cran: vegan | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2015.01057

Specific microbial gene abundances and soil parameters contribute to C, N, and greenhouse gas process rates after land use change in Southern Amazonian Soils
Cited by: 75
Author(s): Daniel R. Lammel, Brigitte Josefine Feigl, Carlos C. Cerri, Klaus Nüsslein
Software Mentions: 4
Published: almost 11 years ago

10.3389/fmicb.2018.02345

The Endophytic Mycobiome of European Ash and Sycamore Maple Leaves – Geographic Patterns, Host Specificity and Influence of Ash Dieback
Cited by: 44
Author(s): Markus Schlegel, Valentin Queloz, Thomas N. Sieber
Software Mentions: 4
Published: almost 8 years ago

10.3389/fmicb.2020.00980

Comparison of Bacterial and Fungal Composition and Their Chemical Interaction in Free Tropospheric Air and Snow Over an Entire Winter Season at Mount Sonnblick, Austria
Cited by: 11
Author(s): Nora Els, Marion Greilinger, Michael Reisecker, Romie Tignat-Perrier, Kathrin Baumann‐Stanzer, Anne Kasper-Giebl, Birgit Sattler, Catherine Larose
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2021.658927

Implications of Climate Change: How Does Increased Water Temperature Influence Biofilm and Water Quality of Chlorinated Drinking Water Distribution Systems?
Cited by: 14
Author(s): Carolina Calero Preciado, Joby Boxall, Víctor Soria‐Carrasco, Santiago Martínez, Isabel Douterelo
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2020.00581

The Potato Yam Phyllosphere Ectosymbiont Paraburkholderia sp. Msb3 Is a Potent Growth Promotor in Tomato
Cited by: 16
Author(s): Johannes B Herpell, Florian Schindler, Mersad Bejtović, Lena Fragner, Bocar Diallo, Anke Bellaire, Susanne Kublik, Bärbel U. Foesel, Silvia Gschwendtner, Melina Kerou, Michael Schloter, Wolfram Weckwerth
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2018.00298

Environmental and Host Effects on Skin Bacterial Community Composition in Panamanian Frogs
Cited by: 40
Author(s): Brandon J. Varela, David Lesbarrères, Roberto Ibáñez, David M. Green
Software Mentions: 4
Published: over 8 years ago

10.3389/fmicb.2016.00685

Concentration of Petroleum-Hydrocarbon Contamination Shapes Fungal Endophytic Community Structure in Plant Roots
Cited by: 20
Author(s): Guillaume Bourdel, Alice Roy‐Bolduc, Marc St‐Arnaud, Mohamed Hijri
Software Mentions: 4
Published: over 10 years ago

10.3389/fmicb.2019.00170

Electroactive Bacteria Associated With Stainless Steel Ennoblement in Seawater
Cited by: 18
Author(s): Florian Trigodet, Nicolas Larché, Hilary G. Morrison, Mohamed Jebbar, Dominique Thierry, Loïs Maignien
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2021.675798

Using Plate-Wash PCR and High-Throughput Sequencing to Measure Cultivated Diversity for Natural Product Discovery Efforts
Cited by: 4
Author(s): Emily N. Junkins, Bradley S. Stevenson
Software Mentions: 4
Published: about 5 years ago

10.3389/fvets.2020.00126

Non-invasive Assessment of Fecal Stress Biomarkers in Hunting Dogs During Exercise and at Rest
Cited by: 12
Author(s): Augusta Zannoni, Marco Pietra, Alba Gaspardo, Pier Attilio Accorsi, Monica Barone, Silvia Turroni, Luca Laghi, Chenglin Zhu, Patrizia Brigidi, Monica Forni
Software Mentions: 4
Published: over 6 years ago

10.3389/fvets.2018.00324

Developing Farm-Level Post-vaccination Sero-Monitoring Systems for H5N1 Highly Pathogenic Avian Influenza in an Endemically Infected Country
Cited by: 0
Author(s): Peter A. Durr, Risa Indriani, Paul Selleck, Abdul R M Adjid, Tatty Syafriati, Jagoda Ignjatovic
Software Mentions: 4
Published: over 7 years ago

10.1111/1365-2435.13354

Immune state is associated with natural dietary variation in wild miceMus musculus domesticus
Cited by: 11
Author(s): Christopher H. Taylor, Stuart Young, Jonathan Fenn, Angela L. Lamb, Ann Lowe, Benoit Poulin, Andrew D. C. MacColl, Janette E. Bradley
Software Mentions: 4
Published: over 7 years ago

10.1111/1365-2435.13028

Habitat heterogeneity induces rapid changes in the feeding behaviour of generalist arthropod predators
Cited by: 42
Author(s): Karin Staudacher, Oskar Rennstam Rubbmark, Klaus Birkhofer, Gerard Malsher, Daniela Sint, Mattias Jonsson, Michael Traugott
Software Mentions: 4
Published: over 8 years ago

10.1534/g3.116.026914

Environmental Association Analyses Identify Candidates for Abiotic Stress Tolerance inGlycine soja, the Wild Progenitor of Cultivated Soybeans
Cited by: 39
Author(s): Justin Anderson, Thomas J. Y. Kono, Robert M. Stupar, Michael B. Kantar, Peter L. Morrell
Software Mentions: 4
Published: over 10 years ago

10.3390/genes8100273

The History of Tree and Shrub Taxa on Bol'shoy Lyakhovsky Island (New Siberian Archipelago) since the Last Interglacial Uncovered by Sedimentary Ancient DNA and Pollen Data
Cited by: 35
Author(s): Heike Zimmermann, Elena Raschke, Laura S. Epp, Kathleen R. Stoof‐Leichsenring, Lutz Schirrmeister, Georg Schwamborn, Ulrike Herzschuh
Software Mentions: 4
Published: almost 9 years ago

10.3390/genes10030233

The Patchy Distribution of Restriction–Modification System Genes and the Conservation of Orphan Methyltransferases in Halobacteria
Cited by: 26
Author(s): Matthew S. Fullmer, Matthew Ouellette, Artemis S. Louyakis, R. Thane Papke, J. Peter Gogarten
Software Mentions: 4
Published: over 7 years ago

10.3390/genes10100823

Dissecting the Genome-Wide Evolution and Function of R2R3-MYB Transcription Factor Family in Rosa chinensis
Cited by: 13
Author(s): Yu Han, Jiayao Yu, Tao Zhao, Tangren Cheng, Jia Wang, Weiru Yang, Huitang Pan, Qixiang Zhang
Software Mentions: 4
Published: almost 7 years ago

10.1186/s13059-020-02007-1

Influenza infection elicits an expansion of gut population of endogenous Bifidobacterium animalis which protects mice against infection
Cited by: 62
Author(s): Qiang Zhang, Jin Hu, Jia-Wu Feng, Xiaoru Hu, Wang Ting, Wenxiao Gong, Kun Huang, Yi-Xiong Guo, Zhong Zou, Xian Lin, Run Zhou, Yuqi Yuan, Anding Zhang, Hong Wei, Gang Cao, Chen Liu, Lingling Chen, Meilin Jin
Software Mentions: 4
Published: over 6 years ago

10.1093/gbe/evz178

Phylogenomics Reveals Clear Cases of Misclassification and Genus-Wide Phylogenetic Markers for Acinetobacter
Cited by: 50
Author(s): Valeria Mateo-Estrada, Lucía Graña-Miraglia, Gamaliel López-Leal, Santiago Castillo-Ramírez
Software Mentions: 4
Published: about 7 years ago

10.1186/s13073-021-00856-4

Trans-ethnic gut microbiota signatures of type 2 diabetes in Denmark and India
Cited by: 29
Author(s): Camila Alvarez-Silva, Alireza Kashani, Torben Hansen, Nishal Kumar Pinna, Ranjit Mohan Anjana, Anirban Dutta, Shruti Saxena, Julie Støy, Ulla Kampmann, Trine Nielsen, Torben Jørgensen, Visvanathan Gnanaprakash, Rameshkumar Gnanavadivel, Sukumaran Aswath, Coimbatore Subramanian Shanthi Rani, Kristine Færch, Venkatesan Radha, Muthuswamy Balasubramanyam, G. Balakrish Nair, Bhabatosh Das, Henrik Vestergaard, Torben Hansen, Sharmila S. Mande, Viswanathan Mohan, Manimozhiyan Arumugam, Oluf Pedersen
Software Mentions: 4
Published: over 5 years ago

10.1093/gigascience/gix058

Connections between the human gut microbiome and gestational diabetes mellitus
Cited by: 178
Author(s): Yashu Kuang, Jinhua Lu, Shenghui Li, Junhua Li, Mingyang Yuan, Jianxing He, Niannian Chen, Wan-Qing Xiao, Shi‐Li Shen, Lan Qiu, Yongming Wu, Cui-Yue Hu, Yanyan Wu, Weidong Li, Qiaozhu Chen, Hong‐Wen Deng, Christopher J. Papasian, Huimin Xia, Xiu Qiu
Software Mentions: 4
Published: about 9 years ago

10.1093/gigascience/gix107

HOMINID: a framework for identifying associations between host genetic variation and microbiome composition
Cited by: 8
Author(s): Joshua Lynch, Karen Tang, Sambhawa Priya, Joanna Sands, Margaret Sands, Evan Tang, Sayan Mukherjee, Dan Knights, Ran Blekhman
Software Mentions: 4
Published: almost 9 years ago

10.1111/gcb.15091

Disentangling the effects of plant species invasion and urban development on arthropod community composition
Cited by: 14
Author(s): Wendy Jesse, Jasper Molleman, Oscar Franken, Mark Lammers, Matty P. Berg, Jocelyn E. Behm, Matthew R. Helmus, Jacintha Ellers
Software Mentions: 4
Published: over 6 years ago

10.1111/gcb.14495

Extreme drought pushes stream invertebrate communities over functional thresholds
Cited by: 65
Author(s): Thomas W. H. Aspin, Kieran Khamis, Thomas J. Matthews, Alexander M. Milner, Matthew J. O’Callaghan, Mark Trimmer, Guy Woodward, Mark E. Ledger
Software Mentions: 4
Published: almost 8 years ago

10.1111/gcb.15439

Nitrogen cycling microbiomes are structured by plant mycorrhizal associations with consequences for nitrogen oxide fluxes in forests
Cited by: 38
Author(s): Ryan M. Mushinski, Zachary Payne, Jonathan D. Raff, Matthew E. Craig, S. E. Pusede, Douglas B. Rusch, Jeffrey R. White, Richard P. Phillips
Software Mentions: 4
Published: almost 6 years ago

10.1080/19490976.2021.1875797

Early life environmental exposures have a minor impact on the gut ecosystem following a natural birth
Cited by: 6
Author(s): Nishat Tasnim, Candice Quin, S K Gill, Chunping Dai, Miranda M. Hart, Deanna L. Gibson
Software Mentions: 4
Published: over 5 years ago

10.1080/19490976.2021.1897209

The high prevalence of Clostridioides difficile among nursing home elders associates with a dysbiotic microbiome
Cited by: 6
Author(s): John P. Haran, Doyle V. Ward, Shakti Bhattarai, Ethan Loew, Protiva Dutta, Amanda Higgins, Beth A. McCormick, Vanni Bucci
Software Mentions: 4
Published: over 5 years ago

10.1080/19490976.2021.1936378

Effect of COVID-19 precautions on the gut microbiota and nosocomial infections
Cited by: 9
Author(s): Armin Rashidi, Maryam Ebadi, Tauseef Ur Rehman, Heba Elhusseini, Harika Nalluri, Thomas Kaiser, Shernan G. Holtan, Alexander Khoruts, Daniel J. Weisdorf, Christopher Staley
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-017-10560-2

The molecular basis of differential morphology and bleaching thresholds in two morphs of the coral Pocillopora acuta
Cited by: 13
Author(s): Hillary A. Smith, Hannah E. Epstein, Gergely Torda
Software Mentions: 4
Published: about 9 years ago

10.1038/s41598-017-12265-y

Nutrient quality of vertebrate dung as a diet for dung beetles
Cited by: 46
Author(s): Kevin Frank, Adrian Brückner, Andrea Hilpert, Michael Heethoff, Nico Blüthgen
Software Mentions: 4
Published: almost 9 years ago

10.1038/s41598-017-14978-6

Usefulness and limitations of sample pooling for environmental DNA metabarcoding of freshwater fish communities
Cited by: 72
Author(s): Hirotoshi Sato, Yuki Sogo, Hideyuki Doi, Hiroki Yamanaka
Software Mentions: 4
Published: almost 9 years ago

10.1038/s41598-017-16007-y

Warming, shading and a moth outbreak reduce tundra carbon sink strength dramatically by changing plant cover and soil microbial activity
Cited by: 31
Author(s): Mathilde Borg Dahl, Anders Priemé, Asker Brejnrod, Peter Brusvang, Magnus Lund, Josephine Nymand, Magnus Kramshøj, H. Ro‐Poulsen, Merian Skouw Haugwitz
Software Mentions: 4
Published: almost 9 years ago

10.1038/s41598-017-16352-y

First-trimester vaginal microbiome diversity: A potential indicator of preterm delivery risk
Cited by: 48
Author(s): Mohammed Monzoorul Haque, Mitali Merchant, Pinna Nishal Kumar, Anirban Dutta, Sharmila S. Mande
Software Mentions: 4
Published: almost 9 years ago

10.1038/s41598-017-17975-x

Functional redundancy and sensitivity of fish assemblages in European rivers, lakes and estuarine ecosystems
Cited by: 31
Author(s): Nils Teichert, Mario Lepage, Alban Sagouis, Ángel Borja, Guillem Chust, Maria Teresa Ferreira, Stéphanie Pasquaud, Rafaela Schinegger, Pedro Segurado, Christine Argillier
Software Mentions: 4
Published: almost 9 years ago

10.1038/s41598-018-20347-8

Characterization of soil bacterial, archaeal and fungal communities inhabiting archaeological human-impacted layers at Monte Iato settlement (Sicily, Italy)
Cited by: 20
Author(s): J.A. Siles, Birgit Öhlinger, Tomáš Cajthaml, Erich Kistler, Rosa Margesin
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-018-22380-z

Spatio-temporal dynamics of soil bacterial communities as a function of Amazon forest phenology
Cited by: 34
Author(s): Erika Buscardo, József Geml, Steven K. Schmidt, Helena Freitas, Hillândia Brandão da Cunha, László Nagy
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-018-24040-8

Soil pH and plant diversity shape soil bacterial community structure in the active layer across the latitudinal gradients in continuous permafrost region of Northeastern China
Cited by: 80
Author(s): Baihui Ren, Yuanman Hu, Baodong Chen, Ying Zhang, Jan Thiele, Ronghua Shi, Miao Liu, Rencang Bu
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-018-24280-8

Impact of sequencing depth on the characterization of the microbiome and resistome
Cited by: 137
Author(s): Rahat Zaheer, Noelle Noyes, Rodrigo Ortega Polo, Shaun R. Cook, Eric Marinier, Gary Van Domselaar, K. E. Belk, Paul S. Morley, Tim A. McAllister
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-020-74751-0

HLA-A alleles including HLA-A29 affect the composition of the gut microbiome: a potential clue to the pathogenesis of birdshot retinochoroidopathy
Cited by: 12
Author(s): Peter R. Sternes, Tammy M. Martin, Michael Paley, Sarah Diamond, Mark Asquith, Matthew A. Brown, James T. Rosenbaum
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-75225-z

Sequential laxative-probiotic usage for treatment of irritable bowel syndrome: a novel method inspired by mathematical modelling of the microbiome
Cited by: 3
Author(s): Ming Li, Ri Xu, Yanqing Li
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-76645-7

Trait convergence and trait divergence in lake phytoplankton reflect community assembly rules
Cited by: 12
Author(s): Gábor Borics, Viktória B‐Béres, István Bácsi, Balázs András Lukács, Enikő T‐Krasznai, Zoltán Botta‐Dukát, Gábor Várbíró
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-78165-w

Diel-scale temporal dynamics in the abundance and composition of pollinators in the Arctic summer
Cited by: 10
Author(s): Leana Zoller, Joanne M. Bennett, Tiffany M. Knight
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-78090-y

Linear infrastructure habitats increase landscape-scale diversity of plants but not of flower-visiting insects
Cited by: 9
Author(s): Juliana Dániel‐Ferreira, Riccardo Bommarco, Jörgen Wissman, Erik Öckinger
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-78525-6

Under the karst: detecting hidden subterranean assemblages using eDNA metabarcoding in the caves of Christmas Island, Australia
Cited by: 11
Author(s): Katrina West, Zoe T. Richards, Euan S. Harvey, Robert Susac, Alicia Grealy, Michael Bunce
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-78773-6

Evaluation of methods for the reduction of contaminating host reads when performing shotgun metagenomic sequencing of the milk microbiome
Cited by: 28
Author(s): Min Yap, Conor Feehily, Calum J. Walsh, Mark A. Fenelon, Eileen F. Murphy, Fionnuala M. McAuliffe, Douwe van Sinderen, Paul W. O’Toole, Órla O’Sullivan, Paul D. Cotter
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-79055-x

Simultaneous allergic traits in dogs and their owners are associated with living environment, lifestyle and microbial exposures
Cited by: 13
Author(s): Jenni Lehtimäki, Hanna Sinkko, Anna Hielm‐Björkman, Tiina Laatikainen, Lasse Ruokolainen, Hannes Lohi
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-80444-5

A glimpse of antimicrobial resistance gene diversity in kefir and yoghurt
Cited by: 23
Author(s): Adrienn Tóth, István Csabai, Gergely Maróti, Ákos Jerzsele, Attila Dubecz, Árpád V. Patai, Maura Fiona Judge, Sára Ágnes Nagy, László Makrai, Krisztián Bànyai, G. Szita, Norbert Solymosi
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-80982-6

Antibiotics and the developing intestinal microbiome, metabolome and inflammatory environment in a randomized trial of preterm infants
Cited by: 34
Author(s): Jordan T. Russell, J. Lauren Ruoss, Diomel de la Cruz, Nan Li, Catalina Bazacliu, Laura Patton, Kelley Lobean McKinley, Timothy J. Garrett, Richard A. Polin, Eric W. Triplett, Josef Neu
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-81551-7

The root endophytic bacterial community of Ricinus communis L. resembles the seeds community more than the rhizosphere bacteria independent of soil water content
Cited by: 8
Author(s): Stephanie Hereira-Pacheco, Yendi E. Navarro‐Noya, Luc Dendooven
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-81407-0

Surface slicks are pelagic nurseries for diverse ocean fauna
Cited by: 24
Author(s): Jonathan L. Whitney, Jamison M. Gove, Margaret A. McManus, Katharine A. Smith, Joey Lecky, Philipp Neubauer, Jana E. Phipps, Emily A. Contreras, Donald R. Kobayashi, Gregory P. Asner
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-82362-6

Integrative analysis of DNA, macroscopic remains and stable isotopes of dog coprolites to reconstruct community diet
Cited by: 11
Author(s): Kelsey E. Witt, Karthik Yarlagadda, Julie M. Allen, Alyssa C. Bader, Mary Simon, Seppe Kuehn, Kelly S. Swanson, Tzu Wen L. Cross, Kristin M. Hedman, Stanley H. Ambrose, Ripan S. Malhi
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-82866-1

The protective role of daidzein in intestinal health of turbot (Scophthalmus maximus L.) fed soybean meal-based diets
Cited by: 14
Author(s): Guijuan Yu, Yang Liu, Weihao Ou, Jihong Dai, Qinghui Ai, Wenbing Zhang, Kangsen Mai, Yan-Jiao Zhang
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-82569-7

Physiological and molecular responses of lobe coral indicate nearshore adaptations to anthropogenic stressors
Cited by: 16
Author(s): Kaho H. Tisthammer, Emma Timmins‐Schiffman, François O. Seneca, Brook L. Nunn, Robert H. Richmond
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-83153-9

Insufficient sampling constrains our characterization of plant microbiomes
Cited by: 11
Author(s): Lorinda Bullington, Ylva Lekberg, Beau Larkin
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-83417-4

Soil mite communities (Acari: Mesostigmata) as indicators of urban ecosystems in Bucharest, Romania
Cited by: 9
Author(s): Minodora Manu, Raluca Ioana Băncilă, Constantin-Ciprian Bîrsan, Owen Mountford, Marilena Onete
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-84532-y

18S rRNA gene sequences of leptocephalus gut contents, particulate organic matter, and biological oceanographic conditions in the western North Pacific
Cited by: 4
Author(s): Tsuyoshi Watanabe, Satoshi Nagai, Yoko Kawakami, Taiga Asakura, Jun Kikuchi, Nobuharu Inaba, Yukiko Taniuchi, Hiroaki Kurogi, Seinen Chow, Tsutomu Tomoda, Daisuke Ambe, Daisuke Hasegawa
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-86148-8

Comparative in silico genome analysis of Clostridium perfringens unravels stable phylogroups with different genome characteristics and pathogenic potential
Cited by: 15
Author(s): Mostafa Y. Abdel-Glil, Prasad Thomas, Jörg Linde, Anne Busch, Lothar H. Wieler, Heinrich Neubauer, Christian Seyboldt
Software Mentions: 4
Published: over 5 years ago

10.1038/s41396-019-0374-3

Impacts of microbial assemblage and environmental conditions on the distribution of anatoxin-a producing cyanobacteria within a river network
Cited by: 55
Author(s): Keith Bouma‐Gregson, Matthew R. Olm, Alexander J. Probst, Karthik Anantharaman, Mary E. Power, Jillian F. Banfield
Software Mentions: 4
Published: over 7 years ago

10.1084/jem.20201793

A positive feedback loop reinforces the allergic immune response in human peanut allergy
Cited by: 10
Author(s): Xiaoying Zhou, Wei Yu, Shu‐Chen Lyu, Claudia Macaubas, Bryan Bunning, Ziyuan He, Elizabeth Mellins, Kari Nadeau
Software Mentions: 4
Published: over 5 years ago

10.3390/jof1020185

Ectomycorrhizal Fungal Communities and Enzymatic Activities Vary across an Ecotone between a Forest and Field
Cited by: 15
Author(s): Megan A. Rúa, B. Moore, Nicole Marie Hergott, Lily Van, Colin R. Jackson, Jason D. Hoeksema
Software Mentions: 4
Published: about 11 years ago

10.3390/jof7030175

Pineapple Mycobiome Related to Fruitlet Core Rot Occurrence and the Influence of Fungal Species Dispersion Patterns
Cited by: 6
Author(s): Manon Vignassa, Jean-Christophe Meile, Frédéric Chiroleu, Christian Soria, Charlène Leneveu‐Jenvrin, Sabine Schorr‐Galindo, Marc Chillet
Software Mentions: 4
Published: over 5 years ago

10.3390/jof7030194

The Banana Root Endophytome: Differences between Mother Plants and Suckers and Evaluation of Selected Bacteria to Control Fusarium oxysporum f.sp. cubense
Cited by: 23
Author(s): Carmen Gómez-Lama Cabanás, Antonio José Fernández-González, Martina Cardoni, Antonio Valverde-Corredor, Javier López-Cepero Borrego, Manuel Fernández‐López, Jesús Mercado‐Blanco
Software Mentions: 4
Published: over 5 years ago

10.3390/jof7050335

Effect of Isolation Conditions on Diversity of Endolichenic Fungal Communities from a Foliose Lichen, Parmotrema tinctorum
Cited by: 10
Author(s): Ji Ho Yang, Seung‐Yoon Oh, Wonyong Kim, Jung-Jae Woo, Hyeonjae Kim, Jae‐Seoun Hur
Software Mentions: 4
Published: over 5 years ago

10.3390/ijerph16111919

Effects of Small Gaps on the Relationship Among Soil Properties, Topography, and Plant Species in Subtropical Rhododendron Secondary Forest, Southwest China
Cited by: 7
Author(s): Fenghua Tang, Wenxuan Quan, Chaochan Li, Xianfei Huang, Xianliang Wu, Qiaoan Yang, Yannan Pan, Tayan Xu, Chenyu Qian, Yunbing Gu
Software Mentions: 4
Published: over 7 years ago

10.3390/ijerph16203966

Spatial-Temporal Variation of Bacterial Communities in Sediments in Lake Chaohu, a Large, Shallow Eutrophic Lake in China
Cited by: 16
Author(s): Lei Zhang, Yu Cheng, Guang Gao, Jiahu Jiang
Software Mentions: 4
Published: almost 7 years ago

10.3390/ijerph18010030

Crop Diversity at the Landscape Level Affects the Composition and Structure of the Vegetation-Dwelling Arthropod Communities in Naked Oat (Avena Chinensis) Fields
Cited by: 7
Author(s): Huan Zhao, Jiahuan Li, Lizhu Guo, Kun Wang
Software Mentions: 4
Published: over 5 years ago

10.3390/ijerph18073742

Do Rural Second Homes Shape Commensal Microbiota of Urban Dwellers? A Pilot Study among Urban Elderly in Finland
Cited by: 4
Author(s): Mika Saarenpää, Marja I. Roslund, Riikka Puhakka, Mira Grönroos, Nan Hui, Noora Nurminen, Olli H. Laitinen, Heikki Hyöty, Ondřej Cinek, Aki Sinkkonen
Software Mentions: 4
Published: over 5 years ago

10.1093/infdis/jiz318

High-Throughput Sequencing-Based Investigation of Viruses in Human Cancers by Multienrichment Approach
Cited by: 13
Author(s): Sarah Mollerup, Maria E. Asplund, Jens Friis-Nielsen, Kristín Rós Kjartansdóttir, Helena Fridholm, Thomas Arn Hansen, José Alejandro Romero Herrera, Christopher J. Barnes, Randi Holm Jensen, Stine Raith Richter, Ida Broman Nielsen, Carlotta Pietroni, David E. Alquezar‐Planas, Alba Rey‐Iglesia, Pernille V. S. Olsen, Ewa Rajpert De Meyts, Line Groth‐Pedersen, Christian von Buchwald, David Hebbelstrup Jensen, Robert Gniadecki, Estrid Høgdall, Jill Levin Langhoff, Imre Pete, Ildikó Vereczkey, Zsolt Baranyai, Karen Dybkær, Hans Erik Johnsen, Torben Steiniche, Peter Hokland, Jacob Rosenberg, Ulrik Baandrup, Thomas Sicheritz-Pontén, Eske Willerslev, Søren Brunak, Ole Lund, Tobias Mourier, Lasse Vinner, Jose M. G. Izarzugaza, Lars Peter Nielsen, Anders J. Hansen
Software Mentions: 4
Published: about 7 years ago

10.1007/s00442-018-4082-x

Drought neutralises plant–soil feedback of two mesic grassland forbs
Cited by: 55
Author(s): Ellen L. Fry, Giles N. Johnson, Amy L. Hall, William J. Pritchard, James M. Bullock, Richard D. Bardgett
Software Mentions: 4
Published: over 8 years ago

10.1007/s00442-020-04750-5

Environmental conditions alter successional trajectories on an ephemeral resource: a field experiment with beetles in dead wood
Cited by: 5
Author(s): Ole Petter Laksforsmo Vindstad, Tone Birkemoe, Rolf A. Ims, Anne Sverdrup‐Thygeson
Software Mentions: 4
Published: almost 6 years ago

10.1007/s00442-020-04797-4

Plant invasion impacts on fungal community structure and function depend on soil warming and nitrogen enrichment
Cited by: 21
Author(s): Mark Anthony, Kristina A. Stinson, Jessica A. M. Moore, Serita D. Frey
Software Mentions: 4
Published: almost 6 years ago

10.1007/s00442-021-04971-2

Geographic patterns of seed trait variation in an invasive species: how much can close populations differ?
Cited by: 2
Author(s): Erola Fenollosa, Laia Jené, Sergi Munné‐Bosch
Software Mentions: 4
Published: about 5 years ago

10.1093/jisesa/ieab027

Field Borders Provide Winter Refuge for Beneficial Predators and Parasitoids: A Case Study on Organic Farms
Cited by: 7
Author(s): C. Scott Clem, Alexandra N. Harmon‐Threatt
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.60197

Effects of domestication on the gut microbiota parallel those of human industrialization
Cited by: 37
Author(s): Aspen T. Reese, Katia S. Chadaideh, Caroline E. Diggins, Laura D. Schell, Mark Beckel, Peggy Callahan, Roberta Ryan, Melissa Emery Thompson, Rachel N. Carmody
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.47612

Evolutionary pathways to antibiotic resistance are dependent upon environmental structure and bacterial lifestyle
Cited by: 107
Author(s): Alfonso Santos-López, C. W. Marshall, Michelle R. Scribner, Donald R. Snyder, Vaughn S. Cooper
Software Mentions: 4
Published: about 7 years ago

10.7554/eLife.67740

Bacterial–fungal interactions in the neonatal gut influence asthma outcomes later in life
Cited by: 16
Author(s): Rozlyn C.T. Boutin, Charisse Petersen, Sarah E. Woodward, Antonio Serapio-Palacios, Tahereh Bozorgmehr, Rachelle Loo, Alina Chalanuchpong, Mihai Cirstea, Bernard C. Lo, Kelsey E. Huus, Weronika Barcik, Meghan B. Azad, Allan B. Becker, Piush J. Mandhane, Theo J. Moraes, Malcolm R. Sears, Padmaja Subbarao, Kelly M. McNagny, Stuart E. Turvey, B. Brett Finlay
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.54792

Gut Helicobacter presentation by multiple dendritic cell subsets enables context-specific regulatory T cell generation
Cited by: 18
Author(s): Emilie V. Russler-Germain, Jaeu Yi, Shannon Young, Katherine Nutsch, Ho-Lun Wong, Teresa L. Ai, Jiani N. Chai, Vivek Durai, Daniel H. Kaplan, Ronald N. Germain, Kenneth M. Murphy, Chyi-Song Hsieh
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.13195

Resistome diversity in cattle and the environment decreases during beef production
Cited by: 88
Author(s): Noelle Noyes, Xiang Yang, Lyndsey Linke, Roberta J. Magnuson, Adam Dettenwanger, Shaun R. Cook, Ifigenia Geornaras, D. Woerner, Sheryl Gow, Tim A. McAllister, Hua Yang, Jaime Ruiz, Kenneth L. Jones, Christina Boucher, Paul S. Morley, K. E. Belk
Software Mentions: 4
Published: over 10 years ago

10.7554/eLife.36741

Convergence between the microcosms of Southeast Asian and North American pitcher plants
Cited by: 26
Author(s): Leonora S. Bittleston, Charles J. Wolock, Bakhtiar Effendi Yahya, Xin Yue Chan, Kok Gan Chan, Naomi E. Pierce, Anne Pringle
Software Mentions: 4
Published: about 8 years ago

10.7554/eLife.05224

Social networks predict gut microbiome composition in wild baboons
Cited by: 384
Author(s): Jenny Tung, Luis B. Barreiro, Michael B. Burns, Jean Grenier, Joshua Lynch, Laura Grieneisen, Jeanne Altmann, Susan C. Alberts, Ran Blekhman, Elizabeth A. Archie
Software Mentions: 4
Published: over 11 years ago

10.3390/ijms21093318

Epigenetic Patterns and Geographical Parthenogenesis in the Alpine Plant Species Ranunculus kuepferi (Ranunculaceae)
Cited by: 7
Author(s): Christoph C. F. Schinkel, Eleni Syngelaki, Bernhard Kirchheimer, Stefan Dullinger, Simone Klatt, Elvira Hörandl
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2016.00679

Diversity of Pico- to Mesoplankton along the 2000 km Salinity Gradient of the Baltic Sea
Cited by: 84
Author(s): Yue Hu, Bengt Karlson, Sophie Charvet, Anders F. Andersson
Software Mentions: 3
Published: over 10 years ago

10.7717/peerj.8571

Gynodioecy in the common spindle tree (Euonymus europaeusL.) involves differences in the asymmetry of corolla shapes between sexually differentiated flowers
Cited by: 3
Author(s): Jiří Neustupa
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-018-26375-8

Fertilization shapes a well-organized community of bacterial decomposers for accelerated paddy straw degradation
Cited by: 42
Author(s): Yushan Zhan, Wenjing Liu, Yuanyuan Bao, Jianwei Zhang, Evangelos Petropoulos, Zhongpei Li, Xiangui Lin, Youzhi Feng
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0245146

Powerline right-of-way management and flower-visiting insects: How vegetation management can promote pollinator diversity
Cited by: 5
Author(s): Laura Russo, Hannah Stout, Dana Roberts, Bradley D. Ross, Carolyn G. Mahan
Software Mentions: 3
Published: over 5 years ago

10.1002/ece3.8064

Disentangling complex genomic signals to understand population structure of an exploited, estuarine‐dependent flatfish
Cited by: 2
Author(s): Shannon J. O’Leary, Christopher M. Hollenbeck, Robert R. Vega, David S. Portnoy
Software Mentions: 3
Published: about 5 years ago

10.12952/journal.elementa.000064

Urban microbial ecology of a freshwater estuary of Lake Michigan
Cited by: 40
Author(s): James S. Fisher, Ryan J. Newton, Deborah K. Dila, Sandra L. McLellan
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0177103

Genetic and chemical diversity of Uncaria tomentosa (Willd. ex. Schult.) DC. in the Brazilian Amazon
Cited by: 11
Author(s): Isabela Cristina Gomes Honório, Bianca Waléria Bertoni, Mariana Pires de Campos Telles, Ramilla dos Santos Braga, Suzelei de Castro França, Juliana da Silva Coppede, Valéria S. C. Correa, José Alexandre Felizola Diniz Filho, Ana Maria Soares Pereira
Software Mentions: 3
Published: over 9 years ago

10.7717/peerj.10131

Chemical patterns of colony membership and mother-offspring similarity in Antarctic fur seals are reproducible
Cited by: 0
Author(s): Jonas Tebbe, Emily Humble, Martin Stoffel, Lisa Johanna Tewes, Caroline Müller, Jaume Forcada, Barbara A. Caspers, Joseph I. Hoffman
Software Mentions: 3
Published: almost 6 years ago

10.3390/ijms19113351

Age- and Genotype-Specific Effects of the Angiotensin-Converting Enzyme Inhibitor Lisinopril on Mitochondrial and Metabolic Parameters in Drosophila melanogaster
Cited by: 14
Author(s): Karis A. Ederer, Kelly Jin, Sarah Bouslog, Lu Wang, Gregory S. Gorman, Glenn C. Rowe, Peter M. Abadir, Daniel Raftery, Douglas R. Moellering, Daniel Promislow, Patricia Jumbo-Lucioni, María De Luca
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pone.0147058

Human-Induced Landscape Changes Homogenize Atlantic Forest Bird Assemblages through Nested Species Loss
Cited by: 19
Author(s): Marcelo Alejandro Villegas Vallejos, André Andrian Padial, Jean Ricardo Simões Vitule
Software Mentions: 3
Published: over 10 years ago

10.3389/fmicb.2020.00616

Soil Microbes Trade-Off Biogeochemical Cycling for Stress Tolerance Traits in Response to Year-Round Climate Change
Cited by: 34
Author(s): Maria O. Garcia, Pamela H. Templer, P. Sørensen, Rebecca Sanders‐DeMott, Peter M. Groffman, Jennifer M. Bhatnagar
Software Mentions: 3
Published: over 6 years ago

10.1007/s00442-021-04925-8

Spatial scaling of plant and bird diversity from 50 to 10,000 ha in a lowland tropical rainforest
Cited by: 1
Author(s): Richard J. Hazell, Kryštof Chmel, Jan Riegert, Luda Paul, Brus Isua, Graham Kaina, Pavel Fibich, Kenneth Molem, Alan J. A. Stewart, Mika Peck, George D. Weiblen, Vojtêch Novotný
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2018.01359

Comparative Metagenomics Provides Insight Into the Ecosystem Functioning of the Shark Bay Stromatolites, Western Australia
Cited by: 30
Author(s): Joany Babilonia, Ana Conesa, Giorgio Casaburi, Cécile Pereira, Artemis S. Louyakis, R. Pamela Reid, Jamie S. Foster
Software Mentions: 3
Published: about 8 years ago

10.3389/fmicb.2019.01661

Structural Variations of Bacterial Community Driven by Sphagnum Microhabitat Differentiation in a Subalpine Peatland
Cited by: 22
Author(s): Wen Tian, Hongmei Wang, Xiang Xiao, Ruicheng Wang, Ying Xu
Software Mentions: 3
Published: about 7 years ago

10.7717/peerj.5269

Climate-induced phenological shift of apple trees has diverse effects on pollinators, herbivores and natural enemies
Cited by: 8
Author(s): Ádám Kőrösi, Viktor Markó, Anikó Kovács‐Hostyánszki, László Somay, Ákos Varga, Zoltán Elek, Virginie Boreux, Alexandra‐Maria Klein, Rita Földesi, András Báldi
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pone.0095551

Effects of Local Tree Diversity on Herbivore Communities Diminish with Increasing Forest Fragmentation on the Landscape Scale
Cited by: 8
Author(s): Franziska Peter, Dana G. Berens, Nina Farwig
Software Mentions: 3
Published: over 12 years ago

10.7717/peerj.3687

Sediment microbial taxonomic and functional diversity in a natural salinity gradient challenge Remane’s “species minimum” concept
Cited by: 31
Author(s): Christina Pavloudi, Jon Bent Kristoffersen, Anastasis Oulas, Marleen De Troch, Christos Arvanitidis
Software Mentions: 3
Published: almost 9 years ago

10.3389/fmicb.2017.00975

A Small Number of Low-abundance Bacteria Dominate Plant Species-specific Responses during Rhizosphere Colonization
Cited by: 73
Author(s): Wayne Dawson, Jens Hör, Markus Egert, Mark van Kleunen, Michael Pester
Software Mentions: 3
Published: over 9 years ago

10.3390/ijerph16214221

Field Research on Mixing Aeration in a Drinking Water Reservoir: Performance and Microbial Community Structure
Cited by: 10
Author(s): Zizhen Zhou, Tinlin Huang, Wenyu Gong, Yang Li, Yue Liu, Shilei Zhou
Software Mentions: 3
Published: almost 7 years ago

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