10.3390/microorganisms8101481

Environmental Influences of High-Density Agricultural Animal Operation on Human Forearm Skin Microflora
Cited by: 11
Author(s): Mengfei Peng, Debabrata Biswas
Software Mentions: 3
Published: almost 6 years ago

10.3389/fmicb.2020.00551

Crosstalk Between Female Gonadal Hormones and Vaginal Microbiota Across Various Phases of Women’s Gynecological Lifecycle
Cited by: 51
Author(s): Harrisham Kaur, Mitali Merchant, Mohammed Monzoorul Haque, Sharmila S. Mande
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0199291

Impact of chlorine dioxide disinfection of irrigation water on the epiphytic bacterial community of baby spinach and underlying soil
Cited by: 25
Author(s): Pilar Truchado, María I. Gil, Trevor Suslow, Ana Allende
Software Mentions: 3
Published: about 8 years ago

10.1002/ece3.5658

Not going with the flow: Locomotor activity does not constrain immunity in a wild fish
Cited by: 2
Author(s): Numair Masud, Rebecca Synnott, Pascal I. Hablützel, Ida M. Friberg, Joanne Cable, Joseph A. Jackson
Software Mentions: 3
Published: almost 7 years ago

10.1002/ece3.2550

The challenge of separating signatures of local adaptation from those of isolation by distance and colonization history: The case of two white pines
Cited by: 69
Author(s): Simon Nadeau, Patrick G. Meirmans, Sally N. Aitken, Kermit Ritland, Nathalie Isabel
Software Mentions: 3
Published: almost 10 years ago

10.3389/fmicb.2017.02088

Alternative Growth Promoters Modulate Broiler Gut Microbiome and Enhance Body Weight Gain
Cited by: 72
Author(s): Debabrata Biswas, Seon-Woo Kim, Bradd J. Haley, Jo Ann S. Van Kessel, Debabrata Biswas
Software Mentions: 3
Published: almost 9 years ago

10.3390/microorganisms9081704

The Sisal Virome: Uncovering the Viral Diversity of Agave Varieties Reveals New and Organ-Specific Viruses
Cited by: 3
Author(s): Gabriel Quintanilha-Peixoto, Paula Luize Camargos Fonseca, Fábio Trigo Raya, Marina Püpke Marone, Dener Eduardo Bortolini, Piotr A. Mieczkowski, Roenick Proveti Olmo, Marcelo Falsarella Carazzolle, Christian A. Voigt, Ana Cristina Fermino Soares, Gonçalo Amarante Guimarães Pereira, Aristóteles Goés-Neto, Eric Roberto Guimarães Rocha Aguiar
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0163482

Using a Control to Better Understand Phyllosphere Microbiota
Cited by: 44
Author(s): Andrea Ottesen, S. Gorham, Elizabeth Reed, Michael J. Newell, Padmini Ramachandran, Travis Canida, Marc W. Allard, Peter W. Evans, Eric W. Brown, James R. White
Software Mentions: 3
Published: almost 10 years ago

10.1038/s41598-019-46535-8

Insights into the Microbiome of Breast Implants and Periprosthetic Tissue in Breast Implant-Associated Anaplastic Large Cell Lymphoma
Cited by: 70
Author(s): Jennifer N. Walker, Blake Hanson, Chloe L. Pinkner, Shelby Simar, Jerome S. Pinkner, Rohan Parikh, Mark W. Clemens, Scott J. Hultgren, Terence M. Myckatyn
Software Mentions: 3
Published: about 7 years ago

10.3389/fmicb.2020.605622

Pathogen Infection and Host-Resistance Interactively Affect Root-Associated Fungal Communities in Watermelon
Cited by: 8
Author(s): Lihui Xu, Mogens Nicolaisen, John Larsen, Rong Zeng, Shigang Gao, Fangyin Dai
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41396-021-00897-y

Viromes outperform total metagenomes in revealing the spatiotemporal patterns of agricultural soil viral communities
Cited by: 79
Author(s): Christian Santos‐Medellín, Laura Zinke, Anneliek M. ter Horst, Danielle L. Gelardi, Sanjai J. Parikh, Joanne B. Emerson
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-90799-y

KAUST Metagenomic Analysis Platform (KMAP), enabling access to massive analytics of re-annotated metagenomic data
Cited by: 1
Author(s): Intikhab Álam, Allan Kamau, David Kamanda Ngugi, Takashi Gojobori, Carlos M. Duarte, Vladimir B. Bajić
Software Mentions: 3
Published: over 5 years ago

10.1002/ece3.3060

The influence of breeding phenology on the genetic structure of four pond‐breeding salamanders
Cited by: 14
Author(s): Jacob J. Burkhart, William E. Peterman, Emily R. Brocato, Kimberly M. Romine, M. Madeline S. Willis, Brittany H. Ousterhout, Thomas L. Anderson, Dana L. Drake, Freya E. Rowland, Raymond D. Semlitsch, Lori S. Eggert
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0053656

Methyl Fluoride Affects Methanogenesis Rather than Community Composition of Methanogenic Archaea in a Rice Field Soil
Cited by: 16
Author(s): Anne Daebeler, Martina Gansen, Peter Frenzel
Software Mentions: 3
Published: over 13 years ago

10.3389/fmicb.2020.571159

Niche Specialization and Functional Overlap of Bamboo Leaf and Root Microbiota
Cited by: 8
Author(s): Ying Zheng, Xinchun Lin
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0188445

Pericarpial nectary-visiting ants do not provide fruit protection against pre-dispersal seed predators regardless of ant species composition and resource availability
Cited by: 10
Author(s): Priscila Andre Sanz‐Veiga, Leonardo Ré Jorge, Santiago Benitez‐Vieyra, Felipe W. Amorim
Software Mentions: 3
Published: almost 9 years ago

10.1002/ece3.4390

Local factors associated with on‐host flea distributions on prairie dog colonies
Cited by: 25
Author(s): Robin E. Russell, Rachel C. Abbott, Daniel W. Tripp, Tonie E. Rocke
Software Mentions: 3
Published: about 8 years ago

10.7717/peerj.9538

A comparison of lodgepole and spruce needle chemistry impacts on terrestrial biogeochemical processes during isolated decomposition
Cited by: 5
Author(s): Laura Leonard, Kristin M. Mikkelson, Zhao Hao, Eoin L. Brodie, Kenneth H. Williams, Jonathan O. Sharp
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0220619

Gut microbiome response to a modern Paleolithic diet in a Western lifestyle context
Cited by: 55
Author(s): Monica Barone, Silvia Turroni, Simone Rampelli, Matteo Soverini, Federica D’Amico, Elena Biagi, Patrizia Brigidi, Emidio Troiani, Marco Candela
Software Mentions: 3
Published: about 7 years ago

10.1002/ece3.7568

Temporal patterns of forest seedling emergence across different disturbance histories
Cited by: 4
Author(s): Elle Bowd, Lachlan McBurney, David Blair, David B. Lindenmayer
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0079035

Microbial Community Functional Change during Vertebrate Carrion Decomposition
Cited by: 132
Author(s): Jennifer L. Pechal, Tawni L. Crippen, Aaron M. Tarone, A. J. Lewis, Jeffery K. Tomberlin, M. Eric Benbow
Software Mentions: 3
Published: almost 13 years ago

10.1371/journal.pone.0234905

Top predator reveals the stability of prey community in the western subarctic Pacific
Cited by: 1
Author(s): Dongming Lin, Xinjun Chen
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2019.01743

Gut Microbiome Biomarkers and Functional Diversity Within an Amazonian Semi-Nomadic Hunter–Gatherer Group
Cited by: 27
Author(s): Liliane Costa Conteville, Joseli Oliveira-Ferreira, Ana Carolina Paulo Vicente
Software Mentions: 3
Published: about 7 years ago

10.7554/eLife.60608

MetaHiC phage-bacteria infection network reveals active cycling phages of the healthy human gut
Cited by: 44
Author(s): Martial Marbouty, Agnès Thierry, Gaël A. Millot, Romain Koszul
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0221037

Mycorrhizal response in crop versus wild plants
Cited by: 12
Author(s): Vasilis Kokkoris, Chantal Hamel, Miranda M. Hart
Software Mentions: 3
Published: about 7 years ago

10.1111/1462-2920.15232

Putative degraders of low‐density polyethylene‐derived compounds are ubiquitous members of plastic‐associated bacterial communities in the marine environment
Cited by: 14
Author(s): Maria Pinto, Paula Polania Zenner, Teresa M. Langer, Jesse Patrick Harrison, Meinhard Simon, Marta M. Varela, Gerhard J. Herndl
Software Mentions: 3
Published: almost 6 years ago

10.1111/1462-2920.14882

Structure and ecological function of the soil microbiome affecting plant–soil feedbacks in the presence of a soil‐borne pathogen
Cited by: 33
Author(s): S. Emilia Hannula, Hui Ma, Juan E. Pérez‐Jaramillo, Ana Pineda, T. Martijn Bezemer
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0129823

Grassland Arthropods Are Controlled by Direct and Indirect Interactions with Cattle but Are Largely Unaffected by Plant Provenance
Cited by: 13
Author(s): Kelly A. Farrell, W. Stanley Harpole, Cláudia Stein, Katharine N. Suding, Elizabeth T. Borer
Software Mentions: 3
Published: about 11 years ago

10.1111/1462-2920.15546

A novel methoxydotrophic metabolism discovered in the hyperthermophilic archaeon <i>Archaeoglobus fulgidus</i>
Cited by: 9
Author(s): Cornelia U. Welte, R.M. de Graaf, Paula Dalcin Martins, Robert S. Jansen, Mike S. M. Jetten, Julia M. Kurth
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0189796

A confidence interval analysis of sampling effort, sequencing depth, and taxonomic resolution of fungal community ecology in the era of high-throughput sequencing
Cited by: 5
Author(s): Ryoko Oono
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0192008

Effects of an EPSPS-transgenic soybean line ZUTS31 on root-associated bacterial communities during field growth
Cited by: 23
Author(s): Guihua Lü, Cheng-Yi Tang, Xiao-Mei Hua, Jing Cheng, Gu-Hao Wang, Yuxia Zhu, Zhang Li-ya, Huixia Shou, Jinliang Qi, Yonghua Yang
Software Mentions: 3
Published: over 8 years ago

10.7554/eLife.62813

Diversity and asynchrony in soil microbial communities stabilizes ecosystem functioning
Cited by: 78
Author(s): Cameron Wagg, Yann Hautier, Sarah Pellkofer, Samiran Banerjee, Bernhard Schmid, Marcel G. A. van der Heijden
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2014.00668

Contrasting assembly processes in a bacterial metacommunity along a desiccation gradient
Cited by: 28
Author(s): Ángel Valverde, Thulani P. Makhalanyane, Don A. Cowan
Software Mentions: 3
Published: almost 12 years ago

10.1371/journal.pone.0147975

Why Do Floral Perfumes Become Different? Region-Specific Selection on Floral Scent in a Terrestrial Orchid
Cited by: 66
Author(s): Karin Gross, Mimi Sun, Florian P. Schiestl
Software Mentions: 3
Published: over 10 years ago

10.1038/ismej.2015.245

Shifts in diversity and function of lake bacterial communities upon glacier retreat
Cited by: 80
Author(s): Hannes Peter, Rubén Sommaruga
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0161836

Microbial Characterization of Qatari Barchan Sand Dunes
Cited by: 16
Author(s): Sara Abdul Majid, Michael F. Graw, Aspassia D. Chatziefthimiou, Hanh Thuy Thi Nguyen, Renee Richer, Michel Y. Louge, Ali A. Sultan, Patrick D. Schloss, Anthony G. Hay
Software Mentions: 3
Published: almost 10 years ago

10.1186/s40793-021-00383-0

Changes in the root-associated bacteria of sorghum are driven by the combined effects of salt and sorghum development
Cited by: 17
Author(s): Yukun Gao, Jianghui Cui, Ge Ren, Wei Shilin, Yang Puyuan, Congpei Yin, Liang Hongkai, Chang Jin-hua
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0111985

Seasonal Dynamics of Atlantic Herring (Clupea harengus L.) Populations Spawning in the Vicinity of Marginal Habitats
Cited by: 19
Author(s): Florian Eggers, Aril Slotte, Lísa Anne Libungan, Ane Johannessen, Cecilie Kvamme, Even Moland, Esben Moland Olsen, Richard D.M. Nash
Software Mentions: 3
Published: almost 12 years ago

10.1038/ismej.2016.40

Defining the microbial transcriptional response to colitis through integrated host and microbiome profiling
Cited by: 37
Author(s): Nicholas E. Ilott, Julia Bollrath, Camille Danne, Chris Schiering, Matthew Shale, Krista Adelmann, Thomas Krausgruber, Andreas Heger, David Sims, Fiona Powrie
Software Mentions: 3
Published: over 10 years ago

10.1186/s40793-019-0347-1

The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples
Cited by: 58
Author(s): Hyun S. Gweon, Liam P. Shaw, Jeremy Swann, Nicola De Maio, Manal AbuOun, René Niehus, Alasdair T. M. Hubbard, Michael J. Bowes, Mark Bailey, Tim Peto, Sarah Hoosdally, A Sarah Walker, Robert Sebra, Derrick W. Crook, Muna F. Anjum, Daniel S. Read, Nicole Stoesser
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0038876

Mosaic-Level Inference of the Impact of Land Cover Changes in Agricultural Landscapes on Biodiversity: A Case-Study with a Threatened Grassland Bird
Cited by: 32
Author(s): Francisco Moreira, Joao Silva, Beatriz Estanque, Jorge M. Palmeirim, Miguel Lecoq, Manuel Pinto, Domingos Leitão, Iván Azael Martínez Alonso, Rui Pedroso, Eduardo de Basto e Santos, Teresa Catry, Patrı́cia Silva, Inês Henriques, Ana Delgado
Software Mentions: 3
Published: over 14 years ago

10.1371/journal.pone.0248863

Copepods and ostracods associated with bromeliads in the Yucatán Peninsula, Mexico
Cited by: 3
Author(s): Nancy F. Mercado-Salas, Sahar Khodami, Pedro Martínez Arbizu
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0198236

Diversity of root-knot nematodes of the genus Meloidogyne Göeldi, 1892 (Nematoda: Meloidogynidae) associated with olive plants and environmental cues regarding their distribution in southern Spain
Cited by: 26
Author(s): Antonio Archidona‐Yuste, Carolina Cantalapiedra‐Navarrete, Gracia Liébanas, Hava F. Rapoport, Pablo Castillo, Juan E. Palomares-Rius
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pone.0185590

Comparative characterization of bacterial communities in geese fed all-grass or high-grain diets
Cited by: 15
Author(s): Qi Xu, Xi Yuan, Tiantian Gu, Yang Li, Wangcheng Dai, Xiaoxia Shen, Yadong Song, Yang Zhang, Wenming Zhao, Guobin Chang, Guohong Chen
Software Mentions: 3
Published: almost 9 years ago

10.3389/fmicb.2020.00930

Water Treatment Effect, Microbial Community Structure, and Metabolic Characteristics in a Field-Scale Aquaculture Wastewater Treatment System
Cited by: 17
Author(s): Zhifei Li, Ermeng Yu, Kai Zhang, Wangbao Gong, Yun Xia, Jingjing Tian, Guangjun Wang, Jun Xie
Software Mentions: 3
Published: over 6 years ago

10.1038/s41396-020-00768-y

Temperature transcends partner specificity in the symbiosis establishment of a cnidarian
Cited by: 14
Author(s): Marcela Herrera, Shannon G. Klein, Sara Campana, Jit Ern Chen, A Prasanna, Carlos M. Duarte, Manuel Aranda
Software Mentions: 3
Published: about 6 years ago

10.3389/fmicb.2019.02951

The Composition and Phosphorus Cycling Potential of Bacterial Communities Associated With Hyphae of Penicillium in Soil Are Strongly Affected by Soil Origin
Cited by: 14
Author(s): Xiuli Hao, Yan Zhu, Ole Nybroe, Mette Haubjerg Nicolaisen
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0240061

Ground-dwelling invertebrate diversity in domestic gardens along a rural-urban gradient: Landscape characteristics are more important than garden characteristics
Cited by: 15
Author(s): Brigitte Braschler, José D. Gilgado, Valérie Zwahlen, Hans‐Peter Rusterholz, Sascha Buchholz, Bruno Baur
Software Mentions: 3
Published: almost 6 years ago

10.1007/s11356-020-11437-0

250-year records of mercury and trace element deposition in two lakes from Cajas National Park, SW Ecuadorian Andes
Cited by: 7
Author(s): Tobias Schneider, Benjamin A. Musa Bandowe, Moritz Bigalke, Adrien Mestrot, Henrietta Hampel, Pablo V. Mosquera, Lea Fränkl, Giulia Wienhues, Hendrik Vogel, Wojciech Tylmann, Martín Grosjean
Software Mentions: 3
Published: almost 6 years ago

10.3389/fmicb.2021.620220

Different Active Microbial Communities in Two Contrasted Subantarctic Fjords
Cited by: 1
Author(s): Claudia Maturana-Martínez, Camila Fernández, Humberto E. González, Pierre E. Galand
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0142603

Methanosarcina Play an Important Role in Anaerobic Co-Digestion of the Seaweed Ulva lactuca: Taxonomy and Predicted Metabolism of Functional Microbial Communities
Cited by: 33
Author(s): Jamie A. FitzGerald, Eoin Allen, David Wall, Stephen A. Jackson, Jerry D. Murphy, Alan D. W. Dobson
Software Mentions: 3
Published: almost 11 years ago

10.3389/fmicb.2020.557980

Environmental Nutrients Alter Bacterial and Fungal Gut Microbiomes in the Common Meadow Katydid, Orchelimum vulgare
Cited by: 7
Author(s): Melani K. Muratore, Yvonne Sun, Chelse M. Prather
Software Mentions: 3
Published: almost 6 years ago

10.1002/etc.4317

Multiyear monitoring of bird communities in chlorpyrifos‐treated orchards in Spain and the United Kingdom: Spatial and temporal trends in species composition, abundance, and site fidelity
Cited by: 2
Author(s): Ralf Dittrich, Benedikt Giessing, María Martínez Benito, Anja Russ, Christian Wolf, Manousos Foudoulakis, Steve Norman
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0019288

Outcomes of Brood Parasite–Host Interactions Mediated by Egg Matching: Common Cuckoos Cuculus canorus versus Fringilla Finches
Cited by: 17
Author(s): Johan Reinert Vikan, Frode Fossøy, Esa Huhta, Arne Moksnes, Eivin Røskaft, Bård G. Stokke
Software Mentions: 3
Published: over 15 years ago

10.1038/ismej.2013.127

Bacterial profiling of White Plague Disease in a comparative coral species framework
Cited by: 115
Author(s): Cornelia Roder, Chatchanit Arif, Till Bayer, Manuel Aranda, Camille Daniels, Ahmed A. Shibl, Suchana Chavanich, Christian R. Voolstra
Software Mentions: 3
Published: about 13 years ago

10.1371/journal.pone.0107534

Application of Ion Torrent Sequencing to the Assessment of the Effect of Alkali Ballast Water Treatment on Microbial Community Diversity
Cited by: 22
Author(s): Masanori Fujimoto, Gregory A Moyerbrailean, Sifat Noman, Jason P. Gizicki, Michal L. Ram, Phyllis A. Green, Jeffrey L. Ram
Software Mentions: 3
Published: about 12 years ago

10.1038/s41396-020-00801-0

Relationships between nitrogen cycling microbial community abundance and composition reveal the indirect effect of soil pH on oak decline
Cited by: 47
Author(s): Kelly Scarlett, Sandra Denman, Dave R. Clark, Jack Forster, Elena Vanguelova, Nigel L. Brown, Corinne Whitby
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0078248

Sharing of Diverse Mycorrhizal and Root-Endophytic Fungi among Plant Species in an Oak-Dominated Cool–Temperate Forest
Cited by: 63
Author(s): Hirokazu Toju, Satoshi Yamamoto, Hirotoshi Sato, Akifumi S. Tanabe
Software Mentions: 3
Published: almost 13 years ago

10.3389/fmicb.2018.02836

Environmental Drivers of Free-Living vs. Particle-Attached Bacterial Community Composition in the Mauritania Upwelling System
Cited by: 45
Author(s): Jennifer Bachmann, Tabea Heimbach, Christiane Hassenrück, Gérmán A. Kopprio, Morten Hvitfeldt Iversen, Hans Peter Grossart, Astrid Gärdes
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41431-019-0557-4

The paternal and maternal genetic history of Vietnamese populations
Cited by: 20
Author(s): Enrico Macholdt, Liliana Arias, Nguyễn Thùy Dương, Nguyễn Đăng Tôn, Nguyễn Văn Phòng, Roland Schröder, Brigitte Pakendorf, Nông Văn Hải, Mark Stoneking
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-021-89353-7

Strong variations in urban allergenicity riskscapes due to poor knowledge of tree pollen allergenic potential
Cited by: 15
Author(s): Rita Sousa-Silva, Audrey Smargiassi, Daniel Kneeshaw, Jérôme Dupras, Kate Zinszer, Alain Paquette
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-89516-6

The lower respiratory tract microbiome of critically ill patients with COVID-19
Cited by: 42
Author(s): Paolo Gaibani, Elisa Viciani, Michele Bartoletti, Russell E. Lewis, Tommaso Tonetti, Donatella Lombardo, Andréa Castagnetti, Federica Bovo, Clara Solera Horna, Marco Ranieri, Pierluigi Viale, Maria Carla Re, Simone Ambretti
Software Mentions: 3
Published: over 5 years ago

10.3390/microorganisms7060160

The Biodiversity and Geochemistry of Cryoconite Holes in Queen Maud Land, East Antarctica
Cited by: 17
Author(s): Stefanie Lutz, Lori A. Ziolkowski, Liane G. Benning
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-019-48611-5

Soil acidification in continuously cropped tobacco alters bacterial community structure and diversity via the accumulation of phenolic acids
Cited by: 40
Author(s): Yuxiang Bai, Ge Wang, Ya-Dong Cheng, Puyou Shi, Chengcui Yang, Heng Yang, Zhaoli Xu
Software Mentions: 3
Published: about 7 years ago

10.2807/1560-7917.ES.2019.24.6.1700774

Impact of rotavirus vaccination on rotavirus genotype distribution and diversity in England, September 2006 to August 2016
Cited by: 34
Author(s): Daniel Hungerford, David J. Allen, Sameena Nawaz, Sarah Collins, Shamez Ladhani, Roberto Vivancos, Miren Iturriza‐Gómara
Software Mentions: 3
Published: over 7 years ago

10.1155/2020/3291853

Transcriptomic Analysis of Fuzi Lizhong Decoction for the Treatment of Stomach Ulcers
Cited by: 2
Author(s): Xin Yang, Haijun Wang, Lei Xu
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-019-49462-w

Discrepant gut microbiota markers for the classification of obesity-related metabolic abnormalities
Cited by: 200
Author(s): Qiang Zeng, Dongfang Li, Yuan He, Yinhu Li, Zhenyu Yang, Xiaolan Zhao, Yanhong Liu, Yu Wang, Jing Sun, Xin Feng, Fei Wang, Jiaxing Chen, Yuejie Zheng, Yonghong Yang, Xiaogang Sun, Ximing Xu, Daxi Wang, Toby Kenney, Yiqi Jiang, Hong Gu, Yongli Li, Ke Zhou, Shuai Cheng Li, Wenkui Dai
Software Mentions: 3
Published: about 7 years ago

10.1155/2016/6592363

Effect of Gender on the Knowledge of Medicinal Plants: Systematic Review and Meta-Analysis
Cited by: 60
Author(s): Wendy Marisol Torres­-Avilez, Patrícia Muniz de Medeiros, Ulysses Paulino Albuquerque
Software Mentions: 3
Published: over 10 years ago

10.3390/microorganisms8122022

Comparative Microbiome and Metabolome Analyses of the Marine Tunicate Ciona intestinalis from Native and Invaded Habitats
Cited by: 15
Author(s): Caroline Utermann, Martina Blümel, Kathrin Busch, Larissa Buedenbender, Ya‐Ping Lin, Brad Haltli, Russell G. Kerr, Elizabeta Briski, Ute Hentschel, Deniz Taşdemir
Software Mentions: 3
Published: almost 6 years ago

10.1111/eva.13231

Leveraging genomics to understand threats to migratory birds
Cited by: 4
Author(s): Brenda Larison, Alec R. Lindsay, Christen M. Bossu, Michael D. Sorenson, Jonas Kaplan, David C. Evers, James D. Paruk, Jeffrey M. DaCosta, Thomas B. Smith, Kristen Ruegg
Software Mentions: 3
Published: over 5 years ago

10.1111/eva.12384

Genetic consequences of selection cutting on sugar maple ( Acer saccharum Marshall)
Cited by: 2
Author(s): Noémie Graignic, Francine Tremblay, Yves Bergeron
Software Mentions: 3
Published: over 10 years ago

10.3389/fmicb.2021.668238

High Potential for Biomass-Degrading Enzymes Revealed by Hot Spring Metagenomics
Cited by: 14
Author(s): Nicholas J. Reichart, Robert M. Bowers, Tanja Woyke, Roland Hatzenpichler
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0132538

Optimising Regionalisation Techniques: Identifying Centres of Endemism in the Extraordinarily Endemic-Rich Cape Floristic Region
Cited by: 19
Author(s): P. Bradshaw, Jonathan F. Colville, H. Peter Linder
Software Mentions: 3
Published: about 11 years ago

10.1371/journal.pone.0204445

Temporal dynamics in animal community assembly during post-logging succession in boreal forest
Cited by: 13
Author(s): Hélène Le Borgne, Christian Hébert, Angélique Dupuch, Orphé Bichet, David Pinaud, Daniel Fortin
Software Mentions: 3
Published: almost 8 years ago

10.3390/microorganisms8121984

Temporal Resistome and Microbial Community Dynamics in an Intensive Aquaculture Facility with Prophylactic Antimicrobial Treatment
Cited by: 15
Author(s): Hemant J. Patil, Joao Gatica, Avihai Zolti, Ayana Benet-Perelberg, Alon Naor, Barak Dror, Ashraf Al-Ashhab, Sophi Marman, Nur A. Hasan, Rita R. Colwell, Daniel Sher, Dror Minz, Eddie Cytryn
Software Mentions: 3
Published: almost 6 years ago

10.7717/peerj.3532

Fungi associated with mesophotic macroalgae from the ‘Au‘au Channel, west Maui are differentiated by host and overlap terrestrial communities
Cited by: 23
Author(s): Benjamin J. Wainwright, Geoffrey Zahn, Heather L. Spalding, Alison R. Sherwood, Celia M. Smith, Anthony S. Amend
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.pone.0209102

Effects of macroconsumers on benthic communities: Rapid increases in dry-season accrual of calcium in a tropical karst stream
Cited by: 3
Author(s): Elaine Cristina Corrêa, Fábio de Oliveira Roque, Ryan M. Utz, Jonas de Sousa Correa, Franco L. Souza, Alan P. Covich
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0235223

History of breastfeeding but not mode of delivery shapes the gut microbiome in childhood
Cited by: 13
Author(s): Camille C. Cioffi, Hannah F. Tavalire, Jenaè M. Neiderhiser, B. J. M. Bohannan, Leslie D. Leve
Software Mentions: 3
Published: about 6 years ago

10.3390/microorganisms9030659

New Insights on the Zeugodacus cucurbitae (Coquillett) Bacteriome
Cited by: 4
Author(s): Elias Asimakis, Panagiota Stathopoulou, Apostolis Sapounas, Kanjana Khaeso, Costas Batargias, Mahfuza Khan, George Tsiamis
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0149564

Characterization of the Gut Microbial Community of Obese Patients Following a Weight-Loss Intervention Using Whole Metagenome Shotgun Sequencing
Cited by: 197
Author(s): Sandrine Louis, Rewati-Mukund Tappu, Antje Damms-Machado, Daniel H. Huson, Stephan C. Bischoff
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0245221

Pastoralism in the highest peaks: Role of the traditional grazing systems in maintaining biodiversity and ecosystem function in the alpine Himalaya
Cited by: 26
Author(s): Tenzing Ingty
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2021.647089

Bacterial Communities Associated With Four Blooming Scyphozoan Jellyfish: Potential Species-Specific Consequences for Marine Organisms and Humans Health
Cited by: 7
Author(s): Saijun Peng, Hao Wu, Yongxue Li, Lei Wang, Tingting Sun, Jianmin Zhao, Zhibao Dong
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0248806

Soil bacterial communities and their associated functions for forest restoration on a limestone mine in northern Thailand
Cited by: 11
Author(s): Chakriya Sansupa, Witoon Purahong, Tesfaye Wubet, Pimonrat Tiansawat, Wasu Pathom-aree, Neung Teaumroong, Panuwan Chantawannakul, François Buscot, Stephen Elliott, Terd Disayathanoowat
Software Mentions: 3
Published: over 5 years ago

10.3390/microorganisms9071490

Composition and Functions of the Gut Microbiome in Pediatric Obesity: Relationships with Markers of Insulin Resistance
Cited by: 13
Author(s): Camila E. Orsso, Ye Peng, Edward C. Deehan, Qiming Tan, Catherine J. Field, Karen Madsen, Jens Walter, Carla M. Prado, Hein Min Tun, Andrea M. Haqq
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0026556

Differences among Major Taxa in the Extent of Ecological Knowledge across Four Major Ecosystems
Cited by: 23
Author(s): Rebecca Fisher, Nancy­ Knowlton­, Russell E. Brainard, M. Julian Caley
Software Mentions: 3
Published: almost 15 years ago

10.1111/eva.12877

Northern European <i>Salmo trutta</i> (L.) populations are genetically divergent across geographical regions and environmental gradients
Cited by: 23
Author(s): Dorte Bekkevold, Johann Höjesjö, Einar Eg Nielsen, David Aldvén, Thomas Damm Als, Marte Sodeland, Matthew Kent, Sigbjørn Lien, Michael Møller Hansen
Software Mentions: 3
Published: almost 7 years ago

10.3389/fmicb.2020.586148

Changes in Activity and Community Composition Shape Bacterial Responses to Size-Fractionated Marine DOM
Cited by: 8
Author(s): Marta M. Varela, Tamara Rodríguez‐Ramos, Elisa Guerrero-Feijóo, Mar Nieto‐Cid
Software Mentions: 3
Published: almost 6 years ago

10.3390/microorganisms8091370

Homogenization of Endosymbiont Communities Hosted by Equatorial Corals during the 2016 Mass Bleaching Event
Cited by: 7
Author(s): Sudhanshi S. Jain, Lutfi Afiq‐Rosli, Bar Feldman, Oren Levy, Jun Wei Phua, Benjamin J. Wainwright, Danwei Huang
Software Mentions: 3
Published: about 6 years ago

10.3390/microorganisms9081788

Effects of Age, Diet CP, NDF, EE, and Starch on the Rumen Bacteria Community and Function in Dairy Cattle
Cited by: 9
Author(s): Yangyi Hao, Yue Gong, Shuai Huang, Shoukun Ji, Wei Wang, Yajing Wang, Hongjian Yang, Zhijun Cao, Shengli Li
Software Mentions: 3
Published: about 5 years ago

10.1111/eva.12658

Structural and compositional mismatch between captive and wild Atlantic salmon (<i>Salmo salar</i>) parrs’ gut microbiota highlights the relevance of integrating molecular ecology for management and conservation methods
Cited by: 30
Author(s): Camille Lavoie, Maxime Courcelle, Baptise Redivo, Nicolas Derôme
Software Mentions: 3
Published: about 8 years ago

10.1126/sciadv.aba2578

Biodiversity intervention enhances immune regulation and health-associated commensal microbiota among daycare children
Cited by: 150
Author(s): Marja I. Roslund, Riikka Puhakka, Mira Grönroos, Noora Nurminen, Sami Oikarinen, Ahmad Mahfuz Gazali, Ondřej Cinek, Lenka Kramná, Nathan Siter, Heli K. Vari, Laura Soininen, Nan Hui, Juho Rajaniemi, Tuure Kinnunen, Olli H. Laitinen, Heikki Hyöty, Aki Sinkkonen
Software Mentions: 3
Published: almost 6 years ago

10.1111/eva.12446

Managing cryptic biodiversity: Fine‐scale intralacustrine speciation along a benthic gradient in Alpine whitefish (<i>Coregonus</i> spp.)
Cited by: 32
Author(s): Alan G. Hudson, Baenz Lundsgaard-Hansen, Kay Lucek, Pascal Vonlanthen, Ole Seehausen
Software Mentions: 3
Published: over 9 years ago

10.7717/peerj.4135

Multi-scale and multi-site resampling of a study area in spatial genetics: implications for flying insect species
Cited by: 5
Author(s): Julien Haran, Jean‐Pierre Rossi, J. A. Pajares, Luís Bonifácio, Pedro Naves, Alain Roques, Géraldine Roux
Software Mentions: 3
Published: almost 9 years ago

10.7717/peerj.6471

A simulation framework for evaluating multi-stage sampling designs in populations with spatially structured traits
Cited by: 4
Author(s): Patricia Puerta, Lorenzo Ciannelli, Becky Johnson
Software Mentions: 3
Published: over 7 years ago

10.1111/eva.12934

Prior adaptation of parasitoids improves biological control of symbiont‐protected pests
Cited by: 13
Author(s): Silvan Rossbacher, Christoph Vorburger
Software Mentions: 3
Published: over 6 years ago

10.1016/j.xpro.2020.100061

Protocol for Projecting Allele Frequency Change under Future Climate Change at Adaptive-Associated Loci
Cited by: 4
Author(s): Meghan Blumstein, Andrew D. Richardson, David J. Weston, Jin Zhang, Wellington Muchero, Robin Hopkins
Software Mentions: 3
Published: about 6 years ago

10.3389/fmicb.2020.578600

A Curricular Bioinformatics Approach to Teaching Undergraduates to Analyze Metagenomic Datasets Using R
Cited by: 5
Author(s): Anne Kruchten
Software Mentions: 3
Published: about 6 years ago

10.1186/s12931-019-1080-4

Chronic obstructive pulmonary disease upper airway microbiota alpha diversity is associated with exacerbation phenotype: a case-control observational study
Cited by: 29
Author(s): Alexa A. Pragman, Katherine A. Knutson, Trevor Gould, Richard E. Isaacson, Cavan Reilly, Christine Wendt
Software Mentions: 3
Published: over 7 years ago

10.3389/fmicb.2017.00785

Response of Methanogenic Microbial Communities to Desiccation Stress in Flooded and Rain-Fed Paddy Soil from Thailand
Cited by: 31
Author(s): Andreas Reim, Marcela Hernández, Melanie Klose, Amnat Chidthaisong, Monthira Yuttitham, Ralf Conrad
Software Mentions: 3
Published: over 9 years ago

10.1186/s12931-018-0878-9

Smoking is associated with quantifiable differences in the human lung DNA virome and metabolome
Cited by: 26
Author(s): Ann C. Gregory, Matthew B. Sullivan, Leopoldo N. Segal, Brian C. Keller
Software Mentions: 3
Published: about 8 years ago