cran: vegan | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2020.571537

Ozone Decreased Enteric Methane Production by 20% in an in vitro Rumen Fermentation System
Cited by: 4
Author(s): Lucy Zhao, Eleonora Caro, Devin B. Holman, Katherine E. Gzyl, Peter J. Moate, Alex V. Chaves
Software Mentions: 3
Published: almost 6 years ago

10.3389/fmicb.2020.00551

Crosstalk Between Female Gonadal Hormones and Vaginal Microbiota Across Various Phases of Women’s Gynecological Lifecycle
Cited by: 51
Author(s): Harrisham Kaur, Mitali Merchant, Mohammed Monzoorul Haque, Sharmila S. Mande
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2012.00157

Detection of Expression Quantitative Trait Loci in Complex Mouse Crosses: Impact and Alleviation of Data Quality and Complex Population Substructure
Cited by: 6
Author(s): Ovidiu D. Iancu, Priscila Darakjian, Sunita Kawane, Daniel Bottomly, Robert Hitzemann, Shannon K. McWeeney
Software Mentions: 3
Published: over 14 years ago

10.1186/s40168-021-01079-w

Low shifts in salinity determined assembly processes and network stability of microeukaryotic plankton communities in a subtropical urban reservoir
Cited by: 158
Author(s): Yuanyuan Mo, Peng Feng, Xiaofei Gao, Peng Xiao, Ramiro Logares, Erik Jeppesen, Kexin Ren, Yuanyuan Xue, Jun Yang
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-93178-9

Water quality drives the regional patterns of an algal metacommunity in interconnected lakes
Cited by: 1
Author(s): Min Sung Kim, Seok Hyun Ahn, In Jae Jeong, Tae Kwon Lee
Software Mentions: 3
Published: about 5 years ago

10.3389/fgene.2019.01089

Molecular Phylogeography Analysis Reveals Population Dynamics and Genetic Divergence of a Widespread Tree Pterocarya stenoptera in China
Cited by: 7
Author(s): Zhi-Hao Qian, Yong Li, Mingwan Li, Yong He, Jiaxin Li, Xiaofan Ye
Software Mentions: 3
Published: almost 7 years ago

10.1128/mSystems.00578-19

The Gut Microbial Diversity of Newly Diagnosed Diabetics but Not of Prediabetics Is Significantly Different from That of Healthy Nondiabetics
Cited by: 57
Author(s): Akshay H. Gaike, Dhiraj Paul, Shrikant Bhute, Dhiraj Dhotre, Pranav Pande, Smitha Upadhyaya, Yugandhar B. S. Reddy, Ramya Sampath, Debjani Ghosh, D. Chandraprabha, Jhankar Acharya, Gautam Banerjee, Vilas P. Sinkar, Surendra Ghaskadbi, Yogesh S. Shouche
Software Mentions: 3
Published: over 6 years ago

10.1186/s40168-021-01137-3

Gut microbiota regulation of P-glycoprotein in the intestinal epithelium in maintenance of homeostasis
Cited by: 44
Author(s): Sage E. Foley, Christine Tuohy, Merran Dunford, Michael J. Grey, Heidi De Luca, Caitlin Cawley, Rose L. Szabady, Ana Maldonado‐Contreras, Jean Marie Houghton, Doyle V. Ward, Randall J. Mrsny, Beth A. McCormick
Software Mentions: 3
Published: about 5 years ago

10.3389/fmicb.2017.02088

Alternative Growth Promoters Modulate Broiler Gut Microbiome and Enhance Body Weight Gain
Cited by: 72
Author(s): Debabrata Biswas, Seon-Woo Kim, Bradd J. Haley, Jo Ann S. Van Kessel, Debabrata Biswas
Software Mentions: 3
Published: almost 9 years ago

10.3389/fgene.2020.00071

Identification of Multigene Biomarker for Shrimp White Feces Syndrome by Full-Length Transcriptome Sequencing
Cited by: 17
Author(s): Shenzheng Zeng, Rui Zhou, Shicheng Bao, Xuanting Li, Zhao‐Peng Deng, Dongwei Hou, Shaoping Weng, Jianguo He, Zhijian Huang
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2020.580630

Ecological Factors Generally Not Altitude Related Played Main Roles in Driving Potential Adaptive Evolution at Elevational Range Margin Populations of Taiwan Incense Cedar (Calocedrus formosana)
Cited by: 4
Author(s): Wei Ming Chien, Chih-Hsiung Chang, Yu Chung Chiang, Shih Ying Hwang
Software Mentions: 3
Published: almost 6 years ago

10.7717/peerj.7304

Proximate grassland and shrub-encroached sites show dramatic restructuring of soil bacterial communities
Cited by: 7
Author(s): Xingjia Xiang, Sean M. Gibbons, Ling He, Haihua Shen, Haiyan Chu
Software Mentions: 3
Published: about 7 years ago

10.3389/fmicb.2020.605622

Pathogen Infection and Host-Resistance Interactively Affect Root-Associated Fungal Communities in Watermelon
Cited by: 8
Author(s): Lihui Xu, Mogens Nicolaisen, John Larsen, Rong Zeng, Shigang Gao, Fangyin Dai
Software Mentions: 3
Published: almost 6 years ago

10.3389/fmicb.2020.571159

Niche Specialization and Functional Overlap of Bamboo Leaf and Root Microbiota
Cited by: 8
Author(s): Ying Zheng, Xinchun Lin
Software Mentions: 3
Published: about 6 years ago

10.3389/fmicb.2014.00668

Contrasting assembly processes in a bacterial metacommunity along a desiccation gradient
Cited by: 28
Author(s): Ángel Valverde, Thulani P. Makhalanyane, Don A. Cowan
Software Mentions: 3
Published: almost 12 years ago

10.1016/j.mambio.2018.04.002

Exploring Rattus praetor (Rodentia, Muridae) as a possible species complex using geometric morphometrics on dental morphology
Cited by: 6
Author(s): Ardern Hulme-Beaman, Thomas Cucchi, Allowen Evin, Jeremy B. Searle, Keith Dobney
Software Mentions: 3
Published: about 8 years ago

10.3389/fimmu.2020.01139

Intraepithelial T Cells Diverge by Intestinal Location as Pigs Age
Cited by: 17
Author(s): Jayne E Wiarda, Julian Trachsel, Zahra F Bond, Kristen A Byrne, Nicholas K. Gabler, Crystal L. Loving
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0141752

Landscape Diversity and Crop Vigor Influence Biological Control of the Western Grape Leafhopper (E. elegantula Osborn) in Vineyards
Cited by: 13
Author(s): H. F. Wilson, Albie Miles, Kent M. Daane, Miguel A. Altieri
Software Mentions: 3
Published: almost 11 years ago

10.3389/fmicb.2021.620220

Different Active Microbial Communities in Two Contrasted Subantarctic Fjords
Cited by: 1
Author(s): Claudia Maturana-Martínez, Camila Fernández, Humberto E. González, Pierre E. Galand
Software Mentions: 3
Published: about 5 years ago

10.1038/s42003-021-01841-8

Non-responder phenotype reveals apparent microbiome-wide antibiotic tolerance in the murine gut
Cited by: 1
Author(s): Christian Diener, Anna C. H. Hoge, Sean M. Kearney, Ulrike Kusebauch, Sushmita Patwardhan, Robert L. Moritz, Susan E. Erdman, Sean M. Gibbons
Software Mentions: 3
Published: over 5 years ago

10.1186/s40168-020-00846-5

Distinct actions of the fermented beverage kefir on host behaviour, immunity and microbiome gut-brain modules in the mouse
Cited by: 43
Author(s): Marcel van de Wouw, Aaron M. Walsh, Fiona Crispie, Lucas van Leuven, Joshua M. Lyte, Marcus Boehme, Gerard Clarke, Timothy G. Dinan, Paul D. Cotter
Software Mentions: 3
Published: over 6 years ago

10.7717/peerj.81

Benthic communities at two remote Pacific coral reefs: effects of reef habitat, depth, and wave energy gradients on spatial patterns
Cited by: 100
Author(s): Gareth J. Williams, Jennifer E. Smith, Eric Conklin, Jamison M. Gove, Enric Sala, Stuart A. Sandin
Software Mentions: 3
Published: over 13 years ago

10.1371/journal.pone.0117210

Comparative Analysis of the Intestinal Bacterial and RNA Viral Communities from Sentinel Birds Placed on Selected Broiler Chicken Farms
Cited by: 31
Author(s): J. Michael Day, Brian B. Oakley, Bruce S. Seal, László Zsák
Software Mentions: 3
Published: over 11 years ago

10.3389/fimmu.2020.00838

IL-22 Paucity in APECED Is Associated With Mucosal and Microbial Alterations in Oral Cavity
Cited by: 13
Author(s): Epp Kaleviste, Malte Rühlemann, Jaanika Kärner, Liis Haljasmägi, Liina Tserel, Elin Org, Katarina Trebušak Podkrajšek, Tadej Battelino, Corinna Bang, André Franke, Pärt Peterson, Kai Kisand
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0182054

Compositional changes in bee and wasp communities along Neotropical mountain altitudinal gradient
Cited by: 48
Author(s): Lucas Neves Perillo, Frederico de Siqueira Neves, Yasmine Antonini, Rogério Parentoni Martins
Software Mentions: 3
Published: about 9 years ago

10.3389/fimmu.2017.01914

Feeding Immunity: Physiological and Behavioral Responses to Infection and Resource Limitation
Cited by: 27
Author(s): Sarah A. Budischak, Christina Hansen, Quentin Caudron, Romain Garnier, Tyler R. Kartzinel, István Pelczer, Clayton E. Cressler, Anieke van Leeuwen, Andrea L. Graham
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0231553

Elevation and latitude drives structure and tree species composition in Andean forests: Results from a large-scale plot network
Cited by: 47
Author(s): Agustina Malizia, Cecilia Blundo, Julieta Carilla, Oriana Osinaga Acosta, Francisco Cuesta, Álvaro Duque, Nikolay Aguirre, Zhofre Aguirre Mendoza, Michele Ataroff, Selene Báez, Marco Calderón-Loor, Leslie Cayola, Luis Cayuela, Sergio Javier Ceballos, Hugo Cedillo, W. Farfan Rios, Kenneth J. Feeley, Alfredo Fuentes, Luis E. Gámez, Ricardo Grau, Juergen Homeier, Oswaldo Jadán, Luis Daniel Llambí, María Isabel Loza Rivera, Manuel J. Macía, Yadvinder Malhi, Lucio R. Malizia, Manuel Peralvo, Esteban Pinto, Sebastián J. Tello, Miles R. Silman, Kenneth R. Young
Software Mentions: 3
Published: over 6 years ago

10.1038/s42003-020-01632-7

Adaptive evolution in a conifer hybrid zone is driven by a mosaic of recently introgressed and background genetic variants
Cited by: 13
Author(s): Mitra Menon, Justin C. Bagley, Gerald Page, Amy V. Whipple, Anna W. Schoettle, Christopher J. Still, Christian Wehenkel, Kristen M. Waring, Lluvia Flores‐Rentería, Samuel A. Cushman, Andrew J. Eckert
Software Mentions: 3
Published: over 5 years ago

10.1186/s12862-017-1034-8

Diversification and spatial structuring in the mutualism between Ficus septica and its pollinating wasps in insular South East Asia
Cited by: 32
Author(s): Lillian Jennifer Rodriguez, Anthony Bain, Lien‐Siang Chou, Lucie Conchou, Astrid Cruaud, Regielene S. Gonzales, Martine Hossaert‐McKey, Jean‐Yves Rasplus, Hsy‐Yu Tzeng, Finn Kjellberg
Software Mentions: 3
Published: about 9 years ago

10.3389/fimmu.2021.707355

Dysregulation of the Immune Environment in the Airways During HIV Infection
Cited by: 6
Author(s): Rubina Bunjun, Andreia Soares, Narjis Thawer, Tracey L. Müller, Agano Kiravu, Zekarias Ginbot, Björn Corleis, Brandon D. Murugan, Douglas S. Kwon, Florian von Groote-Bidlingmaier, Catherine Riou, Robert J. Wilkinson, Gerhard Walzl, Wendy A. Burgers
Software Mentions: 3
Published: about 5 years ago

10.1038/s42003-020-01468-1

Cyanobacterial blooms contribute to the diversity of antibiotic-resistance genes in aquatic ecosystems
Cited by: 48
Author(s): Qi Zhang, Zhenyan Zhang, Tao Lu, Willie J.G.M. Peijnenburg, Michael R. Gillings, Xiao‐Ru Yang, Jianmeng Chen, Josep Peñuelas, Yanmin Zhu, Ning Zhou, Jian‐Qiang Su, Haifeng Qian
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-021-93571-4

Early modifications of the gut microbiome in children with hepatic sinusoidal obstruction syndrome after hematopoietic stem cell transplantation
Cited by: 15
Author(s): Riccardo Masetti, Elena Biagi, Daniele Zama, Edoardo Muratore, Federica D’Amico, Davide Leardini, Silvia Turroni, Arcangelo Prete, Patrizia Brigidi, Andrea Pession
Software Mentions: 3
Published: about 5 years ago

10.3389/fmicb.2020.557980

Environmental Nutrients Alter Bacterial and Fungal Gut Microbiomes in the Common Meadow Katydid, Orchelimum vulgare
Cited by: 7
Author(s): Melani K. Muratore, Yvonne Sun, Chelse M. Prather
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0226432

An inter-island comparison of Darwin’s finches reveals the impact of habitat, host phylogeny, and island on the gut microbiome
Cited by: 13
Author(s): Wesley T. Loo, Rachael Y. Dudaniec, Sonia Kleindorfer, Colleen M. Cavanaugh
Software Mentions: 3
Published: almost 7 years ago

10.3389/fmicb.2020.586148

Changes in Activity and Community Composition Shape Bacterial Responses to Size-Fractionated Marine DOM
Cited by: 8
Author(s): Marta M. Varela, Tamara Rodríguez‐Ramos, Elisa Guerrero-Feijóo, Mar Nieto‐Cid
Software Mentions: 3
Published: almost 6 years ago

10.3389/fimmu.2020.01245

Low IgA Associated With Oropharyngeal Microbiota Changes and Lung Disease in Primary Antibody Deficiency
Cited by: 21
Author(s): Roos-Marijn Berbers, Firdaus A. A. Mohamed Hoesein, Pauline M. Ellerbroek, Joris M. van Montfrans, Virgil A. S. H. Dalm, P. Martin van Hagen, Fernanda L. Paganelli, Marco C. Viveen, Malbert R. C. Rogers, Pim A. de Jong, Hae‐Won Uh, Rob J. L. Willems, Helen L. Leavis
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0153661

Linking Native and Invader Traits Explains Native Spider Population Responses to Plant Invasion
Cited by: 5
Author(s): James W. Smith, Douglas J. Emlen, Dean E. Pearson
Software Mentions: 3
Published: over 10 years ago

10.3390/md17100578

Cultivation of Sponge-Associated Bacteria from Agelas sventres and Xestospongia muta Collected from Different Depths
Cited by: 10
Author(s): Anak Agung Gede Indraningrat, Sebastian Micheller, Mandy Runderkamp, Ina Sauerland, Leontine E. Becking, Hauke Smidt, Detmer Sipkema
Software Mentions: 3
Published: almost 7 years ago

10.1186/1756-3305-7-437

Dynamics of prevalence and diversity of avian malaria infections in wild Culex pipiens mosquitoes: the effects of Wolbachia, filarial nematodes and insecticide resistance
Cited by: 36
Author(s): Flore Zélé, Juilen Vézilier, Grégory L’Ambert, Antoine Nicot, Sylvain Gandon, Ana Rivero, Olivier Duron
Software Mentions: 3
Published: over 12 years ago

10.1186/s40168-020-0789-0

Community recovery dynamics in yellow perch microbiome after gradual and constant metallic perturbations
Cited by: 20
Author(s): Bachar Cheaib, Hamza Seghouani, Umer Zeeshan Ijaz, Nicolas Derôme
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2019.01666

Compositional Shifts of Bacterial Communities Associated With Pyropia yezoensis and Surrounding Seawater Co-occurring With Red Rot Disease
Cited by: 14
Author(s): Yonggang Yan, Huichao Yang, Lei Tang, Jie Li, Yunxiang Mao, Zhaolan Mo
Software Mentions: 3
Published: about 7 years ago

10.1186/s13071-020-04379-6

Multiscale environmental determinants of Leishmania vectors in the urban-rural context
Cited by: 9
Author(s): María Gabriela Quintana, María Soledad Santini, Regino Cavia, María Mercedes Martínez, Domingo Javier Liotta, María Soledad Fernández, Adriana Pérez, José Manuel Direni Mancini, Sofía Lorián Moya, Magalí Gabriela Giuliani, Oscar Daniel Salomón
Software Mentions: 3
Published: almost 6 years ago

10.3389/fmicb.2020.542220

Soil Bacterial and Fungal Richness Forecast Patterns of Early Pine Litter Decomposition
Cited by: 15
Author(s): Michaeline B. N. Albright, Renee Johansen, Jaron Thompson, Deanna Lopez, La Verne Gallegos‐Graves, Marie E. Kroeger, Andreas Runde, Rebecca C. Mueller, Alex D. Washburne, Brian Munsky, Thomas M. Yoshida, John Dunbar
Software Mentions: 3
Published: almost 6 years ago

10.1038/s42003-021-01988-4

The hierarchy of root branching order determines bacterial composition, microbial carrying capacity and microbial filtering
Cited by: 24
Author(s): William L. King, Caylon F. Yates, Jing Guo, Suzanne M. Fleishman, Ryan V. Trexler, Michela Centinari, Terrence H. Bell, David M. Eissenstat
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2015.00337

Forest floor community metatranscriptomes identify fungal and bacterial responses to N deposition in two maple forests
Cited by: 68
Author(s): Cedar Hesse, Rebecca C. Mueller, Momchilo Vuyisich, La Verne Gallegos‐Graves, Cheryl D. Gleasner, Donald R. Zak, Cheryl R. Kuske
Software Mentions: 3
Published: over 11 years ago

10.1186/s13071-021-04999-6

Australian mosquito assemblages vary between ground and sub-canopy habitats
Cited by: 1
Author(s): Boni F. Sebayang, Tanya L. Russell, Kyran M. Staunton, Michael Townsend, Christopher J. Paton, Tovi Lehmann, Thomas R. Burkot
Software Mentions: 3
Published: almost 5 years ago

10.3389/fmicb.2018.01410

Humic Substances Alter Ammonia Production and the Microbial Populations Within a RUSITEC Fed a Mixed Hay – Concentrate Diet
Cited by: 18
Author(s): Stephanie A. Terry, Aline Maria Pereira Cruz Ramos, Devin B. Holman, Tim A. McAllister, Gerhard Breves, A. V. Chaves
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pone.0222080

Transcriptome divergence during leaf development in two contrasting switchgrass (Panicum virgatum L.) cultivars
Cited by: 8
Author(s): Nathan A. Palmer, R. V. Chowda-Reddy, Anthony A. Muhle, T. Satyanarayana, Gary Y. Yuen, Serge J. Edmé, Robert B. Mitchell, Gautam Sarath
Software Mentions: 3
Published: about 7 years ago

10.3389/fmicb.2020.596681

Functional Changes of the Community of Microbes With Ni-Dependent Enzyme Genes Accompany Adaptation of the Ruminal Microbiome to Urea-Supplemented Diets
Cited by: 4
Author(s): Zhongyan Lu, Zhihui Xu, Lingmeng Kong, Hong Shen, Jörg R. Aschenbach
Software Mentions: 3
Published: over 5 years ago

10.1186/s40168-021-01049-2

Specific and conserved patterns of microbiota-structuring by maize benzoxazinoids in the field
Cited by: 41
Author(s): Selma Cadot, Hang Guan, Moritz Bigalke, Jean‐Claude Walser, Georg Jander, Matthias Erb, Marcel G. A. van der Heijden, Klaus Schlaeppi
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2020.597911

The Composition and Concordance of Lactobacillus Populations of Infant Gut and the Corresponding Breast-Milk and Maternal Gut
Cited by: 22
Author(s): Xu-Yao Zhang, Saiyidan Mushajiang, Baolong Luo, Fengwei Tian, Yuwen Ni, Wenli Yan
Software Mentions: 3
Published: over 5 years ago

10.1016/j.marenvres.2020.104968

Meiofauna improve oxygenation and accelerate sulfide removal in the seasonally hypoxic seabed
Cited by: 15
Author(s): Stefano Bonaglia, Johanna Hedberg, Ugo Marzocchi, Sven Iburg, Ronnie N. Glud, Francisco J. A. Nascimento
Software Mentions: 3
Published: about 6 years ago

10.3389/fmicb.2019.02612

Evaluation of Human Milk Microbiota by 16S rRNA Gene Next-Generation Sequencing (NGS) and Cultivation/MALDI-TOF Mass Spectrometry Identification
Cited by: 22
Author(s): Primož Treven, Aleksander Mahnič, Maja Rupnik, Majda Golob, Tina Pirš, Bojana Bogovič Matijašić, Petra Mohar Lorbeg
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-020-61559-1

Bacterial analysis in the early developmental stages of the black tiger shrimp (Penaeus monodon)
Cited by: 32
Author(s): Pacharaporn Angthong, Tanaporn Uengwetwanit, Sopacha Arayamethakorn, Panomkorn Chaitongsakul, Nitsara Karoonuthaisiri, Wanilada Rungrassamee
Software Mentions: 3
Published: over 6 years ago

10.1186/s13568-021-01246-0

Identification of the molecular mechanisms underlying brisket disease in Holstein heifers via microbiota and metabolome analyses
Cited by: 1
Author(s): Kun Yao, Shuxiang Wang, Gaowa Naren, Shuai Huang, Shengli Li, Weijuan Shao
Software Mentions: 3
Published: over 5 years ago

10.1186/s12862-018-1200-7

Influence of genome and bio-ecology on the prevalence of genome exchange in unisexuals of the Ambystoma complex
Cited by: 5
Author(s): Bernard Angers
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0090731

Seasonal Variation in Human Gut Microbiome Composition
Cited by: 225
Author(s): Emily Davenport, Orna Mizrahi-Man, Katelyn Michelini, Luis B. Barreiro, Carole Ober, Yoav Gilad
Software Mentions: 3
Published: over 12 years ago

10.3389/fmicb.2019.00461

Spatial Variability of Antarctic Surface Snow Bacterial Communities
Cited by: 19
Author(s): Lucie Malard, Marie Šabacká, Iordanis Magiopoulos, Matthew C. Mowlem, Andy Hodson, Martyn Tranter, Martín J. Siegert, David A. Pearce
Software Mentions: 3
Published: over 7 years ago

10.7717/peerj.9538

A comparison of lodgepole and spruce needle chemistry impacts on terrestrial biogeochemical processes during isolated decomposition
Cited by: 5
Author(s): Laura Leonard, Kristin M. Mikkelson, Zhao Hao, Eoin L. Brodie, Kenneth H. Williams, Jonathan O. Sharp
Software Mentions: 3
Published: about 6 years ago

10.3390/antibiotics10020191

Gentamicin Adsorption onto Soil Particles Prevents Overall Short-Term Effects on the Soil Microbiome and Resistome
Cited by: 3
Author(s): Concepcion Sanchez-Cid, Alexandre Guironnet, Laure Wiest, Emmanuelle Vulliet, Timothy M. Vogel
Software Mentions: 3
Published: over 5 years ago

10.1128/mSystems.00412-20

Shifts in the Bacterial Population and Ecosystem Functions in Response to Vegetation in the Yellow River Delta Wetlands
Cited by: 17
Author(s): Jia‐Ning Wang, Jingjing Wang, Zhaoke Zheng, Zhifeng Li, Zhiguo Zhang, Decun Zhao, Lidong Wang, Lu Feng, Yuezhong Li
Software Mentions: 3
Published: about 6 years ago

10.1128/mSystems.00876-19

Initial Mapping of the New York City Wastewater Virome
Cited by: 24
Author(s): Kristen M. Gulino, Jahan Rahman, Michelle Badri, James T. Morton, Richard Bonneau, Elodie Ghedin
Software Mentions: 3
Published: about 6 years ago

10.3389/fmicb.2020.570770

Metagenomics Reveals Diet-Specific Specialization of Bacterial Communities in Fungus Gardens of Grass- and Dicot-Cutter Ants
Cited by: 8
Author(s): Lily Khadempour, Huan Fan, Ken Keefover‐Ring, Camila Carlos‐Shanley, Nilson S. Nagamoto, Miranda A. Dam, Mônica Tallarico Pupo, Cameron R. Currie
Software Mentions: 3
Published: almost 6 years ago

10.3390/antibiotics10080926

Protective Effect of Baicalin against Clostridioides difficile Infection in Mice
Cited by: 4
Author(s): Abraham Joseph Pellissery, Poonam Gopika Vinayamohan, Deepa Kuttappan, Neha Mishra, B. O. Fragomeni, Kendra Maas, Shankumar Mooyottu, Kumar Venkitanarayanan
Software Mentions: 3
Published: about 5 years ago

10.1128/mSystems.00864-19

Interindividual Variation in Dietary Carbohydrate Metabolism by Gut Bacteria Revealed with Droplet Microfluidic Culture
Cited by: 31
Author(s): Max M. Villa, Rachael J. Bloom, Justin D. Silverman, Heather K. Durand, Sharon Jiang, Anchi Wu, Eric P. Dallow, Shuqiang Huang, You Li, Lawrence A. David
Software Mentions: 3
Published: about 6 years ago

10.3389/fmicb.2019.02635

Intestinal Bacteroides sp. Imbalance Associated With the Occurrence of Childhood Undernutrition in China
Cited by: 8
Author(s): Dongfang Li, Yinhu Li, Wenkui Dai, Huihui Wang, Chuangzhao Qiu, Feng Su, Qian Zhou, Wenjian Wang, Xin Feng, Kaihu Yao, Yanhong Liu, Yonghong Yang, Zhenyu Yang, Ximing Xu, Shuai Cheng Li, Ju-Rong Wei, Ke Zhou
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-020-61392-6

Cholesterol-dependent enrichment of understudied erythrocytic stages of human Plasmodium parasites
Cited by: 16
Author(s): Audrey C. Brown, Christopher C. Moore, Jennifer L. Guler
Software Mentions: 3
Published: over 6 years ago

10.1186/s13071-019-3517-5

Surface sterilization methods impact measures of internal microbial diversity in ticks
Cited by: 65
Author(s): Florian Binetruy, Marlène Dupraz, Marie Buysse, Olivier Duron
Software Mentions: 3
Published: over 7 years ago

10.3389/fmicb.2017.01313

Spatial and Temporal Microbial Patterns in a Tropical Macrotidal Estuary Subject to Urbanization
Cited by: 30
Author(s): Mirjam Kaestli, Anna J. Skillington, Karen Kennedy, M. Majid, David Williams, Keith A. McGuinness, Niels C. Munksgaard, Karen S. Gibb
Software Mentions: 3
Published: about 9 years ago

10.3389/fmicb.2016.00476

Diversity and Temporal Dynamics of the Epiphytic Bacterial Communities Associated with the Canopy-Forming Seaweed Cystoseira compressa (Esper) Gerloff and Nizamuddin
Cited by: 76
Author(s): Francesco Paolo Mancuso, Sofie D’hondt, Anne Willems, Laura Airoldi, Olivier De Clerck
Software Mentions: 3
Published: over 10 years ago

10.3389/fmicb.2015.00522

Microbial responses to changes in flow status in temporary headwater streams: a cross-system comparison
Cited by: 39
Author(s): Catherine M. Febria, Jacob D. Hosen, Byron C. Crump, Margaret A. Palmer, D. Dudley Williams
Software Mentions: 3
Published: over 11 years ago

10.1186/s40168-018-0429-0

A novel affordable reagent for room temperature storage and transport of fecal samples for metagenomic analyses
Cited by: 47
Author(s): Mo Han, Lilan Hao, Yuxiang Lin, Fang Li, Jian Wang, Huanming Yang, Liang Xiao, Karsten Kristiansen, Huijue Jia, Junhua Li
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-020-61193-x

Tropical pitcher plants (Nepenthes) act as ecological filters by altering properties of their fluid microenvironments
Cited by: 13
Author(s): Kadeem J. Gilbert, Leonora S. Bittleston, Wenfei Tong, Naomi E. Pierce
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2020.00275

Local Variability in Microbiome Composition and Growth Suggests Habitat Preferences for Two Reef-Building Cold-Water Coral Species
Cited by: 12
Author(s): Leïla Chapron, Franck Lartaud, Nadine Le Bris, Erwan Péru, Pierre E. Galand
Software Mentions: 3
Published: over 6 years ago

10.1128/mSystems.00337-20

Long-Term Chemical-Only Fertilization Induces a Diversity Decline and Deep Selection on the Soil Bacteria
Cited by: 41
Author(s): Qicheng Xu, Ning Ling, Huan Chen, Yinghua Duan, Shuang Wang, Qirong Shen, Philippe Vandenkoornhuyse
Software Mentions: 3
Published: about 6 years ago

10.3390/ijms20020415

Understanding Changes in Tomato Cell Walls in Roots and Fruits: The Contribution of Arbuscular Mycorrhizal Colonization
Cited by: 10
Author(s): Matteo Chialva, Jonatan U. Fangel, Mara Novero, Inès Zouari, Alessandra Salvioli di Fossalunga, William G. T. Willats, Paola Bonfante, Raffaella Balestrini
Software Mentions: 3
Published: over 7 years ago

10.3390/ma14195488

Impact of Zinc Oxide Nanoparticles on the Composition of Gut Microbiota in Healthy and Autism Spectrum Disorder Children
Cited by: 7
Author(s): Rongrong Yu, Temoor Ahmed, Hubiao Jiang, Guangming Zhou, Muchen Zhang, Luqiong Lv, Bin Li
Software Mentions: 3
Published: almost 5 years ago

10.7554/eLife.62813

Diversity and asynchrony in soil microbial communities stabilizes ecosystem functioning
Cited by: 78
Author(s): Cameron Wagg, Yann Hautier, Sarah Pellkofer, Samiran Banerjee, Bernhard Schmid, Marcel G. A. van der Heijden
Software Mentions: 3
Published: over 5 years ago

10.1186/s12862-020-01673-w

The roles of vicariance and isolation by distance in shaping biotic diversification across an ancient archipelago: evidence from a Seychelles caecilian amphibian
Cited by: 2
Author(s): Simon T. Maddock, Ronald A. Nussbaum, Julia J. Day, Leigh C. Latta, Mark P. Miller, Debra L. Fisk, Mark Wilkinson, Sara Rocha, David J. Gower, Michael E. Pfrender
Software Mentions: 3
Published: about 6 years ago

10.1128/mSystems.00367-20

Microbiome and Metagenome Analyses of a Closed Habitat during Human Occupation
Cited by: 3
Author(s): Ganesh Babu Malli Mohan, Ceth W. Parker, Camilla Urbaniak, Nitin Kumar Singh, A. D. Hood, Jeremiah J. Minich, Rob Knight, Michelle A. Rucker, Kasthuri Venkateswaran
Software Mentions: 3
Published: about 6 years ago

10.3389/fmicb.2018.01998

Intra-host Symbiont Diversity and Extended Symbiont Maintenance in Photosymbiotic Acantharea (Clade F)
Cited by: 14
Author(s): Margaret Mars Brisbin, Lisa Y. Mesrop, Mary M. Grossmann, Satoshi Mitarai
Software Mentions: 3
Published: about 8 years ago

10.3389/fmicb.2018.00579

Typical Soil Redox Processes in Pentachlorophenol Polluted Soil Following Biochar Addition
Cited by: 24
Author(s): Min Zhu, Lujun Zhang, Zheng Lu, Ying Zhuo, Jianming Xu, Yan He
Software Mentions: 3
Published: over 8 years ago

10.3389/fmicb.2016.00837

Differential Impacts of Willow and Mineral Fertilizer on Bacterial Communities and Biodegradation in Diesel Fuel Oil-Contaminated Soil
Cited by: 22
Author(s): Mary-Cathrine Leewis, Ondřej Uhlík, Serena Fraraccio, Kelly M. McFarlin, Anastasia Kottara, Catherine Glover, Tomáš Macek, Mary Beth Leigh
Software Mentions: 3
Published: over 10 years ago

10.3390/ma14164442

Influence of TiO2 Nanoparticles on the Resistance of Cementitious Composite Materials to the Action of Fungal Species
Cited by: 2
Author(s): Andreea Hegyi, Elvira Grebenişan, Adrian-Victor Lăzărescu, Vlad Stoian, Henriette Szilágyi
Software Mentions: 3
Published: about 5 years ago

10.1155/2014/857245

Intestinal Parasites Coinfection Does Not Alter Plasma Cytokines Profile Elicited in Acute Malaria in Subjects from Endemic Area of Brazil
Cited by: 13
Author(s): Juan Camilo Sánchez‐Arcila, Daiana de Souza Perce-da-Silva, Mariana Pinheiro Alves Vasconcelos, Rodrigo Nunes Rodrigues-da-Silva, Virgínia Araújo Pereira, Cesarino Junior Lima Aprígio, Cleoni Alves Mendes de Lima, Bruna de Paula Fonseca e Fonseca, Dalma Maria Banic, Josué da Costa Lima-Junior, Joseli Oliveira-Ferreira
Software Mentions: 3
Published: over 12 years ago

10.1186/s40168-019-0676-8

Unprecedented bacterial community richness in soybean nodules vary with cultivar and water status
Cited by: 44
Author(s): Hazem Sharaf, Richard R. Rodrigues, Jin-Young Moon, Bo Zhang, Kerri Mills, Mark A. Williams
Software Mentions: 3
Published: over 7 years ago

10.1111/cobi.13437

Using vertebrate environmental DNA from seawater in biomonitoring of marine habitats
Cited by: 65
Author(s): Eva Egelyng Sigsgaard, Felipe Torquato, Tobias Guldberg Frøslev, Alec B. M. Moore, Johan Molgard Sorensen, Pedro Range, Radhouane Ben‐Hamadou, Steffen Bach, Peter Rask Møller, Philip Francis Thomsen
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2016.00679

Diversity of Pico- to Mesoplankton along the 2000 km Salinity Gradient of the Baltic Sea
Cited by: 84
Author(s): Yue Hu, Bengt Karlson, Sophie Charvet, Anders F. Andersson
Software Mentions: 3
Published: over 10 years ago

10.1111/cobi.13289

Harnessing the potential of integrated systematics for conservation of taxonomically complex, megadiverse plant groups
Cited by: 26
Author(s): Eimear Nic Lughadha, Vanessa Graziele Staggemeier, Thaís Vasconcelos, Barnaby E. Walker, Cátia Canteiro, Eve Lucas
Software Mentions: 3
Published: over 7 years ago

10.7717/peerj.11744

Impacts of heat stress and storm events on the benthic communities of Kenting National Park (Taiwan)
Cited by: 7
Author(s): Lauriane Ribas-Deulofeu, Vianney Denis, Pierre-Alexandre Château, Chaolun Allen Chen
Software Mentions: 3
Published: about 5 years ago

10.3390/metabo9050096

Inhibitory Effects of Green Tea Polyphenols on Microbial Metabolism of Aromatic Amino Acids in Humans Revealed by Metabolomic Analysis
Cited by: 24
Author(s): Yuyin Zhou, Ning-Ning Zhang, Andrea Y. Arikawa, Chi Chen
Software Mentions: 3
Published: over 7 years ago

10.3389/fmicb.2014.00487

Aerobic methanotrophic communities at the Red Sea brine-seawater interface
Cited by: 28
Author(s): Rehab Z. Abdallah, Mustafa Adel, Amged Ouf, Ahmed A. Sayed, Mohamed A. Ghazy, Intikhab Álam, Magbubah Essack, Feras F. Lafi, Vladimir B. Bajic, Hamza A. El-Dorry, Rania Siam
Software Mentions: 3
Published: almost 12 years ago

10.3390/ani10091641

The Effect of Transitioning between Feeding Methods on the Gut Microbiota Dynamics of Yaks on the Qinghai–Tibet Plateau
Cited by: 11
Author(s): Xiaoling Zhang, Tianwei Xu, Xungang Wang, Yuanyue Geng, Hongjin Liu, Linyong Hu, Na Zhao, Shenghong Kang, Wan-Min Zhang, Shixiao Xu
Software Mentions: 3
Published: about 6 years ago

10.3389/fmicb.2020.00616

Soil Microbes Trade-Off Biogeochemical Cycling for Stress Tolerance Traits in Response to Year-Round Climate Change
Cited by: 34
Author(s): Maria O. Garcia, Pamela H. Templer, P. Sørensen, Rebecca Sanders‐DeMott, Peter M. Groffman, Jennifer M. Bhatnagar
Software Mentions: 3
Published: over 6 years ago

10.1186/s12862-016-0726-9

Wild cricket social networks show stability across generations
Cited by: 26
Author(s): David N. Fisher, Rolando Rodrı́guez-Muñoz, Tom Tregenza
Software Mentions: 3
Published: about 10 years ago

10.3390/ani11051335

Bacillus Subtilis 29784 as a Feed Additive for Broilers Shifts the Intestinal Microbial Composition and Supports the Production of Hypoxanthine and Nicotinic Acid
Cited by: 11
Author(s): Pearl Choi, Lamya Rhayat, Eric Pinloche, Estelle Devillard, Ellen De Paepe, Lynn Vanhaecke, Freddy Haesebrouck, Richard Ducatelle, Filip Van Immerseel, Evy Goossens
Software Mentions: 3
Published: over 5 years ago

10.1093/conphys/coaa140

Nutritional consequences of breeding away from riparian habitats in Bank Swallows: new evidence from multiple endogenous markers
Cited by: 18
Author(s): Corrine S. V. Génier, Christopher G. Guglielmo, Greg W. Mitchell, Myles Falconer, Keith A. Hobson
Software Mentions: 3
Published: over 5 years ago

10.1093/conphys/cov012

Selective logging: does the imprint remain on tree structure and composition after 45 years?
Cited by: 26
Author(s): Oyomoare L. Osazuwa‐Peters, Colin A. Chapman, Amy E. Zanne
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0149567

Diverse Effects of a Seven-Year Experimental Grassland Fragmentation on Major Invertebrate Groups
Cited by: 13
Author(s): Brigitte Braschler, Bruno Baur
Software Mentions: 3
Published: over 10 years ago

10.3389/fmicb.2021.676251

Dynamics of Soil Bacterial and Fungal Communities During the Secondary Succession Following Swidden Agriculture IN Lowland Forests
Cited by: 6
Author(s): Qiang Lin, Petr Baldrián, Lingjuan Li, Vojtěch Novotný, Petr Heděnec, Jaroslav Kukla, Ruma Umari, Lenka Mészárošová, Jan Frouz
Software Mentions: 3
Published: over 5 years ago

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