cran: vegan | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0221361

Arsenic bioaccumulation in subarctic fishes of a mine-impacted bay on Great Slave Lake, Northwest Territories, Canada
Cited by: 14
Author(s): John Chételat, Peter A. Cott, Maikel Rosabal, Adam J. Houben, Christine McClelland, Elise Belle Rose, Marc Amyot
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0182533

A survey of the mycobiota associated with larvae of the black soldier fly (Hermetia illucens) reared for feed production
Cited by: 73
Author(s): Ilaria Varotto-Boccazzi, M. Ottoboni, Elena Martín, Francesco Comandatore, L. Vallone, Thomas Spranghers, Mia Eeckhout, Valeria Mereghetti, L. Pinotti, Sara Epis
Software Mentions: 3
Published: about 9 years ago

10.3390/ijms18081727

Spatial Distribution Patterns of Root-Associated Bacterial Communities Mediated by Root Exudates in Different Aged Ratooning Tea Monoculture Systems
Cited by: 54
Author(s): Yasir Arafat, Xiaoya Wei, Yuhang Jiang, Ting Chen, Hafiz Sohaib Ahmed Saqib, Shan Lin, Wenxiong Lin
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.pone.0054818

Organic Farming Favours Insect-Pollinated over Non-Insect Pollinated Forbs in Meadows and Wheat Fields
Cited by: 31
Author(s): Péter Batáry, Laura M. E. Sutcliffe, Carsten F. Dormann, Teja Tscharntke
Software Mentions: 3
Published: over 13 years ago

10.1371/journal.pone.0145575

Effects of Fertilization and Sampling Time on Composition and Diversity of Entire and Active Bacterial Communities in German Grassland Soils
Cited by: 35
Author(s): Sarah Herzog, Franziska Wemheuer, Bernd Wemheuer, Rolf Daniel
Software Mentions: 3
Published: over 10 years ago

10.3389/fmicb.2021.598180

Microbial Community Field Surveys Reveal Abundant Pseudomonas Population in Sorghum Rhizosphere Composed of Many Closely Related Phylotypes
Cited by: 14
Author(s): Dawn Chiniquy, Elle M. Barnes, Jizhong Zhou, Kyle Hartman, Xiaohui Li, Amy Sheflin, Allyn Pella, Ellen L. Marsh, Jessica E. Prenni, Adam M. Deutschbauer, Daniel P. Schachtman, Susannah G. Tringe
Software Mentions: 3
Published: over 5 years ago

10.1186/s12985-018-0992-9

Geographical distribution and relative risk of Anjozorobe virus (Thailand orthohantavirus) infection in black rats (Rattus rattus) in Madagascar
Cited by: 15
Author(s): Vololoniaina Raharinosy, Marie-Marie Olive, Fehivola Mandanirina Andriamiarimanana, Soa Fy Andriamandimby, Jean-Pierre Ravalohery, Seta Andriamamonjy, Claudia Filippone, Danielle Rakoto, Sandra Telfer, Jean‐Michel Heraud
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0181477

Comparative analysis of vaginal microbiota sampling using 16S rRNA gene analysis
Cited by: 44
Author(s): Seppo Virtanen, Ilkka Kalliala, Pekka Nieminen, Anne Salonen
Software Mentions: 3
Published: about 9 years ago

10.3389/fmicb.2019.00858

Atmospheric Deposition Impact on Bacterial Community Composition in the NW Mediterranean
Cited by: 13
Author(s): Isabel Marin-Beltran, Jürg Brendan Logue, Anders F. Andersson, Francesc Peters
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-019-43603-x

Karst dolines provide diverse microhabitats for different functional groups in multiple phyla
Cited by: 33
Author(s): Zoltán Bátori, András Vojtkó, István Maák, Gábor Lőrinczi, Tünde Farkas, Noémi Kántor, Eszter Tanács, Péter János Kiss, Orsolya Juhász, Gábor Módra, Csaba Tölgyesi, László Erdös, Dianne Joy Aguilon, Gunnar Keppel
Software Mentions: 3
Published: over 7 years ago

10.3897/zookeys.100.1427

Habitat disturbance and hydrological parameters determine the body size and reproduction strategy of alluvial ground beetles
Cited by: 27
Author(s): Michael Gerisch
Software Mentions: 3
Published: over 15 years ago

10.3389/fmicb.2015.00130

Evaluating variation in human gut microbiota profiles due to DNA extraction method and inter-subject differences
Cited by: 133
Author(s): Brett Wagner Mackenzie, David W. Waite, Michael W. Taylor
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0111774

Spillover Effects of a Community-Managed Marine Reserve
Cited by: 32
Author(s): Isabel Marques da Silva, Nicholas M. Hill, Hideyasu Shimadzu, Amadeu M.V.M. Soares, María Dornelas
Software Mentions: 3
Published: over 11 years ago

10.3389/fmicb.2019.02699

Temporal Stability of Bacterial Communities in Antarctic Sponges
Cited by: 19
Author(s): César Cárdenas, Alejandro Font, Georg Steinert, Rodolfo Rondon, Marcelo González-Aravena
Software Mentions: 3
Published: almost 7 years ago

10.3390/ijms19113351

Age- and Genotype-Specific Effects of the Angiotensin-Converting Enzyme Inhibitor Lisinopril on Mitochondrial and Metabolic Parameters in Drosophila melanogaster
Cited by: 14
Author(s): Karis A. Ederer, Kelly Jin, Sarah Bouslog, Lu Wang, Gregory S. Gorman, Glenn C. Rowe, Peter M. Abadir, Daniel Raftery, Douglas R. Moellering, Daniel Promislow, Patricia Jumbo-Lucioni, María De Luca
Software Mentions: 3
Published: almost 8 years ago

10.1038/s42003-020-01534-8

Temperature modulates stress response in mainstream anammox reactors
Cited by: 12
Author(s): Robert Niederdorfer, Damian Hausherr, Alejandro Palomo, Jing Wei, Paul Magyar, Barth F. Smets, Adriano Joss, Helmut Bürgmann
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2021.605285

Microbiome Analyses Demonstrate Specific Communities Within Five Shark Species
Cited by: 10
Author(s): Rachael Storo, Cole G. Easson, Mahmood S. Shivji, Jose V. Lopez
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-019-44157-8

Vaginal Microbiota Composition Correlates Between Pap Smear Microscopy and Next Generation Sequencing and Associates to Socioeconomic Status
Cited by: 27
Author(s): Seppo Virtanen, Tiina Rantsi, Anni Virtanen, Kaisa Kervinen, Pekka Nieminen, Ilkka Kalliala, Anne Salonen
Software Mentions: 3
Published: over 7 years ago

10.1002/ece3.7722

Animal‐borne video systems provide insight into the reproductive behavior of the Asian black bear
Cited by: 9
Author(s): Tomoko Naganuma, Mii Tanaka, Shiori Tezuka, Sam M. J. G. Steyaert, Kahoko Tochigi, Akino Inagaki, Hiroaki Myojo, Koji Yamazaki, Shinsuke Koike
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0033065

Plant Diversity Changes during the Postglacial in East Asia: Insights from Forest Refugia on Halla Volcano, Jeju Island
Cited by: 29
Author(s): Jiří Doležal, Jan Altman, Martin Kopecký, Tomáš Černý, Štěpán Janeček, Michael Bartoš, Petr Petřík, Miroslav Šrůtek, Jan Lepš, Jong‐Suk Song
Software Mentions: 3
Published: over 14 years ago

10.1371/journal.pone.0191268

Yearly fluctuations of flower landscape in a Mediterranean scrubland: Consequences for floral resource availability
Cited by: 24
Author(s): Víctor Flo, Jordi Bosch, Xavier Arnán, Clara Primante, Ana M. Martín González, Helena Barril-Graells, Anselm Rodrigo
Software Mentions: 3
Published: over 8 years ago

10.3389/fmicb.2019.00653

Benthic Diatom Communities in an Alpine River Impacted by Waste Water Treatment Effluents as Revealed Using DNA Metabarcoding
Cited by: 42
Author(s): Teofana Chonova, Rainer Kurmayer, Frédéric Rimet, Jérôme Labanowski, Valentin Vasselon, François Keck, Paul Illmer, Agnès Bouchez
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0161196

Expanding the UniFrac Toolbox
Cited by: 51
Author(s): Ruth G. Wong, Jia Rong Wu, Gregory B. Gloor
Software Mentions: 3
Published: about 10 years ago

10.3389/fmicb.2021.669442

Association and Occurrence of Bifidobacterial Phylotypes Between Breast Milk and Fecal Microbiomes in Mother–Infant Dyads During the First 2 Years of Life
Cited by: 11
Author(s): Wenli Yan, Baolong Luo, Xu-Yao Zhang, Yuwen Ni, Fengwei Tian
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0040059

Exposure of Soil Microbial Communities to Chromium and Arsenic Alters Their Diversity and Structure
Cited by: 223
Author(s): Cody S. Sheik, Tyler W. Mitchell, Fariha Zakria Rizvi, Yasir Rehman, Muhammad Faisal, Shahida Hasnain, Michael J. McInerney, Lee R. Krumholz
Software Mentions: 3
Published: about 14 years ago

10.3389/fmicb.2018.02360

Keystone Species in Pregnancy Gingivitis: A Snapshot of Oral Microbiome During Pregnancy and Postpartum Period
Cited by: 51
Author(s): Preethi Balan, Yap Seng Chong, Shivshankar Umashankar, Sanjay Swarup, Wong Mun Loke, Violeta Lopez, Hong He, Chaminda Jayampath Seneviratne
Software Mentions: 3
Published: almost 8 years ago

10.3389/fmicb.2020.538476

Aeolian Prokaryotic Communities of the Global Dust Belt Over the Red Sea
Cited by: 5
Author(s): Nojood Aalismail, Rubén Díaz‐Rúa, David Kamanda Ngugi, Michael Cusack, Carlos M. Duarte
Software Mentions: 3
Published: almost 6 years ago

10.7554/eLife.13720

Benefits of jasmonate-dependent defenses against vertebrate herbivores in nature
Cited by: 36
Author(s): Ricardo A. R. Machado, Mark S. McClure, Maxime Hervé, Ian Thomas Baldwin, Matthias Erb
Software Mentions: 3
Published: about 10 years ago

10.1038/s41598-019-55917-x

Testing for consistency in the impacts of a burrowing ecosystem engineer on soil and vegetation characteristics across biomes
Cited by: 9
Author(s): M.A. Louw, Natalie S. Haussmann, Peter C. le Roux
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0204253

Oral probiotic combination of Lactobacillus and Bifidobacterium alters the gastrointestinal microbiota during antibiotic treatment for Clostridium difficile infection
Cited by: 36
Author(s): Travis J. De Wolfe, Shoshannah Eggers, Anna Barker, Ashley E. Kates, Kimberly A. Dill‐McFarland, Garret Suen, Nasia Safdar
Software Mentions: 3
Published: almost 8 years ago

10.3390/s20010286

Classification of Sleep Apnea Severity by Electrocardiogram Monitoring Using a Novel Wearable Device
Cited by: 25
Author(s): Florent Baty, Maximilian Boesch, Sandra Widmer, Simon Annaheim, Piero Fontana, Martin Camenzind, René M. Rossi, Otto D. Schoch, Martin Brutsche
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2018.01139

Divergent Responses of the Diazotrophic Microbiome to Elevated CO2 in Two Rice Cultivars
Cited by: 19
Author(s): Yongjie Yu, Jianwei Zhang, Evangelos Petropoulos, Marcos Q Baluja, Chunmao Zhu, Jiang Zhu, Xiangui Lin, Youzhi Feng
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-019-55625-6

Succession of microbial populations and nitrogen-fixation associated with the biodegradation of sediment-oil-agglomerates buried in a Florida sandy beach
Cited by: 22
Author(s): Boryoung Shin, Ioana Bociu, Max Kolton, Markus Huettel, Joel E. Kostka
Software Mentions: 3
Published: almost 7 years ago

10.1002/ece3.429

Invasion history and demographic pattern of<i>Cryphonectria hypovirus 1</i>across European populations of the chestnut blight fungus
Cited by: 59
Author(s): Sarah Franziska Bryner, Daniel Rigling, Patrick C. Brunner
Software Mentions: 3
Published: almost 14 years ago

10.1371/journal.pone.0201406

Phenotypic plasticity in specialists: How long-spined larval Sympetrum depressiusculum (Odonata: Libellulidae) responds to combined predator cues
Cited by: 2
Author(s): Hana Šigutová, Martin Šigut, Aleš Dolný
Software Mentions: 3
Published: about 8 years ago

10.3389/fmicb.2018.03208

Rapid Succession of Actively Transcribing Denitrifier Populations in Agricultural Soil During an Anoxic Spell
Cited by: 11
Author(s): Binbin Liu, Xiaojun Zhang, Lars R. Bakken, Lars-Gustav Snipen, Åsa Frostegård
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0110664

Soil Temperature Determines the Reaction of Olive Cultivars to Verticillium dahliae Pathotypes
Cited by: 29
Author(s): Rocío Calderón, Carlos Lucena, J. L. Trapero-Casas, Pablo J. Zarco‐Tejada, Juan A Navas‐Cortés
Software Mentions: 3
Published: almost 12 years ago

10.1371/journal.pone.0221828

Dietary inulin alters the gut microbiome, enhances systemic metabolism and reduces neuroinflammation in an APOE4 mouse model
Cited by: 73
Author(s): Jared D. Hoffman, Lucille M. Yanckello, George E. Chlipala, Tyler C. Hammond, Scott McCulloch, Ishita Parikh, Sydney Sun, Josh M. Morganti, Stefan J. Green, Ai-Ling Lin
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0101618

Honey Pollen: Using Melissopalynology to Understand Foraging Preferences of Bees in Tropical South India
Cited by: 42
Author(s): Raja Ponnuchamy, Vincent Bonhomme, S Prasad, Lipi Das, Prakash Patel, Cédric Gaucherel, A. Pragasam, K. Anupama
Software Mentions: 3
Published: about 12 years ago

10.7554/eLife.50240

Adjusting for age improves identification of gut microbiome alterations in multiple diseases
Cited by: 100
Author(s): Tarini Shankar Ghosh, Mrinmoy Das, Ian B. Jeffery, Paul W. O’Toole
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2020.597653

Cryopreservation and Resuscitation of Natural Aquatic Prokaryotic Communities
Cited by: 4
Author(s): Angel Rain‐Franco, Guilherme Pavan de Moraes, Sara Beier
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0112763

Bacterial Endophytic Communities in the Grapevine Depend on Pest Management
Cited by: 101
Author(s): A. Campisano, Livio Antonielli, Michael Pancher, Sohail Yousaf, Massimo Pindo, I. Pertot
Software Mentions: 3
Published: almost 12 years ago

10.3389/fmicb.2019.01548

Microbiome of the Black-Lipped Pearl Oyster Pinctada margaritifera, a Multi-Tissue Description With Functional Profiling
Cited by: 35
Author(s): Caroline Dubé, Chin‐Long Ky, Serge Planes
Software Mentions: 3
Published: about 7 years ago

10.3389/fmicb.2021.667043

Relative Weight of Organic Waste Origin on Compost and Digestate 16S rRNA Gene Bacterial Profilings and Related Functional Inferences
Cited by: 6
Author(s): Axel Aigle, Emilie Bourgeois, Laurence Marjolet, Sabine Houot, Dominique Patureau, Emmanuel Dœlsch, Benoît Cournoyer, Wessam Galia
Software Mentions: 3
Published: over 5 years ago

10.1002/ece3.1632

Modeling directional spatio-temporal processes in island biogeography
Cited by: 11
Author(s): José C. Carvalho, Pedro Cardoso, François Rigal, Kostas A. Triantis, Paulo A. V. Borges
Software Mentions: 3
Published: almost 11 years ago

10.1155/2018/6280484

Bacterial Community of the Rice Floodwater Using Cultivation-Independent Approaches
Cited by: 13
Author(s): Michele Pittol, Erin D. Scully, Daniel N. Miller, Lisa M. Durso, Lídia Mariana Fiuza, Victor Hugo Valiati
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0223294

Distinctive tasks of different cyanobacteria and associated bacteria in carbon as well as nitrogen fixation and cycling in a late stage Baltic Sea bloom
Cited by: 13
Author(s): Falk Eigemann, Angela Vogts, Maren Voß, Luca Zoccarato, Heide N. Schulz-Vogt
Software Mentions: 3
Published: almost 7 years ago

10.1038/srep45691

Autogenic succession and deterministic recovery following disturbance in soil bacterial communities
Cited by: 63
Author(s): Stephanie D. Jurburg, Inês Nunes, James C. Stegen, Xavier Le Roux, Anders Priemé, Søren J. Sørensen, Joana Falcão Salles
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0076382

A Multifactor Analysis of Fungal and Bacterial Community Structure in the Root Microbiome of Mature Populus deltoides Trees
Cited by: 224
Author(s): Migun Shakya, Neil Gottel, Hector F. Castro, Zamin K. Yang, Lee E. Gunter, Jessy Labbé, Wellington Muchero, Gregory Bonito, Rytas Vilgalys, Gerald A. Tuskan, Mircea Podar, Christopher W. Schadt
Software Mentions: 3
Published: almost 13 years ago

10.1371/journal.pone.0185043

Persistence of marine fish environmental DNA and the influence of sunlight
Cited by: 84
Author(s): Elizabeth A. Andruszkiewicz, Lauren M. Sassoubre, Alexandria B. Boehm
Software Mentions: 3
Published: about 9 years ago

10.3389/fmicb.2018.01192

Distinct Microbial Assemblage Structure and Archaeal Diversity in Sediments of Arctic Thermokarst Lakes Differing in Methane Sources
Cited by: 24
Author(s): Paula B. Matheus Carnevali, Craig W. Herbold, K. P. Hand, John C. Priscu, Alison E. Murray
Software Mentions: 3
Published: over 8 years ago

10.1002/ece3.4853

Without management interventions, endemic wet‐sclerophyll forest is transitioning to rainforest in World Heritage listed K’gari (Fraser Island), Australia
Cited by: 6
Author(s): Vithya Krishnan, Nicole Robinson, Jennifer Firn, G. Applegate, John Herbohn, Susanne Schmidt
Software Mentions: 3
Published: over 7 years ago

10.1186/s13567-019-0633-3

In-feed resin acids reduce matrix metalloproteinase activity in the ileal mucosa of healthy broilers without inducing major effects on the gut microbiota
Cited by: 22
Author(s): Manuel A. Aguirre, Juhani Vuorenmaa, Eija Valkonen, Hannele Kettunen, Chana Callens, Freddy Haesebrouck, Richard Ducatelle, Filip Van Immerseel, Evy Goossens
Software Mentions: 3
Published: over 7 years ago

10.3390/ijerph14010037

Investigation of Indoor Air Quality in Houses of Macedonia
Cited by: 29
Author(s): Silvia Vilčeková, Ilija Zoran Apostoloski, Ľudmila Mečiarová, Eva Krídlová Burdová, Jozef Kiseľák
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0086042

Integrating Stand and Soil Properties to Understand Foliar Nutrient Dynamics during Forest Succession Following Slash-and-Burn Agriculture in the Bolivian Amazon
Cited by: 10
Author(s): Eben N. Broadbent, Angélica M. Almeyda Zambrano, Gregory P. Asner, Marlene Soriano, Christopher B. Field, Harrison Ramos de Souza, Marielos Peña-Claros, Rachel I. Adams, Rodolfo Dirzo, Larry Giles
Software Mentions: 3
Published: over 12 years ago

10.1038/s41396-021-00897-y

Viromes outperform total metagenomes in revealing the spatiotemporal patterns of agricultural soil viral communities
Cited by: 79
Author(s): Christian Santos‐Medellín, Laura Zinke, Anneliek M. ter Horst, Danielle L. Gelardi, Sanjai J. Parikh, Joanne B. Emerson
Software Mentions: 3
Published: over 5 years ago

10.1038/srep41801

Foliar fungi of Betula pendula: impact of tree species mixtures and assessment methods
Cited by: 26
Author(s): Diem Nguyen, Johanna Boberg, Michelle Cleary, Helge Bruelheide, Lydia Hönig, Julia Koricheva, Jan Stenlid
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-019-48521-6

Organic contaminants as an ecological tool to explore niche partitioning: a case study using three pelagic shark species
Cited by: 8
Author(s): Kady Lyons, Dovi Kacev, Antonella Preti, David J. Gillett, Heidi Dewar
Software Mentions: 3
Published: about 7 years ago

10.3389/fmicb.2018.00971

Characterization of Microcystis (Cyanobacteria) Genotypes Based on the Internal Transcribed Spacer Region of rRNA by Next-Generation Sequencing
Cited by: 13
Author(s): Da Huo, Youxin Chen, Tao Zheng, Liu Xiang, Xinyue Zhang, Ge Yu, Zhiyi Qiao, Renhui Li
Software Mentions: 3
Published: over 8 years ago

10.3389/fmicb.2019.02064

Immediate Effects of Ammonia Shock on Transcription and Composition of a Biogas Reactor Microbiome
Cited by: 16
Author(s): Martin Fischer, Andrea Ulbricht, Sven C. Neulinger, Sarah Refai, Kati Waßmann, Sven Künzel, Ruth A. Schmitz
Software Mentions: 3
Published: about 7 years ago

10.1002/ece3.4999

Variable effects on growth and defense traits for plant ecotypic differentiation and phenotypic plasticity along elevation gradients
Cited by: 30
Author(s): Moe Bakhtiari, Ludovico Formenti, Veronica Caggìa, Gaétan Glauser, Sergio Rasmann
Software Mentions: 3
Published: over 7 years ago

10.3389/fmicb.2021.673128

Cross-Sectional Variations in Structure and Function of Coral Reef Microbiome With Local Anthropogenic Impacts on the Kenyan Coast of the Indian Ocean
Cited by: 1
Author(s): Sammy Wambua, Hadrien Gourlé, Etienne P. de Villiers, Oskar Karlsson Lindsjö, Nina Wambiji, Angus H. H. Macdonald, Erik Bongcam‐Rudloff, Santie de Villiers
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-019-48546-x

Understanding PCR Processes to Draw Meaningful Conclusions from Environmental DNA Studies
Cited by: 132
Author(s): Ryan P. Kelly, Andrew O. Shelton, Ramón Gallego
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0095703

Different Relationships between Temporal Phylogenetic Turnover and Phylogenetic Similarity and in Two Forests Were Detected by a New Null Model
Cited by: 4
Author(s): Jiayuan Huang, Jian Zhang, Yong Shen, Juyu Lian, Hong‐Lin Cao, Wanhui Ye, Liang Wu, Yue Bin
Software Mentions: 3
Published: over 12 years ago

10.1371/journal.pone.0212120

Molecular fungal community and its decomposition activity in sapwood and heartwood of 13 temperate European tree species
Cited by: 51
Author(s): Sabrina Leonhardt, Björn Hoppe, Elisa Stengel, Lisa Noll, Julia Moll, Claus Bässler, Andreas Dahl, François Buscot, Martin Hofrichter, Harald Kellner
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-019-55703-9

Significant effect of HIV/HAART on oral microbiota using multivariate analysis
Cited by: 20
Author(s): Ann L. Griffen, Zachary A. Thompson, Clifford J. Beall, Elizabeth A. Lilly, Carolina Granada, Kelly Treas, Kenneth R. DuBois, Shahr B. Hashmi, Chiranjit Mukherjee, Aubrey Gilliland, José Antonio Vázquez, Michael E. Hagensee, Eugene J. Leys, Paul L. Fidel
Software Mentions: 3
Published: over 6 years ago

10.12688/f1000research.22035.2

Staphylococcus aureus nasal carriage and microbiome composition among medical students from Colombia: a cross-sectional study
Cited by: 8
Author(s): Niradiz Reyes, Oscar Montes, Stephanie Figueroa, Raj K. Tiwari, Christopher C. Sollecito, Rebecca Emmerich, Mykhaylo Usyk, Jan Geliebter, Robert D. Burk
Software Mentions: 3
Published: over 6 years ago

10.1002/ece3.7361

Identifying the patterns of changes in α‐ and β‐diversity across <i>Dacrydium pectinatum</i> communities in Hainan Island, China
Cited by: 5
Author(s): Haodong Liu, Hua Liu, Yongfu Chen, Zheng Xu, Yunchuan Dai, Qiao Chen, Yongkang Ma
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0148979

The Metagenome of Utricularia gibba's Traps: Into the Microbial Input to a Carnivorous Plant
Cited by: 19
Author(s): Luis David Alcaraz, Shamayim Martínez-Sánchez, Ignacio Torres, Enrique Ibarra-Laclette, Luis Herrera-Estrella
Software Mentions: 3
Published: over 10 years ago

10.1038/s41598-019-48611-5

Soil acidification in continuously cropped tobacco alters bacterial community structure and diversity via the accumulation of phenolic acids
Cited by: 40
Author(s): Yuxiang Bai, Ge Wang, Ya-Dong Cheng, Puyou Shi, Chengcui Yang, Heng Yang, Zhaoli Xu
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0163148

Evaluation of Lysis Methods for the Extraction of Bacterial DNA for Analysis of the Vaginal Microbiota
Cited by: 64
Author(s): A. Christina Gill, Janneke van de Wijgert, Frances Blow, Alistair C. Darby
Software Mentions: 3
Published: almost 10 years ago

10.1038/s41598-019-56919-5

Environmental impact of tsetse eradication in Senegal
Cited by: 7
Author(s): Mamadou Ciss, Mireille Djimangali Bassène, Momar Talla Seck, Abdou G. Mbaye, Baba Sall, Assane Guèye Fall, Marc J. B. Vreysen, Jérémy Bouyer
Software Mentions: 3
Published: over 6 years ago

10.3390/ijerph15040708

Abundances of Clinically Relevant Antibiotic Resistance Genes and Bacterial Community Diversity in the Weihe River, China
Cited by: 29
Author(s): Xiaojuan Wang, Jie Gu, Hua Gao, Xiaoqing Qian, Haichao Li
Software Mentions: 3
Published: over 8 years ago

10.1038/s42003-021-01841-8

Non-responder phenotype reveals apparent microbiome-wide antibiotic tolerance in the murine gut
Cited by: 1
Author(s): Christian Diener, Anna C. H. Hoge, Sean M. Kearney, Ulrike Kusebauch, Sushmita Patwardhan, Robert L. Moritz, Susan E. Erdman, Sean M. Gibbons
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-019-56977-9

Defining the root endosphere and rhizosphere microbiomes from the World Olive Germplasm Collection
Cited by: 56
Author(s): Antonio José Fernández-González, Pablo J. Villadas, Carmen Gómez-Lama Cabanás, Antonio Valverde-Corredor, Angjelina Belaj, Jesús Mercado‐Blanco, Manuel Fernández‐López
Software Mentions: 3
Published: over 6 years ago

10.1002/mbo3.256

Contrasting spatial patterns and ecological attributes of soil bacterial and archaeal taxa across a landscape
Cited by: 38
Author(s): Florentin Constancias, Nicolas P.A. Saby, Sébastien Terrat, Samuel Dequiedt, Wallid Horrigue, Virginie Nowak, Jean‐Philippe Guillemin, Luc Biju‐Duval, Nicolas Chemidlin Prévost-Bouré, Lionel Ranjard
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0073688

Slipping through the Cracks: Rubber Plantation Is Unsuitable Breeding Habitat for Frogs in Xishuangbanna, China
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Author(s): Jocelyn E. Behm, Xiaodong Yang, Chen Jin
Software Mentions: 3
Published: about 13 years ago

10.1371/journal.pone.0248147

Influence of industry standard feeding frequencies on behavioral patterns and rumen and fecal bacterial communities in Holstein and Jersey cows
Cited by: 5
Author(s): Vanessa M. De La Guardia-Hidrogo, Henry A. Paz
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0043866

Functional Biogeography of Ocean Microbes Revealed through Non-Negative Matrix Factorization
Cited by: 41
Author(s): Xingpeng Jiang, Morgan G. I. Langille, Russell Y. Neches, Marie A. Elliot, Simon A. Levin, Jonathan A. Eisen, Joshua S. Weitz, Jonathan Dushoff
Software Mentions: 3
Published: about 14 years ago

10.1002/ece3.7218

Burrowing by translocated boodie ( Bettongia lesueur ) populations alters soils but has limited effects on vegetation
Cited by: 5
Author(s): Bryony Palmer, Leonie E. Valentine, Cheryl A. Lohr, Gergana N. Daskalova, Richard J. Hobbs
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0032093

Spatial Scales of Bacterial Diversity in Cold-Water Coral Reef Ecosystems
Cited by: 39
Author(s): Sandra Schöttner, Christian Wild, Friederike Hoffmann, Antje Boetius, Alban Ramette
Software Mentions: 3
Published: over 14 years ago

10.1371/journal.pone.0215872

Incubation and grazing effects on spirotrich ciliate diversity inferred from molecular analyses of microcosm experiments
Cited by: 6
Author(s): Jean‐David Grattepanche, Doris L. Juarez, Cameah Corin Wood, George B. McManus, Laura A. Katz
Software Mentions: 3
Published: over 7 years ago

10.3389/fmicb.2018.02485

Flexible Symbiotic Associations of Symbiodinium With Five Typical Coral Species in Tropical and Subtropical Reef Regions of the Northern South China Sea
Cited by: 28
Author(s): Sanqiang Gong, Guangjun Chai, Yilin Xiao, Lijia Xu, Kefu Yu, Jinlong Li, Fang Liu, Hao Cheng, Fengli Zhang, Baolin Liao, Zhiyong Li
Software Mentions: 3
Published: almost 8 years ago

10.1002/ece3.305

Fungal soil communities in a young transgenic poplar plantation form a rich reservoir for fungal root communities
Cited by: 78
Author(s): Lara Danielsen, Andrea Thürmer, Peter Meinicke, Marc Buée, Emmanuelle Morin, Francis Martin, Gilles Pilate, Rolf Daniel, Andrea Polle, M. Reich
Software Mentions: 3
Published: about 14 years ago

10.1002/ece3.7640

Common spatial patterns of trees in various tropical forests: Small trees are associated with increased diversity at small spatial scales
Cited by: 3
Author(s): Pavel Fibich, Vojtěch Novotný, Sisira Ediriweera, Savitri Gunatilleke, Nimal Gunatilleke, Kenneth Molem, George D. Weiblen, Jan Lepš
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0011285

Characterization of Coastal Urban Watershed Bacterial Communities Leads to Alternative Community-Based Indicators
Cited by: 64
Author(s): Cindy H. Wu, Bram Sercu, Laurie C. Van De Werfhorst, Jakk Wong, Todd Z. DeSantis, Eoin L. Brodie, Terry C. Hazen, Patricia A. Holden, Gary L. Andersen
Software Mentions: 3
Published: about 16 years ago

10.1371/journal.pone.0250427

Mesophotic fish communities of the ancient coastline in Western Australia
Cited by: 5
Author(s): Leanne M. Currey‐Randall, Ronen Galaiduk, Marcus Stowar, Brigit I. Vaughan, Karen J. Miller
Software Mentions: 3
Published: over 5 years ago

10.1007/s00572-017-0788-6

Root-associated fungal communities in three Pyroleae species and their mycobiont sharing with surrounding trees in subalpine coniferous forests on Mount Fuji, Japan
Cited by: 4
Author(s): Shuzheng Jia, Takashi Nakano, Masahira Hattori, Kazuhide Nara
Software Mentions: 3
Published: about 9 years ago

10.1002/ece3.5638

Effect of coupled reduced irrigation and nitrogen fertilizer on soil mite community composition in a wheat field
Cited by: 9
Author(s): Kewei Chen, Fang Ouyang, Xianghui Liu, Ji Ma, Fenghua Zhao, Zhu Ouyang, Feng Ge
Software Mentions: 3
Published: about 7 years ago

10.3389/fmicb.2018.01926

Endophytic Bacterial Community Structure and Function of Herbaceous Plants From Petroleum Hydrocarbon Contaminated and Non-contaminated Sites
Cited by: 20
Author(s): Rhea Lumactud, Roberta R. Fulthorpe
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pone.0228944

The influence of collection method on paleoecological datasets: In-place versus surface-collected fossil samples in the Pennsylvanian Finis Shale, Texas, USA
Cited by: 5
Author(s): Frank L. Forcino, Emily S. Stafford
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-021-87017-0

The larval environment strongly influences the bacterial communities of Aedes triseriatus and Aedes japonicus (Diptera: Culicidae)
Cited by: 6
Author(s): Elijah O. Juma, Brian F. Allan, Chang‐Hyun Kim, Chris Stone, Christopher A. Dunlap, Ephantus J. Muturi
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0122432

Poor Prospects for Avian Biodiversity in Amazonian Oil Palm
Cited by: 54
Author(s): Alexander Charles Lees, Nárgila Moura, Arlete Silva de Almeida, Ima Célia Guimarães Vieira
Software Mentions: 3
Published: over 11 years ago

10.1002/ece3.8035

Allochthonous resources are less important for faunal communities on highly productive, small tropical islands
Cited by: 1
Author(s): Sebastian Steibl, Robert Sigl, Sanja Bláha, Sophia Drescher, Gerhard Gebauer, Elif Gürkal, Frederic Hüftlein, Anna Satzger, Michael Schwarzer, Dimitri Seidenath, Jana Welfenbach, Raphael S. Zinser, Christian Laforsch
Software Mentions: 3
Published: about 5 years ago

10.3389/fmicb.2015.00970

French invasive Asian tiger mosquito populations harbor reduced bacterial microbiota and genetic diversity compared to Vietnamese autochthonous relatives
Cited by: 73
Author(s): Guillaume Minard, Florence‐Hélène Tran, Van Trân Van, Clément Goubert, Christophe Bellet, Grégory L’Ambert, Khanh Ly Huynh Kim, Trang Huynh Thi Thuy, Patrick Mavingui, Claire Valiente Moro
Software Mentions: 3
Published: almost 11 years ago

10.1371/journal.pone.0133501

Hotspots of Community Change: Temporal Dynamics Are Spatially Variable in Understory Plant Composition of a California Oak Woodland
Cited by: 3
Author(s): Erica Spotswood, James W. Bartolome, Barbara Allen-Díaz
Software Mentions: 3
Published: about 11 years ago

10.1186/s40462-021-00261-x

Foraging conditions for breeding penguins improve with distance from colony and progression of the breeding season at the South Orkney Islands
Cited by: 7
Author(s): Jessica Ann Phillips, Annette L. Fayet, Tim Guilford, Fabrizio Manco, Victoria Warwick-Evans, Philip N. Trathan
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-87623-y

Land use in urban areas impacts the composition of soil bacterial communities involved in nitrogen cycling. A case study from Lefkosia (Nicosia) Cyprus
Cited by: 11
Author(s): Coralea Stephanou, Michalis Omirou, Laurent Philippot, Andreas M. Zissimos, Irene C. Christoforou, Slave Trajanoski, Anastasis Oulas, Ioannis M. Ioannides
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2021.618693

Chicken Manure and Mushroom Residues Affect Soil Bacterial Community Structure but Not the Bacterial Resistome When Applied at the Same Rate of Nitrogen for 3 Years
Cited by: 8
Author(s): Shuang Peng, Yiming Wang, Ruirui Chen, Xiangui Lin
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-019-44665-7

First report of community dynamics of arbuscular mycorrhizal fungi in radiocesium degradation lands after the Fukushima-Daiichi Nuclear disaster in Japan
Cited by: 11
Author(s): Masao Higo, Dong-Jin Kang, Katsunori Isobe
Software Mentions: 3
Published: over 7 years ago

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