cran: vegan | Projects | Ecosyste.ms: Papers

10.1186/s40168-015-0136-z

Protein relative abundance patterns associated with sucrose-induced dysbiosis are conserved across taxonomically diverse oral microcosm biofilm models of dental caries
Cited by: 43
Author(s): Joel D. Rudney, Pratik Jagtap, Cavan Reilly, Ruoqiong Chen, Todd W. Markowski, LeeAnn Higgins, James E. Johnson, Timothy J. Griffin
Software Mentions: 4
Published: almost 11 years ago

10.1186/s40168-018-0472-x

Gestational diabetes is associated with change in the gut microbiota composition in third trimester of pregnancy and postpartum
Cited by: 252
Author(s): Mie Crusell, Tue H. Hansen, Trine Nielsen, Kristine H. Allin, Malte Rühlemann, Peter Damm, Henrik Vestergaard, Christina Rørbye, Niklas Rye Jørgensen, Ole Bjarne Christiansen, Femke-Anouska Heinsen, André Franke, Jeannet Lauenborg, Oluf Pedersen
Software Mentions: 4
Published: over 8 years ago

10.1186/s40168-020-00997-5

Rhizosphere community selection reveals bacteria associated with reduced root disease
Cited by: 96
Author(s): Chuntao Yin, Juan M. Casa Vargas, Daniel Schlatter, Christina H. Hagerty, Scot H. Hulbert, T. C. Paulitz
Software Mentions: 4
Published: over 5 years ago

10.1186/s40168-017-0344-9

Bottled aqua incognita: microbiota assembly and dissolved organic matter diversity in natural mineral waters
Cited by: 23
Author(s): Céline Lesaulnier, Craig W. Herbold, Claus Pelikan, David Berry, Cédric Gérard, Xavier Le Coz, Sophie Gagnot, Jutta Niggemann, Thorsten Dittmar, Gabriel Singer, Alexander Loy
Software Mentions: 4
Published: almost 9 years ago

10.1186/s40168-020-00940-8

Perinatal environment shapes microbiota colonization and infant growth: impact on host response and intestinal function
Cited by: 43
Author(s): Marta Selma‐Royo, Marta Calatayud, Izaskun García-Mantrana, Anna Parra-Llorca, Ramón Escuriet, Cecilia Martínez‐Costa, María Carmen Collado
Software Mentions: 4
Published: almost 6 years ago

10.1186/s40168-019-0776-5

Coral microbiome composition along the northern Red Sea suggests high plasticity of bacterial and specificity of endosymbiotic dinoflagellate communities
Cited by: 55
Author(s): Eslam O. Osman, David J. Suggett, Christian R. Voolstra, D. Tye Pettay, Dave R. Clark, Claudia Pogoreutz, Eugenia M. Sampayo, Mark E. Warner, David J. Smith
Software Mentions: 4
Published: over 6 years ago

10.1186/s40168-017-0370-7

The Inuit gut microbiome is dynamic over time and shaped by traditional foods
Cited by: 43
Author(s): Geneviève Dubois, Catherine Girard, François‐Joseph Lapointe, B. Jesse Shapiro
Software Mentions: 4
Published: almost 9 years ago

10.1186/s40168-018-0459-7

A microorganisms’ journey between plant generations
Cited by: 67
Author(s): Nathan Vannier, Cendrine Mony, Anne‐kristel Bittebière, Sophie Michon-Coudouel, Marine Biget, Philippe Vandenkoornhuyse
Software Mentions: 4
Published: over 8 years ago

10.1186/s40168-020-00978-8

Coexistence patterns of soil methanogens are closely tied to methane generation and community assembly in rice paddies
Cited by: 53
Author(s): Dong Liu, Haowei Ni, Shuo Jiao, Yahai Lu, Jizhong Zhou, Bo Sun, Yuting Liang
Software Mentions: 4
Published: over 5 years ago

10.1186/s40168-019-0778-3

Warming-induced permafrost thaw exacerbates tundra soil carbon decomposition mediated by microbial community
Cited by: 66
Author(s): Jiajie Feng, Cong Wang, Jiesi Lei, Yunfeng Yang, Qingyun Yan, Xuelong Zhou, Xuanyu Tao, Daliang Ning, Mengting Yuan, Yujia Qin, Zhou Shi, Xue Guo, Zhili He, Joy D. Van Nostrand, Liyou Wu, Rosvel G. Bracho-Garillo, C. Ryan Penton, James R. Cole, Konstantinos T. Konstantinidis, Yiqi Luo, Edward A. G. Schuur, James M. Tiedje, Jizhong Zhou
Software Mentions: 4
Published: over 6 years ago

10.1186/s40168-017-0301-7

Environmental drivers of viral community composition in Antarctic soils identified by viromics
Cited by: 87
Author(s): Evelien M. Adriaenssens, Rolf Kramer, Marc W. Van Goethem, Thulani P. Makhalanyane, Ian D. Hogg, Don A. Cowan
Software Mentions: 4
Published: about 9 years ago

10.1186/s40168-019-0695-5

Concurrent measurement of microbiome and allergens in the air of bedrooms of allergy disease patients in the Chicago area
Cited by: 27
Author(s): Miles Richardson, Neil Gottel, Jack A. Gilbert, Julian Gordon, Prasanthi Gandhi, Rachel Reboulet, Jarrad Hampton-Marcell
Software Mentions: 4
Published: over 7 years ago

10.1186/s40168-020-0788-1

Gastric bypass surgery in a rat model alters the community structure and functional composition of the intestinal microbiota independently of weight loss
Cited by: 37
Author(s): Sven-Bastiaan Haange, Nico Jehmlich, Ute Krügel, Constantin A. Hintschich, Dorothee Wehrmann, Mohammed K. Hankir, Florian Seyfried, Jean Froment, Thomas Hübschmann, Susann Müller, Dirk K. Wissenbach, Kang Kang, Christian Buettner, Gianni Panagiotou, Matthias Noll, Ulrike Rolle-Kampczyk, Wiebke Fenske, Martin von Bergen
Software Mentions: 4
Published: over 6 years ago

10.1186/s40168-016-0178-x

Variable responses of human microbiomes to dietary supplementation with resistant starch
Cited by: 257
Author(s): Arvind Venkataraman, Jessica R. Sieber, Alex W. Schmidt, Clive Waldron, Kevin R. Theis, Thomas M. Schmidt
Software Mentions: 4
Published: about 10 years ago

10.1186/s40168-018-0400-0

Effects of predation stress and food ration on perch gut microbiota
Cited by: 47
Author(s): Yinghua Zha, Alexander Eiler, Frank Johansson, Richard Svanbäck
Software Mentions: 4
Published: over 8 years ago

10.1186/s40168-021-01115-9

Gut microbiota from green tea polyphenol-dosed mice improves intestinal epithelial homeostasis and ameliorates experimental colitis
Cited by: 181
Author(s): Zhenhua Wu, Shimeng Huang, Tiantian Li, Na Li, Dandan Han, Bing Zhang, Zhenjiang Xu, Shiyi Zhang, Jiaman Pang, Shilan Wang, Guolong Zhang, Jiangchao Zhao, Junjun Wang
Software Mentions: 4
Published: about 5 years ago

10.1186/s40168-021-01055-4

Whole lung tissue is the preferred sampling method for amplicon-based characterization of murine lung microbiota
Cited by: 18
Author(s): Jennifer M. Baker, Kevin J. Hinkle, Roderick A. McDonald, Christopher Brown, Nicole R. Falkowski, Gary B. Huffnagle, Robert P. Dickson
Software Mentions: 4
Published: over 5 years ago

10.1186/s40168-019-0707-5

Comparison of the microbiomes of two drinking water distribution systems—with and without residual chloramine disinfection
Cited by: 55
Author(s): Michael B. Waak, Raymond M. Hozalski, Cynthia Hallé, Timothy M. LaPara
Software Mentions: 4
Published: over 7 years ago

10.3390/microorganisms9061157

Does the Composition of the Gut Bacteriome Change during the Growth of Tuna?
Cited by: 5
Author(s): Elsa Gadoin, Lucile Durand, Aurélie Guillou, Sandrine Crochemore, Thierry Bouvier, Emmanuelle Roque, Laurent Dagorn, Jean‐Christophe Auguet, Antoinette Adingra, Christelle Desnues, Yvan Bettarel
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms7100475

Low Temperature (15 °C) Reduces Bacterial Diversity and Prolongs the Preservation Time of Volvariella volvacea
Cited by: 6
Author(s): Xiuling Wang, Shunjie Liu, Mingjie Chen, Changxia Yu, Yan Zhao, Haiyan Yang, Zhe Li, Zhengpeng Li
Software Mentions: 4
Published: almost 7 years ago

10.3390/microorganisms9091842

The Rhizobial Microbiome from the Tropical Savannah Zones in Northern Côte d’Ivoire
Cited by: 5
Author(s): Sara Laetitia Elphège Gnangui, Romain Kouakou Fossou, Anicet Ebou, Chiguié Estelle Raïssa Amon, Dominique Koua, Claude Ghislaine Kouadjo, Don A. Cowan, Adolphe Zézé
Software Mentions: 4
Published: about 5 years ago

10.3390/microorganisms8091377

Microbial Communities in Soils and Endosphere of Solanum tuberosum L. and their Response to Long-Term Fertilization
Cited by: 13
Author(s): Martina Kracmarova, Jana Karpíšková, Ondřej Uhlík, Michal Strejcek, Jiřina Száková, J. Balík, Kateřina Demnerova, Hana Stiborová
Software Mentions: 4
Published: about 6 years ago

10.3390/microorganisms9020294

Potential Association between Vaginal Microbiota and Cervical Carcinogenesis in Korean Women: A Cohort Study
Cited by: 23
Author(s): Gi-Ung Kang, Da-Ryung Jung, Yoon Hee Lee, Se Young Jeon, Hyung Soo Han, Gun Oh Chong, Jae‐Ho Shin
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms9091818

Sulfidogenic Microbial Communities of the Uzen High-Temperature Oil Field in Kazakhstan
Cited by: 10
Author(s): Д. Ш. Соколова, Е. М. Семенова, Denis S. Grouzdev, Salimat K. Bidzhieva, Т. Л. Бабич, Н. Г. Лойко, A. P. Ershov, Vitaly V. Kadnikov, Alexey V. Beletsky, Andrey V. Mardanov, Nurlan S. Zhaparov, Т. Н. Назина
Software Mentions: 4
Published: about 5 years ago

10.3390/microorganisms9091876

The Terrestrial Plastisphere: Diversity and Polymer-Colonizing Potential of Plastic-Associated Microbial Communities in Soil
Cited by: 21
Author(s): Joana MacLean, Sathish Mayanna, Liane G. Benning, Fabian Horn, Alexander Bartholomäus, Yosri Wiesner, Dirk Wagner, Susanne Liebner
Software Mentions: 4
Published: about 5 years ago

10.3390/microorganisms7030072

Urbanization Altered Bacterial and Archaeal Composition in Tidal Freshwater Wetlands Near Washington DC, USA, and Buenos Aires, Argentina
Cited by: 3
Author(s): Martina Gonzalez Mateu, Cedric Evan Park, Cullen Patrick McAskill, Andrew H. Baldwin, Stephanie A. Yarwood
Software Mentions: 4
Published: over 7 years ago

10.3390/microorganisms8020190

Keystone Species and Modularity in Microbial Hydrocarbon Degradation Uncovered by Network Analysis and Association Rule Mining
Cited by: 5
Author(s): Florian Centler, Sarah Günnigmann, Ingo Fetzer, Annelie Wendeberg
Software Mentions: 4
Published: over 6 years ago

10.3390/microorganisms9081595

Habitats Are More Important Than Seasons in Shaping Soil Bacterial Communities on the Qinghai-Tibetan Plateau
Cited by: 7
Author(s): Rui Wang, Wei Miao, Jing Wang, Yongjun Lin
Software Mentions: 4
Published: about 5 years ago

10.3390/microorganisms9030476

Grazing Affects Bacterial and Fungal Diversities and Communities in the Rhizosphere and Endosphere Compartments of Leymus chinensis through Regulating Nutrient and Ion Distribution
Cited by: 14
Author(s): Yurong Yang, Siying Chen, Xuefeng Wu, Sajid Iqbal Syed, Irfan Ullah Shah Syed, Beitong Huang, Pingting Guan, Deli Wang
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms7110502

The Human Milk Microbiota is Modulated by Maternal Diet
Cited by: 54
Author(s): Marina Padilha, Niels Banhos Danneskiold‐Samsøe, Asker Brejnrod, Christian Hoffmann, Vanessa Pereira Cabral, Julia de Melo Iaucci, Cristiane Hermes Sales, Regina Mara Fisberg, Ramon V. Cortez, Susanne Brix, Carla Romano Taddei, Karsten Kristiansen, Susana Marta Isay Saad
Software Mentions: 4
Published: almost 7 years ago

10.3390/microorganisms8010008

Tissue- and Population-Level Microbiome Analysis of the Wasp Spider Argiope bruennichi Identified a Novel Dominant Bacterial Symbiont
Cited by: 22
Author(s): Monica M. Sheffer, Gabriele Uhl, Stefan Prost, Tillmann Lueders, Tim Urich, Mia M. Bengtsson
Software Mentions: 4
Published: over 6 years ago

10.3390/microorganisms9040816

CaptureSeq: Hybridization-Based Enrichment of cpn60 Gene Fragments Reveals the Community Structures of Synthetic and Natural Microbial Ecosystems
Cited by: 8
Author(s): Matthew G. Links, Tim J. Dumonceaux, Erin McCarthy, Sean M. Hemmingsen, Edward Topp, Jennifer Town
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms7090341

DNA- and RNA- Derived Fungal Communities in Subsurface Aquifers Only Partly Overlap but React Similarly to Environmental Factors
Cited by: 14
Author(s): Ali Nawaz, Witoon Purahong, Martina Herrmann, Kirsten Küsel, François Buscot, Tesfaye Wubet
Software Mentions: 4
Published: about 7 years ago

10.3390/microorganisms8101611

The Microbiota Profile in Inflamed and Non-Inflamed Ileal Pouch–Anal Anastomosis
Cited by: 2
Author(s): Sabrina Just Kousgaard, Thomas Yssing Michaelsen, Hans Linde Nielsen, Karina Frahm Kirk, Mads Albertsen, Ole Thorlacius-Ussing
Software Mentions: 4
Published: almost 6 years ago

10.3390/microorganisms8111729

A Large-Scale Survey of the Bacterial Communities in Lakes of Western Mongolia with Varying Salinity Regimes
Cited by: 7
Author(s): Kshitij Tandon, Bayanmunkh Baatar, Pei‐Wen Chiang, Dashdondog Narangarvuu, Bolormaa Oyuntsetseg, Sen‐Lin Tang
Software Mentions: 4
Published: almost 6 years ago

10.3390/microorganisms7100441

Changes in the Bacterioplankton Community Structure from Southern Gulf of Mexico During a Simulated Crude Oil Spill at Mesocosm Scale
Cited by: 17
Author(s): Sonia S. Valencia-Agami, Daniel Cerqueda‐García, S. Putzeys, María Magdalena Uribe-Flores, Ulises García-Cruz, Daniel Pech, Jorge A. Herrera-Silveira, M. Leopoldina Aguirre-Macedo, José Q. García-Maldonado
Software Mentions: 4
Published: almost 7 years ago

10.3390/microorganisms9010005

Effects of Thermal Stress on the Gut Microbiome of Juvenile Milkfish (Chanos chanos)
Cited by: 24
Author(s): Christiane Hassenrück, Hannes Reinwald, Andreas Kunzmann, Inken Tiedemann, Astrid Gärdes
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms8071061

Limited Response of Indigenous Microbes to Water and Nutrient Pulses in High-Elevation Atacama Soils: Implications for the Cold–Dry Limits of Life on Earth
Cited by: 2
Author(s): Lara Vimercati, Clifton P. Bueno de Mesquita, Steven K. Schmidt
Software Mentions: 4
Published: about 6 years ago

10.3390/microorganisms9030549

Lake Ecosystem Robustness and Resilience Inferred from a Climate-Stressed Protistan Plankton Network
Cited by: 16
Author(s): Dominik Forster, Zhishuai Qu, Gianna Pitsch, Estelle P. Bruni, Barbara Kammerlander, Thomas Pröschold, Bettina Sonntag, Thomas Posch, Thorsten Stoeck
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms9050897

Gut Microbiome of Indonesian Adults Associated with Obesity and Type 2 Diabetes: A Cross-Sectional Study in an Asian City, Yogyakarta
Cited by: 16
Author(s): Phatthanaphong Therdtatha, Yanming Song, Masaru Tanaka, Mariyatun Mariyatun, Maisaroh Almunifah, Nancy Eka Putri Manurung, Siska Indriarsih, Yi Lu, Koji Nagata, Katsuya Fukami, Tetsuo Ikeda, Yuan Kun Lee, Endang Sutriswati Rahayu, Jiro Nakayama
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms9091976

Mussel Mass Mortality and the Microbiome: Evidence for Shifts in the Bacterial Microbiome of a Declining Freshwater Bivalve
Cited by: 15
Author(s): Jordan Richard, Lewis J. Campbell, Eric Leis, Rose E. Agbalog, Chris D. Dunn, Diane L. Waller, Susan Knowles, Joel Putnam, Tony L. Goldberg
Software Mentions: 4
Published: about 5 years ago

10.3390/microorganisms8070987

Analysis of Tick Surface Decontamination Methods
Cited by: 13
Author(s): Angeline Hoffmann, Volker Fingerle, Matthias Noll
Software Mentions: 4
Published: about 6 years ago

10.3390/microorganisms7070209

Insights into the Potential of the Atlantic Cod Gut Microbiome as Biomarker of Oil Contamination in the Marine Environment
Cited by: 25
Author(s): Juline M. Walter, Andrea Bagi, Daniela M. Pampanin
Software Mentions: 4
Published: about 7 years ago

10.3390/microorganisms9051069

Study of the Vaginal Microbiota in Healthy Women of Reproductive Age
Cited by: 7
Author(s): Melanie Cristine Alonzo Martínez, Eduardo Cazorla, Esther Cánovas, Juan F. Martínez-Blanch, Empar Chenoll, Eric Climent, Vicente Navarro-López
Software Mentions: 4
Published: over 5 years ago

10.1016/j.vaccine.2016.08.015

Distribution of Bexsero® Antigen Sequence Types (BASTs) in invasive meningococcal disease isolates: Implications for immunisation
Cited by: 62
Author(s): Carina Brehony, Charlene Rodrigues, Raymond Borrow, Andrew Smith, Robert Cunney, E. Richard Moxon, Martin C. J. Maiden
Software Mentions: 4
Published: about 10 years ago

10.1080/01652176.2020.1745317

Effects of hypersensitivity disorders and environmental factors on the equine intestinal microbiota
Cited by: 11
Author(s): Sarah Kaiser‐Thom, Markus Hilty, Vinzenz Gerber
Software Mentions: 4
Published: over 6 years ago

10.1186/s12985-019-1211-z

The altered gut virome community in rhesus monkeys is correlated with the gut bacterial microbiome and associated metabolites
Cited by: 9
Author(s): Heng Li, Hongzhe Li, Jingjing Wang, Lei Guo, Haitao Fan, Huiwen Zheng, Zening Yang, Xing Huang, Manman Chu, Fengmei Yang, Zhanlong He, Nan Li, Jun Yang, Qiongwen Wu, Hongzhe Shi, Longding Liu
Software Mentions: 4
Published: about 7 years ago

10.1080/21505594.2021.1948252

Suppressed inflammation in obese children induced by a high-fiber diet is associated with the attenuation of gut microbial virulence factor genes
Cited by: 5
Author(s): Hui Li, Guojun Wu, Liping Zhao, Menghui Zhang
Software Mentions: 4
Published: about 5 years ago

10.1093/ve/veab034

Metagenomic sequencing reveals a lack of virus exchange between native and invasive freshwater fish across the Murray–Darling Basin, Australia
Cited by: 21
Author(s): Vincenzo A Costa, Jonathon C O Mifsud, Dean M. Gilligan, Jane E. Williamson, Edward C. Holmes, Jemma L. Geoghegan
Software Mentions: 4
Published: over 5 years ago

10.3390/v10120715

Seasonality Drives Microbial Community Structure, Shaping both Eukaryotic and Prokaryotic Host–Viral Relationships in an Arctic Marine Ecosystem
Cited by: 23
Author(s): Ruth‐Anne Sandaa, Julia E. Storesund, Emily Olesin, Maria Lund Paulsen, Aud Larsen, Gunnar Bratbak, Jessica L. Ray
Software Mentions: 4
Published: almost 8 years ago

10.3390/v12090931

Tracking Community Timing: Pattern and Determinants of Seasonality in Culicoides (Diptera: Ceratopogonidae) in Northern Florida
Cited by: 8
Author(s): Agustín Quaglia, Erik M. Blosser, Bethany L. McGregor, Alfred E. Runkel, Kristin E. Sloyer, Dinesh Erram, Samantha M. Wisely, Nathan D. Burkett‐Cadena
Software Mentions: 4
Published: about 6 years ago

10.3390/v12090922

Impact of Viral Lysis on the Composition of Bacterial Communities and Dissolved Organic Matter in Deep-Sea Sediments
Cited by: 14
Author(s): Mara Elena Heinrichs, Dennis Alexander Tebbe, Bernd Wemheuer, Jutta Niggemann, Bert Engelen
Software Mentions: 4
Published: about 6 years ago

10.1016/j.watres.2019.06.075

Spatial ecology of a wastewater network defines the antibiotic resistance genes in downstream receiving waters
Cited by: 93
Author(s): Marcos Quintela-Baluja, Mohamed Abouelnaga, Jesús L. Romalde, Jian‐Qiang Su, Yongjie Yu, Mariano Gomez-Lopez, Barth F. Smets, Yong‐Guan Zhu, David W. Graham
Software Mentions: 4
Published: almost 7 years ago

10.1016/j.wroa.2020.100056

Shared bacterial communities between soil, stored drinking water, and hands in rural Bangladeshi households
Cited by: 5
Author(s): Erica R. Fuhrmeister, Ayşe Ercümen, Jessica A. Grembi, Mahfuza Islam, Amy J. Pickering, Kara L. Nelson
Software Mentions: 4
Published: almost 6 years ago

10.1186/s13071-021-04579-8

Blood meal source and mixed blood-feeding influence gut bacterial community composition in Aedes aegypti
Cited by: 14
Author(s): Ephantus J. Muturi, Teresia Muthoni Njoroge, Christopher A. Dunlap, Carla E. Cáceres
Software Mentions: 4
Published: over 5 years ago

10.1186/s13071-021-04859-3

Blastocystis in the faeces of children from six distant countries: prevalence, quantity, subtypes and the relation to the gut bacteriome
Cited by: 11
Author(s): Ondřej Cinek, Katerina Polackova, Rasha Odeh, Abeer Alassaf, Lenka Kramná, Mary Ann Ugochi Ibekwe, Edna Majaliwa, Gunduz Ahmadov, Bashir Mukhtar Elwasila Elmahi, Hanan Mekki, Sami Oikarinen, Jan Lebl, Mohammed A. Abdullah
Software Mentions: 4
Published: about 5 years ago

10.3390/pathogens9090723

Differences in the Endophytic Microbiome of Olive Cultivars Infected by Xylella fastidiosa across Seasons
Cited by: 35
Author(s): Annalisa Giampetruzzi, Paula Baptista, Massimiliano Morelli, Cristina Cameirão, Teresa Lino-Neto, Daniela Costa, Giusy D’Attoma, Raied Abou Kubaa, Giuseppe Altamura, María Saponari, José Alberto Pereira, P. Saldarelli
Software Mentions: 4
Published: about 6 years ago

10.1038/s41390-021-01419-4

Inflammation in children with cystic fibrosis: contribution of bacterial production of long-chain fatty acids
Cited by: 12
Author(s): Erin Felton, A. Millie Burrell, Hollis Chaney, Iman Sami, Anastassios C. Koumbourlis, Robert J. Freishtat, Keith A. Crandall, Andrea Hahn
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.6931

Metabarcoding reveals a high diversity of woody host-associatedPhytophthoraspp. in soils at public gardens and amenity woodlands in Britain
Cited by: 36
Author(s): Carolyn Riddell, Debbie Frederickson-Matika, April C. Armstrong, Matthew Elliot, Jack Forster, Pete E. Hedley, Jenny Morris, Peter Thorpe, D. E. L. Cooke, Leighton Pritchard, Paul M. Sharp, Sarah Green
Software Mentions: 4
Published: over 7 years ago

10.7717/peerj.11096

Measuring change in biological communities: multivariate analysis approaches for temporal datasets with low sample size
Cited by: 9
Author(s): Hannah L. Buckley, Nicola J. Day, Bradley S. Case, Gavin Lear
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.5293

Variation in the leaf and root microbiome of sugar maple (Acer saccharum) at an elevational range limit
Cited by: 37
Author(s): Jessica G. Wallace, Isabelle Laforest‐Lapointe, Steven W. Kembel
Software Mentions: 4
Published: about 8 years ago

10.7717/peerj.8058

Host dietary specialization and neutral assembly shape gut bacterial communities of wild dragonflies
Cited by: 18
Author(s): Rittik Deb, Ashwin Nair, Deepa Agashe
Software Mentions: 4
Published: almost 7 years ago

10.7717/peerj.9519

Habitat preferences rather than morphological traits affect the recovery process of Collembola (Arthropoda, Hexapoda) on a bare saline–alkaline land
Cited by: 1
Author(s): Ni Zhang, Xiumin Yan, Cheng Liang, Xiaowen Sun, Donghui Wu, Bing Zhang
Software Mentions: 4
Published: about 6 years ago

10.7717/peerj.3667

Changes in zooplankton community, and seston and zooplankton fatty acid profiles at the freshwater/saltwater interface of the Chowan River, North Carolina
Cited by: 8
Author(s): Deborah A. Lichti, Jacques Rinchard, David G. Kimmel
Software Mentions: 4
Published: about 9 years ago

10.7717/peerj.6403

Cover cropping can be a stronger determinant than host crop identity for arbuscular mycorrhizal fungal communities colonizing maize and soybean
Cited by: 28
Author(s): Masao Higo, Yuya Tatewaki, Kento Gunji, Akari Kaseda, Katsunori Isobe
Software Mentions: 4
Published: over 7 years ago

10.7717/peerj.6377

Disentangling the effect of host-genotype and environment on the microbiome of the coral Acropora tenuis
Cited by: 50
Author(s): Bettina Glasl, Caitlin E. Smith, David G. Bourne, Nicole S. Webster
Software Mentions: 4
Published: over 7 years ago

10.7717/peerj.5682

Hemiparasitic plants increase alpine plant richness and evenness but reduce arbuscular mycorrhizal fungal colonization in dominant plant species
Cited by: 18
Author(s): Michael A. McKibben, Jeremiah A. Henning
Software Mentions: 4
Published: almost 8 years ago

10.7717/peerj.4017

5-Fluorouracil and irinotecan (SN-38) have limited impact on colon microbial functionality and composition in vitro.
Cited by: 7
Author(s): Eline Vanlancker, Barbara Vanhoecke, Andrea M. Stringer, Tom Van de Wiele
Software Mentions: 4
Published: over 9 years ago

10.7717/peerj.7552

Oceanographic habitat and the coral microbiomes of urban-impacted reefs
Cited by: 4
Author(s): Stephanie M. Rosales, Christopher D. Sinigalliano, Maribeth L. Gidley, Paul R. Jones, Lewis J. Gramer
Software Mentions: 4
Published: about 7 years ago

10.7717/peerj.9423

Highly diverse root endophyte bacterial community is driven by growth substrate and is plant genotype-independent in common bean (Phaseolus vulgaris L.)
Cited by: 10
Author(s): Aarón Barraza, Juan Carlos Vizuet-de-Rueda, Raúl Álvarez-Venegas
Software Mentions: 4
Published: about 6 years ago

10.7717/peerj.1758

Diuron tolerance and potential degradation by pelagic microbiomes in the Great Barrier Reef lagoon
Cited by: 7
Author(s): Florent E. Angly, Olga Pantos, Thomas C. Morgan, V. I. Rich, Hemerson Tonin, David G. Bourne, Philip Mercurio, Andrew P. Negri, Gene W. Tyson
Software Mentions: 4
Published: over 10 years ago

10.7717/peerj.5333

Historical connections among river basins and climatic changes explain the biogeographic history of a water rat
Cited by: 4
Author(s): Jeronymo Dalapicolla, Yuri Luiz Reis Leite
Software Mentions: 4
Published: about 8 years ago

10.7717/peerj.8042

Chronic trace metals effects of mine tailings on estuarine assemblages revealed by environmental DNA
Cited by: 44
Author(s): Ângelo F. Bernardino, Fabiano Sviatopolk-Mirsky Pais, Louisi Souza de Oliveira, Fabrício Ângelo Gabriel, Tiago Osório Ferreira, Hermano Melo Queiroz, Ana Carolina de Azevedo Mazzuco
Software Mentions: 4
Published: almost 7 years ago

10.7717/peerj.5583

Assessment of the bacterial community structure in shallow and deep sediments of the Perdido Fold Belt region in the Gulf of Mexico
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Author(s): Ma. Fernanda Sánchez-Soto Jiménez, Daniel Cerqueda‐García, Jorge L. Montero-Muñoz, M. Leopoldina Aguirre-Macedo, José Q. García-Maldonado
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pntd.0009062

Exploring the influence of different habitats and their volatile chemistry in modulating sand fly population structure in a leishmaniasis endemic foci, Kenya
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Author(s): Iman B. Hassaballa, Baldwyn Torto, Catherine L. Sole, David P. Tchouassi
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Published: over 5 years ago

10.1371/journal.pntd.0008615

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Author(s): Priscilla Seabourn, Helen Spafford, Nicole M. Yoneishi, Matthew C. I. Medeiros
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10.1371/journal.pone.0256657

Microbiota composition and mucosal immunity in patients with asymptomatic diverticulosis and controls
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Author(s): Tessel Meike van Rossen, Rogier E. Ooijevaar, J. Kuyvenhoven, Anat Eck, Herman Bril, René Buijsman, Marja A. Boermeester, H. B. A. C. Stockmann, Niels de Korte, Andries E. Budding
Software Mentions: 4
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10.1371/journal.pone.0231238

Metabolic versatility of freshwater sedimentary archaea feeding on different organic carbon sources
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Author(s): Sergi Compte-Port, Mireia Fillol, Frédéric Gich, Carles M. Borrego
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Published: over 6 years ago

10.1371/journal.pone.0172829

Small rodents as paratenic or intermediate hosts of carnivore parasites in Berlin, Germany
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Author(s): Jürgen Krücken, Julia Blümke, Denny Maaz, Janina Demeler, Sabrina Ramünke, Daniela Antolová, Roland Schaper, Georg von Samson‐Himmelstjerna
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0239874

Seasonal patterns of ecological uniqueness of anuran metacommunities along different ecoregions in Western Brazil
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Author(s): Karoline Ceron, Diego José Santana, Francisco Valente‐Neto
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0252086

Characterization of oral and cloacal microbial communities in cold-stunned Kemp’s ridley sea turtles (Lepidochelys kempii) during the time course of rehabilitation
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Author(s): Kerry McNally, Charles J. Innis, Adam Kennedy, Jennifer L. Bowen
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0159289

Microbes on a Bottle: Substrate, Season and Geography Influence Community Composition of Microbes Colonizing Marine Plastic Debris
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Author(s): Sonja Oberbeckmann, A. Mark Osborn, Melissa B. Duhaime
Software Mentions: 4
Published: about 10 years ago

10.1371/journal.pone.0180561

Three distinct pneumotypes characterize the microbiome of the lung in BALB/cJ mice
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Author(s): Julia Scheiermann, Dennis M. Klinman
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pone.0225252

I’ve been robbed! – Can changes in floral traits discourage bee pollination?
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Author(s): Camila Vaz de Souza, Maíra Vidor Salvador, Priscila Tunes, Luiz Cláudio Di Stasi, Elza Guimarães
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0165987

Networks Depicting the Fine-Scale Co-Occurrences of Fungi in Soil Horizons
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Software Mentions: 4
Published: almost 10 years ago

10.1371/journal.pone.0250514

Insights into the microbial diversity and structure in a full-scale municipal wastewater treatment plant with particular regard to Archaea
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10.1371/journal.pone.0235868

Cover crop mixture expression is influenced by nitrogen availability and growing degree days
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Author(s): Bàrbara Baraibar, Ebony G. Murrell, Brosi A. Bradley, Mary E. Barbercheck, David A. Mortensen, Jason P. Kaye, Charles M. White
Software Mentions: 4
Published: about 6 years ago

10.1002/ece3.4305

Lake regionalization and diatom metacommunity structuring in tropical South America
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10.1002/ece3.4029

Changes in intestinal microbiota across an altitudinal gradient in the lizard Phrynocephalus vlangalii
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Software Mentions: 4
Published: over 8 years ago

10.1002/ece3.7322

Local environment‐driven adaptive evolution in a marine invasive ascidian (Molgula manhattensis)
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Author(s): Yiyong Chen, Yangchun Gao, Xuena Huang, Shiguo Li, Aibin Zhan
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.4559

Table for five, please: Dietary partitioning in boreal bats
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Author(s): Eero J. Vesterinen, Anna I. E. Puisto, Anna Blomberg, Thomas M. Lilley
Software Mentions: 4
Published: almost 8 years ago

10.1002/ece3.6101

Effects of seed morphology and elaiosome chemical composition on attractiveness of fiveTrilliumspecies to seed‐dispersing ants
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Author(s): Chelsea N. Miller, Susan R. Whitehead, Charles Kwit
Software Mentions: 4
Published: over 6 years ago

10.1002/ece3.4842

Studying the microbiota of bats: Accuracy of direct and indirect samplings
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Author(s): Muriel Dietrich, Wanda Markotter
Software Mentions: 4
Published: over 7 years ago

10.1002/ece3.7842

Characteristics and metabolic patterns of soil methanogenic archaea communities in the high‐latitude natural forested wetlands of China
Cited by: 3
Author(s): Di Wu, Caihong Zhao, Hui Bai, Fude Feng, Xin Sui, Sun Guo-rong
Software Mentions: 4
Published: about 5 years ago

10.1002/ece3.5798

The effects of management on vegetation trajectories during the early‐stage restoration of previously arable land after hay transfer
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Author(s): Myriam Garrouj, Didier Alard, Emmanuel Corcket, Lilian Marchand, Marie‐Lise Benot
Software Mentions: 4
Published: almost 7 years ago

10.1002/ece3.2748

A parasite's modification of host behavior reduces predation on its host
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Author(s): John Soghigian, Linda R. Valsdottir, Todd P. Livdahl
Software Mentions: 4
Published: over 9 years ago

10.1002/ece3.6560

Plant species identity drives soil microbial community structures that persist under a following crop
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Author(s): Aaron Fox, Andreas Lüscher, Franco Widmer
Software Mentions: 4
Published: about 6 years ago

10.1002/ece3.6413

Gut microbiomes of sympatric Amazonian wood‐eating catfishes (Loricariidae) reflect host identity and little role in wood digestion
Cited by: 12
Author(s): Mark McCauley, Donovan P. German, Nathan K. Lujan, Colin R. Jackson
Software Mentions: 4
Published: over 6 years ago

10.1002/ece3.4276

Local trampling disturbance effects on alpine plant populations and communities: Negative implications for climate change vulnerability
Cited by: 14
Author(s): Nathalie Isabelle Chardon, Sonja Wipf, Christian Rixen, Annabarbara Beilstein, Daniel F. Doak
Software Mentions: 4
Published: about 8 years ago

10.1002/ece3.4944

Conservation of genetic diversity hotspots of the high‐valued relic yellowhorn ( Xanthoceras sorbifolium ) considering climate change predictions
Cited by: 1
Author(s): Renbin Zhu, Qing Wang, Wei Guan, Yanjia Mao, Bin Tian, Jimin Cheng, Yousry A. El‐Kassaby
Software Mentions: 4
Published: over 7 years ago

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