cran: vegan | Projects | Ecosyste.ms: Papers

10.7717/peerj.9538

A comparison of lodgepole and spruce needle chemistry impacts on terrestrial biogeochemical processes during isolated decomposition
Cited by: 5
Author(s): Laura Leonard, Kristin M. Mikkelson, Zhao Hao, Eoin L. Brodie, Kenneth H. Williams, Jonathan O. Sharp
Software Mentions: 3
Published: about 6 years ago

10.7717/peerj.3532

Fungi associated with mesophotic macroalgae from the ‘Au‘au Channel, west Maui are differentiated by host and overlap terrestrial communities
Cited by: 23
Author(s): Benjamin J. Wainwright, Geoffrey Zahn, Heather L. Spalding, Alison R. Sherwood, Celia M. Smith, Anthony S. Amend
Software Mentions: 3
Published: about 9 years ago

10.7717/peerj.8147

Accumulation of di-2-ethylhexyl phthalate from polyvinyl chloride flooring into settled house dust and the effect on the bacterial community
Cited by: 6
Author(s): Samantha Velazquez, Chenyang Bi, Jeff Kline, Susie Nunez, Rich Corsi, Ying Xu, Suzanne L. Ishaq
Software Mentions: 3
Published: almost 7 years ago

10.7717/peerj.5014

Comparison of cryptobenthic reef fish communities among microhabitats in the Red Sea
Cited by: 14
Author(s): Emily Troyer, Darren J. Coker, Michael L. Berumen
Software Mentions: 3
Published: over 8 years ago

10.7717/peerj.8869

A halo of reduced dinoflagellate abundances in and around eelgrass beds
Cited by: 8
Author(s): Emily Jacobs-Palmer, Ramón Gallego, Ana Ramón‐Laca, Emily Kunselman, Kelly Cribari, Micah Horwith, Ryan P. Kelly
Software Mentions: 3
Published: over 6 years ago

10.7717/peerj.2048

Temporal changes in the structure of a plant-frugivore network are influenced by bird migration and fruit availability
Cited by: 42
Author(s): Michelle Ramos‐Robles, Ellen Andresen, Cecilia Díaz‐Castelazo
Software Mentions: 3
Published: over 10 years ago

10.7717/peerj.6570

PCR effects of melting temperature adjustment of individual primers in degenerate primer pools
Cited by: 3
Author(s): Ankur Naqib, Trisha Jeon, Kevin Kunstman, Weihua Wang, Yiding Shen, Dagmar Sweeney, Marieta Hyde, Stefan J. Green
Software Mentions: 3
Published: over 7 years ago

10.7717/peerj.8424

Airborne microbial biodiversity and seasonality in Northern and Southern Sweden
Cited by: 20
Author(s): Edvin Karlsson, Anna-Mia Johansson, Jon Ahlinder, Moa J. Lundkvist, Navinder J. Singh, Tomas Brodin, Mats Forsman, Per Stenberg
Software Mentions: 3
Published: over 6 years ago

10.7717/peerj.4135

Multi-scale and multi-site resampling of a study area in spatial genetics: implications for flying insect species
Cited by: 5
Author(s): Julien Haran, Jean‐Pierre Rossi, J. A. Pajares, Luís Bonifácio, Pedro Naves, Alain Roques, Géraldine Roux
Software Mentions: 3
Published: almost 9 years ago

10.7717/peerj.1491

Metagenomic and satellite analyses of red snow in the Russian Arctic
Cited by: 27
Author(s): Nao Hisakawa, Steven D. Quistad, Eric R. Hester, Daria Martynova, Heather Maughan, Enric Sala, Maria Gavrilo, Forest Rohwer
Software Mentions: 3
Published: almost 11 years ago

10.7717/peerj.5329

Genetic diversity of Microsporidia in the circulatory system of endemic amphipods from different locations and depths of ancient Lake Baikal
Cited by: 11
Author(s): Mariya Dimova, Ekaterina Madyarova, Anton Gurkov, Polina Drozdova, Yulia Lubyaga, Elizaveta Kondrateva, R. V. Adelshin, Maxim A. Timofeyev
Software Mentions: 3
Published: about 8 years ago

10.7717/peerj.6471

A simulation framework for evaluating multi-stage sampling designs in populations with spatially structured traits
Cited by: 4
Author(s): Patricia Puerta, Lorenzo Ciannelli, Becky Johnson
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0210321

Population genetic structure of the Mediterranean horseshoe bat Rhinolophus euryale in the central Balkans
Cited by: 10
Author(s): İvana Budinski, Jelena Blagojević, Vladimir Jovanović, Branka Pejić, Tanja Adnađević, Milan Paunović, Mladen Vujošević
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0149564

Characterization of the Gut Microbial Community of Obese Patients Following a Weight-Loss Intervention Using Whole Metagenome Shotgun Sequencing
Cited by: 197
Author(s): Sandrine Louis, Rewati-Mukund Tappu, Antje Damms-Machado, Daniel H. Huson, Stephan C. Bischoff
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0078248

Sharing of Diverse Mycorrhizal and Root-Endophytic Fungi among Plant Species in an Oak-Dominated Cool–Temperate Forest
Cited by: 63
Author(s): Hirokazu Toju, Satoshi Yamamoto, Hirotoshi Sato, Akifumi S. Tanabe
Software Mentions: 3
Published: almost 13 years ago

10.1371/journal.pone.0079035

Microbial Community Functional Change during Vertebrate Carrion Decomposition
Cited by: 132
Author(s): Jennifer L. Pechal, Tawni L. Crippen, Aaron M. Tarone, A. J. Lewis, Jeffery K. Tomberlin, M. Eric Benbow
Software Mentions: 3
Published: almost 13 years ago

10.1371/journal.pone.0150884

The Switch from Low-Pressure Sodium to Light Emitting Diodes Does Not Affect Bat Activity at Street Lights
Cited by: 29
Author(s): Elizabeth G. Rowse, Stephen Harris, Gareth Jones
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0022972

Watershed Urbanization Alters the Composition and Function of Stream Bacterial Communities
Cited by: 53
Author(s): Si-Yi Wang, Elizabeth B. Sudduth, Matthew D. Wallenstein, Justin P. Wright, Emily S. Bernhardt
Software Mentions: 3
Published: about 15 years ago

10.1371/journal.pone.0199093

Spatial distribution patterns of soil mite communities and their relationships with edaphic factors in a 30-year tillage cornfield in northeast China
Cited by: 5
Author(s): Jie Liu, Meixiang Gao, Yuxi Guo, Dong Liu, Xinyu Zhu, Donghui Wu
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pone.0026556

Differences among Major Taxa in the Extent of Ecological Knowledge across Four Major Ecosystems
Cited by: 23
Author(s): Rebecca Fisher, Nancy Knowlton, Russell E. Brainard, M. Julian Caley
Software Mentions: 3
Published: almost 15 years ago

10.1371/journal.pone.0248806

Soil bacterial communities and their associated functions for forest restoration on a limestone mine in northern Thailand
Cited by: 11
Author(s): Chakriya Sansupa, Witoon Purahong, Tesfaye Wubet, Pimonrat Tiansawat, Wasu Pathom-aree, Neung Teaumroong, Panuwan Chantawannakul, François Buscot, Stephen Elliott, Terd Disayathanoowat
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0245221

Pastoralism in the highest peaks: Role of the traditional grazing systems in maintaining biodiversity and ecosystem function in the alpine Himalaya
Cited by: 26
Author(s): Tenzing Ingty
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0235223

History of breastfeeding but not mode of delivery shapes the gut microbiome in childhood
Cited by: 13
Author(s): Camille C. Cioffi, Hannah F. Tavalire, Jenaè M. Neiderhiser, B. J. M. Bohannan, Leslie D. Leve
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0209102

Effects of macroconsumers on benthic communities: Rapid increases in dry-season accrual of calcium in a tropical karst stream
Cited by: 3
Author(s): Elaine Cristina Corrêa, Fábio de Oliveira Roque, Ryan M. Utz, Jonas de Sousa Correa, Franco L. Souza, Alan P. Covich
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0204445

Temporal dynamics in animal community assembly during post-logging succession in boreal forest
Cited by: 13
Author(s): Hélène Le Borgne, Christian Hébert, Angélique Dupuch, Orphé Bichet, David Pinaud, Daniel Fortin
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pone.0132538

Optimising Regionalisation Techniques: Identifying Centres of Endemism in the Extraordinarily Endemic-Rich Cape Floristic Region
Cited by: 19
Author(s): P. Bradshaw, Jonathan F. Colville, H. Peter Linder
Software Mentions: 3
Published: about 11 years ago

10.1371/journal.pone.0107534

Application of Ion Torrent Sequencing to the Assessment of the Effect of Alkali Ballast Water Treatment on Microbial Community Diversity
Cited by: 22
Author(s): Masanori Fujimoto, Gregory A Moyerbrailean, Sifat Noman, Jason P. Gizicki, Michal L. Ram, Phyllis A. Green, Jeffrey L. Ram
Software Mentions: 3
Published: about 12 years ago

10.1371/journal.pone.0019288

Outcomes of Brood Parasite–Host Interactions Mediated by Egg Matching: Common Cuckoos Cuculus canorus versus Fringilla Finches
Cited by: 17
Author(s): Johan Reinert Vikan, Frode Fossøy, Esa Huhta, Arne Moksnes, Eivin Røskaft, Bård G. Stokke
Software Mentions: 3
Published: over 15 years ago

10.1371/journal.pone.0123952

Are Protected Areas Required to Maintain Functional Diversity in Human-Modified Landscapes?
Cited by: 12
Author(s): H. Eden W. Cottee-Jones, Thomas J. Matthews, Tom P. Bregman, Maan Barua, Jatin Tamuly, Robert J. Whittaker
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0213823

Natural and human-impacted diversity of bryophytes along an elevational gradient on an oceanic island (La Palma, Canarias)
Cited by: 4
Author(s): Raquel Hernández‐Hernández, Jürgen Kluge, Claudine Ah‐Peng, Juana María González‐Mancebo
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0119741

Multivariate and Phylogenetic Analyses Assessing the Response of Bacterial Mat Communities from an Ancient Oligotrophic Aquatic Ecosystem to Different Scenarios of Long-Term Environmental Disturbance
Cited by: 12
Author(s): Silvia Pajares, Valeria Souza, Luis E. Eguiarte
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0138136

Habitat Selectivity and Reliance on Live Corals for Indo-Pacific Hawkfishes (Family: Cirrhitidae)
Cited by: 8
Author(s): Darren J. Coker, Andrew S. Hoey, Shaun K. Wilson, Martial Depczynski, Nicholas A. J. Graham, Jean‐Paul A. Hobbs, Thomas H. Holmes, Morgan S. Pratchett
Software Mentions: 3
Published: almost 11 years ago

10.1371/journal.pone.0227528

Morphologically and physiologically diverse fruits of two Lepidium species differ in allocation of glucosinolates into immature and mature seed and pericarp
Cited by: 3
Author(s): Said Mohammed, Samik Bhattacharya, Matthias Alexander Gesing, Katharina Klupsch, Günter Theißen, Klaus Mummenhoff, Caroline Müller
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0246266

A multi-omic investigation of male lower urinary tract symptoms: Potential role for JC virus
Cited by: 5
Author(s): Samuel Thomas, Christopher D. Dunn, Lewis J. Campbell, Douglas W. Strand, Chad M. Vezina, Dale E. Bjorling, Kristina L. Penniston, Lingjun Li, William A. Ricke, Tony L. Goldberg
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0256321

Environmental factors shaping bacterial, archaeal and fungal community structure in hydrothermal sediments of Guaymas Basin, Gulf of California
Cited by: 13
Author(s): Gustavo A. Ramírez, Paraskevi Mara, Taylor R. Sehein, Gunter Wegener, Christopher R. Chambers, Samantha B. Joye, Richard N. Peterson, Aurélie Philippe, Gaëtan Burgaud, Virginia P. Edgcomb, Andreas Teske
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0169805

Novel Analysis of Immune Cells from Nasal Microbiopsy Demonstrates Reliable, Reproducible Data for Immune Populations, and Superior Cytokine Detection Compared to Nasal Wash
Cited by: 47
Author(s): Simon P. Jochems, Katherine Piddock, Jamie Rylance, Hugh Adler, Beatriz F. Carniel, Andrea Collins, Jenna F. Gritzfeld, Carole A. Hancock, Helen Hill, Jesús Reiné, Alexandra L. Seddon, Carla Solórzano, Syba Sunny, A Zachary Trimble, A. Wright, Seher Zaidi, Stephen B. Gordon, Daniela M. Ferreira
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0080320

A Coexisting Fungal-Bacterial Community Stabilizes Soil Decomposition Activity in a Microcosm Experiment
Cited by: 19
Author(s): Masayuki Ushio, Takeshi Miki, Teri C. Balser
Software Mentions: 3
Published: almost 13 years ago

10.1371/journal.pone.0063570

Congruence and Diversity of Butterfly-Host Plant Associations at Higher Taxonomic Levels
Cited by: 37
Author(s): Ferrer-Paris José R., Ada Sánchez‐Mercado, Ángel L. Viloria, John S. Donaldson
Software Mentions: 3
Published: over 13 years ago

10.1371/journal.pone.0226432

An inter-island comparison of Darwin’s finches reveals the impact of habitat, host phylogeny, and island on the gut microbiome
Cited by: 13
Author(s): Wesley T. Loo, Rachael Y. Dudaniec, Sonia Kleindorfer, Colleen M. Cavanaugh
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0182054

Compositional changes in bee and wasp communities along Neotropical mountain altitudinal gradient
Cited by: 48
Author(s): Lucas Neves Perillo, Frederico de Siqueira Neves, Yasmine Antonini, Rogério Parentoni Martins
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.pone.0117210

Comparative Analysis of the Intestinal Bacterial and RNA Viral Communities from Sentinel Birds Placed on Selected Broiler Chicken Farms
Cited by: 31
Author(s): J. Michael Day, Brian B. Oakley, Bruce S. Seal, László Zsák
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0131075

Regional Variation in Parasite Species Richness and Abundance in the Introduced Range of the Invasive Lionfish, Pterois volitans
Cited by: 29
Author(s): Andrew J. Sellers, Gregory M. Ruiz, Brian Leung, Mark E. Torchin
Software Mentions: 3
Published: about 11 years ago

10.1371/journal.pone.0210031

Salmon increase forest bird abundance and diversity
Cited by: 16
Author(s): Marlene A. Wagner, John D. Reynolds
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0157513

Phenylketonuria and Gut Microbiota: A Controlled Study Based on Next-Generation Sequencing
Cited by: 41
Author(s): Felipe Pinheiro de Oliveira, Roberta Hack Mendes, Priscila Caroline Thiago Dobbler, Volker Mai, Victor Satler Pylro, Sheldon Waugh, Filippo Pinto e Vairo, Lı́lia Farret Refosco, Luiz Fernando Würdig Roesch, Ida Vanessa Döederlein Schwartz
Software Mentions: 3
Published: about 10 years ago

10.1371/journal.pone.0184486

Process-driven and biological characterisation and mapping of seabed habitats sensitive to trawling
Cited by: 19
Author(s): Aurélie Foveau, Sandrine Vaz, Nicolas Desroy, Vladimir E. Kostylev
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0155213

Rumen and Cecum Microbiomes in Reindeer (Rangifer tarandus tarandus) Are Changed in Response to a Lichen Diet and May Affect Enteric Methane Emissions
Cited by: 39
Author(s): Alejandro Salgado-Flores, Live Heldal Hagen, Suzanne L. Ishaq, Mirzaman Zamanzadeh, André‐Denis G. Wright, Phillip B. Pope, Monica A. Sundset
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0225636

Airway microbiome composition correlates with lung function and arterial stiffness in an age-dependent manner
Cited by: 22
Author(s): Shuen Yee Lee, Micheál Mac Aogáin, Kai Deng Fam, Kar Ling Chia, Nur A. 'tikah Binte Mohamed Ali, Margaret Mei Chan Yap, E. H. Yap, Sanjay H. Chotirmall, Chin Leong Lim
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0247966

Relationships between topographic factors, soil and plant communities in a dry Afromontane forest patches of Northwestern Ethiopia
Cited by: 12
Author(s): Liyew Birhanu, Tamrat Bekele, Binyam Tesfaw, Sebsebe Demissew
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0156425

Citizen Science and the Urban Ecology of Birds and Butterflies — A Systematic Review
Cited by: 29
Author(s): James Wang Wei, Benjamin P. Y.‐H. Lee, Low Bing Wen
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0219832

The role of inoculum dispersal and plant species identity in the assembly of leaf endophytic fungal communities
Cited by: 18
Author(s): Kevin D. Ricks, Roger T. Koide
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0213733

Michigan cohorts to determine associations of maternal pre-pregnancy body mass index with pregnancy and infant gastrointestinal microbial communities: Late pregnancy and early infancy
Cited by: 46
Author(s): Kameron Y. Sugino, Nigel Paneth, Sarah S. Comstock
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0205112

Evaluation of compost, vegetable and food waste as amendments to improve the composting of NaOH/NaClO-contaminated poultry manure
Cited by: 9
Author(s): Yuting Liu, Wenxia Wang, Jianqiang Xu, Xue Han, Kim Stanford, Tim A. McAllister, Weiping Xu
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pone.0142411

Cross-Scale Variation in Biodiversity-Environment Links Illustrated by Coastal Sandflat Communities
Cited by: 15
Author(s): Casper Kraan, Carsten F. Dormann, Barry L. Greenfield, Simon F. Thrush
Software Mentions: 3
Published: almost 11 years ago

10.1371/journal.pone.0189355

Ecological assessment of the marine ecosystems of Barbuda, West Indies: Using rapid scientific assessment to inform ocean zoning and fisheries management
Cited by: 5
Author(s): Benjamin I. Ruttenberg, Jennifer E. Caselle, Andy Estep, Ayana Elizabeth Johnson, Kristen L. Marhaver, Lee J. Richter, Stuart A. Sandin, Mark J. A. Vermeij, Jennifer E. Smith, David Grenda, Abigail Libbin Cannon
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0138785

Eggshell Types and Their Evolutionary Correlation with Life-History Strategies in Squamates
Cited by: 16
Author(s): Konstantin Hallmann, Eva Maria Griebeler
Software Mentions: 3
Published: almost 11 years ago

10.1371/journal.pone.0178467

High viral abundance as a consequence of low viral decay in the Baltic Sea redoxcline
Cited by: 11
Author(s): Nicole Köstner, Lisa Scharnreitner, Klaus Jürgens, Matthias Labrenz, Gerhard J. Herndl, Christian Winter
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0130931

Towards an Understanding of the Interactions between Freshwater Inflows and Phytoplankton Communities in a Subtropical Estuary in the Gulf of Mexico
Cited by: 48
Author(s): Samuel Dorado, Tyra Booe, Jamie L. Steichen, Alison McInnes, Rachel Windham, Alicia K. Shepard, A. Lucchese, H. Preischel, James L. Pinckney, Stephen E. Davis, Daniel L. Roelke, Antonietta Quigg
Software Mentions: 3
Published: about 11 years ago

10.1371/journal.pone.0210679

Fecal microbiota dysbiosis in macaques and humans within a shared environment
Cited by: 9
Author(s): Erica T. Grant, Randall C. Kyes, Pensri Kyes, Pauline Trinh, Vickie Ramirez, Tawatchai Tanee, Porntip Pinlaor, Rungtiwa Dangtakot, Peter Rabinowitz
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0158937

Contrasting Pollinators and Pollination in Native and Non-Native Regions of Highbush Blueberry Production
Cited by: 39
Author(s): Jason Gibbs, Elizabeth Elle, Kyle Bobiwash, Tiia Haapalainen, Rufus Isaacs
Software Mentions: 3
Published: about 10 years ago

10.1371/journal.pone.0033246

Effects of Frugivore Preferences and Habitat Heterogeneity on Seed Rain: A Multi-Scale Analysis
Cited by: 24
Author(s): Javier Rodríguez‐Pérez, Asier R. Larrinaga, Luis Santamarı́a
Software Mentions: 3
Published: over 14 years ago

10.1371/journal.pone.0135620

A Study of the Vaginal Microbiome in Healthy Canadian Women Utilizing cpn60-Based Molecular Profiling Reveals Distinct Gardnerella Subgroup Community State Types
Cited by: 90
Author(s): Arianne Albert, Bonnie Chaban, Emily Wagner, John Schellenberg, Matthew G. Links, Julie van Schalkwyk, Gregor Reid, Sean M. Hemmingsen, Janet E. Hill, Deborah Money
Software Mentions: 3
Published: about 11 years ago

10.1371/journal.pone.0231553

Elevation and latitude drives structure and tree species composition in Andean forests: Results from a large-scale plot network
Cited by: 47
Author(s): Agustina Malizia, Cecilia Blundo, Julieta Carilla, Oriana Osinaga Acosta, Francisco Cuesta, Álvaro Duque, Nikolay Aguirre, Zhofre Aguirre Mendoza, Michele Ataroff, Selene Báez, Marco Calderón-Loor, Leslie Cayola, Luis Cayuela, Sergio Javier Ceballos, Hugo Cedillo, W. Farfan Rios, Kenneth J. Feeley, Alfredo Fuentes, Luis E. Gámez, Ricardo Grau, Juergen Homeier, Oswaldo Jadán, Luis Daniel Llambí, María Isabel Loza Rivera, Manuel J. Macía, Yadvinder Malhi, Lucio R. Malizia, Manuel Peralvo, Esteban Pinto, Sebastián J. Tello, Miles R. Silman, Kenneth R. Young
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0149567

Diverse Effects of a Seven-Year Experimental Grassland Fragmentation on Major Invertebrate Groups
Cited by: 13
Author(s): Brigitte Braschler, Bruno Baur
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0215959

High school students’ knowledge of endangered fauna in the Brazilian Cerrado: A cross-species and spatial analysis
Cited by: 6
Author(s): Marcos Aurélio de Amorim Gomes, Tatiel Venâncio Gonçalves, Fabrício Barreto Teresa, Hélida Ferreira da Cunha, Flávia Pereira Lima, João Carlos Nabout
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0084572

Phyllostomid Bat Occurrence in Successional Stages of Neotropical Dry Forests
Cited by: 20
Author(s): Luis Daniel Ávila-Cabadilla, Kathryn E. Stoner, Jafet M. Nassar, Mário M. Espírito-Santo, Mariana Yolotl Álvarez-Añorve, Carla I. Aranguren, Mickaël Henry, José A. González‐Carcacía, Luiz Alberto Dolabela Falcão, Arturo Sánchez‐Azofeifa
Software Mentions: 3
Published: over 12 years ago

10.1371/journal.pone.0165472

Demographic Costs Associated with Differences in Habitat Space Occupancy
Cited by: 1
Author(s): Kelly A. Williams, Donald B. Miles
Software Mentions: 3
Published: almost 10 years ago

10.1371/journal.pone.0187575

Fungal communities in ancient peatlands developed from different periods in the Sanjiang Plain, China
Cited by: 17
Author(s): Zhenqing Zhang, Xue Zhou, Lei Tian, Lina Ma, Shasha Luo, Jianfeng Zhang, Xiujun Li, Chunjie Tian
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0118710

Multiple-Geographic-Scale Genetic Structure of Two Mangrove Tree Species: The Roles of Mating System, Hybridization, Limited Dispersal and Extrinsic Factors
Cited by: 61
Author(s): Gustavo Maruyama Mori, Maria Imaculada Zucchi, Anete Pereira de Souza
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0076382

A Multifactor Analysis of Fungal and Bacterial Community Structure in the Root Microbiome of Mature Populus deltoides Trees
Cited by: 224
Author(s): Migun Shakya, Neil Gottel, Hector F. Castro, Zamin K. Yang, Lee E. Gunter, Jessy Labbé, Wellington Muchero, Gregory Bonito, Rytas Vilgalys, Gerald A. Tuskan, Mircea Podar, Christopher W. Schadt
Software Mentions: 3
Published: almost 13 years ago

10.1371/journal.pone.0112763

Bacterial Endophytic Communities in the Grapevine Depend on Pest Management
Cited by: 101
Author(s): A. Campisano, Livio Antonielli, Michael Pancher, Sohail Yousaf, Massimo Pindo, I. Pertot
Software Mentions: 3
Published: almost 12 years ago

10.1371/journal.pone.0033065

Plant Diversity Changes during the Postglacial in East Asia: Insights from Forest Refugia on Halla Volcano, Jeju Island
Cited by: 29
Author(s): Jiří Doležal, Jan Altman, Martin Kopecký, Tomáš Černý, Štěpán Janeček, Michael Bartoš, Petr Petřík, Miroslav Šrůtek, Jan Lepš, Jong‐Suk Song
Software Mentions: 3
Published: over 14 years ago

10.1371/journal.pone.0145575

Effects of Fertilization and Sampling Time on Composition and Diversity of Entire and Active Bacterial Communities in German Grassland Soils
Cited by: 35
Author(s): Sarah Herzog, Franziska Wemheuer, Bernd Wemheuer, Rolf Daniel
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0111774

Spillover Effects of a Community-Managed Marine Reserve
Cited by: 32
Author(s): Isabel Marques da Silva, Nicholas M. Hill, Hideyasu Shimadzu, Amadeu M.V.M. Soares, María Dornelas
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0191268

Yearly fluctuations of flower landscape in a Mediterranean scrubland: Consequences for floral resource availability
Cited by: 24
Author(s): Víctor Flo, Jordi Bosch, Xavier Arnán, Clara Primante, Ana M. Martín González, Helena Barril-Graells, Anselm Rodrigo
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0040059

Exposure of Soil Microbial Communities to Chromium and Arsenic Alters Their Diversity and Structure
Cited by: 223
Author(s): Cody S. Sheik, Tyler W. Mitchell, Fariha Zakria Rizvi, Yasir Rehman, Muhammad Faisal, Shahida Hasnain, Michael J. McInerney, Lee R. Krumholz
Software Mentions: 3
Published: about 14 years ago

10.1371/journal.pone.0204253

Oral probiotic combination of Lactobacillus and Bifidobacterium alters the gastrointestinal microbiota during antibiotic treatment for Clostridium difficile infection
Cited by: 36
Author(s): Travis J. De Wolfe, Shoshannah Eggers, Anna Barker, Ashley E. Kates, Kimberly A. Dill‐McFarland, Garret Suen, Nasia Safdar
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pone.0110664

Soil Temperature Determines the Reaction of Olive Cultivars to Verticillium dahliae Pathotypes
Cited by: 29
Author(s): Rocío Calderón, Carlos Lucena, J. L. Trapero-Casas, Pablo J. Zarco‐Tejada, Juan A Navas‐Cortés
Software Mentions: 3
Published: almost 12 years ago

10.1371/journal.pone.0221828

Dietary inulin alters the gut microbiome, enhances systemic metabolism and reduces neuroinflammation in an APOE4 mouse model
Cited by: 73
Author(s): Jared D. Hoffman, Lucille M. Yanckello, George E. Chlipala, Tyler C. Hammond, Scott McCulloch, Ishita Parikh, Sydney Sun, Josh M. Morganti, Stefan J. Green, Ai-Ling Lin
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0101618

Honey Pollen: Using Melissopalynology to Understand Foraging Preferences of Bees in Tropical South India
Cited by: 42
Author(s): Raja Ponnuchamy, Vincent Bonhomme, S Prasad, Lipi Das, Prakash Patel, Cédric Gaucherel, A. Pragasam, K. Anupama
Software Mentions: 3
Published: about 12 years ago

10.1371/journal.pone.0223294

Distinctive tasks of different cyanobacteria and associated bacteria in carbon as well as nitrogen fixation and cycling in a late stage Baltic Sea bloom
Cited by: 13
Author(s): Falk Eigemann, Angela Vogts, Maren Voß, Luca Zoccarato, Heide N. Schulz-Vogt
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0185043

Persistence of marine fish environmental DNA and the influence of sunlight
Cited by: 84
Author(s): Elizabeth A. Andruszkiewicz, Lauren M. Sassoubre, Alexandria B. Boehm
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.pone.0086042

Integrating Stand and Soil Properties to Understand Foliar Nutrient Dynamics during Forest Succession Following Slash-and-Burn Agriculture in the Bolivian Amazon
Cited by: 10
Author(s): Eben N. Broadbent, Angélica M. Almeyda Zambrano, Gregory P. Asner, Marlene Soriano, Christopher B. Field, Harrison Ramos de Souza, Marielos Peña-Claros, Rachel I. Adams, Rodolfo Dirzo, Larry Giles
Software Mentions: 3
Published: over 12 years ago

10.1371/journal.pone.0215872

Incubation and grazing effects on spirotrich ciliate diversity inferred from molecular analyses of microcosm experiments
Cited by: 6
Author(s): Jean‐David Grattepanche, Doris L. Juarez, Cameah Corin Wood, George B. McManus, Laura A. Katz
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0011285

Characterization of Coastal Urban Watershed Bacterial Communities Leads to Alternative Community-Based Indicators
Cited by: 64
Author(s): Cindy H. Wu, Bram Sercu, Laurie C. Van De Werfhorst, Jakk Wong, Todd Z. DeSantis, Eoin L. Brodie, Terry C. Hazen, Patricia A. Holden, Gary L. Andersen
Software Mentions: 3
Published: about 16 years ago

10.1371/journal.pone.0228944

The influence of collection method on paleoecological datasets: In-place versus surface-collected fossil samples in the Pennsylvanian Finis Shale, Texas, USA
Cited by: 5
Author(s): Frank L. Forcino, Emily S. Stafford
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0122432

Poor Prospects for Avian Biodiversity in Amazonian Oil Palm
Cited by: 54
Author(s): Alexander Charles Lees, Nárgila Moura, Arlete Silva de Almeida, Ima Célia Guimarães Vieira
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0133501

Hotspots of Community Change: Temporal Dynamics Are Spatially Variable in Understory Plant Composition of a California Oak Woodland
Cited by: 3
Author(s): Erica Spotswood, James W. Bartolome, Barbara Allen-Díaz
Software Mentions: 3
Published: about 11 years ago

10.1371/journal.pone.0228561

Completing Linnaeus’s inventory of the Swedish insect fauna: Only 5,000 species left?
Cited by: 22
Author(s): Fredrik Ronquist, Mattias Forshage, Sibylle Häggqvist, Dave Karlsson, Rasmus Hovmöller, Johannes Bergsten, Kevin C. Holston, Tom Britton, Johan Abenius, B. Andersson, Peter Neerup Buhl, Carl-Cedric Coulianos, Arne Fjellberg, Carl‐Axel Gertsson, Sven Hellqvist, Mathias Jaschhof, Jostein Kjærandsen, Seraina Klopfstein, Sverre Kobro, Andrew D. Liston, Rudolf Meier, Marc A. A. Pollet, Matthias Riedel, Jindřích Roháček, Meike M. Schuppenhauer, Julia Stigenberg, Ingemar Struwe, Taeger Andreas, Sven-Olof Ulefors, Oleksandr Varga, Phil Withers, Ulf Gärdenfors
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0234431

Comparative analysis of viruses in four bee species collected from agricultural, urban, and natural landscapes
Cited by: 10
Author(s): Tuğçe Olgun, Sydney E. Everhart, Troy D. Anderson, Judy Wu‐Smart
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0039951

Effects of Eutrophication, Seasonality and Macrofouling on the Diversity of Bacterial Biofilms in Equatorial Coral Reefs
Cited by: 42
Author(s): Yvonne Sawall, Claudio Richter, Alban Ramette
Software Mentions: 3
Published: about 14 years ago

10.1371/journal.pone.0040425

The Cervical Microbiome over 7 Years and a Comparison of Methodologies for Its Characterization
Cited by: 92
Author(s): Benjamin Smith, Thomas McAndrew, Zigui Chen, Ariana Harari, David M. Barris, Viswanathan Shankar, Ana Cecilia Rodríguez, Phillip E. Castle, Rolando Herrero, Mark Schiffman, Robert D. Burk
Software Mentions: 3
Published: about 14 years ago

10.1371/journal.pone.0141752

Landscape Diversity and Crop Vigor Influence Biological Control of the Western Grape Leafhopper (E. elegantula Osborn) in Vineyards
Cited by: 13
Author(s): H. F. Wilson, Albie Miles, Kent M. Daane, Miguel A. Altieri
Software Mentions: 3
Published: almost 11 years ago

10.1371/journal.pone.0153661

Linking Native and Invader Traits Explains Native Spider Population Responses to Plant Invasion
Cited by: 5
Author(s): James W. Smith, Douglas J. Emlen, Dean E. Pearson
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0222080

Transcriptome divergence during leaf development in two contrasting switchgrass (Panicum virgatum L.) cultivars
Cited by: 8
Author(s): Nathan A. Palmer, R. V. Chowda-Reddy, Anthony A. Muhle, T. Satyanarayana, Gary Y. Yuen, Serge J. Edmé, Robert B. Mitchell, Gautam Sarath
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0090731

Seasonal Variation in Human Gut Microbiome Composition
Cited by: 225
Author(s): Emily Davenport, Orna Mizrahi-Man, Katelyn Michelini, Luis B. Barreiro, Carole Ober, Yoav Gilad
Software Mentions: 3
Published: over 12 years ago

10.1371/journal.pone.0165412

Remarkable Diversity and Prevalence of Dagger Nematodes of the Genus Xiphinema Cobb, 1913 (Nematoda: Longidoridae) in Olives Revealed by Integrative Approaches
Cited by: 19
Author(s): Antonio Archidona‐Yuste, Juan A Navas‐Cortés, Carolina Cantalapiedra‐Navarrete, Juan E. Palomares-Rius, Pablo Castillo
Software Mentions: 3
Published: almost 10 years ago

10.1371/journal.pone.0210542

Endophytic bacterial communities in peels and pulp of five root vegetables
Cited by: 20
Author(s): Viia Kõiv, Krõõt Arbo, Ülo Maiväli, Veljo Kisand, Märt Roosaare, Maido Remm, Tanel Tenson
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0222394

Gut microbiome diversity is associated with sleep physiology in humans
Cited by: 136
Author(s): Robert P. Smith, Cole G. Easson, Sarah M. Lyle, Ritishka Kapoor, Chase P. Donnelly, Eileen J. Davidson, Esha Parikh, Jose V. Lopez, Jaime L. Tartar
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0151744

Opposing Patterns of Seasonal Change in Functional and Phylogenetic Diversity of Tadpole Assemblages
Cited by: 18
Author(s): Axel Strauß, François Guilhaumon, Roger Daniel Randrianiaina, Katharina C. Wollenberg Valero, Miguel Vences, Julian Glos
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0135494

Characterization of the Intestinal Lactobacilli Community following Galactooligosaccharides and Polydextrose Supplementation in the Neonatal Piglet
Cited by: 19
Author(s): Jennifer L. Hoeflinger, Dimitri Kashtanov, Stephen B. Cox, Scot E. Dowd, Zeina E. Jouni, Sharon M. Donovan, Michael J. Miller
Software Mentions: 3
Published: about 11 years ago

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