cran: vegan | Projects | Ecosyste.ms: Papers

10.1098/rsos.190744

Species-specific effects of passive warming in an Antarctic moss system
Cited by: 14
Author(s): Hannah Prather, Angélica Casanova-Katny, Andrew Clements, Matthew W. Chmielewski, Mehmet Ali Balkan, Erin E. Shortlidge, Todd N. Rosenstiel, Sarah M. Eppley
Software Mentions: 4
Published: almost 7 years ago

10.1098/rsos.191952

Evaluation of host effects on ectomycorrhizal fungal community compositions in a forested landscape in northern Japan
Cited by: 7
Author(s): Shiro Matsuoka, Yasumasa Sugiyama, Ryunosuke Tateno, Shihomi Imamura, Eri Kawaguchi, Takashi Osono
Software Mentions: 4
Published: over 6 years ago

10.1126/sciadv.abf9557

Sedimentary ancient DNA shows terrestrial plant richness continuously increased over the Holocene in northern Fennoscandia
Cited by: 19
Author(s): Dilli Prasad Rijal, Peter D. Heintzman, Youri Lammers, Nigel G. Yoccoz, Kelsey Erin Lorberau, Iva Pitelkova, Tomasz Goslar, Francisco Javier Ancin‐Murguzur, J. Sakari Salonen, Karin F. Helmens, Jostein Bakke, Mary E. Edwards, Torbjørn Alm, Kari Anne Bråthen, Antony G. Brown, Inger Greve Alsos
Software Mentions: 4
Published: about 5 years ago

10.1038/s41597-019-0141-3

Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot
Cited by: 8
Author(s): Antônio Pedro Camargo, Rafael Soares Correa de Souza, Patrícia de Britto Costa, Isabel Rodrigues Gerhardt, Ricardo A. Dante, Grazielle Sales Teodoro, Anna Abrahão, Hans Lambers, Marcelo Falsarella Carazzolle, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishna Palaniappan, Neha Varghese, Supratim Mukherjee, T. B. K. Reddy, Chris Daum, Alex Copeland, I. Min A. Chen, Natalia Ivanova, Nikos C. Kyrpides, Christa Pennacchio, Emiley A. Eloe‐Fadrosh, Paulo Arruda, Rafael S. Oliveira
Software Mentions: 4
Published: about 7 years ago

10.1038/s41597-020-00752-3

Soil bacterial community structures in relation to different oil palm management practices
Cited by: 11
Author(s): Dirk Hölscher, Dominik Schneider, Nina Hennings, Anja Meryandini, Rolf Daniel
Software Mentions: 4
Published: almost 6 years ago

10.1038/srep09396

A phylogenetically informed delineation of floristic regions within a biodiversity hotspot in Yunnan, China
Cited by: 39
Author(s): Rong Li, Nathan J. B. Kraft, Jie Yang, Yuhua Wang
Software Mentions: 4
Published: over 11 years ago

10.1038/s41598-018-27314-3

Sample tracking in microbiome community profiling assays using synthetic 16S rRNA gene spike-in controls
Cited by: 16
Author(s): Dieter M. Tourlousse, Akiko Ohashi, Yuji Sekiguchi
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-018-27493-z

A gene co-expression network model identifies yield-related vicinity networks in Jatropha curcas shoot system
Cited by: 5
Author(s): Nisha Govender, Siju Senan, Zeti‐Azura Mohamed‐Hussein, R Wickneswari V Ratnam
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-018-27650-4

MS analysis of a dilution series of bacteria:phytoplankton to improve detection of low abundance bacterial peptides
Cited by: 4
Author(s): Emma Timmins‐Schiffman, Molly P. Mikan, Ying S. Ting, H. Rodger Harvey, Brook L. Nunn
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-018-27476-0

Host-plant induced changes in microbial community structure and midgut gene expression in an invasive polyphage (Anoplophora glabripennis)
Cited by: 20
Author(s): Erin D. Scully, Scott M. Geib, Charles J. Mason, John E. Carlson, Ming Tien, Han Yi Chen, Chung‐Jui Tsai, Chung‐Jui Tsai, Kelli Hoover
Software Mentions: 4
Published: about 8 years ago

10.1038/s41598-018-28550-3

Analysis of the Gut Microbiome of Rural and Urban Healthy Indians Living in Sea Level and High Altitude Areas
Cited by: 92
Author(s): Bhabatosh Das, Tarini Shankar Ghosh, Saurabh Kedia, Ritika Rampal, Shruti Saxena, Satyabrata Bag, Ridhima Mitra, Mayanka Dayal, Ojasvi Mehta, Adarsh Surendranath, Simon Travis, Prabhanshu Tripathi, G. Balakrish Nair, Vineet Ahuja
Software Mentions: 4
Published: about 8 years ago

10.1038/s41598-018-28939-0

Agulhas Current properties shape microbial community diversity and potential functionality
Cited by: 10
Author(s): Sandra Phoma, Surendra Vikram, Janet Jansson, Isabelle Ansorge, Don A. Cowan, Yves Van de Peer, Thulani P. Makhalanyane
Software Mentions: 4
Published: about 8 years ago

10.1038/s41598-018-29932-3

Poultry and beef meat as potential seedbeds for antimicrobial resistant enterotoxigenic Bacillus species: a materializing epidemiological and potential severe health hazard
Cited by: 24
Author(s): Kamelia M. Osman, Anthony D. Kappell, Ahmed Orabi, Khalid S. Almaary, Ayman Mubarak, Turki M. Dawoud, Hassan A. Hemeg, Ihab M. Moussa, Ashgan M. Hessain, Hend M. Y. Yousef, Krassimira R. Hristova
Software Mentions: 4
Published: about 8 years ago

10.1038/s41598-018-30131-3

A four year survey reveals a coherent pattern between occurrence of fruit bodies and soil amoebae populations for nivicolous myxomycetes
Cited by: 18
Author(s): Mathilde Borg Dahl, Oleg N. Shchepin, Christian Schunk, Annette Menzel, Yu. K. Novozhilov, Martin Schnittler
Software Mentions: 4
Published: about 8 years ago

10.1038/s41598-018-31168-0

Marchantia liverworts as a proxy to plants’ basal microbiomes
Cited by: 41
Author(s): Luis David Alcaraz, Mariana Peimbert, Hugo R. Barajas, Ana Elena Dorantes-Acosta, John L. Bowman, Mario Arteaga-Vázquez
Software Mentions: 4
Published: about 8 years ago

10.1038/s41598-018-32772-w

Multiple processes acting from local to large geographical scales shape bacterial communities associated with Phormidium (cyanobacteria) biofilms in French and New Zealand rivers
Cited by: 13
Author(s): Isidora Echenique‐Subiabre, Anouk Zancarini, Mark W. Heath, Susanna A. Wood, Catherine Quiblier, Jean‐François Humbert
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-018-33162-y

Influence of water quality on diversity and composition of fungal communities in a tropical river
Cited by: 22
Author(s): Mabel Ortiz-Vera, Luiz Ricardo Olchanheski, Eliane Gonçalves da Silva, Felipe Rezende de Lima, Lina Rocío del Pilar Rada Martinez, Maria Inês Zanoli Sato, Rodolfo Jaffé, Ronnie Alves, Simone Ichiwaki, Gabriel Padilla, Welington Luiz Araújo
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-018-33671-w

Disentangling direct and indirect effects of water availability, vegetation, and topography on avian diversity
Cited by: 12
Author(s): Vladimír Remeš, Lenka Harmáčková
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-018-33950-6

Diversity of macaque microbiota compared to the human counterparts
Cited by: 37
Author(s): Zigui Chen, Yun Kit Yeoh, Michael K. Hui, Pak-Kin Wong, Max Kam-Kwan Chan, Margaret Ip, Jun Yu, Robert D. Burk, Francis K.L. Chan, Paul Kay Sheung Chan
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-018-34127-x

Bacterial and fungal gut communities of Agrilus mali at different developmental stages and fed different diets
Cited by: 26
Author(s): Zhengqing Zhang, Shuo Jiao, Xiaohui Li, LI Meng-lou
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-018-34640-z

Reduced diversity of gut microbiota in two Aedes mosquitoes species in areas of recent invasion
Cited by: 30
Author(s): Fausta Rosso, Valentina Tagliapietra, Davide Albanese, Massimo Pindo, Frédéric Baldacchino, Daniele Arnoldi, Claudio Donati, Annapaola Rizzoli
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-018-34453-0

Maternal High-Fat Diet Programs Offspring Liver Steatosis in a Sexually Dimorphic Manner in Association with Changes in Gut Microbial Ecology in Mice
Cited by: 64
Author(s): Umesh D. Wankhade, Ying Zhang, Ping Kang, Maria P. Alfaro, Sree V. Chintapalli, Brian D. Piccolo, Kelly E. Mercer, Aline Andres, Keshari Thakali, Kartik Shankar
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-018-38049-6

Evaluation of Oral Cavity DNA Extraction Methods on Bacterial and Fungal Microbiota
Cited by: 30
Author(s): Jennifer Rosenbaum, Mykhaylo Usyk, Zigui Chen, Christine P. Zolnik, Heidi E. Jones, Levi Waldron, Jennifer Beam Dowd, Lorna E. Thorpe, Robert D. Burk
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-38795-1

Upper mesophotic depths in the coral reefs of Eilat, Red Sea, offer suitable refuge grounds for coral settlement
Cited by: 30
Author(s): Netanel Kramer, Gal Eyal, Raz Tamir, Yossi Loya
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-41542-1

Thickness determines microbial community structure and function in nitrifying biofilms via deterministic assembly
Cited by: 66
Author(s): Carolina Suarez, Maria Piculell, Oskar Modin, Silke Langenheder, Frank Persson, Malte Hermansson
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-41804-y

Assessment of functional and structural changes of soil fungal and oomycete communities in holm oak declined dehesas through metabarcoding analysis
Cited by: 56
Author(s): Francisco J. Ruiz Gómez, Rafael M. Navarro-Cerrillo, Alejandro Pérez‐de‐Luque, W. Oβwald, Andrea Vannini, Carmen Morales‐Rodríguez
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-41287-x

Dry season habitat use of fishes in an Australian tropical river
Cited by: 13
Author(s): Krystle Keller, Quentin Allsop, Jayne Brim Box, Duncan J. Buckle, David A. Crook, Michael M. Douglas, Sue Jackson, Mark J. Kennard, Osmar J. Luiz, Bradley James Pusey, Simon A. Townsend, Alison J. King
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-020-74751-0

HLA-A alleles including HLA-A29 affect the composition of the gut microbiome: a potential clue to the pathogenesis of birdshot retinochoroidopathy
Cited by: 12
Author(s): Peter R. Sternes, Tammy M. Martin, Michael Paley, Sarah Diamond, Mark Asquith, Matthew A. Brown, James T. Rosenbaum
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-75225-z

Sequential laxative-probiotic usage for treatment of irritable bowel syndrome: a novel method inspired by mathematical modelling of the microbiome
Cited by: 3
Author(s): Ming Li, Ri Xu, Yanqing Li
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-76645-7

Trait convergence and trait divergence in lake phytoplankton reflect community assembly rules
Cited by: 12
Author(s): Gábor Borics, Viktória B‐Béres, István Bácsi, Balázs András Lukács, Enikő T‐Krasznai, Zoltán Botta‐Dukát, Gábor Várbíró
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-78165-w

Diel-scale temporal dynamics in the abundance and composition of pollinators in the Arctic summer
Cited by: 10
Author(s): Leana Zoller, Joanne M. Bennett, Tiffany M. Knight
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-78090-y

Linear infrastructure habitats increase landscape-scale diversity of plants but not of flower-visiting insects
Cited by: 9
Author(s): Juliana Dániel‐Ferreira, Riccardo Bommarco, Jörgen Wissman, Erik Öckinger
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-78525-6

Under the karst: detecting hidden subterranean assemblages using eDNA metabarcoding in the caves of Christmas Island, Australia
Cited by: 11
Author(s): Katrina West, Zoe T. Richards, Euan S. Harvey, Robert Susac, Alicia Grealy, Michael Bunce
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-78773-6

Evaluation of methods for the reduction of contaminating host reads when performing shotgun metagenomic sequencing of the milk microbiome
Cited by: 28
Author(s): Min Yap, Conor Feehily, Calum J. Walsh, Mark A. Fenelon, Eileen F. Murphy, Fionnuala M. McAuliffe, Douwe van Sinderen, Paul W. O’Toole, Órla O’Sullivan, Paul D. Cotter
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-79055-x

Simultaneous allergic traits in dogs and their owners are associated with living environment, lifestyle and microbial exposures
Cited by: 13
Author(s): Jenni Lehtimäki, Hanna Sinkko, Anna Hielm‐Björkman, Tiina Laatikainen, Lasse Ruokolainen, Hannes Lohi
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-80444-5

A glimpse of antimicrobial resistance gene diversity in kefir and yoghurt
Cited by: 23
Author(s): Adrienn Tóth, István Csabai, Gergely Maróti, Ákos Jerzsele, Attila Dubecz, Árpád V. Patai, Maura Fiona Judge, Sára Ágnes Nagy, László Makrai, Krisztián Bànyai, G. Szita, Norbert Solymosi
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-80982-6

Antibiotics and the developing intestinal microbiome, metabolome and inflammatory environment in a randomized trial of preterm infants
Cited by: 34
Author(s): Jordan T. Russell, J. Lauren Ruoss, Diomel de la Cruz, Nan Li, Catalina Bazacliu, Laura Patton, Kelley Lobean McKinley, Timothy J. Garrett, Richard A. Polin, Eric W. Triplett, Josef Neu
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-81551-7

The root endophytic bacterial community of Ricinus communis L. resembles the seeds community more than the rhizosphere bacteria independent of soil water content
Cited by: 8
Author(s): Stephanie Hereira-Pacheco, Yendi E. Navarro‐Noya, Luc Dendooven
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-81407-0

Surface slicks are pelagic nurseries for diverse ocean fauna
Cited by: 24
Author(s): Jonathan L. Whitney, Jamison M. Gove, Margaret A. McManus, Katharine A. Smith, Joey Lecky, Philipp Neubauer, Jana E. Phipps, Emily A. Contreras, Donald R. Kobayashi, Gregory P. Asner
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-82362-6

Integrative analysis of DNA, macroscopic remains and stable isotopes of dog coprolites to reconstruct community diet
Cited by: 11
Author(s): Kelsey E. Witt, Karthik Yarlagadda, Julie M. Allen, Alyssa C. Bader, Mary Simon, Seppe Kuehn, Kelly S. Swanson, Tzu Wen L. Cross, Kristin M. Hedman, Stanley H. Ambrose, Ripan S. Malhi
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-82866-1

The protective role of daidzein in intestinal health of turbot (Scophthalmus maximus L.) fed soybean meal-based diets
Cited by: 14
Author(s): Guijuan Yu, Yang Liu, Weihao Ou, Jihong Dai, Qinghui Ai, Wenbing Zhang, Kangsen Mai, Yan-Jiao Zhang
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-82569-7

Physiological and molecular responses of lobe coral indicate nearshore adaptations to anthropogenic stressors
Cited by: 16
Author(s): Kaho H. Tisthammer, Emma Timmins‐Schiffman, François O. Seneca, Brook L. Nunn, Robert H. Richmond
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-83153-9

Insufficient sampling constrains our characterization of plant microbiomes
Cited by: 11
Author(s): Lorinda Bullington, Ylva Lekberg, Beau Larkin
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-83417-4

Soil mite communities (Acari: Mesostigmata) as indicators of urban ecosystems in Bucharest, Romania
Cited by: 9
Author(s): Minodora Manu, Raluca Ioana Băncilă, Constantin-Ciprian Bîrsan, Owen Mountford, Marilena Onete
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-84532-y

18S rRNA gene sequences of leptocephalus gut contents, particulate organic matter, and biological oceanographic conditions in the western North Pacific
Cited by: 4
Author(s): Tsuyoshi Watanabe, Satoshi Nagai, Yoko Kawakami, Taiga Asakura, Jun Kikuchi, Nobuharu Inaba, Yukiko Taniuchi, Hiroaki Kurogi, Seinen Chow, Tsutomu Tomoda, Daisuke Ambe, Daisuke Hasegawa
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-86148-8

Comparative in silico genome analysis of Clostridium perfringens unravels stable phylogroups with different genome characteristics and pathogenic potential
Cited by: 15
Author(s): Mostafa Y. Abdel-Glil, Prasad Thomas, Jörg Linde, Anne Busch, Lothar H. Wieler, Heinrich Neubauer, Christian Seyboldt
Software Mentions: 4
Published: over 5 years ago

10.1038/s41396-019-0374-3

Impacts of microbial assemblage and environmental conditions on the distribution of anatoxin-a producing cyanobacteria within a river network
Cited by: 55
Author(s): Keith Bouma‐Gregson, Matthew R. Olm, Alexander J. Probst, Karthik Anantharaman, Mary E. Power, Jillian F. Banfield
Software Mentions: 4
Published: over 7 years ago

10.1084/jem.20201793

A positive feedback loop reinforces the allergic immune response in human peanut allergy
Cited by: 10
Author(s): Xiaoying Zhou, Wei Yu, Shu‐Chen Lyu, Claudia Macaubas, Bryan Bunning, Ziyuan He, Elizabeth Mellins, Kari Nadeau
Software Mentions: 4
Published: over 5 years ago

10.3390/jof1020185

Ectomycorrhizal Fungal Communities and Enzymatic Activities Vary across an Ecotone between a Forest and Field
Cited by: 15
Author(s): Megan A. Rúa, B. Moore, Nicole Marie Hergott, Lily Van, Colin R. Jackson, Jason D. Hoeksema
Software Mentions: 4
Published: about 11 years ago

10.3390/jof7030175

Pineapple Mycobiome Related to Fruitlet Core Rot Occurrence and the Influence of Fungal Species Dispersion Patterns
Cited by: 6
Author(s): Manon Vignassa, Jean-Christophe Meile, Frédéric Chiroleu, Christian Soria, Charlène Leneveu‐Jenvrin, Sabine Schorr‐Galindo, Marc Chillet
Software Mentions: 4
Published: over 5 years ago

10.3390/jof7030194

The Banana Root Endophytome: Differences between Mother Plants and Suckers and Evaluation of Selected Bacteria to Control Fusarium oxysporum f.sp. cubense
Cited by: 23
Author(s): Carmen Gómez-Lama Cabanás, Antonio José Fernández-González, Martina Cardoni, Antonio Valverde-Corredor, Javier López-Cepero Borrego, Manuel Fernández‐López, Jesús Mercado‐Blanco
Software Mentions: 4
Published: over 5 years ago

10.3390/jof7050335

Effect of Isolation Conditions on Diversity of Endolichenic Fungal Communities from a Foliose Lichen, Parmotrema tinctorum
Cited by: 10
Author(s): Ji Ho Yang, Seung‐Yoon Oh, Wonyong Kim, Jung-Jae Woo, Hyeonjae Kim, Jae‐Seoun Hur
Software Mentions: 4
Published: over 5 years ago

10.3390/ijerph16111919

Effects of Small Gaps on the Relationship Among Soil Properties, Topography, and Plant Species in Subtropical Rhododendron Secondary Forest, Southwest China
Cited by: 7
Author(s): Fenghua Tang, Wenxuan Quan, Chaochan Li, Xianfei Huang, Xianliang Wu, Qiaoan Yang, Yannan Pan, Tayan Xu, Chenyu Qian, Yunbing Gu
Software Mentions: 4
Published: over 7 years ago

10.3390/ijerph16203966

Spatial-Temporal Variation of Bacterial Communities in Sediments in Lake Chaohu, a Large, Shallow Eutrophic Lake in China
Cited by: 16
Author(s): Lei Zhang, Yu Cheng, Guang Gao, Jiahu Jiang
Software Mentions: 4
Published: almost 7 years ago

10.3390/ijerph18010030

Crop Diversity at the Landscape Level Affects the Composition and Structure of the Vegetation-Dwelling Arthropod Communities in Naked Oat (Avena Chinensis) Fields
Cited by: 7
Author(s): Huan Zhao, Jiahuan Li, Lizhu Guo, Kun Wang
Software Mentions: 4
Published: over 5 years ago

10.3390/ijerph18073742

Do Rural Second Homes Shape Commensal Microbiota of Urban Dwellers? A Pilot Study among Urban Elderly in Finland
Cited by: 4
Author(s): Mika Saarenpää, Marja I. Roslund, Riikka Puhakka, Mira Grönroos, Nan Hui, Noora Nurminen, Olli H. Laitinen, Heikki Hyöty, Ondřej Cinek, Aki Sinkkonen
Software Mentions: 4
Published: over 5 years ago

10.1093/infdis/jiz318

High-Throughput Sequencing-Based Investigation of Viruses in Human Cancers by Multienrichment Approach
Cited by: 13
Author(s): Sarah Mollerup, Maria E. Asplund, Jens Friis-Nielsen, Kristín Rós Kjartansdóttir, Helena Fridholm, Thomas Arn Hansen, José Alejandro Romero Herrera, Christopher J. Barnes, Randi Holm Jensen, Stine Raith Richter, Ida Broman Nielsen, Carlotta Pietroni, David E. Alquezar‐Planas, Alba Rey‐Iglesia, Pernille V. S. Olsen, Ewa Rajpert De Meyts, Line Groth‐Pedersen, Christian von Buchwald, David Hebbelstrup Jensen, Robert Gniadecki, Estrid Høgdall, Jill Levin Langhoff, Imre Pete, Ildikó Vereczkey, Zsolt Baranyai, Karen Dybkær, Hans Erik Johnsen, Torben Steiniche, Peter Hokland, Jacob Rosenberg, Ulrik Baandrup, Thomas Sicheritz-Pontén, Eske Willerslev, Søren Brunak, Ole Lund, Tobias Mourier, Lasse Vinner, Jose M. G. Izarzugaza, Lars Peter Nielsen, Anders J. Hansen
Software Mentions: 4
Published: about 7 years ago

10.1007/s00442-018-4082-x

Drought neutralises plant–soil feedback of two mesic grassland forbs
Cited by: 55
Author(s): Ellen L. Fry, Giles N. Johnson, Amy L. Hall, William J. Pritchard, James M. Bullock, Richard D. Bardgett
Software Mentions: 4
Published: over 8 years ago

10.1007/s00442-020-04750-5

Environmental conditions alter successional trajectories on an ephemeral resource: a field experiment with beetles in dead wood
Cited by: 5
Author(s): Ole Petter Laksforsmo Vindstad, Tone Birkemoe, Rolf A. Ims, Anne Sverdrup‐Thygeson
Software Mentions: 4
Published: almost 6 years ago

10.1007/s00442-020-04797-4

Plant invasion impacts on fungal community structure and function depend on soil warming and nitrogen enrichment
Cited by: 21
Author(s): Mark Anthony, Kristina A. Stinson, Jessica A. M. Moore, Serita D. Frey
Software Mentions: 4
Published: almost 6 years ago

10.1007/s00442-021-04971-2

Geographic patterns of seed trait variation in an invasive species: how much can close populations differ?
Cited by: 2
Author(s): Erola Fenollosa, Laia Jené, Sergi Munné‐Bosch
Software Mentions: 4
Published: about 5 years ago

10.1093/jisesa/ieab027

Field Borders Provide Winter Refuge for Beneficial Predators and Parasitoids: A Case Study on Organic Farms
Cited by: 7
Author(s): C. Scott Clem, Alexandra N. Harmon‐Threatt
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.60197

Effects of domestication on the gut microbiota parallel those of human industrialization
Cited by: 37
Author(s): Aspen T. Reese, Katia S. Chadaideh, Caroline E. Diggins, Laura D. Schell, Mark Beckel, Peggy Callahan, Roberta Ryan, Melissa Emery Thompson, Rachel N. Carmody
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.47612

Evolutionary pathways to antibiotic resistance are dependent upon environmental structure and bacterial lifestyle
Cited by: 107
Author(s): Alfonso Santos-López, C. W. Marshall, Michelle R. Scribner, Donald R. Snyder, Vaughn S. Cooper
Software Mentions: 4
Published: about 7 years ago

10.7554/eLife.67740

Bacterial–fungal interactions in the neonatal gut influence asthma outcomes later in life
Cited by: 16
Author(s): Rozlyn C.T. Boutin, Charisse Petersen, Sarah E. Woodward, Antonio Serapio-Palacios, Tahereh Bozorgmehr, Rachelle Loo, Alina Chalanuchpong, Mihai Cirstea, Bernard C. Lo, Kelsey E. Huus, Weronika Barcik, Meghan B. Azad, Allan B. Becker, Piush J. Mandhane, Theo J. Moraes, Malcolm R. Sears, Padmaja Subbarao, Kelly M. McNagny, Stuart E. Turvey, B. Brett Finlay
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.54792

Gut Helicobacter presentation by multiple dendritic cell subsets enables context-specific regulatory T cell generation
Cited by: 18
Author(s): Emilie V. Russler-Germain, Jaeu Yi, Shannon Young, Katherine Nutsch, Ho-Lun Wong, Teresa L. Ai, Jiani N. Chai, Vivek Durai, Daniel H. Kaplan, Ronald N. Germain, Kenneth M. Murphy, Chyi-Song Hsieh
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.13195

Resistome diversity in cattle and the environment decreases during beef production
Cited by: 88
Author(s): Noelle Noyes, Xiang Yang, Lyndsey Linke, Roberta J. Magnuson, Adam Dettenwanger, Shaun R. Cook, Ifigenia Geornaras, D. Woerner, Sheryl Gow, Tim A. McAllister, Hua Yang, Jaime Ruiz, Kenneth L. Jones, Christina Boucher, Paul S. Morley, K. E. Belk
Software Mentions: 4
Published: over 10 years ago

10.7554/eLife.36741

Convergence between the microcosms of Southeast Asian and North American pitcher plants
Cited by: 26
Author(s): Leonora S. Bittleston, Charles J. Wolock, Bakhtiar Effendi Yahya, Xin Yue Chan, Kok Gan Chan, Naomi E. Pierce, Anne Pringle
Software Mentions: 4
Published: about 8 years ago

10.7554/eLife.05224

Social networks predict gut microbiome composition in wild baboons
Cited by: 384
Author(s): Jenny Tung, Luis B. Barreiro, Michael B. Burns, Jean Grenier, Joshua Lynch, Laura Grieneisen, Jeanne Altmann, Susan C. Alberts, Ran Blekhman, Elizabeth A. Archie
Software Mentions: 4
Published: over 11 years ago

10.3389/fmicb.2019.00347

Microbial Community Diversity Within Sediments from Two Geographically Separated Hadal Trenches
Cited by: 49
Author(s): Logan M. Peoples, Eleanna Grammatopoulou, Michelle Pombrol, Xu Xin, Oladayo Osuntokun, Jessica M. Blanton, Eric E. Allen, Clifton C. Nunnally, Jeffrey C. Drazen, Daniel J. Mayor, Douglas H. Bartlett
Software Mentions: 4
Published: over 7 years ago

10.1002/ece3.6351

Dark diversity reveals importance of biotic resources and competition for plant diversity across habitats
Cited by: 10
Author(s): Camilla Fløjgaard, Jose W. Valdez, Lars Dalby, Jesper Erenskjold Moeslund, Kevin Kuhlmann Clausen, Rasmus Ejrnæs, Meelis Pärtel, Ane Kirstine Brunbjerg
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-021-97373-6

Microbial transfers from permanent grassland ecosystems to milk in dairy farms in the Comté cheese area
Cited by: 6
Author(s): Nicolas Chemidlin Prévost-Bouré, Battle Karimi, Sophie Sadet-Bourgeteau, Christophe Djemiel, Moon Brie, Jennifer Dumont, M. Campedelli, Virginie Nowak, Philippe Guyot, C. Letourneur, Vincent Manneville, François Gillet, Yvette Bouton
Software Mentions: 4
Published: about 5 years ago

10.1093/femsec/fix126

Community structure of rare methanogenic archaea: insight from a single functional group
Cited by: 15
Author(s): Shuai Yang, Matthias Winkel, Dirk Wagner, Susanne Liebner
Software Mentions: 4
Published: almost 9 years ago

10.1038/ejhg.2014.1

Using ancestry-informative markers to identify fine structure across 15 populations of European origin
Cited by: 29
Author(s): Laura Huckins, Vesna Boraska, Christopher S. Franklin, James A B Floyd, Lorraine Southam, Gcan, Wtccc, Patrick F. Sullivan, Cynthia M. Bulik, David A. Collier, Chris Tyler‐Smith, Eleftheria Zeggini, Ioanna Tachmazidou
Software Mentions: 4
Published: over 12 years ago

10.1007/s11356-021-13474-9

Are the existing guidelines sufficient for the assessment of bathing water quality? The example of Polish lakes
Cited by: 0
Author(s): Eugeniusz Pronin
Software Mentions: 4
Published: over 5 years ago

10.1093/femsec/fiz128

Biogeographical patterns in soil bacterial communities across the Arctic region
Cited by: 49
Author(s): Lucie Malard, Muhammad Zohaib Anwar, Carsten Suhr Jacobsen, David A. Pearce
Software Mentions: 4
Published: about 7 years ago

10.3389/fonc.2020.526009

Prediction of Postoperative Ileus in Patients With Colorectal Cancer by Preoperative Gut Microbiota
Cited by: 14
Author(s): Ye Jin, Rui Geng, Yang Liu, Lujia Liu, Xiangren Jin, Fuya Zhao, Jing Feng, Yunwei Wei
Software Mentions: 4
Published: almost 6 years ago

10.3390/ijms22073417

Raw Milk-Induced Protection against Food Allergic Symptoms in Mice Is Accompanied by Shifts in Microbial Community Structure
Cited by: 9
Author(s): Suzanne Abbring, Phillip A. Engen, Ankur Naqib, Stefan J. Green, Johan Garssen, Ali Keshavarzian, Betty C.A.M. van Esch
Software Mentions: 4
Published: over 5 years ago

10.1093/femsec/fiaa128

The bacterioplankton community composition and a host genotype dependent occurrence of taxa shape the Daphnia magna gut bacterial community
Cited by: 25
Author(s): Martijn Callens, Luc De Meester, Koenraad Muylaert, Shinjini Mukherjee, Ellen Decaestecker
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-021-97790-7

Glycosaminoglycan biosynthesis pathway in host genome is associated with Helicobacter pylori infection
Cited by: 0
Author(s): Dingxue Hu, Yueqi Lu, Daoming Wang, Chao Nie, Yan Li
Software Mentions: 4
Published: about 5 years ago

10.1016/j.vaccine.2016.08.015

Distribution of Bexsero® Antigen Sequence Types (BASTs) in invasive meningococcal disease isolates: Implications for immunisation
Cited by: 62
Author(s): Carina Brehony, Charlene Rodrigues, Raymond Borrow, Andrew Smith, Robert Cunney, E. Richard Moxon, Martin C. J. Maiden
Software Mentions: 4
Published: about 10 years ago

10.3389/fmicb.2018.02290

Organic Matter Regulates Ammonia-Oxidizing Bacterial and Archaeal Communities in the Surface Sediments of Ctenopharyngodon idellus Aquaculture Ponds
Cited by: 27
Author(s): Lili Dai, Chengqing Liu, Liqin Yu, Song Cheng, Peng Liang, Xiaoli Li, Ling Tao, Li Gu
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0172829

Small rodents as paratenic or intermediate hosts of carnivore parasites in Berlin, Germany
Cited by: 27
Author(s): Jürgen Krücken, Julia Blümke, Denny Maaz, Janina Demeler, Sabrina Ramünke, Daniela Antolová, Roland Schaper, Georg von Samson‐Himmelstjerna
Software Mentions: 4
Published: over 9 years ago

10.3389/fnut.2020.00083

Vitamin B12 Deficiency Alters the Gut Microbiota in a Murine Model of Colitis
Cited by: 37
Author(s): Eberhard Lurz, Rachael Horne, Pekka Määttänen, Richard Wu, Steven R. Botts, Bo Li, Laura Rossi, Kathene C. Johnson‐Henry, Agostino Pierro, Michael G. Surette, Philip M. Sherman
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2018.01188

Canola Root–Associated Microbiomes in the Canadian Prairies
Cited by: 67
Author(s): Chih Ying Lay, Terrence H. Bell, Chantal Hamel, K. Neil Harker, Ramona M. Mohr, Charles W. Greer, Étienne Yergeau, Marc St‐Arnaud
Software Mentions: 4
Published: over 8 years ago

10.1002/ece3.2924

Sustained functional composition of pollinators in restored pastures despite slow functional restoration of plants
Cited by: 18
Author(s): Marie Winsa, Erik Öckinger, Riccardo Bommarco, Regina Lindborg, Stuart P. M. Roberts, Johanna Wärnsberg, Ignasi Bartomeus
Software Mentions: 4
Published: over 9 years ago

10.1038/s41598-019-46353-y

Incense Burning is Associated with Human Oral Microbiota Composition
Cited by: 11
Author(s): Yvonne Vallès, Claire K. Inman, Brandilyn A. Peters, Laila Abdel Wareth, Abdishakur Abdulle, Habiba Alsafar, Fatme Al Anouti, Ayesha Al Dhaheri, Divya Galani, Muna Abdalla Mohamed Haji, Aisha Al Hamiz, Ayesha Al Hosani, Mohammed Al-Houqani, Abdulla AlJunaibi, Marina Kazim, Tomas Kirchhoff, Wael Al Mahmeed, Fatma Al-Maskari, Abdullah Alnaeemi, Naima Oumeziane, Ravichandran Ramasamy, Ann Marie Schmidt, Henri Vallès, Eiman Al Zaabi, Scott E. Sherman, Raghib Ali, Jiyoung Ahn, Richard B. Hayes
Software Mentions: 4
Published: about 7 years ago

10.3390/jcm8091424

Nutritional Therapy Modulates Intestinal Microbiota and Reduces Serum Levels of Total and Free Indoxyl Sulfate and P-Cresyl Sulfate in Chronic Kidney Disease (Medika Study)
Cited by: 73
Author(s): Biagio Raffaele Di Iorio, Maria Teresa Rocchetti, Maria De Angelis, Carmela Cosola, Stefania Marzocco, Lucia Di Micco, Ighli di Bari, Matteo Accetturo, Mirco Vacca, Marco Gobbetti, Mattia Di Iorio, Antonio Bellasi, Loreto Gesualdo
Software Mentions: 4
Published: about 7 years ago

10.1186/s40168-018-0480-x

Tracking antibiotic resistance gene pollution from different sources using machine-learning classification
Cited by: 100
Author(s): Li-Guan Li, Xiaole Yin, Tong Zhang
Software Mentions: 4
Published: over 8 years ago

10.1080/01652176.2020.1745317

Effects of hypersensitivity disorders and environmental factors on the equine intestinal microbiota
Cited by: 11
Author(s): Sarah Kaiser‐Thom, Markus Hilty, Vinzenz Gerber
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0241057

Diversity and structural differences of bacterial microbial communities in rhizocompartments of desert leguminous plants
Cited by: 8
Author(s): Ziyuan Zhou, Minghan Yu, Guodong Ding, Guanglei Gao, Yingying He
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0235932

Limited overall impacts of ectomycorrhizal inoculation on recruitment of boreal trees into Arctic tundra following wildfire belie species-specific responses
Cited by: 4
Author(s): Rebecca E. Hewitt, F. Stuart Chapin, Teresa N. Hollingsworth, Michelle C. Mack, A. V. Rocha, D. Lee Taylor
Software Mentions: 4
Published: about 6 years ago

10.1093/femsec/fiab054

Relative contributions of egg-associated and substrate-associated microorganisms to black soldier fly larval performance and microbiota
Cited by: 12
Author(s): Stijn J. J. Schreven, Hugo de Vries, Gerben D. A. Hermes, Hauke Smidt, Marcel Dicke, J.J.A. van Loon
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-97337-w

DNA metabarcoding reveals the dietary composition in the endangered black-faced spoonbill
Cited by: 3
Author(s): Pei‐Yu Huang, Emily Shui Kei Poon, Anson Tsz Chun Wong, Ivy Wai Yan So, Yik-Hei Sung, Simon Yung Wa Sin
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-021-96942-z

Exploring how microbiome signatures change across inflammatory bowel disease conditions and disease locations
Cited by: 7
Author(s): Gregory C. A. Amos, Chrysi Sergaki, Alastair Logan, Rolland Iriarte, Ayman Bannaga, Subashini Chandrapalan, E. M. H. Wellington, Sjoerd Rijpkema, Ramesh P. Arasaradnam
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-018-20347-8

Characterization of soil bacterial, archaeal and fungal communities inhabiting archaeological human-impacted layers at Monte Iato settlement (Sicily, Italy)
Cited by: 20
Author(s): J.A. Siles, Birgit Öhlinger, Tomáš Cajthaml, Erich Kistler, Rosa Margesin
Software Mentions: 4
Published: over 8 years ago

10.1186/s40168-021-01145-3

Microbial river-to-sea continuum: gradients in benthic and planktonic diversity, osmoregulation and nutrient cycling
Cited by: 19
Author(s): Hwee Sze Tee, David W. Waite, Gavin Lear, Kim M. Handley
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-019-42911-6

Habitat-dependent composition of bacterial and fungal communities in biological soil crusts from Oman
Cited by: 30
Author(s): Raeid M. M. Abed, Alexandra Tamm, Christiane Hassenrück, Ahmed Al‐Rawahi, Emilio Rodríguez‐Caballero, Sabine Fiedler, Stefanie Maier, Bettina Weber
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0130151

Using Plant Functional Traits and Phylogenies to Understand Patterns of Plant Community Assembly in a Seasonal Tropical Forest in Lao PDR
Cited by: 20
Author(s): Manichanh Satdichanh, Jérôme Millet, Andreas Heinimann, Khamseng Nanthavong, Rhett D. Harrison
Software Mentions: 4
Published: about 11 years ago

10.1038/s41396-021-00988-w

Metabolic flexibility allows bacterial habitat generalists to become dominant in a frequently disturbed ecosystem
Cited by: 68
Author(s): Ya Jou Chen, Pok Man Leung, Jennifer L. Wood, Sean K. Bay, Philip Hugenholtz, Adam J. Kessler, Guy Shelley, David W. Waite, Ashley E. Franks, Perran L. M. Cook, Chris Greening
Software Mentions: 4
Published: over 5 years ago

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Papers Mentioning vegan 6,903