cran: vegan | Projects | Ecosyste.ms: Papers

10.1007/s00248-021-01700-3

Soil microbial inoculation during flood events shapes headwater stream microbial communities and diversity
Cited by: 9
Author(s): Florian Caillon, Katharina Besemer, Peter Peduzzi, Jakob Schelker
Software Mentions: 4
Published: over 5 years ago

10.1186/s12866-020-01827-2

Vital members in the gut microbiotas altered by two probiotic Bifidobacterium strains against liver damage in rats
Cited by: 8
Author(s): Hua Zha, Daiqiong Fang, Aimee L. van der Reis, Kevin Chang, Liya Yang, Jiao-Jiao Xie, Ding Shi, Qiaomai Xu, Yating Li
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0126084

Bat-Fruit Interactions Are More Specialized in Shaded-Coffee Plantations than in Tropical Mountain Cloud Forest Fragments
Cited by: 16
Author(s): Jesús R. Hernández‐Montero, Romeo A. Saldaña‐Vázquez, Jorge Galindo‐González, Vinicio J. Sosa
Software Mentions: 4
Published: over 11 years ago

10.1186/s42523-020-00051-7

Diet-induced changes in bacterial communities in the jejunum and their associations with bile acids in Angus beef cattle
Cited by: 14
Author(s): Jianan Liu, Fang Liu, Wentao Cai, Caixia Jia, Ying Bai, Yanghua He, Weiyun Zhu, Robert W. Li, Jiuzhou Song
Software Mentions: 4
Published: about 6 years ago

10.1098/rstb.2019.0732

Oxidative stress and senescence in social insects: a significant but inconsistent link?
Cited by: 23
Author(s): Boris H. Kramer, Volker Nehring, Anja Buttstedt, Jürgen Heınze, Judith Korb, Romain Libbrecht, Karen Meusemann, Robert J. Paxton, Alice Séguret, Florentine Schaub, Abel Bernadou
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0111189

Community Functional Responses to Soil and Climate at Multiple Spatial Scales: When Does Intraspecific Variation Matter?
Cited by: 47
Author(s): Andrew Siefert, Jason D. Fridley, Mark E. Ritchie
Software Mentions: 4
Published: almost 12 years ago

10.1371/journal.pone.0076070

Lineage-Specific Responses of Tooth Shape in Murine Rodents (Murinae, Rodentia) to Late Miocene Dietary Change in the Siwaliks of Pakistan
Cited by: 24
Author(s): Yuri Kimura, Louis L. Jacobs, Lawrence J. Flynn
Software Mentions: 4
Published: almost 13 years ago

10.1128/AEM.01336-19

Surface Water Microbial Community Response to the Biocide 2,2-Dibromo-3-Nitrilopropionamide, Used in Unconventional Oil and Gas Extraction
Cited by: 11
Author(s): Maria Fernanda Campa, Stephen M. Techtmann, Mallory P. Ladd, Jun Yan, Megan Patterson, Amanda Garcia de Matos Amaral, Kimberly E. Carter, Nikea Ulrich, Christopher J. Grant, Robert L. Hettich, Regina Lamendella, Terry C. Hazen
Software Mentions: 4
Published: almost 7 years ago

10.1080/21505594.2021.1948252

Suppressed inflammation in obese children induced by a high-fiber diet is associated with the attenuation of gut microbial virulence factor genes
Cited by: 5
Author(s): Hui Li, Guojun Wu, Liping Zhao, Menghui Zhang
Software Mentions: 4
Published: about 5 years ago

10.1186/s12866-018-1333-2

Low recovery of bacterial community after an extreme salinization-desalinization cycle
Cited by: 4
Author(s): Yang Hu, Chengrong Bai, Jian Cai, Kwang‐Tsao Shao, Xiangming Tang, Guang Gao
Software Mentions: 4
Published: almost 8 years ago

10.3390/metabo10010001

Metatranscriptomic Analysis of the Mouse Gut Microbiome Response to the Persistent Organic Pollutant 2,3,7,8-Tetrachlorodibenzofuran
Cited by: 11
Author(s): Robert G. Nichols, Jingtao Zhang, Jingwei Cai, Iain A. Murray, Imhoi Koo, Philip B. Smith, Gary H. Perdew, Andrew D. Patterson
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12862-019-1392-5

Population genomics of rapid evolution in natural populations: polygenic selection in response to power station thermal effluents
Cited by: 59
Author(s): David I. Dayan, Xiao Du, Tara Zeynep Baris, Dominique Wagner, Douglas L. Crawford, Marjorie F. Oleksiak
Software Mentions: 4
Published: over 7 years ago

10.3390/ani10061055

Microbial Communities Associated with Farmed Genypterus chilensis: Detection in Water Prior to Bacterial Outbreaks Using Culturing and High-Throughput Sequencing
Cited by: 5
Author(s): Arturo Levicán, James S. Fisher, Sandra L. McLellan, Rubén Avendaño‐Herrera
Software Mentions: 4
Published: over 6 years ago

10.1186/s12898-016-0106-8

Palaeoenvironmental drivers of vertebrate community composition in the Belly River Group (Campanian) of Alberta, Canada, with implications for dinosaur biogeography
Cited by: 22
Author(s): Thomas M. Cullen, David C. Evans
Software Mentions: 4
Published: almost 10 years ago

10.1002/ece3.7384

Location, but not defensive genotype, determines ectomycorrhizal community composition in Scots pine ( Pinus sylvestris L.) seedlings
Cited by: 2
Author(s): Jim Downie, Andy F. S. Taylor, Glenn R. Iason, Ben D. Moore, Jonathan Silvertown, Stephen Cavers, Richard A. Ennos
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.7928

Aposematic signaling and seasonal variation in dorsal pelage in a venomous mammal
Cited by: 2
Author(s): K. A. I. Nekaris, Marco Campera, Anna R Watkins, Ariana Weldon, Katherine Hedger, Thaís Q. Morcatty
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0136018

Markedly Divergent Tree Assemblage Responses to Tropical Forest Loss and Fragmentation across a Strong Seasonality Gradient
Cited by: 14
Author(s): Rodrigo Leonel Lozano Orihuela, Carlos A. Peres, Gabriel Mendes, João André Jarenkow, Marcelo Tabarelli
Software Mentions: 4
Published: about 11 years ago

10.1186/s13568-021-01225-5

Manipulating the soil microbiomes during a community recovery process with plant beneficial species for the suppression of Fusarium wilt of watermelon
Cited by: 14
Author(s): Xu Zhang, Cong Xue, D. C. Fang, Xiangming He, Mengyu Wei, Chenjin Zhuo, Junyao Jin, Biao Shen, Rong Li, Ning Ling, Qirong Shen
Software Mentions: 4
Published: over 5 years ago

10.14814/phy2.14012

Fecal transplant modifies urine chemistry risk factors for urinary stone disease
Cited by: 18
Author(s): Joshua M. Stern, Marcia Urban‐Maldonado, Mykhaylo Usyk, Ignacio Granja, Daniel Schoenfeld, Kelvin P. Davies, Ilir Agalliu, John R. Asplin, Robert D. Burk, Sylvia O. Suadicani
Software Mentions: 4
Published: over 7 years ago

10.14814/phy2.14199

Oral vancomycin treatment does not alter markers of postprandial inflammation in lean and obese subjects
Cited by: 10
Author(s): Guido J. Bakker, Johan G. Schnitzler, Siroon Bekkering, Nicolien C. de Clercq, Annefleur M. Koopen, Annick V. Hartstra, Emma C. E. Meessen, Torsten P. M. Scheithauer, Maaike Winkelmeijer, Geesje M. Dallinga‐Thie, Patrice D. Cani, E. Marleen Kemper, Maarten R. Soeters, Jeffrey Kroon, Albert K. Groen, Daniël H. van Raalte, Hilde Herrema, Max Nieuwdorp
Software Mentions: 4
Published: about 7 years ago

10.1186/s13062-020-00287-y

Systematic evaluation of supervised machine learning for sample origin prediction using metagenomic sequencing data
Cited by: 11
Author(s): Chih-Yu Chen, Andrea D. Tyler
Software Mentions: 4
Published: almost 6 years ago

10.1111/1365-2656.12875

Facultative bacterial endosymbionts shape parasitoid food webs in natural host populations: A correlative analysis
Cited by: 20
Author(s): Zhengpei Ye, Ines M. G. Vollhardt, Nadia Parth, Oskar Rennstam Rubbmark, Michael Traugott
Software Mentions: 4
Published: about 8 years ago

10.1002/ece3.2924

Sustained functional composition of pollinators in restored pastures despite slow functional restoration of plants
Cited by: 18
Author(s): Marie Winsa, Erik Öckinger, Riccardo Bommarco, Regina Lindborg, Stuart P. M. Roberts, Johanna Wärnsberg, Ignasi Bartomeus
Software Mentions: 4
Published: over 9 years ago

10.3389/fpls.2019.01697

Shifts in the Active Rhizobiome Paralleling Low Meloidogyne chitwoodi Densities in Fields Under Prolonged Organic Soil Management
Cited by: 19
Author(s): Paula Harkes, Joris J.M. van Steenbrugge, S.J.J. van den Elsen, Afnan Khalil Ahmad Suleiman, J.J. de Haan, M.H.M. Holterman, J. Helder
Software Mentions: 4
Published: over 6 years ago

10.1186/s12898-014-0026-4

Dissecting the multi-scale spatial relationship of earthworm assemblages with soil environmental variability
Cited by: 21
Author(s): Juan J. Jiménez, Thibaud Decaëns, Patrick Lavelle, Jean‐Pierre Rossi
Software Mentions: 4
Published: almost 12 years ago

10.1186/s13568-021-01250-4

Diversity and metagenome analysis of a hydrocarbon-degrading bacterial consortium from asphalt lakes located in Wietze, Germany
Cited by: 17
Author(s): Michael O. Eze, Grant C. Hose, Simon C. George, Rolf Daniel
Software Mentions: 4
Published: over 5 years ago

10.1186/s12917-018-1691-x

An intensive milk replacer feeding program benefits immune response and intestinal microbiota of lambs during weaning
Cited by: 17
Author(s): Qian Zhang, Chong Li, Xiaolin Niu, Zhian Zhang, Fadi Li, Fēi Li
Software Mentions: 4
Published: almost 8 years ago

10.1002/ece3.3504

Elevational diversity gradients of Tibetan loaches: The relative roles of ecological and evolutionary processes
Cited by: 8
Author(s): Chenguang Feng, Yongjie Wu, Fei Tian, Chao Tong, Yongtao Tang, Renyi Zhang, Guogang Li, Kai Zhao
Software Mentions: 4
Published: almost 9 years ago

10.3389/fmicb.2019.00861

Sample Processing Methods Impacts on Rumen Microbiome
Cited by: 10
Author(s): Gonzalo Martínez Fernández, Stuart E. Denman, Christopher S. McSweeney
Software Mentions: 4
Published: over 7 years ago

10.1186/s40168-015-0089-2

Linear growth faltering in infants is associated with Acidaminococcus sp. and community-level changes in the gut microbiota
Cited by: 101
Author(s): Ethan Gough, David A. Stephens, Erica E. M. Moodie, Andrew J. Prendergast, Rebecca J. Stoltzfus, Jean H. Humphrey, Amee R. Manges
Software Mentions: 4
Published: over 11 years ago

10.3390/plants10010005

Single and Combined Abiotic Stress in Maize Root Morphology
Cited by: 11
Author(s): Rosa Vescio, Maria Rosa Abenavoli, Agostino Sorgonà
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2021.643731

Seed Banks as Incidental Fungi Banks: Fungal Endophyte Diversity in Stored Seeds of Banana Wild Relatives
Cited by: 11
Author(s): Rowena Hill, Theo Llewellyn, Elizabeth Downes, Joseph Oddy, Catriona MacIntosh, Simon Kallow, Bart Panis, John B. Dickie, Ester Gaya
Software Mentions: 4
Published: over 5 years ago

10.3390/metabo10120518

Using Community Science to Reveal the Global Chemogeography of River Metabolomes
Cited by: 21
Author(s): Vanessa Garayburu‐Caruso, Robert Danczak, James C. Stegen, Lupita Renteria, Marcy L. McCall, Amy Goldman, Rosalie K. Chu, Jason Toyoda, Charles T. Resch, Joshua M. Torgeson, Jacqueline Wells, Sarah Fansler, Swatantar Kumar, Emily B. Graham
Software Mentions: 4
Published: over 5 years ago

10.1007/s11306-017-1259-y

Non-invasive real time monitoring of yeast volatilome by PTR-ToF-MS
Cited by: 20
Author(s): Iuliia Khomenko, Irene Stefanini, Luca Cappellin, Valentina Cappelletti, Pietro Franceschi, Duccio Cavalieri, T.D. Märk, Franco Biasioli
Software Mentions: 4
Published: about 9 years ago

10.3389/fmicb.2020.01979

Genomic Comparison and Spatial Distribution of Different Synechococcus Phylotypes in the Black Sea
Cited by: 11
Author(s): Andrea Di Cesare, Nina Dzhembekova, Pedro J. Cabello‐Yeves, Ester M. Eckert, Violeta Slabakova, Nataliya Slabakova, Elisaveta Peneva, Roberto Bertoni, Gianluca Corno, Michaela M. Salcher, Lyudmila Kamburska, Filippo Bertoni, Francisco Rodrı́guez-Valera, Snejana Moncheva, Cristiana Callieri
Software Mentions: 4
Published: about 6 years ago

10.1186/s42523-021-00098-0

The microbiota of healthy dogs demonstrates individualized responses to synbiotic supplementation in a randomized controlled trial
Cited by: 6
Author(s): Jirayu Tanprasertsuk, Aashish R. Jha, Justin Shmalberg, Roshonda B. Jones, Lee M. Perry, Heather Maughan, Ryan W. Honaker
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0243748

Diversity and functional prediction of microbial communities involved in the first aerobic bioreactor of coking wastewater treatment system
Cited by: 14
Author(s): Jinsi Deng, Baoshan Zhang, Junting Xie, Haixia Wu, Zemin Li, Guanglei Qiu, Chaohai Wei, Shuang Zhu
Software Mentions: 4
Published: almost 6 years ago

10.3390/plants10071466

Isolation and Characterization of Pseudomonas chlororaphis Strain ST9; Rhizomicrobiota and in Planta Studies
Cited by: 4
Author(s): Iris Bertani, Elisa Zampieri, Cristina Bez, Andrea Volante, Vittorio Venturi, Stefano Monaco
Software Mentions: 4
Published: about 5 years ago

10.1111/1755-0998.12956

Metabarcoding of shrimp stomach content: Harnessing a natural sampler for fish biodiversity monitoring
Cited by: 48
Author(s): Andjin Siegenthaler, Owen S. Wangensteen, Ana Z. Soto, Chiara Benvenuto, Laura Corrigan, Stefano Mariani
Software Mentions: 4
Published: almost 8 years ago

10.1186/s13568-017-0491-1

Responses of zinc recovery to temperature and mineral composition during sphalerite bioleaching process
Cited by: 9
Author(s): Yunhua Xiao, Xueduan Liu, Jun Fang, Yili Liang, Xian Zhang, Delong Meng, Huaqun Yin
Software Mentions: 4
Published: almost 9 years ago

10.3389/fmicb.2012.00252

Global Biodiversity of Aquatic Ammonia-Oxidizing Archaea is Partitioned by Habitat
Cited by: 86
Author(s): Steven J. Biller, Annika C. Mosier, George F. Wells, Christopher A. Francis
Software Mentions: 4
Published: over 14 years ago

10.3389/fmicb.2016.01933

Local and Regional Diversity Reveals Dispersal Limitation and Drift as Drivers for Groundwater Bacterial Communities from a Fractured Granite Formation
Cited by: 16
Author(s): Danielle Beaton, Bradley S. Stevenson, K.J. King-Sharp, Blake W. Stamps, Heather S. Nunn, Marilyne Stuart
Software Mentions: 4
Published: almost 10 years ago

10.1371/journal.pone.0240037

Changes in root-associated fungal communities in Triticum aestivum ssp. spelta L. and Triticum aestivum ssp. vulgare L. under drought stress and in various soil processing
Cited by: 12
Author(s): Sylwia Salamon, Katarzyna Mikołajczak, Lidia Błaszczyk, Karolina Ratajczak, H. Sulewska
Software Mentions: 4
Published: almost 6 years ago

10.3390/antiox10020323

Antioxidant Effect of a Probiotic Product on a Model of Oxidative Stress Induced by High-Intensity and Duration Physical Exercise
Cited by: 17
Author(s): Maravillas Sánchez-Macarro, Vicente Ávila-Gandía, Silvia Pérez-Piñero, Fernando Cánovas, Ana María García-Muñoz, María Salud Abellán-Ruiz, Desirée Victoria-Montesinos, Antonio J. Luque-Rubia, Eric Climent, Salvador Genovés, Daniel Ramón, Empar Chenoll, Francisco Javier López-Román
Software Mentions: 4
Published: over 5 years ago

10.1186/s12898-020-00317-3

Endozoochorous dispersal by herbivores and omnivores is mediated by germination conditions
Cited by: 6
Author(s): Soroor Karimi, Mahmoud‐Reza Hemami, Mostafa Tarkesh, Christophe Baltzinger
Software Mentions: 4
Published: about 6 years ago

10.1002/ece3.6351

Dark diversity reveals importance of biotic resources and competition for plant diversity across habitats
Cited by: 10
Author(s): Camilla Fløjgaard, Jose W. Valdez, Lars Dalby, Jesper Erenskjold Moeslund, Kevin Kuhlmann Clausen, Rasmus Ejrnæs, Meelis Pärtel, Ane Kirstine Brunbjerg
Software Mentions: 4
Published: over 6 years ago

10.1002/ece3.6320

Changes in taxonomic and functional diversity of fish communities after catastrophic habitat alteration caused by construction of Three Gorges Dam
Cited by: 11
Author(s): Chen Zhang, Masami Fujiwara, Michaela Pawluk, Huanzhang Liu, Weiguo Cao, Xin Gao
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0195199

The ecological footprint of Acca sellowiana domestication maintains the residual vertebrate diversity in threatened highlands of Atlantic Forest
Cited by: 9
Author(s): Juliano André Bogoni, Maurício Eduardo Graipel, Nivaldo Peroni
Software Mentions: 4
Published: over 8 years ago

10.3390/plants9010052

Changes in an Arbuscular Mycorrhizal Fungi Community Along an Environmental Gradient
Cited by: 29
Author(s): Larissa Vieira, Danielle Karla Alves da Silva, Indra Elena Costa Escobar, Julyana Maria da Silva, Ingrid Andrêssa de Moura, Fritz Oehl, Gladstone Alves da Silva
Software Mentions: 4
Published: over 6 years ago

10.1007/s00253-018-8932-6

Insights into microbial communities mediating the bioremediation of hydrocarbon-contaminated soil from an Alpine former military site
Cited by: 63
Author(s): J.A. Siles, Rosa Margesin
Software Mentions: 4
Published: over 8 years ago

10.1002/ece3.7894

Improving the application of quantitative fatty acid signature analysis in soil food webs: The effects of diet fat content
Cited by: 2
Author(s): Jakob Kühn, Vanessa Henning, Liliane Rueß
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0212949

The nasal and oropharyngeal microbiomes of healthy livestock workers
Cited by: 15
Author(s): Ashley E. Kates, Mark Dalman, James C. Torner, Tara C. Smith
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0109642

Amphibian Beta Diversity in the Brazilian Atlantic Forest: Contrasting the Roles of Historical Events and Contemporary Conditions at Different Spatial Scales
Cited by: 36
Author(s): Fernando Rodrigues da Silva, Mário Almeida‐Neto, Mariana Victorino Nicolosi Arena
Software Mentions: 4
Published: almost 12 years ago

10.1002/ece3.6989

Effects of maternal genotypic identity and genetic diversity of the red mangrove Rhizophora mangle on associated soil bacterial communities: A field‐based experiment
Cited by: 9
Author(s): Hayley Craig, John Paul Kennedy, Donna J. Devlin, Richard D. Bardgett, Jennifer K. Rowntree
Software Mentions: 4
Published: almost 6 years ago

10.1016/j.baae.2020.09.009

Nutrient status not secondary metabolites drives herbivory and pathogen infestation across differently mycorrhized tree monocultures and mixtures
Cited by: 5
Author(s): Olga Ferlian, Esther-Marie Lintzel, Helge Bruelheide, Carlos A. Guerra, Heike Heklau, Stephanie D. Jurburg, Paul Kühn, Ainhoa Martínez‐Medina, Sybille B. Unsicker, Nico Eisenhauer, Martin Schädler
Software Mentions: 4
Published: about 5 years ago

10.1038/srep18061

Probiotic treatment reduces appetite and glucose level in the zebrafish model
Cited by: 80
Author(s): Silvia Falcinelli, Ana Rodiles, Suraj Unniappan, Simona Picchietti, Giorgia Gioacchini, Daniel L. Merrifield, Oliana Carnevali
Software Mentions: 4
Published: over 10 years ago

10.3390/plants10071452

Alternative Control of Phragmidium rubi-idaei Infecting Two Rubus Species
Cited by: 3
Author(s): Raluca-Maria Pârlici, Aurel Maxim, Ștefania Mirela Mang, Ippolito Camele, Lucia Mihălescu, Vlad Stoian
Software Mentions: 4
Published: about 5 years ago

10.1002/ece3.7005

Plant phylogeny drives arboreal caterpillar assemblages across the Holarctic
Cited by: 8
Author(s): Carlo L. Seifert, Martin Volf, Leonardo Ré Jorge, Tomokazu Abe, Grace Carscallen, Pavel Drozd, Rajesh Kumar, Greg P. A. Lamarre, Martin Libra, María Eugenia Losada, Scott E. Miller, Masashi Murakami, Geoffrey Nichols, Petr Pyszko, Martin Šigut, David L. Wagner, Vojtěch Novotný
Software Mentions: 4
Published: almost 6 years ago

10.1186/s40168-017-0328-9

Blood as a route of transmission of uterine pathogens from the gut to the uterus in cows
Cited by: 73
Author(s): Seong-Jeub Jeon, Federico Cunha, A. Vieira-Neto, R.C. Bicalho, Svetlana Lima, M.L.S. Bicalho, Klibs N. Galvão
Software Mentions: 4
Published: about 9 years ago

10.3389/fmicb.2017.00340

Clustering of Subgingival Microbiota Reveals Microbial Disease Ecotypes Associated with Clinical Stages of Periodontitis in a Cross-Sectional Study
Cited by: 33
Author(s): Sébastien Boutin, Daniel Hagenfeld, Heiko Zimmermann, Nihad El Sayed, Tanja Höpker, Halina Greiser, Heiko Becher, Ti‐Sun Kim, Alexander H. Dalpke
Software Mentions: 4
Published: over 9 years ago

10.1186/s40168-021-01071-4

A synthetic probiotic engineered for colorectal cancer therapy modulates gut microbiota
Cited by: 60
Author(s): Yusook Chung, Yongku Ryu, Byung Chull An, Yeo-Sang Yoon, Oksik Choi, Tai Yeub Kim, Jae Kyung Yoon, Jun Young Ahn, Ho Jin Park, Soon-Kyeong Kwon, Jihyun F. Kim, Myung Jun Chung
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0227130

Community- and trophic-level responses of soil nematodes to removal of a non-native tree at different stages of invasion
Cited by: 2
Author(s): Guadalupe Peralta, Ian A. Dickie, G. W. Yeates, Duane A. Peltzer
Software Mentions: 4
Published: over 6 years ago

10.1186/2049-2618-2-7

Bacterial communities on classroom surfaces vary with human contact
Cited by: 121
Author(s): James F. Meadow, Adam E. Altrichter, Steven W. Kembel, Maxwell Moriyama, Timothy K. O’Connor, A. M. Womack, Glen Brown, Jessica L. Green, B. J. M. Bohannan
Software Mentions: 4
Published: over 12 years ago

10.1371/journal.pone.0185793

The importance of vegetation density for tourists’ wildlife viewing experience and satisfaction in African savannah ecosystems
Cited by: 13
Author(s): Ugo Arbieu, Claudia Grünewald, Matthias Schleuning, Katrin Böhning‐Gaese
Software Mentions: 4
Published: almost 9 years ago

10.3389/fpls.2021.660658

Substrate Type Influences the Structure of Epiphyte Communities and the Growth of Posidonia oceanica Seedlings
Cited by: 1
Author(s): Davide De Battisti, Elena Balestri, G. Pardi, Virginia Menicagli, Claudio Lardicci
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.7983

Rolling pits of Hartmann’s mountain zebra ( Zebra equus hartmannae ) increase vegetation diversity and landscape heterogeneity in the Pre‐Namib
Cited by: 2
Author(s): Thomas C. Wagner, Kenneth Uiseb, Christina Fischer
Software Mentions: 4
Published: about 5 years ago

10.3389/fpls.2020.01075

Populations of the Parasitic Plant Phelipanche ramosa Influence Their Seed Microbiota
Cited by: 23
Author(s): Sarah Huet, Jean‐Bernard Pouvreau, Erwan Delage, Sabine Delgrange, Coralie Marais, Muriel Bahut, Philippe Delavault, Philippe Simier, Lucie Poulin
Software Mentions: 4
Published: about 6 years ago

10.1186/s40168-019-0671-0

Phyllosphere epiphytic and endophytic fungal community and network structures differ in a tropical mangrove ecosystem
Cited by: 118
Author(s): Hui Yao, Xiang Sun, Chunguang He, Pulak Maitra, Xingchun Li, Liang Guo
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0146324

Marine Fouling Assemblages on Offshore Gas Platforms in the Southern North Sea: Effects of Depth and Distance from Shore on Biodiversity
Cited by: 54
Author(s): Tim van der Stap, Joop W.P. Coolen, H.J. Lindeboom
Software Mentions: 4
Published: over 10 years ago

10.1186/s12866-021-02159-5

Azithromycin and the microbiota of cystic fibrosis sputum
Cited by: 10
Author(s): Nicole Acosta, Christina S. Thornton, Michael G. Surette, Ranjani Somayaji, Laura Rossi, Harvey Rabin, Michael D. Parkins
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2021.705724

New Estimation of Antibiotic Resistance Genes in Sediment Along the Haihe River and Bohai Bay in China: A Comparison Between Single and Successive DNA Extraction Methods
Cited by: 0
Author(s): Chao Wu, Guicheng Zhang, Wenzhe Xu, Shan Jian, Liyin Peng, Dai Jia, Jun Sun
Software Mentions: 4
Published: almost 5 years ago

10.3389/fmicb.2021.708475

Spatiotemporal Assembly of Bacterial and Fungal Communities of Seed-Seedling-Adult in Rice
Cited by: 8
Author(s): Hyun Kim, Yong-Hwan Lee
Software Mentions: 4
Published: about 5 years ago

10.1038/srep28484

Multiple sclerosis patients have a distinct gut microbiota compared to healthy controls
Cited by: 587
Author(s): Jun Chen, Nicholas Chia, Krishna R. Kalari, Jingwen Yao, Martina Novotná, M. Mateo Paz Soldán, David Luckey, Eric Marietta, Patricio Jeraldo, Xianfeng Chen, Brian G. Weinshenker, Moses Rodriguez, Orhun H. Kantarci, Heidi Nelson, Joseph A. Murray, Ashutosh K. Mangalam
Software Mentions: 4
Published: about 10 years ago

10.1371/journal.pone.0219633

Contributions to human breast milk microbiome and enteromammary transfer of Bifidobacterium breve
Cited by: 72
Author(s): Kattayoun Kordy, Thaidra Gaufin, Martin Mwangi, Ли Фан, Chiara Cerini, Dong Hoon Lee, Helty Adisetiyo, Cora L. Woodward, Pia S. Pannaraj, Nicole H. Tobin, Grace M. Aldrovandi
Software Mentions: 4
Published: over 6 years ago

10.3390/insects11010026

How Bees Respond Differently to Field Margins of Shrubby and Herbaceous Plants in Intensive Agricultural Crops of the Mediterranean Area
Cited by: 11
Author(s): J. Sánchez, Aline Carrasco, Michelangelo La Spina, María Pérez‐Marcos, F. J. Ortiz-Sánchez
Software Mentions: 4
Published: over 6 years ago

10.7717/peerj.7295

Shared mycorrhizae but distinct communities of other root-associated microbes on co-occurring native and invasive maples
Cited by: 7
Author(s): Tonia DeBellis, Steven W. Kembel, Jean‐Philippe Lessard
Software Mentions: 4
Published: about 7 years ago

10.1111/gcb.15091

Disentangling the effects of plant species invasion and urban development on arthropod community composition
Cited by: 14
Author(s): Wendy Jesse, Jasper Molleman, Oscar Franken, Mark Lammers, Matty P. Berg, Jocelyn E. Behm, Matthew R. Helmus, Jacintha Ellers
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2014.00752

Seasonal dynamics of bacterial and archaeal methanogenic communities in flooded rice fields and effect of drainage
Cited by: 58
Author(s): BjÃ¶rn Breidenbach, Ralf Conrad
Software Mentions: 4
Published: over 11 years ago

10.7554/eLife.13195

Resistome diversity in cattle and the environment decreases during beef production
Cited by: 88
Author(s): Noelle Noyes, Xiang Yang, Lyndsey Linke, Roberta J. Magnuson, Adam Dettenwanger, Shaun R. Cook, Ifigenia Geornaras, D. Woerner, Sheryl Gow, Tim A. McAllister, Hua Yang, Jaime Ruiz, Kenneth L. Jones, Christina Boucher, Paul S. Morley, K. E. Belk
Software Mentions: 4
Published: over 10 years ago

10.7554/eLife.60197

Effects of domestication on the gut microbiota parallel those of human industrialization
Cited by: 37
Author(s): Aspen T. Reese, Katia S. Chadaideh, Caroline E. Diggins, Laura D. Schell, Mark Beckel, Peggy Callahan, Roberta Ryan, Melissa Emery Thompson, Rachel N. Carmody
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.47612

Evolutionary pathways to antibiotic resistance are dependent upon environmental structure and bacterial lifestyle
Cited by: 107
Author(s): Alfonso Santos-López, C. W. Marshall, Michelle R. Scribner, Donald R. Snyder, Vaughn S. Cooper
Software Mentions: 4
Published: about 7 years ago

10.1093/gigascience/gix107

HOMINID: a framework for identifying associations between host genetic variation and microbiome composition
Cited by: 8
Author(s): Joshua Lynch, Karen Tang, Sambhawa Priya, Joanna Sands, Margaret Sands, Evan Tang, Sayan Mukherjee, Dan Knights, Ran Blekhman
Software Mentions: 4
Published: almost 9 years ago

10.1093/gigascience/gix058

Connections between the human gut microbiome and gestational diabetes mellitus
Cited by: 178
Author(s): Yashu Kuang, Jinhua Lu, Shenghui Li, Junhua Li, Mingyang Yuan, Jianxing He, Niannian Chen, Wan-Qing Xiao, Shi‐Li Shen, Lan Qiu, Yongming Wu, Cui-Yue Hu, Yanyan Wu, Weidong Li, Qiaozhu Chen, Hong‐Wen Deng, Christopher J. Papasian, Huimin Xia, Xiu Qiu
Software Mentions: 4
Published: about 9 years ago

10.1093/femsec/fiy194

Prokaryotic communities of Indo-Pacific giant barrel sponges are more strongly influenced by geography than host phylogeny
Cited by: 24
Author(s): Thomas Swierts, Daniel F. R. Cleary, Nicole J. de Voogd
Software Mentions: 4
Published: almost 8 years ago

10.1007/s11356-020-11597-z

Trace elements fingerprint of feathers differs between breeding and non-breeding areas in an Afro-Palearctic migratory bird, the barn swallow (Hirundo rustica)
Cited by: 4
Author(s): Marco Parolini, Michela Sturini, Federica Maraschi, Antonella Profumo, Alessandra Costanzo, Manuela Caprioli, Diego Rubolini, Roberto Ambrosini, Luca Canova
Software Mentions: 4
Published: almost 6 years ago

10.1007/s11356-021-13474-9

Are the existing guidelines sufficient for the assessment of bathing water quality? The example of Polish lakes
Cited by: 0
Author(s): Eugeniusz Pronin
Software Mentions: 4
Published: over 5 years ago

10.1038/ejhg.2014.1

Using ancestry-informative markers to identify fine structure across 15 populations of European origin
Cited by: 29
Author(s): Laura Huckins, Vesna Boraska, Christopher S. Franklin, James A B Floyd, Lorraine Southam, Gcan, Wtccc, Patrick F. Sullivan, Cynthia M. Bulik, David A. Collier, Chris Tyler‐Smith, Eleftheria Zeggini, Ioanna Tachmazidou
Software Mentions: 4
Published: over 12 years ago

10.1186/s13073-021-00856-4

Trans-ethnic gut microbiota signatures of type 2 diabetes in Denmark and India
Cited by: 29
Author(s): Camila Alvarez-Silva, Alireza Kashani, Torben Hansen, Nishal Kumar Pinna, Ranjit Mohan Anjana, Anirban Dutta, Shruti Saxena, Julie Støy, Ulla Kampmann, Trine Nielsen, Torben Jørgensen, Visvanathan Gnanaprakash, Rameshkumar Gnanavadivel, Sukumaran Aswath, Coimbatore Subramanian Shanthi Rani, Kristine Færch, Venkatesan Radha, Muthuswamy Balasubramanyam, G. Balakrish Nair, Bhabatosh Das, Henrik Vestergaard, Torben Hansen, Sharmila S. Mande, Viswanathan Mohan, Manimozhiyan Arumugam, Oluf Pedersen
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2020.569630

Effects of Extended Postmortem Interval on Microbial Communities in Organs of the Human Cadaver
Cited by: 21
Author(s): H Lutz, Alexandria Vangelatos, Neil Gottel, Antonio Marco Maria Osculati, Silvia Damiana Visonà, Sheree J. Finley, Jack A. Gilbert, Gulnaz T. Javan
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2019.01332

Functional Traits and Spatio-Temporal Structure of a Major Group of Soil Protists (Rhizaria: Cercozoa) in a Temperate Grassland
Cited by: 68
Author(s): Anna Maria Fiore-Donno, Tim Richter-Heitmann, Florine Degrune, Kenneth Dumack, Kathleen M. Regan, Sven Marhan, Runa S. Boeddinghaus, Matthias C. Rillig, Michael W. Friedrich, Ellen Kandeler, Michael Bonkowski
Software Mentions: 4
Published: over 7 years ago

10.1093/femsec/fiab054

Relative contributions of egg-associated and substrate-associated microorganisms to black soldier fly larval performance and microbiota
Cited by: 12
Author(s): Stijn J. J. Schreven, Hugo de Vries, Gerben D. A. Hermes, Hauke Smidt, Marcel Dicke, J.J.A. van Loon
Software Mentions: 4
Published: over 5 years ago

10.1186/s40168-017-0337-8

More than 2500 years of oil exposure shape sediment microbiomes with the potential for syntrophic degradation of hydrocarbons linked to methanogenesis
Cited by: 22
Author(s): Antonios Michas, Gisle Vestergaard, Kathleen Trautwein, Pavlos Avramidis, Dimitris G. Hatzinikolaou, Constantinos E. Vorgias, Heinz Wilkes, Ralf Rabus, Michael Schloter, Anne Schöler
Software Mentions: 4
Published: about 9 years ago

10.1128/mSphere.01237-20

Soil Health Management Enhances Microbial Nitrogen Cycling Capacity and Activity
Cited by: 16
Author(s): Jialin Hu, Virginia L. Jin, Julie Y. M. Konkel, Sean M. Schaeffer, Liesel G Schneider, Jennifer M. DeBruyn
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0231238

Metabolic versatility of freshwater sedimentary archaea feeding on different organic carbon sources
Cited by: 5
Author(s): Sergi Compte-Port, Mireia Fillol, Frédéric Gich, Carles M. Borrego
Software Mentions: 4
Published: over 6 years ago

10.1128/mSphere.00936-20

Randomized Controlled Trial of Oral Vancomycin Treatment in Clostridioides difficile-Colonized Patients
Cited by: 18
Author(s): Skye Fishbein, Tiffany Hink, Kimberly A. Reske, Candice Cass, Emily Struttmann, Zainab Hassan Iqbal, Sondra Seiler, Jennie H. Kwon, Carey‐Ann D. Burnham, Gautam Dantas, Erik R. Dubberke
Software Mentions: 4
Published: over 5 years ago

10.1128/mSphere.00227-21

Microbiome Analysis Reveals Diversity and Function of Mollicutes Associated with the Eastern Oyster, Crassostrea virginica
Cited by: 16
Author(s): Zachary T. Pimentel, Keith Dufault‐Thompson, Kayla T. Russo, Abigail K. Scro, Roxanna Smolowitz, Marta Gómez-Chiarri, Ying Zhang
Software Mentions: 4
Published: about 5 years ago

10.3390/nu12113557

High Fat-High Fructose Diet-Induced Changes in the Gut Microbiota Associated with Dyslipidemia in Syrian Hamsters
Cited by: 29
Author(s): Rachael Horne, Yifan Yu, Rianna Zhang, Nyan Abdalqadir, Laura Rossi, Michael G. Surette, Philip M. Sherman, Khosrow Adeli
Software Mentions: 4
Published: almost 6 years ago

10.1128/mSphere.00562-20

Nasal Tissue Extraction Is Essential for Characterization of the Murine Upper Respiratory Tract Microbiota
Cited by: 4
Author(s): L. Patrick Schenck, Joshua J.C. McGrath, Daphnée Lamarche, Martin R. Stämpfli, Dawn M. E. Bowdish, Michael G. Surette
Software Mentions: 4
Published: over 5 years ago

10.1186/s40168-020-00940-8

Perinatal environment shapes microbiota colonization and infant growth: impact on host response and intestinal function
Cited by: 43
Author(s): Marta Selma‐Royo, Marta Calatayud, Izaskun García-Mantrana, Anna Parra-Llorca, Ramón Escuriet, Cecilia Martínez‐Costa, María Carmen Collado
Software Mentions: 4
Published: almost 6 years ago

10.1128/mSphere.00525-21

Proteorhodopsin Phototrophy in Antarctic Coastal Waters
Cited by: 2
Author(s): Jerónimo Cifuentes-Anticevic, María E. Alcamán-Arias, Tomás Alarcón-Schumacher, Javier Tamayo-Leiva, Carlos Pedrós-Alió, Laura Farı́as, Beatriz Dı́ez
Software Mentions: 4
Published: about 5 years ago

Projects: cran: vegan

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Papers Mentioning vegan 6,903