions: 3
Published: almost 8 years ago
10.3389/fmicb.2020.597653
Cryopreservation and Resuscitation of Natural Aquatic Prokaryotic CommunitiesCited by: 4
Author(s): Angel Rain‐Franco, Guilherme Pavan de Moraes, Sara Beier
Software Mentions: 3
Published: over 5 years ago
10.3389/fmicb.2018.00971
Characterization of Microcystis (Cyanobacteria) Genotypes Based on the Internal Transcribed Spacer Region of rRNA by Next-Generation SequencingCited by: 13
Author(s): Da Huo, Youxin Chen, Tao Zheng, Liu Xiang, Xinyue Zhang, Ge Yu, Zhiyi Qiao, Renhui Li
Software Mentions: 3
Published: over 8 years ago
10.3389/fmicb.2017.00874
Microbial Community Dynamics in Soil Depth Profiles Over 120,000 Years of Ecosystem DevelopmentCited by: 38
Author(s): Stephanie Turner, Robert Mikutta, Sandra Meyer-Stüve, Georg Guggenberger, Frank Schaarschmidt, Cassandre Sara Lazar, R. Dohrmann, Axel Schippers
Software Mentions: 3
Published: over 9 years ago
10.3389/fmicb.2016.00092
Short-Term Rhizosphere Effect on Available Carbon Sources, Phenanthrene Degradation, and Active Microbiome in an Aged-Contaminated Industrial SoilCited by: 52
Author(s): François Thomas, Aurélie Cébron
Software Mentions: 3
Published: over 10 years ago
10.3389/fmicb.2019.01534
Effects of Hardwood Biochar on Methane Production, Fermentation Characteristics, and the Rumen Microbiota Using Rumen SimulationCited by: 35
Author(s): Rebecca Teoh, Eleonora Caro, Devin B. Holman, Stephen Joseph, S. J. Meale, Alex V. Chaves
Software Mentions: 3
Published: about 7 years ago
10.3389/fmicb.2017.02622
Functional Characteristics of the Flying Squirrel's Cecal Microbiota under a Leaf-Based Diet, Based on Multiple Meta-Omic ProfilingCited by: 4
Author(s): Hsiao Pei Lu, Po-Yu Liu, Yu Bin Wang, Ji Fan Hsieh, Han Chen Ho, Shu‐Mei Huang, Chung Yen Lin, Chih‐hao Hsieh, Hongjun Yu
Software Mentions: 3
Published: over 8 years ago
10.3389/fmicb.2021.643945
Evaluation of Three Prokaryote Primers for Identification of Prokaryote Community Structure and Their Abode Preference in Three Distinct Wetland EcosystemsCited by: 2
Author(s): Kavita Kumari, Malay Naskar, Md. Aftabuddin, Soma Das Sarkar, Bandana Das Ghosh, Uttam Kumar Sarkar, Subir Nag, Chayna Jana, Basanta Kumar Das
Software Mentions: 3
Published: about 5 years ago
10.3389/fmicb.2019.00505
Belowground Consequences of Intracontinental Range-Expanding Plants and Related Natives in Novel EnvironmentsCited by: 4
Author(s): Marta Manrubia, L. Basten Snoek, Carolin Weser, G. F. Veen, Wim H. van der Putten
Software Mentions: 3
Published: over 7 years ago
10.3389/fmicb.2020.00796
Biotic and Environmental Drivers of Plant Microbiomes Across a Permafrost Thaw GradientCited by: 20
Author(s): Moira Hough, Amelia McClure, Benjamin Bolduc, Ellen Dorrepaal, S. R. Saleska, Vanja Klepac‐Ceraj, V. I. Rich
Software Mentions: 3
Published: over 6 years ago
10.3389/fmicb.2014.00531
Phylogeny and phylogeography of functional genes shared among seven terrestrial subsurface metagenomes reveal N-cycling and microbial evolutionary relationshipsCited by: 58
Author(s): Maggie C. Y. Lau, Connor Cameron, Cara Magnabosco, C. Titus Brown, Faye Schilkey, Sharon L. Grim, Sarah Hendrickson, Michael J. Pullin, Barbara Sherwood Lollar, Esta van Heerden, Thomas L. Kieft, Tullis C. Onstott
Software Mentions: 3
Published: almost 12 years ago
10.3389/fmicb.2015.01537
Microbial Community Structure in the Rhizosphere of Rice PlantsCited by: 118
Author(s): Björn Breidenbach, Judith Pump, Marc G. Dumont
Software Mentions: 3
Published: over 10 years ago
10.3389/fmicb.2020.00518
Depth Influences Symbiodiniaceae Associations Among Montastraea cavernosa Corals on the Belize Barrier ReefCited by: 24
Author(s): Ryan J. Eckert, Ashley M Reaume, Alexis B. Sturm, Michael S. Studivan, Joshua D. Voss
Software Mentions: 3
Published: over 6 years ago
10.3389/fmicb.2020.00069
Oral Administration of Heat-Treated Lactobacilli Modifies the Murine Microbiome and Reduces Citrobacter Induced ColitisCited by: 18
Author(s): Alicja K. Warda, Pedro H. de Almeida Bettio, Cara M. Hueston, Giulio Di Benedetto, Adam G. Clooney, Colin Hill
Software Mentions: 3
Published: over 6 years ago
10.3389/fmicb.2021.715241
Synbiotics Containing Nanoprebiotics: A Novel Therapeutic Strategy to Restore Gut DysbiosisCited by: 2
Author(s): Liang Hong, Sang-Mok Lee, Whee‐Soo Kim, Yun‐Jaie Choi, Seo-Ho Oh, Yuling Li, Sun-Hye Choi, Chung‐Chih Wu, Eunkyoung Jung, Seoung-Hun Kang, Chong‐Su Cho
Software Mentions: 3
Published: about 5 years ago
10.3389/fmicb.2019.00257
Changes in Bacterioplankton Communities Resulting From Direct and Indirect Interactions With Trace Metal Gradients in an Urbanized Marine Coastal AreaCited by: 36
Author(s): Clément Coclet, Cédric Garnier, Guy Durrieu, Dario Omanović, Sébastien D’Onofrio, Christophe Le Poupon, Jean-Ulrich Mullot, Jean‐François Briand, Benjamin Misson
Software Mentions: 3
Published: over 7 years ago
10.3389/fmicb.2021.650440
Fungal Community Composition and Diversity Vary With Soil Horizons in a Subtropical ForestCited by: 17
Author(s): Xia Luo, Kezhong Liu, Yiming Shen, Guojing Yao, Wenge Yang, Peter E. Mortimer, Heng Gui
Software Mentions: 3
Published: about 5 years ago
10.3389/fmicb.2020.01598
Genetic Identity and Herbivory Drive the Invasion of a Common Aquatic Microbial InvaderCited by: 1
Author(s): Sarah Bolius, Karoline Morling, Claudia Wiedner, Guntram Weithoff
Software Mentions: 3
Published: about 6 years ago
10.3389/fmicb.2020.570960
Gut Bacteriome Analysis of Anastrepha fraterculus sp. 1 During the Early Steps of Laboratory ColonizationCited by: 5
Author(s): Julieta Salgueiro, Lida E. Pimper, Diego Fernando Segura, Fabián Horacio Milla, Romina Russo, Elias Asimakis, Panagiota Stathopoulou, Kostas Bourtzis, Jorge Luis Cladera, George Tsiamis, Silvia Beatriz Lanzavecchia
Software Mentions: 3
Published: almost 6 years ago
10.3389/fmicb.2017.02243
Low Microbial Diversity and Abnormal Microbial Succession Is Associated with Necrotizing Enterocolitis in Preterm InfantsCited by: 60
Author(s): Priscila Caroline Thiago Dobbler, Renato S. Procianoy, Volker Mai, Rita de Cássia dos Santos Silveira, Andrea Corso, Bruna Schafer Rojas, Luiz Fernando Würdig Roesch
Software Mentions: 3
Published: almost 9 years ago
10.3389/fmicb.2021.729039
Deep Investigating the Changes of Gut Microbiome and Its Correlation With the Shifts of Host Serum Metabolome Around Parturition in SowsCited by: 7
Author(s): Hao Fu, Maozhang He, Jinyuan Wu, Yunyan Zhou, Shanlin Ke, Zhe Chen, Qin Liu, Min Liu, Hui Jiang, Lusheng Huang, Congying Chen
Software Mentions: 3
Published: about 5 years ago
10.3389/fmicb.2020.574146
Successional Change of the Fungal Microbiome Pine Seedling Roots Inoculated With Tricholoma matsutakeCited by: 8
Author(s): Ki Hyeong Park, Seung‐Yoon Oh, Shinnam Yoo, Myung Soo Park, Jonathan J. Fong, Young Woon Lim
Software Mentions: 3
Published: almost 6 years ago
10.3389/fmicb.2019.01169
Metabarcoding Insights Into the Trophic Behavior and Identity of Intertidal Benthic ForaminiferaCited by: 20
Author(s): Panagiota-Myrsini Chronopoulou, I. Salonen, Clare Bird, Gert‐Jan Reichart, Karoliina A. Koho
Software Mentions: 3
Published: over 7 years ago
10.3389/fmicb.2021.598180
Microbial Community Field Surveys Reveal Abundant Pseudomonas Population in Sorghum Rhizosphere Composed of Many Closely Related PhylotypesCited by: 14
Author(s): Dawn Chiniquy, Elle M. Barnes, Jizhong Zhou, Kyle Hartman, Xiaohui Li, Amy Sheflin, Allyn Pella, Ellen L. Marsh, Jessica E. Prenni, Adam M. Deutschbauer, Daniel P. Schachtman, Susannah G. Tringe
Software Mentions: 3
Published: over 5 years ago
10.3389/fmicb.2019.00858
Atmospheric Deposition Impact on Bacterial Community Composition in the NW MediterraneanCited by: 13
Author(s): Isabel Marin-Beltran, Jürg Brendan Logue, Anders F. Andersson, Francesc Peters
Software Mentions: 3
Published: over 7 years ago
10.3389/fmicb.2015.00130
Evaluating variation in human gut microbiota profiles due to DNA extraction method and inter-subject differencesCited by: 133
Author(s): Brett Wagner Mackenzie, David W. Waite, Michael W. Taylor
Software Mentions: 3
Published: over 11 years ago
10.3389/fmicb.2019.02699
Temporal Stability of Bacterial Communities in Antarctic SpongesCited by: 19
Author(s): César Cárdenas, Alejandro Font, Georg Steinert, Rodolfo Rondon, Marcelo González-Aravena
Software Mentions: 3
Published: almost 7 years ago
10.3389/fmicb.2021.605285
Microbiome Analyses Demonstrate Specific Communities Within Five Shark SpeciesCited by: 10
Author(s): Rachael Storo, Cole G. Easson, Mahmood S. Shivji, Jose V. Lopez
Software Mentions: 3
Published: over 5 years ago