cran: vegan | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0231838

Crewmember microbiome may influence microbial composition of ISS habitable surfaces
Cited by: 47
Author(s): Aram Avila-Herrera, James B. Thissen, Camilla Urbaniak, Nicholas A. Be, David J. Smith, Fathi Karouia, Satish K. Mehta, Kasthuri Venkateswaran, Crystal Jaing
Software Mentions: 4
Published: over 6 years ago

10.1186/s12898-016-0106-8

Palaeoenvironmental drivers of vertebrate community composition in the Belly River Group (Campanian) of Alberta, Canada, with implications for dinosaur biogeography
Cited by: 22
Author(s): Thomas M. Cullen, David C. Evans
Software Mentions: 4
Published: almost 10 years ago

10.1371/journal.pone.0212725

Forest fragmentation and impacts of intensive agriculture: Responses from different tree functional groups
Cited by: 5
Author(s): Juliana Cristina Tenius Ribeiro, André Felippe Nunes-Freitas, E. C. C. Fidalgo, Mariella Camardelli Uzêda
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0200179

A precipitation gradient drives change in macroinvertebrate composition and interactions within bromeliads
Cited by: 2
Author(s): Laura Melissa Guzman, Bram Vanschoenwinkel, Vinicius F. Farjalla, A Poon, Diane S. Srivastava
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0222272

Mortality, perception, and scale: Understanding how predation shapes space use in a wild prey population
Cited by: 6
Author(s): Lindsey N. Messinger, Erica F. Stuber, Christopher J. Chizinski, Joseph J. Fontaine
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0199132

Effects of low dose silver nanoparticle treatment on the structure and community composition of bacterial freshwater biofilms
Cited by: 23
Author(s): Alexandra Grün, Constantin Benjamin App, Andreas Breidenbach, Jutta Meier, George Metreveli, Gabriele E. Schaumann, Werner Manz
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0047722

Beyond Streptococcus mutans: Dental Caries Onset Linked to Multiple Species by 16S rRNA Community Analysis
Cited by: 378
Author(s): Erin L. Gross, Clifford J. Beall, Stacey R. Kutsch, Noah D. Firestone, Eugene J. Leys, Ann L. Griffen
Software Mentions: 4
Published: almost 14 years ago

10.1038/s41598-021-92027-z

Changes in gut microbiota in the acute phase after spinal cord injury correlate with severity of the lesion
Cited by: 29
Author(s): Gabriele Bazzocchi, Silvia Turroni, Maria Chiara Bulzamini, Federica D’Amico, Angelica Bava, Massimo Castiglioni, Valentina Cagnetta, Ernesto Losavio, Maurizio Cazzaniga, Laura Terenghi, Luisa De Palma, Giampiero Frasca, Beatrice Aiachini, Sonia Cremascoli, Antonino Massone, Claudia Oggerino, Maria Pia Onesta, Laura Rapisarda, Maria Cristina Pagliacci, Sauro Biscotto, Michele Scarazzato, Tiziana Giovannini, Mimosa Balloni, Marco Candela, Patrizia Brigidi, Carlotte Kiekens
Software Mentions: 4
Published: over 5 years ago

10.1186/s12898-014-0026-4

Dissecting the multi-scale spatial relationship of earthworm assemblages with soil environmental variability
Cited by: 21
Author(s): Juan J. Jiménez, Thibaud Decaëns, Patrick Lavelle, Jean‐Pierre Rossi
Software Mentions: 4
Published: almost 12 years ago

10.1186/s12898-020-00317-3

Endozoochorous dispersal by herbivores and omnivores is mediated by germination conditions
Cited by: 6
Author(s): Soroor Karimi, Mahmoud‐Reza Hemami, Mostafa Tarkesh, Christophe Baltzinger
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-021-90720-7

Benthic estuarine communities' contribution to bioturbation under the experimental effect of marine heatwaves
Cited by: 3
Author(s): Marina Dolbeth, O. Babe, Dimitri Araujo Costa, Ana P. Mucha, P.G. Cardoso, Francisco Arenas
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-89637-y

Impact of diesel and biodiesel contamination on soil microbial community activity and structure
Cited by: 21
Author(s): Eduardo K. Mitter, James J. Germida, J. R. de Freitas
Software Mentions: 4
Published: over 5 years ago

10.1007/s00442-021-04971-2

Geographic patterns of seed trait variation in an invasive species: how much can close populations differ?
Cited by: 2
Author(s): Erola Fenollosa, Laia Jené, Sergi Munné‐Bosch
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-021-90198-3

Association of Candida albicans and Cbp+ Streptococcus mutans with early childhood caries recurrence
Cited by: 25
Author(s): Bruna Albuquerque Garcia, Natalia Acosta, Scott L. Tomar, Luiz Fernando Würdig Roesch, José A. Lemos, Leda Mugayar, Jacqueline Abranches
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-89658-7

Different land-use types equally impoverish but differentially preserve grassland species and functional traits of spider assemblages
Cited by: 6
Author(s): Carolina M. Pinto, Pamela E. Pairo, M. Isabel Bellocq, Julieta Filloy
Software Mentions: 4
Published: over 5 years ago

10.1186/s42523-021-00103-6

Metagenomics analysis revealed the distinctive ruminal microbiome and resistive profiles in dairy buffaloes
Cited by: 10
Author(s): Hui-Zeng Sun, Ke-Lan Peng, Mingyuan Xue, Jianxin Liu
Software Mentions: 4
Published: about 5 years ago

10.1186/s12862-017-0885-3

Grandparental immune priming in the pipefish Syngnathus typhle
Cited by: 39
Author(s): Anne Beemelmanns, Olivia Roth
Software Mentions: 4
Published: over 9 years ago

10.1038/s41598-019-56631-4

Helicobacter pylori infection associates with fecal microbiota composition and diversity
Cited by: 41
Author(s): Fabian Frost, Tim Kacprowski, Malte Rühlemann, Corinna Bang, André Franke, Kathrin Zimmermann, Matthias Nauck, Uwe Völker, Henry Völzke, Reiner Biffar, Christian Schulz, Julia Mayerle, Frank Ulrich Weiss, Georg Homuth, Markus M. Lerch
Software Mentions: 4
Published: over 6 years ago

10.1186/s12862-019-1523-z

Ancient events and climate adaptive capacity shaped distinct chloroplast genetic structure in the oak lineages
Cited by: 12
Author(s): Mengxiao Yan, Ruibin Liu, Ying Liu, Andrew L. Hipp, Min Deng, Yanshi Xiong
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12862-016-0592-5

Age-related association of venom gene expression and diet of predatory gastropods
Cited by: 16
Author(s): Dan Chang, Thomas F. Duda
Software Mentions: 4
Published: over 10 years ago

10.1186/s12862-019-1392-5

Population genomics of rapid evolution in natural populations: polygenic selection in response to power station thermal effluents
Cited by: 59
Author(s): David I. Dayan, Xiao Du, Tara Zeynep Baris, Dominique Wagner, Douglas L. Crawford, Marjorie F. Oleksiak
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-55000-5

Cascading effects of temperature alterations on trophic ecology of European grayling (Thymallus thymallus)
Cited by: 3
Author(s): Szymon Smoliński, Adam Głazaczow
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12864-019-5844-5

Genomic erosion and extensive horizontal gene transfer in gut-associated Acetobacteraceae
Cited by: 28
Author(s): Brown Bp, Jennifer J. Wernegreen
Software Mentions: 4
Published: over 7 years ago

10.1186/s12864-020-07327-x

Gene expression patterns of red sea urchins (Mesocentrotus franciscanus) exposed to different combinations of temperature and pCO2 during early development
Cited by: 5
Author(s): Juliet M. Wong, Gretchen E. Hofmann
Software Mentions: 4
Published: over 5 years ago

10.1186/1471-2164-15-1179

The use of genome wide association methods to investigate pathogenicity, population structure and serovar in Haemophilus parasuis
Cited by: 34
Author(s): Kate J. Howell, Lucy A. Weinert, Roy R. Chaudhuri, Shi-Lu Luan, Sarah Peters, Jukka Corander, David Harris, Øystein Angen, Virginia Aragón, Albert Bensaid, Susanna Williamson, Julian Parkhill, Paul R. Langford, Andrew N. Rycroft, Brendan W. Wren, Matthew T. G. Holden, Alexander W. Tucker, Duncan J. Maskell
Software Mentions: 4
Published: over 12 years ago

10.1186/s12864-017-4392-0

Molecular characterization of larval development from fertilization to metamorphosis in a reef-building coral
Cited by: 36
Author(s): Marie E. Strader, Galina V. Aglyamova, Mikhail V. Matz
Software Mentions: 4
Published: over 8 years ago

10.1186/s13568-017-0491-1

Responses of zinc recovery to temperature and mineral composition during sphalerite bioleaching process
Cited by: 9
Author(s): Yunhua Xiao, Xueduan Liu, Jun Fang, Yili Liang, Xian Zhang, Delong Meng, Huaqun Yin
Software Mentions: 4
Published: almost 9 years ago

10.1186/s42523-020-00051-7

Diet-induced changes in bacterial communities in the jejunum and their associations with bile acids in Angus beef cattle
Cited by: 14
Author(s): Jianan Liu, Fang Liu, Wentao Cai, Caixia Jia, Ying Bai, Yanghua He, Weiyun Zhu, Robert W. Li, Jiuzhou Song
Software Mentions: 4
Published: about 6 years ago

10.1186/s12864-016-3304-z

High-throughput gene-expression quantification of grapevine defense responses in the field using microfluidic dynamic arrays
Cited by: 32
Author(s): Marie‐Cécile Dufour, Noël Magnin, Bernard Dumas, Sophie Vergnes, Marie‐France Corio‐Costet
Software Mentions: 4
Published: almost 10 years ago

10.1186/s12864-020-06783-9

An empirical comparison of population genetic analyses using microsatellite and SNP data for a species of conservation concern
Cited by: 70
Author(s): Shawna J. Zimmerman, Cameron L. Aldridge, Sara J. Oyler‐McCance
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-019-51912-4

Pollinator foraging flexibility mediates rapid plant-pollinator network restoration in semi-natural grasslands
Cited by: 13
Author(s): Norbertas Noreika, Ignasi Bartomeus, Marie Winsa, Riccardo Bommarco, Erik Öckinger
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-019-51245-2

Environmental factors and river network position allow prediction of benthic community assemblies: A model of nematode metacommunities
Cited by: 10
Author(s): Birgit Gansfort, Walter Traunspurger
Software Mentions: 4
Published: almost 7 years ago

10.1186/1471-2164-14-665

Comparison of RNA- or LNA-hybrid oligonucleotides in template-switching reactions for high-speed sequencing library preparation
Cited by: 23
Author(s): Matthias Harbers, Sachi Kato, Michiel de Hoon, Yoshihide Hayashizaki, Piero Carninci, Charles Plessy
Software Mentions: 4
Published: almost 13 years ago

10.1186/s12865-021-00428-6

Transcriptomics of type 2 diabetic and healthy human neutrophils
Cited by: 8
Author(s): Sarah E. Kleinstein, Jamison McCorrison, A. Razzaque Ahmed, Hatice Hastürk, Thomas E. Van Dyke, Marcelo Freire
Software Mentions: 4
Published: over 5 years ago

10.1186/s12879-020-05135-y

The correlations between Th1 and Th2 cytokines in human alveolar echinococcosis
Cited by: 7
Author(s): Xingming Ma, Xuefei Zhang, Jia Liu, Yufang Liu, Cunzhe Zhao, Huixia Cai, Lei Wen, Jun Ma, Haining Fan, Jianye Zhou, Na Liu, Jingxiao Zhang, Yongshun Wang, Wei Wang, Peizhen Zhan, Xiongying Zhang, Qing Zhang, Kemei Shi, Peiyun Liu
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-019-48296-w

Carbon assimilation profiles of mucoralean fungi show their metabolic versatility
Cited by: 17
Author(s): Julia Pawłowska, Alicja Okrasińska, Kamil Kisło, Tamara Aleksandrzak‐Piekarczyk, Katarzyna Szatraj, Somayeh Dolatabadi, Anna Muszewska
Software Mentions: 4
Published: about 7 years ago

10.1007/s00442-020-04797-4

Plant invasion impacts on fungal community structure and function depend on soil warming and nitrogen enrichment
Cited by: 21
Author(s): Mark Anthony, Kristina A. Stinson, Jessica A. M. Moore, Serita D. Frey
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12866-019-1519-2

Assessment of the impact of different fecal storage protocols on the microbiota diversity and composition: a pilot study
Cited by: 16
Author(s): Shirin Moossavi, Phillip A. Engen, Reza Ghanbari, Stefan J. Green, Ankur Naqib, Faraz Bishehsari, Shahin Merat, Hossein Poustchi, Ali Keshavarzian, Reza Malekzadeh
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-019-48166-5

Enrichment of intracellular sulphur cycle –associated bacteria in intertidal benthic foraminifera revealed by 16S and aprA gene analysis
Cited by: 12
Author(s): I. Salonen, Panagiota-Myrsini Chronopoulou, Clare Bird, Gert‐Jan Reichart, Karoliina A. Koho
Software Mentions: 4
Published: about 7 years ago

10.1186/s12866-020-01827-2

Vital members in the gut microbiotas altered by two probiotic Bifidobacterium strains against liver damage in rats
Cited by: 8
Author(s): Hua Zha, Daiqiong Fang, Aimee L. van der Reis, Kevin Chang, Liya Yang, Jiao-Jiao Xie, Ding Shi, Qiaomai Xu, Yating Li
Software Mentions: 4
Published: over 6 years ago

10.7554/eLife.05224

Social networks predict gut microbiome composition in wild baboons
Cited by: 384
Author(s): Jenny Tung, Luis B. Barreiro, Michael B. Burns, Jean Grenier, Joshua Lynch, Laura Grieneisen, Jeanne Altmann, Susan C. Alberts, Ran Blekhman, Elizabeth A. Archie
Software Mentions: 4
Published: over 11 years ago

10.1186/s12866-021-02306-y

Spatio-temporal dynamics of bacterial communities in the shoreline of Laurentian great Lake Erie and Lake St. Clair’s large freshwater ecosystems
Cited by: 2
Author(s): Abdolrazagh Hashemi Shahraki, Subba Rao Chaganti, Daniel D. Heath
Software Mentions: 4
Published: almost 5 years ago

10.1186/s42523-021-00098-0

The microbiota of healthy dogs demonstrates individualized responses to synbiotic supplementation in a randomized controlled trial
Cited by: 6
Author(s): Jirayu Tanprasertsuk, Aashish R. Jha, Justin Shmalberg, Roshonda B. Jones, Lee M. Perry, Heather Maughan, Ryan W. Honaker
Software Mentions: 4
Published: over 5 years ago

10.1186/s12866-018-1333-2

Low recovery of bacterial community after an extreme salinization-desalinization cycle
Cited by: 4
Author(s): Yang Hu, Chengrong Bai, Jian Cai, Kwang‐Tsao Shao, Xiangming Tang, Guang Gao
Software Mentions: 4
Published: almost 8 years ago

10.1186/s42523-021-00076-6

Flexibility and resilience of great tit (Parus major) gut microbiomes to changing diets
Cited by: 23
Author(s): Kasun H. Bodawatta, Inga Freiberga, Kateřina Pužejová, Kateřina Sam, Michael Poulsen, Knud A. Jønsson
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-46353-y

Incense Burning is Associated with Human Oral Microbiota Composition
Cited by: 11
Author(s): Yvonne Vallès, Claire K. Inman, Brandilyn A. Peters, Laila Abdel Wareth, Abdishakur Abdulle, Habiba Alsafar, Fatme Al Anouti, Ayesha Al Dhaheri, Divya Galani, Muna Abdalla Mohamed Haji, Aisha Al Hamiz, Ayesha Al Hosani, Mohammed Al-Houqani, Abdulla AlJunaibi, Marina Kazim, Tomas Kirchhoff, Wael Al Mahmeed, Fatma Al-Maskari, Abdullah Alnaeemi, Naima Oumeziane, Ravichandran Ramasamy, Ann Marie Schmidt, Henri Vallès, Eiman Al Zaabi, Scott E. Sherman, Raghib Ali, Jiyoung Ahn, Richard B. Hayes
Software Mentions: 4
Published: about 7 years ago

10.3934/microbiol.2019.1.62

Stability of temperate coral Astrangia poculata microbiome is reflected across different sequencing methodologies
Cited by: 5
Author(s): Dawn B. Goldsmith, Zoe A. Pratte, Christina A. Kellogg, Sara E. Snader, Koty Sharp
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-46106-x

Peat substrate amended with chitin modulates the N-cycle, siderophore and chitinase responses in the lettuce rhizobiome
Cited by: 32
Author(s): Caroline De Tender, Bart Mesuere, Felix Van der Jeugt, Annelies Haegeman, Tom Ruttink, Bart Vandecasteele, Peter Dawyndt, Jane Debode, Eiko E. Kuramae
Software Mentions: 4
Published: about 7 years ago

10.1007/s00442-020-04750-5

Environmental conditions alter successional trajectories on an ephemeral resource: a field experiment with beetles in dead wood
Cited by: 5
Author(s): Ole Petter Laksforsmo Vindstad, Tone Birkemoe, Rolf A. Ims, Anne Sverdrup‐Thygeson
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12866-021-02159-5

Azithromycin and the microbiota of cystic fibrosis sputum
Cited by: 10
Author(s): Nicole Acosta, Christina S. Thornton, Michael G. Surette, Ranjani Somayaji, Laura Rossi, Harvey Rabin, Michael D. Parkins
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-44492-w

Biological effects 26 years after simulated deep-sea mining
Cited by: 74
Author(s): Erik Simon-Lledó, Brian J. Bett, Veerle A.I. Huvenne, Kevin Köser, Timm Schoening, Jens Greinert, Daniel O. B. Jones
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-43522-x

Community profiling of the intestinal microbial community of juvenile Hammerhead Sharks (Sphyrna lewini) from the Rewa Delta, Fiji
Cited by: 9
Author(s): Natacha M. S. Juste-Poinapen, Yang Lü, Marta Ferreira, J Poinapen, Ciro Rico
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-43325-0

Deep-sea benthic communities in the largest oceanic desert are structured by the presence of polymetallic crust
Cited by: 8
Author(s): Juliette Delavenne, Louise Keszler, Magalie Castelin, Pierre Livet, Philippe Maestrati, Sarah Samadi
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-42911-6

Habitat-dependent composition of bacterial and fungal communities in biological soil crusts from Oman
Cited by: 30
Author(s): Raeid M. M. Abed, Alexandra Tamm, Christiane Hassenrück, Ahmed Al‐Rawahi, Emilio Rodríguez‐Caballero, Sabine Fiedler, Stefanie Maier, Bettina Weber
Software Mentions: 4
Published: over 7 years ago

10.1038/srep45840

Microbial Biogeography and Core Microbiota of the Rat Digestive Tract
Cited by: 105
Author(s): Dongyao Li, Haiqin Chen, Bingyong Mao, Qin Yang, Jianxin Zhao, Zhennan Gu, Hao Zhang, Yong Q. Chen, Wei Chen
Software Mentions: 4
Published: over 9 years ago

10.1007/s00442-018-4082-x

Drought neutralises plant–soil feedback of two mesic grassland forbs
Cited by: 55
Author(s): Ellen L. Fry, Giles N. Johnson, Amy L. Hall, William J. Pritchard, James M. Bullock, Richard D. Bardgett
Software Mentions: 4
Published: over 8 years ago

10.3390/ani10061055

Microbial Communities Associated with Farmed Genypterus chilensis: Detection in Water Prior to Bacterial Outbreaks Using Culturing and High-Throughput Sequencing
Cited by: 5
Author(s): Arturo Levicán, James S. Fisher, Sandra L. McLellan, Rubén Avendaño‐Herrera
Software Mentions: 4
Published: over 6 years ago

10.1186/s12866-020-01990-6

The effects of exopolysaccharides and exopolysaccharide-producing Lactobacillus on the intestinal microbiome of zebrafish (Danio rerio)
Cited by: 17
Author(s): Chenchen Ma, Hongyang Guo, Haibo Chang, Shi Huang, Shuaiming Jiang, Dongxue Huo, Jiachao Zhang, Xiaopeng Zhu
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12866-017-1092-5

Upper and lower respiratory tract microbiota in horses: bacterial communities associated with health and mild asthma (inflammatory airway disease) and effects of dexamethasone
Cited by: 43
Author(s): Stephanie L. Bond, Edouard Timsit, Matthew L. Workentine, Trevor W. Alexander, Renaud Léguillette
Software Mentions: 4
Published: about 9 years ago

10.1186/s12866-021-02230-1

A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidity in elective caesarean born infants
Cited by: 12
Author(s): Christophe Lay, Collins Wenhan Chu, Rikky W. Purbojati, Enzo Acerbi, Daniela I. Drautz–Moses, Paola Flórez de Sessions, Jié Song, Eliza Xin Pei Ho, Yee Jiun Kok, Xinyan Bi, Shuwen Chen, Shi Ya Mak, Mei Chien Chua, Angela Goh, Wen Chin Chiang, Rajeshwar Rao, Surasith Chaithongwongwatthana, Nipon Khemapech, Voranush Chongsrisawat, Rocı́o Martı́n, Yanqing Koh, Sachin R. Lohar, Ivan Chin Hin Tan, Wong Anng Anng, Jie Chen, Nana Bartke, Kaouther Ben-Amor, Ingrid B. Renes, Fiona Wong, Guus Roeselers, Ying Swan Ho, Martin L. Hibberd, Stephan C. Schuster, Jan Knol
Software Mentions: 4
Published: about 5 years ago

10.1038/srep35272

Integrated analysis of bacterial and microeukaryotic communities from differentially active mud volcanoes in the Gulf of Cadiz
Cited by: 21
Author(s): Francisco J. R. C. Coelho, António Louvado, Patrícia M. Domingues, Daniel F. R. Cleary, Marina Ferreira, Adelaide Almeida, Ascensão Ravara, Ângela Cunha, Newton C. M. Gomes
Software Mentions: 4
Published: almost 10 years ago

10.1093/infdis/jiz318

High-Throughput Sequencing-Based Investigation of Viruses in Human Cancers by Multienrichment Approach
Cited by: 13
Author(s): Sarah Mollerup, Maria E. Asplund, Jens Friis-Nielsen, Kristín Rós Kjartansdóttir, Helena Fridholm, Thomas Arn Hansen, José Alejandro Romero Herrera, Christopher J. Barnes, Randi Holm Jensen, Stine Raith Richter, Ida Broman Nielsen, Carlotta Pietroni, David E. Alquezar‐Planas, Alba Rey‐Iglesia, Pernille V. S. Olsen, Ewa Rajpert De Meyts, Line Groth‐Pedersen, Christian von Buchwald, David Hebbelstrup Jensen, Robert Gniadecki, Estrid Høgdall, Jill Levin Langhoff, Imre Pete, Ildikó Vereczkey, Zsolt Baranyai, Karen Dybkær, Hans Erik Johnsen, Torben Steiniche, Peter Hokland, Jacob Rosenberg, Ulrik Baandrup, Thomas Sicheritz-Pontén, Eske Willerslev, Søren Brunak, Ole Lund, Tobias Mourier, Lasse Vinner, Jose M. G. Izarzugaza, Lars Peter Nielsen, Anders J. Hansen
Software Mentions: 4
Published: about 7 years ago

10.1186/s13568-020-01119-y

Dissimilarity of microbial diversity of pond water, shrimp intestine and sediment in Aquamimicry system
Cited by: 23
Author(s): Shenzheng Zeng, Sukontorn Khoruamkid, Warinphorn Kongpakdee, Dongdong Wei, Lingfei Yu, Hao Wang, Zhao‐Peng Deng, Shaoping Weng, Zhijian Huang, Jianguo He, Kriengkrai Satapornvanit
Software Mentions: 4
Published: almost 6 years ago

10.1038/srep33446

Maternal Genetic Ancestry and Legacy of 10th Century AD Hungarians
Cited by: 28
Author(s): Aranka Csősz, Anna Szécsényi-Nagy, Veronika Csákyová, Péter Langó, Viktória Bódis, Kitti Köhler, Gyöngyvér Tömöry, Milan Nagy, Balázs Gusztáv Mende
Software Mentions: 4
Published: about 10 years ago

10.3390/ani11030865

Habitat Elevation Shapes Microbial Community Composition and Alter the Metabolic Functions in Wild Sable (Martes zibellina) Guts
Cited by: 7
Author(s): Lantian Su, Xinxin Liu, Guang-Yao Jin, Yue Ma, Haoxin Tan, Muhammed Abdul Khalid, Martin Romantschuk, Shan Yin, Nan Hui
Software Mentions: 4
Published: over 5 years ago

10.1038/srep28484

Multiple sclerosis patients have a distinct gut microbiota compared to healthy controls
Cited by: 587
Author(s): Jun Chen, Nicholas Chia, Krishna R. Kalari, Jingwen Yao, Martina Novotná, M. Mateo Paz Soldán, David Luckey, Eric Marietta, Patricio Jeraldo, Xianfeng Chen, Brian G. Weinshenker, Moses Rodriguez, Orhun H. Kantarci, Heidi Nelson, Joseph A. Murray, Ashutosh K. Mangalam
Software Mentions: 4
Published: about 10 years ago

10.1186/s12870-014-0276-5

Populus tremula (European aspen) shows no evidence of sexual dimorphism
Cited by: 46
Author(s): Kathryn M. Robinson, Nicolas Delhomme, Niklas Mähler, Bastian Schiffthaler, Jenny Önskog, Benedicte Riber Albrectsen, Pär K. Ingvarsson, Torgeir R. Hvidsten, Stefan Jansson, Nathaniel R. Street
Software Mentions: 4
Published: almost 12 years ago

10.1038/srep26425

The microbiomes and metagenomes of forest biochars
Cited by: 42
Author(s): Genevieve L. Noyce, C. L. Winsborough, Roberta R. Fulthorpe, Nathan Basiliko
Software Mentions: 4
Published: over 10 years ago

10.3390/ijerph18073742

Do Rural Second Homes Shape Commensal Microbiota of Urban Dwellers? A Pilot Study among Urban Elderly in Finland
Cited by: 4
Author(s): Mika Saarenpää, Marja I. Roslund, Riikka Puhakka, Mira Grönroos, Nan Hui, Noora Nurminen, Olli H. Laitinen, Heikki Hyöty, Ondřej Cinek, Aki Sinkkonen
Software Mentions: 4
Published: over 5 years ago

10.1038/srep18061

Probiotic treatment reduces appetite and glucose level in the zebrafish model
Cited by: 80
Author(s): Silvia Falcinelli, Ana Rodiles, Suraj Unniappan, Simona Picchietti, Giorgia Gioacchini, Daniel L. Merrifield, Oliana Carnevali
Software Mentions: 4
Published: over 10 years ago

10.1186/s13568-021-01250-4

Diversity and metagenome analysis of a hydrocarbon-degrading bacterial consortium from asphalt lakes located in Wietze, Germany
Cited by: 17
Author(s): Michael O. Eze, Grant C. Hose, Simon C. George, Rolf Daniel
Software Mentions: 4
Published: over 5 years ago

10.1038/srep18837

Mineral and organic growing media have distinct community structure, stability and functionality in soilless culture systems
Cited by: 49
Author(s): Oliver Grunert, Emma Hernandez-Sanabria, Ramiro Vílchez-Vargas, Ruy Jáuregui, Dietmar H. Pieper, Maaike Perneel, Marie-Christine Van Labeke, Dirk Reheul, Nico Boon
Software Mentions: 4
Published: over 10 years ago

10.1038/srep18371

Physiological response to elevated temperature and pCO2 varies across four Pacific coral species: Understanding the unique host+symbiont response
Cited by: 63
Author(s): Kenneth D. Hoadley, D. Tye Pettay, Andréa G. Grottoli, Wei‐Jun Cai, Todd F. Melman, Verena Schoepf, Xinping Hu, Qian Li, Hui Xu, Yongchen Wang, Yohei Matsui, Justin H. Baumann, Mark E. Warner
Software Mentions: 4
Published: almost 11 years ago

10.1186/1746-6148-9-58

Impact of genetic variation and geographic distribution of porcine reproductive and respiratory syndrome virus on infectivity and pig growth
Cited by: 7
Author(s): Bouabid Badaoui, Roberto Grande, Stefano Calza, María C. Cecere, M. Luini, Alessandra Stella, Sara Botti
Software Mentions: 4
Published: over 13 years ago

10.1080/19490976.2021.1936378

Effect of COVID-19 precautions on the gut microbiota and nosocomial infections
Cited by: 9
Author(s): Armin Rashidi, Maryam Ebadi, Tauseef Ur Rehman, Heba Elhusseini, Harika Nalluri, Thomas Kaiser, Shernan G. Holtan, Alexander Khoruts, Daniel J. Weisdorf, Christopher Staley
Software Mentions: 4
Published: over 5 years ago

10.1186/s12917-018-1691-x

An intensive milk replacer feeding program benefits immune response and intestinal microbiota of lambs during weaning
Cited by: 17
Author(s): Qian Zhang, Chong Li, Xiaolin Niu, Zhian Zhang, Fadi Li, Fēi Li
Software Mentions: 4
Published: almost 8 years ago

10.1080/19490976.2021.1897209

The high prevalence of Clostridioides difficile among nursing home elders associates with a dysbiotic microbiome
Cited by: 6
Author(s): John P. Haran, Doyle V. Ward, Shakti Bhattarai, Ethan Loew, Protiva Dutta, Amanda Higgins, Beth A. McCormick, Vanni Bucci
Software Mentions: 4
Published: over 5 years ago

10.1016/j.baae.2020.09.009

Nutrient status not secondary metabolites drives herbivory and pathogen infestation across differently mycorrhized tree monocultures and mixtures
Cited by: 5
Author(s): Olga Ferlian, Esther-Marie Lintzel, Helge Bruelheide, Carlos A. Guerra, Heike Heklau, Stephanie D. Jurburg, Paul Kühn, Ainhoa Martínez‐Medina, Sybille B. Unsicker, Nico Eisenhauer, Martin Schädler
Software Mentions: 4
Published: about 5 years ago

10.1080/19490976.2021.1875797

Early life environmental exposures have a minor impact on the gut ecosystem following a natural birth
Cited by: 6
Author(s): Nishat Tasnim, Candice Quin, S K Gill, Chunping Dai, Miranda M. Hart, Deanna L. Gibson
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.36741

Convergence between the microcosms of Southeast Asian and North American pitcher plants
Cited by: 26
Author(s): Leonora S. Bittleston, Charles J. Wolock, Bakhtiar Effendi Yahya, Xin Yue Chan, Kok Gan Chan, Naomi E. Pierce, Anne Pringle
Software Mentions: 4
Published: about 8 years ago

10.1111/gcb.15439

Nitrogen cycling microbiomes are structured by plant mycorrhizal associations with consequences for nitrogen oxide fluxes in forests
Cited by: 38
Author(s): Ryan M. Mushinski, Zachary Payne, Jonathan D. Raff, Matthew E. Craig, S. E. Pusede, Douglas B. Rusch, Jeffrey R. White, Richard P. Phillips
Software Mentions: 4
Published: almost 6 years ago

10.1111/gcb.14495

Extreme drought pushes stream invertebrate communities over functional thresholds
Cited by: 65
Author(s): Thomas W. H. Aspin, Kieran Khamis, Thomas J. Matthews, Alexander M. Milner, Matthew J. O’Callaghan, Mark Trimmer, Guy Woodward, Mark E. Ledger
Software Mentions: 4
Published: almost 8 years ago

10.3897/BDJ.5.e13564

Long-term monitoring of diversity and structure of two stands of an Atlantic Tropical Forest
Cited by: 3
Author(s): Écio Souza Diniz, Warley Augusto Caldas Carvalho, Rubens Manoel dos Santos, Markus Gastauer, Paulo Oswaldo Garcia, Marco Aurélio Leite Fontes, Polyanne Aparecida Coelho, Aline Martins Moreira, Gisele Cristina Oliveira Menino, Ary Teixeira de Oliveira‐Filho
Software Mentions: 4
Published: about 9 years ago

10.1111/gcb.15091

Disentangling the effects of plant species invasion and urban development on arthropod community composition
Cited by: 14
Author(s): Wendy Jesse, Jasper Molleman, Oscar Franken, Mark Lammers, Matty P. Berg, Jocelyn E. Behm, Matthew R. Helmus, Jacintha Ellers
Software Mentions: 4
Published: over 6 years ago

10.3390/ani10040676

Transport to the Slaughterhouse Affects the Salmonella Shedding and Modifies the Fecal Microbiota of Finishing Pigs
Cited by: 11
Author(s): Francesca Romana Massacci, Alessandra Morelli, Lucilla Cucco, Adrien Castinel, Roberta Ortenzi, Silvia Tofani, Giovanni Pezzotti, Jordi Estellé, Marta Paniccià, Chiara Francesca Magistrali
Software Mentions: 4
Published: over 6 years ago

10.1186/s13062-020-00287-y

Systematic evaluation of supervised machine learning for sample origin prediction using metagenomic sequencing data
Cited by: 11
Author(s): Chih-Yu Chen, Andrea D. Tyler
Software Mentions: 4
Published: almost 6 years ago

10.1093/gigascience/gix107

HOMINID: a framework for identifying associations between host genetic variation and microbiome composition
Cited by: 8
Author(s): Joshua Lynch, Karen Tang, Sambhawa Priya, Joanna Sands, Margaret Sands, Evan Tang, Sayan Mukherjee, Dan Knights, Ran Blekhman
Software Mentions: 4
Published: almost 9 years ago

10.1093/gigascience/gix058

Connections between the human gut microbiome and gestational diabetes mellitus
Cited by: 178
Author(s): Yashu Kuang, Jinhua Lu, Shenghui Li, Junhua Li, Mingyang Yuan, Jianxing He, Niannian Chen, Wan-Qing Xiao, Shi‐Li Shen, Lan Qiu, Yongming Wu, Cui-Yue Hu, Yanyan Wu, Weidong Li, Qiaozhu Chen, Hong‐Wen Deng, Christopher J. Papasian, Huimin Xia, Xiu Qiu
Software Mentions: 4
Published: about 9 years ago

10.3390/ijerph18010030

Crop Diversity at the Landscape Level Affects the Composition and Structure of the Vegetation-Dwelling Arthropod Communities in Naked Oat (Avena Chinensis) Fields
Cited by: 7
Author(s): Huan Zhao, Jiahuan Li, Lizhu Guo, Kun Wang
Software Mentions: 4
Published: over 5 years ago

10.3390/ani11092497

Human Decision-Making as a Key Factor in the Risk of Wolf–Dog Interactions during Outdoor Activities
Cited by: 3
Author(s): Andżelika Haidt, Radosław Gawryś, Maciej Szewczyk
Software Mentions: 4
Published: about 5 years ago

10.3390/ijerph16203966

Spatial-Temporal Variation of Bacterial Communities in Sediments in Lake Chaohu, a Large, Shallow Eutrophic Lake in China
Cited by: 16
Author(s): Lei Zhang, Yu Cheng, Guang Gao, Jiahu Jiang
Software Mentions: 4
Published: almost 7 years ago

10.1186/s13073-021-00856-4

Trans-ethnic gut microbiota signatures of type 2 diabetes in Denmark and India
Cited by: 29
Author(s): Camila Alvarez-Silva, Alireza Kashani, Torben Hansen, Nishal Kumar Pinna, Ranjit Mohan Anjana, Anirban Dutta, Shruti Saxena, Julie Støy, Ulla Kampmann, Trine Nielsen, Torben Jørgensen, Visvanathan Gnanaprakash, Rameshkumar Gnanavadivel, Sukumaran Aswath, Coimbatore Subramanian Shanthi Rani, Kristine Færch, Venkatesan Radha, Muthuswamy Balasubramanyam, G. Balakrish Nair, Bhabatosh Das, Henrik Vestergaard, Torben Hansen, Sharmila S. Mande, Viswanathan Mohan, Manimozhiyan Arumugam, Oluf Pedersen
Software Mentions: 4
Published: over 5 years ago

10.1155/2020/1242364

Biliary Microbiota and Bile Acid Composition in Cholelithiasis
Cited by: 11
Author(s): В. А. Петров, M.A. Fernández-Peralbo, Rico Derks, Elena M. Knyazeva, Н. В. Мерзликин, А. Э. Сазонов, Oleg A. Mayboroda, Irina V. Saltykova
Software Mentions: 4
Published: about 6 years ago

10.1093/gbe/evz178

Phylogenomics Reveals Clear Cases of Misclassification and Genus-Wide Phylogenetic Markers for Acinetobacter
Cited by: 50
Author(s): Valeria Mateo-Estrada, Lucía Graña-Miraglia, Gamaliel López-Leal, Santiago Castillo-Ramírez
Software Mentions: 4
Published: about 7 years ago

10.1186/s13059-020-02007-1

Influenza infection elicits an expansion of gut population of endogenous Bifidobacterium animalis which protects mice against infection
Cited by: 62
Author(s): Qiang Zhang, Jin Hu, Jia-Wu Feng, Xiaoru Hu, Wang Ting, Wenxiao Gong, Kun Huang, Yi-Xiong Guo, Zhong Zou, Xian Lin, Run Zhou, Yuqi Yuan, Anding Zhang, Hong Wei, Gang Cao, Chen Liu, Lingling Chen, Meilin Jin
Software Mentions: 4
Published: over 6 years ago

10.3390/ijerph16111919

Effects of Small Gaps on the Relationship Among Soil Properties, Topography, and Plant Species in Subtropical Rhododendron Secondary Forest, Southwest China
Cited by: 7
Author(s): Fenghua Tang, Wenxuan Quan, Chaochan Li, Xianfei Huang, Xianliang Wu, Qiaoan Yang, Yannan Pan, Tayan Xu, Chenyu Qian, Yunbing Gu
Software Mentions: 4
Published: over 7 years ago

10.1002/mbo3.1022

Geographical separation and physiology drive differentiation of microbial communities of two discrete populations of the bat Leptonycteris yerbabuenae
Cited by: 10
Author(s): Osiris Gaona, Daniel Cerqueda‐García, Andrés Moya, Ximena Neri‐Barrios, Luisa I. Falcón
Software Mentions: 4
Published: over 6 years ago

10.3390/genes10100823

Dissecting the Genome-Wide Evolution and Function of R2R3-MYB Transcription Factor Family in Rosa chinensis
Cited by: 13
Author(s): Yu Han, Jiayao Yu, Tao Zhao, Tangren Cheng, Jia Wang, Weiru Yang, Huitang Pan, Qixiang Zhang
Software Mentions: 4
Published: almost 7 years ago

10.1002/mbo3.1190

Age‐associated variation in the gut microbiota of chinstrap penguins (Pygoscelis antarctica) reveals differences in food metabolism
Cited by: 4
Author(s): Jing Tian, Jing Du, Shengjiu Zhang, Yanqiu Li, Xiaoyuan Gao, Jingfeng Han, Zengkui Lu
Software Mentions: 4
Published: over 5 years ago

10.3390/ani9121063

Effect of Supplementing Hydrolysable Tannins to a Grower–Finisher Diet Containing Divergent PUFA Levels on Growth Performance, Boar Taint Levels in Back Fat and Intestinal Microbiota of Entire Males
Cited by: 24
Author(s): M. Tretola, Federica Maghin, Paolo Silacci, S. Ampuero, Giuseppe Bee
Software Mentions: 4
Published: almost 7 years ago

Projects: cran: vegan

Enhanced Analysis

Science Score: 100/100

Bonuses:

Penalties:

Papers Mentioning vegan 6,903