cran: vegan | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2017.01301

Fungal Communities in Rhizosphere Soil under Conservation Tillage Shift in Response to Plant Growth
Cited by: 63
Author(s): Ziting Wang, Tong Li, Xiaoxia Wen, Yang Liu, Jie Han, Yuncheng Liao, Jennifer M. DeBruyn
Software Mentions: 3
Published: about 9 years ago

10.1007/s13280-020-01343-7

Ecosystem restoration in fire-managed savanna woodlands: Effects on biodiversity, local livelihoods and fire intensity
Cited by: 8
Author(s): Maria U. Johansson, Firew Bekele Abebe, Sileshi Nemomissa, Tamrat Bekele, Kristoffer Hylander
Software Mentions: 3
Published: over 6 years ago

10.1186/s12866-018-1326-1

Gut microbiota of preterm infants supplemented with probiotics: sub-study of the ProPrems trial
Cited by: 46
Author(s): Erica L Plummer, Dieter Bulach, Gerald L Murray, Susan E Jacobs, Sepehr N. Tabrizi, Suzanne M. Garland
Software Mentions: 3
Published: almost 8 years ago

10.3390/biology10080769

The Impact of Host Genotype, Intestinal Sites and Probiotics Supplementation on the Gut Microbiota Composition and Diversity in Sheep
Cited by: 2
Author(s): Xiaoqi Wang, Zhichao Zhang, Xiaoping Wang, Qi Bao, Rujing Wang, Ziyuan Duan
Software Mentions: 3
Published: about 5 years ago

10.3389/fmicb.2021.683714

Gut Microbial SNPs Induced by High-Fiber Diet Dominate Nutrition Metabolism and Environmental Adaption of Faecalibacterium prausnitzii in Obese Children
Cited by: 7
Author(s): Hui Li, Liping Zhao, Menghui Zhang
Software Mentions: 3
Published: over 5 years ago

10.3390/biology9100315

Phenotypic Responses, Reproduction Mode and Epigenetic Patterns under Temperature Treatments in the Alpine Plant Species Ranunculus kuepferi (Ranunculaceae)
Cited by: 9
Author(s): Eleni Syngelaki, Mareike Daubert, Simone Klatt, Elvira Hörandl
Software Mentions: 3
Published: almost 6 years ago

10.3390/biology10090827

Plant Resources Utilization among Different Ethnic Groups of Ladakh in Trans-Himalayan Region
Cited by: 20
Author(s): Shiekh Marifatul Haq, Umer Yaqoob, Eduardo Soares Calixto, Inayat Ur Rahman, Abeer Hashem, Maha Abdullah Alakeel, Mohnad Abdalla, Musheerul Hassan, Rainer W. Bussmann, Arshad Mehmood Abbasi, Sami Ur Rahman, Farhana Ijaz
Software Mentions: 3
Published: about 5 years ago

10.3389/fmicb.2017.00785

Response of Methanogenic Microbial Communities to Desiccation Stress in Flooded and Rain-Fed Paddy Soil from Thailand
Cited by: 31
Author(s): Andreas Reim, Marcela Hernández, Melanie Klose, Amnat Chidthaisong, Monthira Yuttitham, Ralf Conrad
Software Mentions: 3
Published: over 9 years ago

10.1128/AEM.02307-20

Dynamic Gut Microbiome Changes in Response to Low-Iron Challenge
Cited by: 15
Author(s): Genevieve Coe, Nicholas V. Pinkham, Arianna I. Celis, Christina Johnson, Jennifer L. DuBois, Seth T. Walk
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2016.01884

Diazotroph Diversity in the Sea Ice, Melt Ponds, and Surface Waters of the Eurasian Basin of the Central Arctic Ocean
Cited by: 31
Author(s): Mar Fernández‐Méndez, Kendra A. Turk‐Kubo, Pier Luigi Buttigieg, Josephine Z. Rapp, Thomas Krumpen, Jonathan P. Zehr, Antje Boetius
Software Mentions: 3
Published: almost 10 years ago

10.3389/fmicb.2020.578600

A Curricular Bioinformatics Approach to Teaching Undergraduates to Analyze Metagenomic Datasets Using R
Cited by: 5
Author(s): Anne Kruchten
Software Mentions: 3
Published: about 6 years ago

10.1186/s12866-018-1174-z

Environmental factors shaping the diversity of bacterial communities that promote rice production
Cited by: 45
Author(s): Zhaohui Wu, Qingshu Liu, Zhenyu Li, Wanli Cheng, Jun Sun, Zhaohui Guo, Yongmei Li, Jianqun Zhou, Delong Meng, Hongbo Li, Ping Lei, Huaqun Yin
Software Mentions: 3
Published: over 8 years ago

10.3389/fmicb.2020.576750

Variability of the Atmospheric PM10 Microbiome in Three Climatic Regions of France
Cited by: 6
Author(s): Abdoulaye Samaké, Jean M.F. Martins, Aurélie Bonin, Gaëlle Uzu, Pierre Taberlet, Sébastien Conil, Olivier Favez, Alexandre Thomasson, Benjamin Chazeau, Nicolas Marchand, Jean-Luc Jaffrezo
Software Mentions: 3
Published: over 5 years ago

10.1186/s40168-019-0676-8

Unprecedented bacterial community richness in soybean nodules vary with cultivar and water status
Cited by: 44
Author(s): Hazem Sharaf, Richard R. Rodrigues, Jin-Young Moon, Bo Zhang, Kerri Mills, Mark A. Williams
Software Mentions: 3
Published: over 7 years ago

10.1186/s40168-018-0429-0

A novel affordable reagent for room temperature storage and transport of fecal samples for metagenomic analyses
Cited by: 47
Author(s): Mo Han, Lilan Hao, Yuxiang Lin, Fang Li, Jian Wang, Huanming Yang, Liang Xiao, Karsten Kristiansen, Huijue Jia, Junhua Li
Software Mentions: 3
Published: over 8 years ago

10.3389/fmicb.2020.541972

Metagenomic Characterization of the Microbiome and Resistome of Retail Ground Beef Products
Cited by: 11
Author(s): Enrique Doster, K. Thomas, Margaret D. Weinroth, Jennifer Parker, K.K. Crone, Terrance M. Arthur, J. W. Schmidt, T. L. Wheeler, K. E. Belk, Paul S. Morley
Software Mentions: 3
Published: almost 6 years ago

10.1186/s40168-021-01049-2

Specific and conserved patterns of microbiota-structuring by maize benzoxazinoids in the field
Cited by: 41
Author(s): Selma Cadot, Hang Guan, Moritz Bigalke, Jean‐Claude Walser, Georg Jander, Matthias Erb, Marcel G. A. van der Heijden, Klaus Schlaeppi
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0115775

Bouncing Back: Plant-Associated Soil Microbes Respond Rapidly to Prairie Establishment
Cited by: 27
Author(s): Anna Herzberger, David S. Duncan, Randall D. Jackson
Software Mentions: 3
Published: over 11 years ago

10.1186/s12866-021-02156-8

Microbial predation accelerates granulation and modulates microbial community composition
Cited by: 7
Author(s): Siew Herng Chan, Muhammad Hafiz Ismail, Chuan Hao Tan, Scott A. Rice, Diane McDougald
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2019.02103

16S rRNA Gene Amplicon Based Metagenomic Signatures of Rhizobiome Community in Rice Field During Various Growth Stages
Cited by: 16
Author(s): Madangchanok Imchen, Ranjith Kumavath, Aline B. M. Vaz, Aristóteles Goés-Neto, Debmalya Barh, Preetam Ghosh, Natalia Kozyrovska, Olga Podolich, Vasco Azevedo
Software Mentions: 3
Published: almost 7 years ago

10.1007/s00442-019-04473-2

The evolutionary species pool concept does not explain occurrence patterns of dead-wood-dependent organisms: implications for logging residue extraction
Cited by: 2
Author(s): Thomas Ranius, Aino Hämäläinen, Jörgen Sjögren, Matthew Hiron, Dennis Jonason, Ariana Kubart, Martin Schroeder, Anders Dahlberg, Gōran Thor, Mats Jonsell
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-021-89353-7

Strong variations in urban allergenicity riskscapes due to poor knowledge of tree pollen allergenic potential
Cited by: 15
Author(s): Rita Sousa-Silva, Audrey Smargiassi, Daniel Kneeshaw, Jérôme Dupras, Kate Zinszer, Alain Paquette
Software Mentions: 3
Published: over 5 years ago

10.3390/s20010286

Classification of Sleep Apnea Severity by Electrocardiogram Monitoring Using a Novel Wearable Device
Cited by: 25
Author(s): Florent Baty, Maximilian Boesch, Sandra Widmer, Simon Annaheim, Piero Fontana, Martin Camenzind, René M. Rossi, Otto D. Schoch, Martin Brutsche
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2021.668238

High Potential for Biomass-Degrading Enzymes Revealed by Hot Spring Metagenomics
Cited by: 14
Author(s): Nicholas J. Reichart, Robert M. Bowers, Tanja Woyke, Roland Hatzenpichler
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-89516-6

The lower respiratory tract microbiome of critically ill patients with COVID-19
Cited by: 42
Author(s): Paolo Gaibani, Elisa Viciani, Michele Bartoletti, Russell E. Lewis, Tommaso Tonetti, Donatella Lombardo, Andréa Castagnetti, Federica Bovo, Clara Solera Horna, Marco Ranieri, Pierluigi Viale, Maria Carla Re, Simone Ambretti
Software Mentions: 3
Published: over 5 years ago

10.1186/s40168-020-0789-0

Community recovery dynamics in yellow perch microbiome after gradual and constant metallic perturbations
Cited by: 20
Author(s): Bachar Cheaib, Hamza Seghouani, Umer Zeeshan Ijaz, Nicolas Derôme
Software Mentions: 3
Published: over 6 years ago

10.1016/j.biocon.2015.12.003

Similar biodiversity of ectomycorrhizal fungi in set-aside plantations and ancient old-growth broadleaved forests
Cited by: 29
Author(s): Rebecca Spake, Sietse van der Linde, Adrian C. Newton, Laura M. Suz, Martin I. Bidartondo, C. Patrick Doncaster
Software Mentions: 3
Published: over 10 years ago

10.3389/fmicb.2019.02951

The Composition and Phosphorus Cycling Potential of Bacterial Communities Associated With Hyphae of Penicillium in Soil Are Strongly Affected by Soil Origin
Cited by: 14
Author(s): Xiuli Hao, Yan Zhu, Ole Nybroe, Mette Haubjerg Nicolaisen
Software Mentions: 3
Published: over 6 years ago

10.3390/ani10101742

The Impact of Producing Type and Dietary Crude Protein on Animal Performances and Microbiota Together with Greenhouse Gases Emissions in Growing Pigs
Cited by: 2
Author(s): Ahmad Reza Seradj, J. Balcells, Laura Sarri, Lorenzo Fraile, Gabriel de la Fuente Oliver
Software Mentions: 3
Published: almost 6 years ago

10.3389/fmicb.2019.02655

Soil Property and Plant Diversity Determine Bacterial Turnover and Network Interactions in a Typical Arid Inland River Basin, Northwest China
Cited by: 12
Author(s): Wenjuan Wang, Jianming Wang, Ziqi Ye, Tianhan Zhang, Laiye Qu, Jingwen Li
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0117630

Small but Powerful: Top Predator Local Extinction Affects Ecosystem Structure and Function in an Intermittent Stream
Cited by: 30
Author(s): Pablo Rodríguez‐Lozano, Iraima Verkaik, María Rieradevall, Narcı́s Prat
Software Mentions: 3
Published: over 11 years ago

10.1128/AEM.01394-18

Persistent Bacterial and Fungal Community Shifts Exhibited in Selenium-Contaminated Reclaimed Mine Soils
Cited by: 36
Author(s): Carla E. Rosenfeld, Bruce R. James, Cara M. Santelli
Software Mentions: 3
Published: about 8 years ago

10.3389/fmicb.2020.618144

Organic Acids as Alternatives for Antibiotic Growth Promoters Alter the Intestinal Structure and Microbiota and Improve the Growth Performance in Broilers
Cited by: 37
Author(s): Dong Dai, Kai Qiu, Haijun Zhang, Shu‐geng Wu, Yanming Han, Yuanyuan Wu, Guang‐hai Qi, Jing Wang
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2021.631882

Crop Rotation With Cress Increases Cucumber Yields by Regulating the Composition of the Rhizosphere Soil Microbial Community
Cited by: 18
Author(s): Xiaoya Gong, Jie Shi, Xingang Zhou, Tao Yuan, Danmei Gao, Fengzhi Wu
Software Mentions: 3
Published: over 5 years ago

10.1186/s40168-020-00846-5

Distinct actions of the fermented beverage kefir on host behaviour, immunity and microbiome gut-brain modules in the mouse
Cited by: 43
Author(s): Marcel van de Wouw, Aaron M. Walsh, Fiona Crispie, Lucas van Leuven, Joshua M. Lyte, Marcus Boehme, Gerard Clarke, Timothy G. Dinan, Paul D. Cotter
Software Mentions: 3
Published: over 6 years ago

10.1007/s00253-019-10242-1

Factors determining microbial colonization of liquid nitrogen storage tanks used for archiving biological samples
Cited by: 11
Author(s): Felizitas Bajerski, Antje Bürger, Birgit Glasmacher, E. R. Keller, Karin Müller, Kristin Mühldorfer, Manuela Nagel, Heinz Rüdel, Tobias Müller, Johannes Schenkel, Jörg Overmann
Software Mentions: 3
Published: almost 7 years ago

10.3390/bioengineering7010003

Inoculum Source Determines Acetate and Lactate Production during Anaerobic Digestion of Sewage Sludge and Food Waste
Cited by: 26
Author(s): Jan Moestedt, Maria Westerholm, Simon Isaksson, Anna Schnürer
Software Mentions: 3
Published: over 6 years ago

10.1038/s41396-020-00801-0

Relationships between nitrogen cycling microbial community abundance and composition reveal the indirect effect of soil pH on oak decline
Cited by: 47
Author(s): Kelly Scarlett, Sandra Denman, Dave R. Clark, Jack Forster, Elena Vanguelova, Nigel L. Brown, Corinne Whitby
Software Mentions: 3
Published: almost 6 years ago

10.1186/s40168-021-01137-3

Gut microbiota regulation of P-glycoprotein in the intestinal epithelium in maintenance of homeostasis
Cited by: 44
Author(s): Sage E. Foley, Christine Tuohy, Merran Dunford, Michael J. Grey, Heidi De Luca, Caitlin Cawley, Rose L. Szabady, Ana Maldonado‐Contreras, Jean Marie Houghton, Doyle V. Ward, Randall J. Mrsny, Beth A. McCormick
Software Mentions: 3
Published: about 5 years ago

10.1186/s13568-020-00984-x

Diversity of active root-associated methanotrophs of three emergent plants in a eutrophic wetland in northern China
Cited by: 15
Author(s): Jiahe Cui, Ji Zhao, Zheng Wang, Weiwei Cao, Shaohua Zhang, Jumei Liu, Zhihua Bao
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2019.00975

Long-Term Temperature Stress in the Coral Model Aiptasia Supports the “Anna Karenina Principle” for Bacterial Microbiomes
Cited by: 37
Author(s): Hanin Ibrahim Ahmed, Marcela Herrera, Yi Jin Liew, Manuel Aranda
Software Mentions: 3
Published: over 7 years ago

10.1186/s40168-021-01079-w

Low shifts in salinity determined assembly processes and network stability of microeukaryotic plankton communities in a subtropical urban reservoir
Cited by: 158
Author(s): Yuanyuan Mo, Peng Feng, Xiaofei Gao, Peng Xiao, Ramiro Logares, Erik Jeppesen, Kexin Ren, Yuanyuan Xue, Jun Yang
Software Mentions: 3
Published: over 5 years ago

10.1007/s00253-021-11478-6

The plant secondary compound swainsonine reshapes gut microbiota in plateau pikas (Ochotona curzoniae)
Cited by: 6
Author(s): Shien Ren, Chao Fan, Liangzhi Zhang, Xianjiang Tang, Haibo Fu, Chuanfa Liu, Shangang Jia, Yanming Zhang
Software Mentions: 3
Published: about 5 years ago

10.3389/fmicb.2019.01261

Mucosa-Associated Microbiota in Gastric Cancer Tissues Compared With Non-cancer Tissues
Cited by: 69
Author(s): Xiaohui Chen, Ang Wang, Aining Chu, Yuehua Gong, Yuan Yuan
Software Mentions: 3
Published: over 7 years ago

10.3389/fmicb.2017.02243

Low Microbial Diversity and Abnormal Microbial Succession Is Associated with Necrotizing Enterocolitis in Preterm Infants
Cited by: 60
Author(s): Priscila Caroline Thiago Dobbler, Renato S. Procianoy, Volker Mai, Rita de Cássia dos Santos Silveira, Andrea Corso, Bruna Schafer Rojas, Luiz Fernando Würdig Roesch
Software Mentions: 3
Published: almost 9 years ago

10.7554/eLife.49816

Genomic adaptations in information processing underpin trophic strategy in a whole-ecosystem nutrient enrichment experiment
Cited by: 16
Author(s): Jordan G. Okie, Amisha T. Poret-Peterson, Zarraz M.-P. Lee, Alexander Richter, Luis David Alcaraz, Luis E. Eguiarte, Janet L. Siefert, Valeria Souza, Chris L. Dupont, James J. Elser
Software Mentions: 3
Published: over 6 years ago

10.1186/s40168-015-0106-5

Cultivation of stable, reproducible microbial communities from different fecal donors using minibioreactor arrays (MBRAs)
Cited by: 100
Author(s): Jennifer M. Auchtung, Catherine D. Robinson, Robert A. Britton
Software Mentions: 3
Published: almost 11 years ago

10.1038/s41421-021-00248-3

Integrated characterization of SARS-CoV-2 genome, microbiome, antibiotic resistance and host response from single throat swabs
Cited by: 10
Author(s): Bo Lu, Yi Yan, Liting Dong, Lingling Han, Yawei Liu, Junping Yu, Jianjun Chen, Danyang Yi, Meiling Zhang, Xin Deng, Chao Wang, Runkun Wang, Dengpeng Wang, Hongping Wei, Di Liu, Chengqi Yi
Software Mentions: 3
Published: over 5 years ago

10.3390/ani10122352

Divergence in Gut Bacterial Community Structure between Male and Female Stag Beetles Odontolabis fallaciosa (Coleoptera, Lucanidae)
Cited by: 4
Author(s): Xia Wan, Yu Jiang, Yiyi Cao, Binghua Sun, Xingjia Xiang
Software Mentions: 3
Published: almost 6 years ago

10.3389/fmicb.2019.01339

Mining the Drilosphere: Bacterial Communities and Denitrifier Abundance in a No-Till Wheat Cropping System
Cited by: 23
Author(s): Daniel Schlatter, Catherine L. Reardon, Jodi Johnson‐Maynard, Erin S. Brooks, Kendall Kahl, Jessica Norby, David R. Huggins, Timothy C. Paulitz
Software Mentions: 3
Published: about 7 years ago

10.3389/fmicb.2020.570960

Gut Bacteriome Analysis of Anastrepha fraterculus sp. 1 During the Early Steps of Laboratory Colonization
Cited by: 5
Author(s): Julieta Salgueiro, Lida E. Pimper, Diego Fernando Segura, Fabián Horacio Milla, Romina Russo, Elias Asimakis, Panagiota Stathopoulou, Kostas Bourtzis, Jorge Luis Cladera, George Tsiamis, Silvia Beatriz Lanzavecchia
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12866-020-02024-x

High-throughput sequencing analysis of the rhizosphere arbuscular mycorrhizal fungi (AMF) community composition associated with Ferula sinkiangensis
Cited by: 15
Author(s): Yunfeng Luo, Zhongke Wang, Ya-Ling He, Guifang Li, Xinhua Lv, Zhuang Li
Software Mentions: 3
Published: almost 6 years ago

10.3389/fmicb.2020.619827

Neonicotinoid Seed Treatments Have Significant Non-target Effects on Phyllosphere and Soil Bacterial Communities
Cited by: 12
Author(s): Mona Parizadeh, Benjamin Mimee, Steven W. Kembel
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2020.01598

Genetic Identity and Herbivory Drive the Invasion of a Common Aquatic Microbial Invader
Cited by: 1
Author(s): Sarah Bolius, Karoline Morling, Claudia Wiedner, Guntram Weithoff
Software Mentions: 3
Published: about 6 years ago

10.3389/fmicb.2021.650440

Fungal Community Composition and Diversity Vary With Soil Horizons in a Subtropical Forest
Cited by: 17
Author(s): Xia Luo, Kezhong Liu, Yiming Shen, Guojing Yao, Wenge Yang, Peter E. Mortimer, Heng Gui
Software Mentions: 3
Published: about 5 years ago

10.3390/ani11082283

Changes in the Fecal Microbiota Associated with a Broad-Spectrum Antimicrobial Administration in Hospitalized Neonatal Foals with Probiotics Supplementation
Cited by: 2
Author(s): Francesca Freccero, Aliai Lanci, Jole Mariella, Elisa Viciani, Sara Quercia, Andréa Castagnetti, Carolina Castagnetti
Software Mentions: 3
Published: about 5 years ago

10.3389/fmicb.2019.00257

Changes in Bacterioplankton Communities Resulting From Direct and Indirect Interactions With Trace Metal Gradients in an Urbanized Marine Coastal Area
Cited by: 36
Author(s): Clément Coclet, Cédric Garnier, Guy Durrieu, Dario Omanović, Sébastien D’Onofrio, Christophe Le Poupon, Jean-Ulrich Mullot, Jean‐François Briand, Benjamin Misson
Software Mentions: 3
Published: over 7 years ago

10.1186/s40168-018-0522-4

Viral and metabolic controls on high rates of microbial sulfur and carbon cycling in wetland ecosystems
Cited by: 56
Author(s): Paula Dalcin Martins, Robert Danczak, Simon Roux, J. Howard Frank, Mikayla A. Borton, Richard A. Wolfe, Marie Burris, Michael J. Wilkins
Software Mentions: 3
Published: about 8 years ago

10.3390/toxins10040156

Temperature Effects Explain Continental Scale Distribution of Cyanobacterial Toxins
Cited by: 141
Author(s): Evanthia Mantzouki, Miquel Lürling, Jutta Fastner, Lisette N. de Senerpont Domis, Elżbieta Wilk‐Woźniak, Judita Koreivienė, Laura Seelen, Sven Teurlincx, Yvon Verstijnen, Wojciech Krztoń, Edward Walusiak, Jūratė Karosienė, Jūratė Kasperovičienė, Ksenija Savadova, Irma Vitonytė, Carmen Cillero Castro, Agnieszka Budzyńska, Ryszard Gołdyn, Anna Kozák, Joanna Rosińska, Elżbieta Szeląg-Wasielewska, Piotr Domek, Natalia Jakubowska-Krepska, Kinga Kwasiżur, Beata Messyasz, Aleksandra Pełechata, Mariusz Pełechaty, Mikołaj Kokociński, Ana García-Murcia, Monserrat Real, Elvira Romans, Jordi Noguero-Ribes, David Parreño Duque, Elísabeth Fernández-Morán, Nusret Karakaya, Kerstin Häggqvist, Nilsun Demir, Meryem Beklioğlu, Nur Filiz, Eti E. Levi, Uğur Işkın, Gizem Bezirci, Ülkü Nіhan Tavşanoğlu, Koray Özhan, Spyros Gkelis, Manthos Panou, Özden Fakıoğlu, Christos Avagianos, Triantafyllos Kaloudis, Kemal Çelik, Mete Yılmaz, Rafael Marcé, Núria Catalán, Andrea G. Bravo, Moritz Buck, William Colom-Montero, Kristiina Mustonen, Don Pierson, Yang Yang, Pedro M. Raposeiro, Vítor Gonçalves, Maria G. Antoniou, Nikoletta Tsiarta, Valerie McCarthy, Victor C. Perello, Tõnu Feldmann, Alo Laas, Kristel Panksep, Lea Tuvikene, Ilona Gągała, Joanna Mankiewicz-Boczek, Meral Apaydın Yağcı, Şakir Çınar, Kadir Çapkın, Abdülkadir Yağcı, Mehmet Cesur, Fuat Bilgin, Cafer Bulut, Rahmi Uysal, Ulrike Obertegger, Bruno Adriano, Giovanna Flaim, Nico Salmaso, Leonardo Cerasino, Jessica Richardson, P. Visser, Jolanda M. H. Verspagen, Tünay Karan, Elif Neyran Soylu, Faruk Maraşlıoğlu, Agnieszka Napiórkowska‐Krzebietke, Agnieszka Ochocka, Agnieszka Pasztaleniec, Ana Maria Antão-Geraldes, Vı́tor Vasconcelos, João Morais, Micaela Vale, Latife Köker, Reyhan Akçaalan, Meriç Albay, Dubravka Špoljarić Maronić, Filip Stević, Tanja Žuna Pfeiffer, Jérémy Fonvielle, Dietmar Straile, Karl‐Otto Rothhaupt, Lars‐Anders Hansson, Pablo Urrutia‐Cordero, Luděk Bláha, Rodan Geriš, Markéta Fránková, Mehmet Ali Turan Koçer, Mehmet Tahir, Špela Remec-Rekar, Tina Eleršek, Theodoros M. Triantis, Sevasti‐Kiriaki Zervou, Anastasia Hiskia, Sigrid Haande, Birger Skjelbred, Beata Mądrecka, Hana Nemova, Iveta Drastichova, Lucia Chomova, Christine Edwards, Tuğba Ongun Sevi̇ndi̇k, Hatice Tunca, Burçin Önem, Boris Aleksovski, Svetislav Krstić, Itana Bokan Vucelić, Lidia Nawrocka, Pauliina Salmi, Danielle Machado-Vieira, Alinne Gurjão de Oliveira, Jordi Delgado‐Martín, David Granado García, Jose Luís Cereijo, Joan Gomà, Mari Carmen Trapote, Teresa Vegas-Vilarrúbia, Biel Obrador, Magdalena Grabowska, Maciej Karpowicz, Damian Chmura, Bárbara Úbeda, J. A. Gálvez, Arda Özen, Kirsten Christoffersen, Trine Perlt Warming, Justyna Kobos, Hanna Mazur‐Marzec, Carmen Pérez‐Martínez, Eloísa Ramos–Rodríguez, Лаури Арвола, Pablo Alcaraz-Párraga, Magdalena Toporowska, Barbara Pawlik‐Skowrońska, Michał Niedźwiecki, Wojciech Pęczuła, Manel Leira, Armand Hernández, Enrique Moreno-Ostos, José María Blanco, Valeriano Rodrı́guez, Jorge Juan Montes-Pérez, Roberto L. Palomino, Estela Rodríguez-Pérez, Rafael Carballeira, Antonio Camacho, Antonio Picazo, Carlos Rochera, Anna C. Santamans, Carmen Ferriol, Susana Romo, Juan M. Soria, Julita Dunalska, Justyna Sieńska, Daniel Szymański, Marek Kruk, Iwona Kostrzewska-Szlakowska, Iwona Jasser, Petar Žutinić, Marija Gligora Udovič, Anđelka Plenković-Moraj, Magdalena Frąk, Agnieszka Bańkowska-Sobczak, Michał Wasilewicz, Korhan Özkan, Valentini Maliaka, Kersti Kangro, Hans‐Peter Grossart, Hans W. Paerl, Cayelan C. Carey, Bas W. Ibelings
Software Mentions: 3
Published: over 8 years ago

10.1007/s10531-017-1334-8

A pan-neotropical analysis of hunting preferences
Cited by: 25
Author(s): Ciara Stafford, Richard F. Preziosi, William I. Sellers
Software Mentions: 3
Published: over 9 years ago

10.1186/s40168-020-0787-2

Linking belowground microbial network changes to different tolerance level towards Verticillium wilt of olive
Cited by: 57
Author(s): Antonio José Fernández-González, Martina Cardoni, Carmen Gómez-Lama Cabanás, Antonio Valverde-Corredor, Pablo J. Villadas, Manuel Fernández‐López, Jesús Mercado‐Blanco
Software Mentions: 3
Published: over 6 years ago

10.1186/s40168-020-00941-7

Antimicrobial use and production system shape the fecal, environmental, and slurry resistomes of pig farms
Cited by: 33
Author(s): Óscar Mencía‐Ares, Raúl Cabrera‐Rubio, José F. Cobo‐Díaz, Avelino Álvarez‐Ordóñez, Manuel Gómez‐García, Héctor Puente, Paul D. Cotter, Fiona Crispie, Ana Carvajal, Pedro Rubio, Héctor Argüello
Software Mentions: 3
Published: almost 6 years ago

10.3389/fmicb.2021.715241

Synbiotics Containing Nanoprebiotics: A Novel Therapeutic Strategy to Restore Gut Dysbiosis
Cited by: 2
Author(s): Liang Hong, Sang-Mok Lee, Whee‐Soo Kim, Yun‐Jaie Choi, Seo-Ho Oh, Yuling Li, Sun-Hye Choi, Chung‐Chih Wu, Eunkyoung Jung, Seoung-Hun Kang, Chong‐Su Cho
Software Mentions: 3
Published: about 5 years ago

10.3389/fmicb.2020.00069

Oral Administration of Heat-Treated Lactobacilli Modifies the Murine Microbiome and Reduces Citrobacter Induced Colitis
Cited by: 18
Author(s): Alicja K. Warda, Pedro H. de Almeida Bettio, Cara M. Hueston, Giulio Di Benedetto, Adam G. Clooney, Colin Hill
Software Mentions: 3
Published: over 6 years ago

10.1186/s13024-021-00427-6

Relationships of gut microbiota, short-chain fatty acids, inflammation, and the gut barrier in Parkinson’s disease
Cited by: 170
Author(s): Velma Aho, Madelyn C. Houser, Pedro Pereira, Jianjun Chang, Knut Rudi, Lars Paulín, Vicki Hertzberg, Petri Auvinen, Malú G. Tansey, Filip Scheperjans
Software Mentions: 3
Published: over 5 years ago

10.1002/mds.27105

The nasal and gut microbiome in Parkinson's disease and idiopathic rapid eye movement sleep behavior disorder
Cited by: 384
Author(s): Anna Heintz‐Buschart, Urvashi Pandey, Tamara Wicke, Friederike Sixel‐Döring, Annette Janzen, Elisabeth Sittig-Wiegand, Claudia Trenkwalder, Wolfgang H. Oertel, Brit Mollenhauer, Paul Wilmes
Software Mentions: 3
Published: about 9 years ago

10.1186/s40462-021-00279-1

Simultaneous GPS-tracking of parents reveals a similar parental investment within pairs, but no immediate co-adjustment on a trip-to-trip basis
Cited by: 5
Author(s): Marwa M. Kavelaars, Jeroen Baert, Jolien Van Malderen, Eric Stienen, Judy Shamoun‐Baranes, Luc Lens, Wendt Müller
Software Mentions: 3
Published: about 5 years ago

10.1186/s40462-021-00261-x

Foraging conditions for breeding penguins improve with distance from colony and progression of the breeding season at the South Orkney Islands
Cited by: 7
Author(s): Jessica Ann Phillips, Annette L. Fayet, Tim Guilford, Fabrizio Manco, Victoria Warwick-Evans, Philip N. Trathan
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2020.00518

Depth Influences Symbiodiniaceae Associations Among Montastraea cavernosa Corals on the Belize Barrier Reef
Cited by: 24
Author(s): Ryan J. Eckert, Ashley M Reaume, Alexis B. Sturm, Michael S. Studivan, Joshua D. Voss
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2015.01537

Microbial Community Structure in the Rhizosphere of Rice Plants
Cited by: 118
Author(s): Björn Breidenbach, Judith Pump, Marc G. Dumont
Software Mentions: 3
Published: over 10 years ago

10.1007/s10519-017-9850-6

Pleiotropic Effects of DDT Resistance on Male Size and Behaviour
Cited by: 19
Author(s): Wayne G. Rostant, Jemima Bowyer, Jack Coupland, James Facey, David J. Hosken, Nina Wedell
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-021-88784-6

Long term crop rotation effect on subsequent soybean yield explained by soil and root-associated microbiomes and soil health indicators
Cited by: 20
Author(s): Achal Neupane, Izzet Bulbul, Ziyi Wang, R. Michael Lehman, Emerson D. Nafziger, Shin-Yi Lee Marzano
Software Mentions: 3
Published: over 5 years ago

10.1007/s00572-017-0788-6

Root-associated fungal communities in three Pyroleae species and their mycobiont sharing with surrounding trees in subalpine coniferous forests on Mount Fuji, Japan
Cited by: 4
Author(s): Shuzheng Jia, Takashi Nakano, Masahira Hattori, Kazuhide Nara
Software Mentions: 3
Published: about 9 years ago

10.3390/ani11051335

Bacillus Subtilis 29784 as a Feed Additive for Broilers Shifts the Intestinal Microbial Composition and Supports the Production of Hypoxanthine and Nicotinic Acid
Cited by: 11
Author(s): Pearl Choi, Lamya Rhayat, Eric Pinloche, Estelle Devillard, Ellen De Paepe, Lynn Vanhaecke, Freddy Haesebrouck, Richard Ducatelle, Filip Van Immerseel, Evy Goossens
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-87971-9

Correspondence analysis, spectral clustering and graph embedding: applications to ecology and economic complexity
Cited by: 14
Author(s): Alje van Dam, Marcel Dekker, Ignacio Morales‐Castilla, Miguel Á. Rodrı́guez, David Wichmann, Mara Baudena
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0178755

Unraveling the environmental and anthropogenic drivers of bacterial community changes in the Estuary of Bilbao and its tributaries
Cited by: 29
Author(s): Mikel Aguirre, David Abad, Aitor Albaina, Lauren Cralle, María Soledad Goñi-Urriza, Andone Estonba, Iratxe Zarraonaindia
Software Mentions: 3
Published: over 9 years ago

10.3389/fmicb.2014.00531

Phylogeny and phylogeography of functional genes shared among seven terrestrial subsurface metagenomes reveal N-cycling and microbial evolutionary relationships
Cited by: 58
Author(s): Maggie C. Y. Lau, Connor Cameron, Cara Magnabosco, C. Titus Brown, Faye Schilkey, Sharon L. Grim, Sarah Hendrickson, Michael J. Pullin, Barbara Sherwood Lollar, Esta van Heerden, Thomas L. Kieft, Tullis C. Onstott
Software Mentions: 3
Published: almost 12 years ago

10.1186/s13567-019-0633-3

In-feed resin acids reduce matrix metalloproteinase activity in the ileal mucosa of healthy broilers without inducing major effects on the gut microbiota
Cited by: 22
Author(s): Manuel A. Aguirre, Juhani Vuorenmaa, Eija Valkonen, Hannele Kettunen, Chana Callens, Freddy Haesebrouck, Richard Ducatelle, Filip Van Immerseel, Evy Goossens
Software Mentions: 3
Published: over 7 years ago

10.1186/s12985-018-0992-9

Geographical distribution and relative risk of Anjozorobe virus (Thailand orthohantavirus) infection in black rats (Rattus rattus) in Madagascar
Cited by: 15
Author(s): Vololoniaina Raharinosy, Marie-Marie Olive, Fehivola Mandanirina Andriamiarimanana, Soa Fy Andriamandimby, Jean-Pierre Ravalohery, Seta Andriamamonjy, Claudia Filippone, Danielle Rakoto, Sandra Telfer, Jean‐Michel Heraud
Software Mentions: 3
Published: over 8 years ago

10.3389/fmicb.2020.00796

Biotic and Environmental Drivers of Plant Microbiomes Across a Permafrost Thaw Gradient
Cited by: 20
Author(s): Moira Hough, Amelia McClure, Benjamin Bolduc, Ellen Dorrepaal, S. R. Saleska, Vanja Klepac‐Ceraj, V. I. Rich
Software Mentions: 3
Published: over 6 years ago

10.1093/ve/veab005

Virome composition in marine fish revealed by meta-transcriptomics
Cited by: 48
Author(s): Jemma L. Geoghegan, Francesca Di Giallonardo, Michelle Wille, Ayda Susana Ortiz-Báez, Vincenzo A Costa, Timothy M. Ghaly, Jonathon C O Mifsud, Olivia M. H. Turnbull, David R. Bellwood, Jane E. Williamson, Edward C. Holmes
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-87977-3

Environmental factors shape the epiphytic bacterial communities of Gracilariopsis lemaneiformis
Cited by: 16
Author(s): Pengbing Pei, Muhammad Aslam, Hong Du, Honghao Liang, Wu Hui, Xiaojuan Liu, Weizhou Chen
Software Mentions: 3
Published: over 5 years ago

10.3390/v9090238

The Response of Heterotrophic Prokaryote and Viral Communities to Labile Organic Carbon Inputs Is Controlled by the Predator Food Chain Structure
Cited by: 13
Author(s): Ruth‐Anne Sandaa, Bernadette Pree, Aud Larsen, Selina Våge, Birte Töpper, Joachim Töpper, Runar Thyrhaug, T. Frede Thingstad
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.pone.0192386

Geographical and environmental determinants of the genetic structure of wild barley in southeastern Anatolia
Cited by: 6
Author(s): Reza Pournosrat, Selma Kaya, Salar Shaaf, Benjamin Kilian, Hakan Özkan
Software Mentions: 3
Published: over 8 years ago

10.3390/v11040347

Dynamics of Bacterial and Viral Communities in Paddy Soil with Irrigation and Urea Application
Cited by: 15
Author(s): Yuting Li, Hao Sun, Wei Yang, Guanxiong Chen, Xu Hui
Software Mentions: 3
Published: over 7 years ago

10.3390/v11090792

Metagenomic Analysis of Virus Diversity and Relative Abundance in a Eutrophic Freshwater Harbour
Cited by: 20
Author(s): Christine N. Palermo, Roberta R. Fulthorpe, Rosemary Saati, Steven M. Short
Software Mentions: 3
Published: about 7 years ago

10.3390/v11100903

Red deer (Cervus elaphus) Did Not Play the Role of Maintenance Host for Bluetongue Virus in France: The Burden of Proof by Long-Term Wildlife Monitoring and Culicoides Snapshots
Cited by: 10
Author(s): Sophie Rossi, Thomas Balenghien, Cyril Viarouge, Eva Faure, Gina Zanella, Corinne Sailleau, Bruno Mathieu, Jean Claude Delécolle, Camille Ninio, Claire Garros, Laëtitia Gardès, Christophe Tholoniat, Agnès Ariston, D. Gauthier, Stevan Mondoloni, Aurélie Barboiron, Maryline Pellerin, P. Gibert, Corinne Novella, Stéphane Barbier, Etienne Guillaumat, Stéphan Zientara, Damien Vitour, Emmanuel Bréard
Software Mentions: 3
Published: almost 7 years ago

10.3389/fmicb.2019.00505

Belowground Consequences of Intracontinental Range-Expanding Plants and Related Natives in Novel Environments
Cited by: 4
Author(s): Marta Manrubia, L. Basten Snoek, Carolin Weser, G. F. Veen, Wim H. van der Putten
Software Mentions: 3
Published: over 7 years ago

10.3389/fmicb.2021.643945

Evaluation of Three Prokaryote Primers for Identification of Prokaryote Community Structure and Their Abode Preference in Three Distinct Wetland Ecosystems
Cited by: 2
Author(s): Kavita Kumari, Malay Naskar, Md. Aftabuddin, Soma Das Sarkar, Bandana Das Ghosh, Uttam Kumar Sarkar, Subir Nag, Chayna Jana, Basanta Kumar Das
Software Mentions: 3
Published: about 5 years ago

10.3390/v13071291

Fishing for the Virome of Tropical Tuna
Cited by: 5
Author(s): Elsa Gadoin, Christelle Desnues, Sonia Monteil-Bouchard, Thierry Bouvier, Jean‐Christophe Auguet, Emmanuelle Roque D’Orbcastel, Yvan Bettarel
Software Mentions: 3
Published: about 5 years ago

10.1007/s00442-018-4294-0

Global patterns in the metacommunity structuring of lake macrophytes: regional variations and driving factors
Cited by: 48
Author(s): Janne Alahuhta, Marja Lindholm, Claudia Petean Bove, Eglantine Chappuis, J. S. Clayton, Mary de Winton, Tõnu Feldmann, Frauke Ecke, Esperança Gacia, Patrick Grillas, Mark V. Hoyer, Lucinda B. Johnson, Agnieszka Kolada, Sarian Kosten, Torben L. Lauridsen, Balázs András Lukács, Marit Mjelde, Roger Paulo Mormul, Laïla Rhazi, Mouhssine Rhazi, Laura Sass, Martin Søndergaard, Jun Xu, Jani Heino
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41598-021-87623-y

Land use in urban areas impacts the composition of soil bacterial communities involved in nitrogen cycling. A case study from Lefkosia (Nicosia) Cyprus
Cited by: 11
Author(s): Coralea Stephanou, Michalis Omirou, Laurent Philippot, Andreas M. Zissimos, Irene C. Christoforou, Slave Trajanoski, Anastasis Oulas, Ioannis M. Ioannides
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-87017-0

The larval environment strongly influences the bacterial communities of Aedes triseriatus and Aedes japonicus (Diptera: Culicidae)
Cited by: 6
Author(s): Elijah O. Juma, Brian F. Allan, Chang‐Hyun Kim, Chris Stone, Christopher A. Dunlap, Ephantus J. Muturi
Software Mentions: 3
Published: over 5 years ago

10.3897/zookeys.100.1427

Habitat disturbance and hydrological parameters determine the body size and reproduction strategy of alluvial ground beetles
Cited by: 27
Author(s): Michael Gerisch
Software Mentions: 3
Published: over 15 years ago

10.3390/toxins12110728

Diversity Assessment of Toxic Cyanobacterial Blooms during Oxidation
Cited by: 20
Author(s): Saber Moradinejad, Hana Trigui, Juan Maldonado, B. Jesse Shapiro, Yves Terrat, Arash Zamyadi, Sarah Dorner, Michèle Prévost
Software Mentions: 3
Published: almost 6 years ago

10.3389/fmicb.2020.596472

Effect of Two Different Sugarcane Cultivars on Rhizosphere Bacterial Communities of Sugarcane and Soybean Upon Intercropping
Cited by: 22
Author(s): Yue Liu, Hao Yang, Qi Liu, Xue Zhao, Sasa Xie, Ziting Wang, Ronghui Wen, Muqing Zhang, Baoshan Chen
Software Mentions: 3
Published: over 5 years ago

10.1007/s00442-017-3921-5

Nitrogen effects on the pelagic food web are modified by dissolved organic carbon
Cited by: 8
Author(s): Anne Deininger, Carolyn Faithfull, Ann‐Kristin Bergström
Software Mentions: 3
Published: about 9 years ago

10.1186/s12917-020-02688-7

Transition of microbiota in chicken cecal droppings from commercial broiler farms
Cited by: 10
Author(s): Nachiko Takeshita, Takayasu Watanabe, Kasumi Ishida-Kuroki, Tsutomu Sekizaki
Software Mentions: 3
Published: over 5 years ago

10.1186/s13568-021-01240-6

Influence of the densities and nutritional components of bacterial colonies on the culture-enriched gut bacterial community structure
Cited by: 2
Author(s): Yanrong Gu, Dong Yan, Minna Wu, Min Li, Puze Li, Jingjing Wang, Yahan Chang, Fan Yang, Shaojun Di, Shijun Ni, Mengjie Yang, Jieyu Liu
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-019-56977-9

Defining the root endosphere and rhizosphere microbiomes from the World Olive Germplasm Collection
Cited by: 56
Author(s): Antonio José Fernández-González, Pablo J. Villadas, Carmen Gómez-Lama Cabanás, Antonio Valverde-Corredor, Angjelina Belaj, Jesús Mercado‐Blanco, Manuel Fernández‐López
Software Mentions: 3
Published: over 6 years ago

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