10.1371/journal.pone.0066829

Forest Age and Plant Species Composition Determine the Soil Fungal Community Composition in a Chinese Subtropical Forest
Cited by: 47
Author(s): Yu Wu, Tesfaye Wubet, Stefan Trogisch, Sabine Both, Thomas Scholten, Helge Bruelheide, François Buscot
Software Mentions: 4
Published: about 13 years ago

10.3389/fmicb.2019.00169

Biogeographic Patterns and Assembly Mechanisms of Bacterial Communities Differ Between Habitat Generalists and Specialists Across Elevational Gradients
Cited by: 43
Author(s): Luo Zhengming, Jinxian Liu, Pengyu Zhao, Tong Jia, Cui Li, Bo Chai
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-018-28939-0

Agulhas Current properties shape microbial community diversity and potential functionality
Cited by: 10
Author(s): Sandra Phoma, Surendra Vikram, Janet Jansson, Isabelle Ansorge, Don A. Cowan, Yves Van de Peer, Thulani P. Makhalanyane
Software Mentions: 4
Published: about 8 years ago

10.3390/v12090931

Tracking Community Timing: Pattern and Determinants of Seasonality in Culicoides (Diptera: Ceratopogonidae) in Northern Florida
Cited by: 8
Author(s): Agustín Quaglia, Erik M. Blosser, Bethany L. McGregor, Alfred E. Runkel, Kristin E. Sloyer, Dinesh Erram, Samantha M. Wisely, Nathan D. Burkett‐Cadena
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0225252

I’ve been robbed! – Can changes in floral traits discourage bee pollination?
Cited by: 2
Author(s): Camila Vaz de Souza, Maíra Vidor Salvador, Priscila Tunes, Luiz Cláudio Di Stasi, Elza Guimarães
Software Mentions: 4
Published: almost 7 years ago

10.3389/fmicb.2019.00994

Bacterial Community Diversity and Screening of Growth-Affecting Bacteria From Isochrysis galbana Following Antibiotic Treatment
Cited by: 7
Author(s): Jiasheng Cao, Z.-P. Kong, Yufan Zhang, Ting Ling, Jilin Xu, Kai Liao, Chengxu Zhou, Xiaojun Yan
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0165800

Low CO2 Sensitivity of Microzooplankton Communities in the Gullmar Fjord, Skagerrak: Evidence from a Long-Term Mesocosm Study
Cited by: 16
Author(s): Henriette G. Horn, Nils Sander, Annegret Stuhr, María Algueró-Muñiz, Lennart T. Bach, Martin G. J. Löder, Maarten Boersma, Ulf Riebesell, Nicole Aberle
Software Mentions: 4
Published: almost 10 years ago

10.1371/journal.pone.0165987

Networks Depicting the Fine-Scale Co-Occurrences of Fungi in Soil Horizons
Cited by: 67
Author(s): Hirokazu Toju, Osamu Kishida, Noboru Katayama, Kentaro Takagi
Software Mentions: 4
Published: almost 10 years ago

10.7554/eLife.13195

Resistome diversity in cattle and the environment decreases during beef production
Cited by: 88
Author(s): Noelle Noyes, Xiang Yang, Lyndsey Linke, Roberta J. Magnuson, Adam Dettenwanger, Shaun R. Cook, Ifigenia Geornaras, D. Woerner, Sheryl Gow, Tim A. McAllister, Hua Yang, Jaime Ruiz, Kenneth L. Jones, Christina Boucher, Paul S. Morley, K. E. Belk
Software Mentions: 4
Published: over 10 years ago

10.1038/s41396-021-00988-w

Metabolic flexibility allows bacterial habitat generalists to become dominant in a frequently disturbed ecosystem
Cited by: 68
Author(s): Ya Jou Chen, Pok Man Leung, Jennifer L. Wood, Sean K. Bay, Philip Hugenholtz, Adam J. Kessler, Guy Shelley, David W. Waite, Ashley E. Franks, Perran L. M. Cook, Chris Greening
Software Mentions: 4
Published: over 5 years ago

10.1111/gcb.14495

Extreme drought pushes stream invertebrate communities over functional thresholds
Cited by: 65
Author(s): Thomas W. H. Aspin, Kieran Khamis, Thomas J. Matthews, Alexander M. Milner, Matthew J. O’Callaghan, Mark Trimmer, Guy Woodward, Mark E. Ledger
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0231122

Direct and indirect effects of land-use intensity on plant communities across elevation in semi-natural grasslands
Cited by: 8
Author(s): Oksana Y. Buzhdygan, Britta Tietjen, Svitlana Rudenko, Volodymyr A. Nikorych, Jana S. Petermann
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0250514

Insights into the microbial diversity and structure in a full-scale municipal wastewater treatment plant with particular regard to Archaea
Cited by: 8
Author(s): Grażyna Płaza, Łukasz Jałowiecki, Dominika Głowacka, Jakub Hubeny, Monika Harnisz, Ewa Korzeniewska
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-018-28550-3

Analysis of the Gut Microbiome of Rural and Urban Healthy Indians Living in Sea Level and High Altitude Areas
Cited by: 92
Author(s): Bhabatosh Das, Tarini Shankar Ghosh, Saurabh Kedia, Ritika Rampal, Shruti Saxena, Satyabrata Bag, Ridhima Mitra, Mayanka Dayal, Ojasvi Mehta, Adarsh Surendranath, Simon Travis, Prabhanshu Tripathi, G. Balakrish Nair, Vineet Ahuja
Software Mentions: 4
Published: about 8 years ago

10.1002/ece3.7067

Compartmentalized organization of ecological niche occupation in insular invertebrate communities
Cited by: 5
Author(s): Sebastian Steibl, Christian Laforsch
Software Mentions: 4
Published: almost 6 years ago

10.3897/BDJ.5.e13564

Long-term monitoring of diversity and structure of two stands of an Atlantic Tropical Forest
Cited by: 3
Author(s): Écio Souza Diniz, Warley Augusto Caldas Carvalho, Rubens Manoel dos Santos, Markus Gastauer, Paulo Oswaldo Garcia, Marco Aurélio Leite Fontes, Polyanne Aparecida Coelho, Aline Martins Moreira, Gisele Cristina Oliveira Menino, Ary Teixeira de Oliveira‐Filho
Software Mentions: 4
Published: about 9 years ago

10.1002/ece3.5816

Spatial and temporal structure of diversity and demographic dynamics along a successional gradient of tropical forests in southern Brazil
Cited by: 18
Author(s): Cilmar Antônio Dalmaso, Márcia C. M. Marques, Pedro Higuchi, Victor P. Zwiener, Renato Marques
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2019.02302

Exploring the Link Between the Geographical Origin of European Fermented Foods and the Diversity of Their Bacterial Communities: The Case of Fermented Meats
Cited by: 35
Author(s): Emiel Niels Van Reckem, Wim Geeraerts, Christina Charmpi, David Van der Veken, Luc De Vuyst, Frédéric Leroy
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12866-021-02159-5

Azithromycin and the microbiota of cystic fibrosis sputum
Cited by: 10
Author(s): Nicole Acosta, Christina S. Thornton, Michael G. Surette, Ranjani Somayaji, Laura Rossi, Harvey Rabin, Michael D. Parkins
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0183999

Marine protected areas increase temporal stability of community structure, but not density or diversity, of tropical seagrass fish communities
Cited by: 9
Author(s): Elisa Alonso Aller, Narriman Jiddawi, Johan Eklöf
Software Mentions: 4
Published: about 9 years ago

10.3389/fmicb.2017.00340

Clustering of Subgingival Microbiota Reveals Microbial Disease Ecotypes Associated with Clinical Stages of Periodontitis in a Cross-Sectional Study
Cited by: 33
Author(s): Sébastien Boutin, Daniel Hagenfeld, Heiko Zimmermann, Nihad El Sayed, Tanja Höpker, Halina Greiser, Heiko Becher, Ti‐Sun Kim, Alexander H. Dalpke
Software Mentions: 4
Published: over 9 years ago

10.7717/peerj.7501

Improvement of subsoil physicochemical and microbial properties by short-term fallow practices
Cited by: 4
Author(s): Guangyu Li, Walter Timo de Vries, Cifang Wu, Hongyu Zheng
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-018-27476-0

Host-plant induced changes in microbial community structure and midgut gene expression in an invasive polyphage (Anoplophora glabripennis)
Cited by: 20
Author(s): Erin D. Scully, Scott M. Geib, Charles J. Mason, John E. Carlson, Ming Tien, Han Yi Chen, Chung‐Jui Tsai, Chung‐Jui Tsai, Kelli Hoover
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pone.0235868

Cover crop mixture expression is influenced by nitrogen availability and growing degree days
Cited by: 13
Author(s): Bàrbara Baraibar, Ebony G. Murrell, Brosi A. Bradley, Mary E. Barbercheck, David A. Mortensen, Jason P. Kaye, Charles M. White
Software Mentions: 4
Published: about 6 years ago

10.1186/s12864-017-4392-0

Molecular characterization of larval development from fertilization to metamorphosis in a reef-building coral
Cited by: 36
Author(s): Marie E. Strader, Galina V. Aglyamova, Mikhail V. Matz
Software Mentions: 4
Published: over 8 years ago

10.3390/metabo10120518

Using Community Science to Reveal the Global Chemogeography of River Metabolomes
Cited by: 21
Author(s): Vanessa Garayburu‐Caruso, Robert Danczak, James C. Stegen, Lupita Renteria, Marcy L. McCall, Amy Goldman, Rosalie K. Chu, Jason Toyoda, Charles T. Resch, Joshua M. Torgeson, Jacqueline Wells, Sarah Fansler, Swatantar Kumar, Emily B. Graham
Software Mentions: 4
Published: over 5 years ago

10.3390/v12090922

Impact of Viral Lysis on the Composition of Bacterial Communities and Dissolved Organic Matter in Deep-Sea Sediments
Cited by: 14
Author(s): Mara Elena Heinrichs, Dennis Alexander Tebbe, Bernd Wemheuer, Jutta Niggemann, Bert Engelen
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0212725

Forest fragmentation and impacts of intensive agriculture: Responses from different tree functional groups
Cited by: 5
Author(s): Juliana Cristina Tenius Ribeiro, André Felippe Nunes-Freitas, E. C. C. Fidalgo, Mariella Camardelli Uzêda
Software Mentions: 4
Published: about 7 years ago

10.1002/evl3.176

Rapid local adaptation linked with phenotypic plasticity
Cited by: 13
Author(s): Syuan‐Jyun Sun, Andrew M. Catherall, Sónia Pascoal, Benjamin J. M. Jarrett, Sara Miller, Michael J. Sheehan, Rebecca M. Kilner
Software Mentions: 4
Published: about 6 years ago

10.1093/femsec/fiz128

Biogeographical patterns in soil bacterial communities across the Arctic region
Cited by: 49
Author(s): Lucie Malard, Muhammad Zohaib Anwar, Carsten Suhr Jacobsen, David A. Pearce
Software Mentions: 4
Published: about 7 years ago

10.3389/fmicb.2021.682886

Beyond Taxonomic Identification: Integration of Ecological Responses to a Soil Bacterial 16S rRNA Gene Database
Cited by: 5
Author(s): Briony Jones, Tim Goodall, Paul B. L. George, Hyun S. Gweon, Jérémy Puissant, Daniel S. Read, Bridget Emmett, David A. Robinson, Davey L. Jones, Robert I. Griffiths
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0200179

A precipitation gradient drives change in macroinvertebrate composition and interactions within bromeliads
Cited by: 2
Author(s): Laura Melissa Guzman, Bram Vanschoenwinkel, Vinicius F. Farjalla, A Poon, Diane S. Srivastava
Software Mentions: 4
Published: almost 8 years ago

10.1093/aobpla/plab015

Ecotypic differentiation of a circumpolar Arctic-alpine species at mid-latitudes: variations in the ploidy level and reproductive system of <i>Vaccinium vitis-idaea</i>
Cited by: 3
Author(s): Akimi Wakui, Gaku Kudo
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0222272

Mortality, perception, and scale: Understanding how predation shapes space use in a wild prey population
Cited by: 6
Author(s): Lindsey N. Messinger, Erica F. Stuber, Christopher J. Chizinski, Joseph J. Fontaine
Software Mentions: 4
Published: almost 7 years ago

10.3389/fmicb.2017.02269

Bacterial Succession on Sinking Particles in the Ocean's Interior
Cited by: 40
Author(s): Erik A. Pelve, Kristina M. Fontanez, Edward F. DeLong
Software Mentions: 4
Published: almost 9 years ago

10.1371/journal.pone.0047722

Beyond Streptococcus mutans: Dental Caries Onset Linked to Multiple Species by 16S rRNA Community Analysis
Cited by: 378
Author(s): Erin L. Gross, Clifford J. Beall, Stacey R. Kutsch, Noah D. Firestone, Eugene J. Leys, Ann L. Griffen
Software Mentions: 4
Published: almost 14 years ago

10.3389/fmicb.2020.01869

Comparative Genomics of Microbacterium Species to Reveal Diversity, Potential for Secondary Metabolites and Heavy Metal Resistance
Cited by: 20
Author(s): Erika Corretto, Livio Antonielli, Angela Sessitsch, Christoph Höfer, Markus Puschenreiter, Siegrid Widhalm, Karivaradharajan Swarnalakshmi, Günter Brader
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0199132

Effects of low dose silver nanoparticle treatment on the structure and community composition of bacterial freshwater biofilms
Cited by: 23
Author(s): Alexandra Grün, Constantin Benjamin App, Andreas Breidenbach, Jutta Meier, George Metreveli, Gabriele E. Schaumann, Werner Manz
Software Mentions: 4
Published: over 8 years ago

10.3390/jof7030175

Pineapple Mycobiome Related to Fruitlet Core Rot Occurrence and the Influence of Fungal Species Dispersion Patterns
Cited by: 6
Author(s): Manon Vignassa, Jean-Christophe Meile, Frédéric Chiroleu, Christian Soria, Charlène Leneveu‐Jenvrin, Sabine Schorr‐Galindo, Marc Chillet
Software Mentions: 4
Published: over 5 years ago

10.1128/mSystems.00296-19

Functional Gene Array-Based Ultrasensitive and Quantitative Detection of Microbial Populations in Complex Communities
Cited by: 47
Author(s): Zhou Shi, Huaqun Yin, Joy D. Van Nostrand, James W. Voordeckers, Qichao Tu, Ye Deng, Mengting Yuan, Aifen Zhou, Ping Zhang, Naijia Xiao, Daliang Ning, Zhili He, Liyou Wu, Jizhong Zhou
Software Mentions: 4
Published: about 7 years ago

10.3390/genes8100273

The History of Tree and Shrub Taxa on Bol'shoy Lyakhovsky Island (New Siberian Archipelago) since the Last Interglacial Uncovered by Sedimentary Ancient DNA and Pollen Data
Cited by: 35
Author(s): Heike Zimmermann, Elena Raschke, Laura S. Epp, Kathleen R. Stoof‐Leichsenring, Lutz Schirrmeister, Georg Schwamborn, Ulrike Herzschuh
Software Mentions: 4
Published: almost 9 years ago

10.1038/s41598-018-27650-4

MS analysis of a dilution series of bacteria:phytoplankton to improve detection of low abundance bacterial peptides
Cited by: 4
Author(s): Emma Timmins‐Schiffman, Molly P. Mikan, Ying S. Ting, H. Rodger Harvey, Brook L. Nunn
Software Mentions: 4
Published: over 8 years ago

10.3390/ani11092497

Human Decision-Making as a Key Factor in the Risk of Wolf–Dog Interactions during Outdoor Activities
Cited by: 3
Author(s): Andżelika Haidt, Radosław Gawryś, Maciej Szewczyk
Software Mentions: 4
Published: about 5 years ago

10.1186/s13062-020-00287-y

Systematic evaluation of supervised machine learning for sample origin prediction using metagenomic sequencing data
Cited by: 11
Author(s): Chih-Yu Chen, Andrea D. Tyler
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0231838

Crewmember microbiome may influence microbial composition of ISS habitable surfaces
Cited by: 47
Author(s): Aram Avila-Herrera, James B. Thissen, Camilla Urbaniak, Nicholas A. Be, David J. Smith, Fathi Karouia, Satish K. Mehta, Kasthuri Venkateswaran, Crystal Jaing
Software Mentions: 4
Published: over 6 years ago

10.1186/s13071-021-04579-8

Blood meal source and mixed blood-feeding influence gut bacterial community composition in Aedes aegypti
Cited by: 14
Author(s): Ephantus J. Muturi, Teresia Muthoni Njoroge, Christopher A. Dunlap, Carla E. Cáceres
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-018-27493-z

A gene co-expression network model identifies yield-related vicinity networks in Jatropha curcas shoot system
Cited by: 5
Author(s): Nisha Govender, Siju Senan, Zeti‐Azura Mohamed‐Hussein, R Wickneswari V Ratnam
Software Mentions: 4
Published: over 8 years ago

10.1186/s13068-018-1193-x

Increasing the economic value of lignocellulosic stillage through medium-chain fatty acid production
Cited by: 91
Author(s): Matthew Scarborough, Griffin Lynch, Mitch Dickson, Mick McGee, Timothy J. Donohue, Daniel R. Noguera
Software Mentions: 4
Published: about 8 years ago

10.1002/ece3.6101

Effects of seed morphology and elaiosome chemical composition on attractiveness of five<i>Trillium</i>species to seed‐dispersing ants
Cited by: 14
Author(s): Chelsea N. Miller, Susan R. Whitehead, Charles Kwit
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-018-27314-3

Sample tracking in microbiome community profiling assays using synthetic 16S rRNA gene spike-in controls
Cited by: 16
Author(s): Dieter M. Tourlousse, Akiko Ohashi, Yuji Sekiguchi
Software Mentions: 4
Published: over 8 years ago

10.3389/fmicb.2021.636986

Metabolic Potential, Ecology and Presence of Associated Bacteria Is Reflected in Genomic Diversity of Mucoromycotina
Cited by: 10
Author(s): Anna Muszewska, Alicja Okrasińska, Kamil Steczkiewicz, Olga Drgas, Małgorzata Orłowska, Urszula Perlińska-Lenart, Tamara Aleksandrzak‐Piekarczyk, Katarzyna Szatraj, Urszula Zielenkiewicz, Sebastian Piłsyk, Ewa Malc, Piotr A. Mieczkowski, Joanna S. Kruszewska, Przemysław Bernat, Julia Pawłowska
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.1241

Partitioning the impact of environment and spatial structure on alpha and beta components of taxonomic, functional, and phylogenetic diversity in European ants
Cited by: 74
Author(s): Xavier Arnán, Xím Cerdá, Javier Retana
Software Mentions: 4
Published: almost 11 years ago

10.1038/s41598-021-83417-4

Soil mite communities (Acari: Mesostigmata) as indicators of urban ecosystems in Bucharest, Romania
Cited by: 9
Author(s): Minodora Manu, Raluca Ioana Băncilă, Constantin-Ciprian Bîrsan, Owen Mountford, Marilena Onete
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.9364

Epifaunal invertebrate assemblages associated with branching Pocilloporids in Moorea, French Polynesia
Cited by: 7
Author(s): Chiara Pisapia, Jessica Stella, Nyssa J. Silbiger, Robert C. Carpenter
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0184062

An empirical, hierarchical typology of tree species assemblages for assessing forest dynamics under global change scenarios
Cited by: 10
Author(s): Jennifer K. Costanza, John W. Coulston, David N. Wear
Software Mentions: 4
Published: about 9 years ago

10.1038/s41598-019-41287-x

Dry season habitat use of fishes in an Australian tropical river
Cited by: 13
Author(s): Krystle Keller, Quentin Allsop, Jayne Brim Box, Duncan J. Buckle, David A. Crook, Michael M. Douglas, Sue Jackson, Mark J. Kennard, Osmar J. Luiz, Bradley James Pusey, Simon A. Townsend, Alison J. King
Software Mentions: 4
Published: over 7 years ago

10.1111/gcb.15091

Disentangling the effects of plant species invasion and urban development on arthropod community composition
Cited by: 14
Author(s): Wendy Jesse, Jasper Molleman, Oscar Franken, Mark Lammers, Matty P. Berg, Jocelyn E. Behm, Matthew R. Helmus, Jacintha Ellers
Software Mentions: 4
Published: over 6 years ago

10.1186/s13071-021-04859-3

Blastocystis in the faeces of children from six distant countries: prevalence, quantity, subtypes and the relation to the gut bacteriome
Cited by: 11
Author(s): Ondřej Cinek, Katerina Polackova, Rasha Odeh, Abeer Alassaf, Lenka Kramná, Mary Ann Ugochi Ibekwe, Edna Majaliwa, Gunduz Ahmadov, Bashir Mukhtar Elwasila Elmahi, Hanan Mekki, Sami Oikarinen, Jan Lebl, Mohammed A. Abdullah
Software Mentions: 4
Published: about 5 years ago

10.1128/mSystems.00332-18

A Metagenomic Meta-analysis Reveals Functional Signatures of Health and Disease in the Human Gut Microbiome
Cited by: 110
Author(s): Courtney R. Armour, Stephen Nayfach, Katherine S. Pollard, Thomas J. Sharpton
Software Mentions: 4
Published: about 7 years ago

10.7717/peerj.9367

Integrating population genetic structure, microbiome, and pathogens presence data in <i>Dermacentor variabilis</i>
Cited by: 7
Author(s): Paula Lado, Bo Liu, Michelle E. J. Allerdice, Christopher D. Paddock, Sandor E. Karpathy, Hans Klompen
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2018.00809

Conditionally Rare Taxa Contribute but Do Not Account for Changes in Soil Prokaryotic Community Structure
Cited by: 12
Author(s): Rachel Kaminsky, Sergio E. Morales
Software Mentions: 4
Published: over 8 years ago

10.1007/s00248-020-01576-9

Biodiversity Loss Threatens the Current Functional Similarity of Beta Diversity in Benthic Diatom Communities
Cited by: 8
Author(s): Leena Virta, Janne Soininen, Alf Norkko
Software Mentions: 4
Published: about 6 years ago

10.7717/peerj.9821

Assessing the responses of <i>Sphagnum</i> micro-eukaryotes to climate changes using high throughput sequencing
Cited by: 10
Author(s): Monika Reczuga, Christophe V. W. Seppey, Matthieu Mulot, Vincent E. J. Jassey, Alexandre Buttler, Sandra Słowińska, Michael Słowiński, Enrique Lara, Mariusz Lamentowicz, Edward A. D. Mitchell
Software Mentions: 4
Published: almost 6 years ago

10.1002/ece3.2748

A parasite's modification of host behavior reduces predation on its host
Cited by: 17
Author(s): John Soghigian, Linda R. Valsdottir, Todd P. Livdahl
Software Mentions: 4
Published: over 9 years ago

10.1038/s41598-021-83153-9

Insufficient sampling constrains our characterization of plant microbiomes
Cited by: 11
Author(s): Lorinda Bullington, Ylva Lekberg, Beau Larkin
Software Mentions: 4
Published: over 5 years ago

10.1186/s13568-020-01119-y

Dissimilarity of microbial diversity of pond water, shrimp intestine and sediment in Aquamimicry system
Cited by: 23
Author(s): Shenzheng Zeng, Sukontorn Khoruamkid, Warinphorn Kongpakdee, Dongdong Wei, Lingfei Yu, Hao Wang, Zhao‐Peng Deng, Shaoping Weng, Zhijian Huang, Jianguo He, Kriengkrai Satapornvanit
Software Mentions: 4
Published: almost 6 years ago

10.3390/microorganisms9030549

Lake Ecosystem Robustness and Resilience Inferred from a Climate-Stressed Protistan Plankton Network
Cited by: 16
Author(s): Dominik Forster, Zhishuai Qu, Gianna Pitsch, Estelle P. Bruni, Barbara Kammerlander, Thomas Pröschold, Bettina Sonntag, Thomas Posch, Thorsten Stoeck
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-41804-y

Assessment of functional and structural changes of soil fungal and oomycete communities in holm oak declined dehesas through metabarcoding analysis
Cited by: 56
Author(s): Francisco J. Ruiz Gómez, Rafael M. Navarro-Cerrillo, Alejandro Pérez‐de‐Luque, W. Oβwald, Andrea Vannini, Carmen Morales‐Rodríguez
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2019.00170

Electroactive Bacteria Associated With Stainless Steel Ennoblement in Seawater
Cited by: 18
Author(s): Florian Trigodet, Nicolas Larché, Hilary G. Morrison, Mohamed Jebbar, Dominique Thierry, Loïs Maignien
Software Mentions: 4
Published: over 7 years ago

10.3390/ani11092682

Social Behaviour in Zoo Bachelor Groups: A Case Study of Related South American Fur Seals
Cited by: 0
Author(s): Christa Emmett, Mathilda Digby, J. H. Pope, Ellen Williams
Software Mentions: 4
Published: about 5 years ago

10.1093/femsec/fiaa128

The bacterioplankton community composition and a host genotype dependent occurrence of taxa shape the Daphnia magna gut bacterial community
Cited by: 25
Author(s): Martijn Callens, Luc De Meester, Koenraad Muylaert, Shinjini Mukherjee, Ellen Decaestecker
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2020.01491

Thinning Partially Mitigates the Impact of Atlantic Forest Replacement by Pine Monocultures on the Soil Microbiome
Cited by: 13
Author(s): Carolina Paola Trentini, Paula I. Campanello, Mariana Villagra, Julian A. Ferreras, Martin Hartmann
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2020.01979

Genomic Comparison and Spatial Distribution of Different Synechococcus Phylotypes in the Black Sea
Cited by: 11
Author(s): Andrea Di Cesare, Nina Dzhembekova, Pedro J. Cabello‐Yeves, Ester M. Eckert, Violeta Slabakova, Nataliya Slabakova, Elisaveta Peneva, Roberto Bertoni, Gianluca Corno, Michaela M. Salcher, Lyudmila Kamburska, Filippo Bertoni, Francisco Rodrı́guez-Valera, Snejana Moncheva, Cristiana Callieri
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2021.610823

The Structure of Rhizosphere Fungal Communities of Wild and Domesticated Rice: Changes in Diversity and Co-occurrence Patterns
Cited by: 23
Author(s): Jingjing Chang, Yu Sun, Lei Tian, Ji Li, Shasha Luo, Fahad Nasir, Eiko E. Kuramae, Chunjie Tian
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms9010005

Effects of Thermal Stress on the Gut Microbiome of Juvenile Milkfish (Chanos chanos)
Cited by: 24
Author(s): Christiane Hassenrück, Hannes Reinwald, Andreas Kunzmann, Inken Tiedemann, Astrid Gärdes
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0217306

Molecular analysis of the endobronchial stent microbial biofilm reveals bacterial communities that associate with stent material and frequent fungal constituents
Cited by: 13
Author(s): John E. McGinniss, Ize Imai, Áurea Simón-Soro, Melanie C. Brown, Vincent R. Knecht, Laura Frye, Priyanka M. Ravindran, Marisol I. Dothard, Dylan A. Wadell, Michael B. Sohn, Hongzhe Li, Jason D. Christie, Joshua M. Diamond, Andrew R. Haas, Anthony R. Lanfranco, David M. DiBardino, Frederic D. Bushman, Ronald G. Collman
Software Mentions: 4
Published: over 7 years ago

10.7717/peerj.9139

Drivers of beta diversity in modern and ancient reef-associated soft-bottom environments
Cited by: 5
Author(s): Vanessa Julie Roden, Martin Zuschin, Alexander Nützel, Imelda M. Hausmann, Wolfgang Kiessling
Software Mentions: 4
Published: over 6 years ago

10.1002/ece3.4842

Studying the microbiota of bats: Accuracy of direct and indirect samplings
Cited by: 9
Author(s): Muriel Dietrich, Wanda Markotter
Software Mentions: 4
Published: over 7 years ago

10.1186/s12898-014-0026-4

Dissecting the multi-scale spatial relationship of earthworm assemblages with soil environmental variability
Cited by: 21
Author(s): Juan J. Jiménez, Thibaud Decaëns, Patrick Lavelle, Jean‐Pierre Rossi
Software Mentions: 4
Published: almost 12 years ago

10.1371/journal.pone.0170137

Opportunities for Integrated Ecological Analysis across Inland Australia with Standardised Data from Ausplots Rangelands
Cited by: 25
Author(s): Greg R. Guerin, Ben Sparrow, Andrew Tokmakoff, Anita K. Smyth, Emrys Leitch, Zdravko Baruch, Andrew J. Lowe
Software Mentions: 4
Published: over 9 years ago

10.1002/ece3.4057

Applying ecological site concepts and state-and-transition models to a grazed riparian rangeland
Cited by: 6
Author(s): Felix Ratcliff, James W. Bartolome, Luke Macaulay, Sheri Spiegal, Michael D. White
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0209025

Change in fish functional diversity and assembly rules in the course of tidal marsh restoration
Cited by: 11
Author(s): Alain Lechêne, Jérémy Lobry, Philippe Boët, Pascal Laffaille
Software Mentions: 4
Published: over 7 years ago

10.1038/srep45840

Microbial Biogeography and Core Microbiota of the Rat Digestive Tract
Cited by: 105
Author(s): Dongyao Li, Haiqin Chen, Bingyong Mao, Qin Yang, Jianxin Zhao, Zhennan Gu, Hao Zhang, Yong Q. Chen, Wei Chen
Software Mentions: 4
Published: over 9 years ago

10.1002/lno.11742

Amino acid <scp> δ ¹³ C </scp> and <scp> δ ¹⁵ N </scp> analyses reveal distinct species‐specific patterns of trophic plasticity in a marine symbiosis
Cited by: 14
Author(s): Christopher B. Wall, Natalie J. Wallsgrove, Ruth D. Gates, Brian N. Popp
Software Mentions: 4
Published: over 5 years ago

10.1016/j.watres.2019.06.075

Spatial ecology of a wastewater network defines the antibiotic resistance genes in downstream receiving waters
Cited by: 93
Author(s): Marcos Quintela-Baluja, Mohamed Abouelnaga, Jesús L. Romalde, Jian‐Qiang Su, Yongjie Yu, Mariano Gomez-Lopez, Barth F. Smets, Yong‐Guan Zhu, David W. Graham
Software Mentions: 4
Published: almost 7 years ago

10.3390/ani10040577

Improvement of Cecal Commensal Microbiome Following the Insect Additive into Chicken Diet
Cited by: 30
Author(s): Agata Józefiak, Abdelbasset Benzertiha, Bartosz Kierończyk, Anna Łukomska, Izabela Wesołowska, Mateusz Rawski
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2017.01808

Gene Expression Analysis of Zobellia galactanivorans during the Degradation of Algal Polysaccharides Reveals both Substrate-Specific and Shared Transcriptome-Wide Responses
Cited by: 36
Author(s): François Thomas, Philippe Bordron, Damien Eveillard, Gurvan Michel
Software Mentions: 4
Published: almost 9 years ago

10.3389/fmicb.2019.01040

Methanethiol and Dimethylsulfide Cycling in Stiffkey Saltmarsh
Cited by: 15
Author(s): Ornella Carrión, Jennifer Pratscher, Richa Kumari, Wayne G. Rostant, Muhammad Farhan Ul Haque, J. Colin Murrell, Jonathan D. Todd
Software Mentions: 4
Published: over 7 years ago

10.1186/s13568-021-01250-4

Diversity and metagenome analysis of a hydrocarbon-degrading bacterial consortium from asphalt lakes located in Wietze, Germany
Cited by: 17
Author(s): Michael O. Eze, Grant C. Hose, Simon C. George, Rolf Daniel
Software Mentions: 4
Published: over 5 years ago

10.3390/cancers12040825

Pan-Cancer Analysis of Mitochondria Chaperone-Client Co-Expression Reveals Chaperone Functional Partitioning
Cited by: 8
Author(s): Geut Galai, Hila Ben-David, Liron Levin, Martin F. Orth, Thomas Grünewald, Shai Pilosof, Shimon Berstein, Barak Rotblat
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2016.00685

Concentration of Petroleum-Hydrocarbon Contamination Shapes Fungal Endophytic Community Structure in Plant Roots
Cited by: 20
Author(s): Guillaume Bourdel, Alice Roy‐Bolduc, Marc St‐Arnaud, Mohamed Hijri
Software Mentions: 4
Published: over 10 years ago

10.1111/1462-2920.13463

Pediatric obesity is associated with an altered gut microbiota and discordant shifts in <scp><i>F</i></scp><i>irmicutes</i> populations
Cited by: 286
Author(s): Alessandra Riva, Francesca Borgo, Carlotta Lassandro, Elvira Verduci, Giulia Morace, Elisa Borghi, David Berry
Software Mentions: 4
Published: about 10 years ago

10.1038/s41598-019-41542-1

Thickness determines microbial community structure and function in nitrifying biofilms via deterministic assembly
Cited by: 66
Author(s): Carolina Suarez, Maria Piculell, Oskar Modin, Silke Langenheder, Frank Persson, Malte Hermansson
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-020-80444-5

A glimpse of antimicrobial resistance gene diversity in kefir and yoghurt
Cited by: 23
Author(s): Adrienn Tóth, István Csabai, Gergely Maróti, Ákos Jerzsele, Attila Dubecz, Árpád V. Patai, Maura Fiona Judge, Sára Ágnes Nagy, László Makrai, Krisztián Bànyai, G. Szita, Norbert Solymosi
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2017.02550

The Biogeographical Distribution of Benthic Roseobacter Group Members along a Pacific Transect Is Structured by Nutrient Availability within the Sediments and Primary Production in Different Oceanic Provinces
Cited by: 20
Author(s): Marion Pohlner, Julius Degenhardt, Avril Jean Elisabeth von Hoyningen-Huene, Bernd Wemheuer, Nora Erlmann, Bernhard Schnetger, Thomas H. Badewien, Bert Engelen
Software Mentions: 4
Published: over 8 years ago

10.1111/eva.12555

Focusing the diversity of<i>Gardnerella vaginalis</i>through the lens of ecotypes
Cited by: 33
Author(s): Omar E. Cornejo, Roxana J. Hickey, Haruo Suzuki, Larry J. Forney
Software Mentions: 4
Published: almost 9 years ago

10.1186/s13068-018-1164-2

Defining functional diversity for lignocellulose degradation in a microbial community using multi-omics studies
Cited by: 40
Author(s): Anna Alessi, Susannah Bird, Nicola C. Oates, Yang Li, Adam Dowle, E. H. Novotny, Eduardo R. deAzevedo, Joseph P. Bennett, Igor Polikarpov, J. Peter W. Young, Simon J. McQueen‐Mason, Neil C. Bruce
Software Mentions: 4
Published: over 8 years ago

10.1002/ece3.4276

Local trampling disturbance effects on alpine plant populations and communities: Negative implications for climate change vulnerability
Cited by: 14
Author(s): Nathalie Isabelle Chardon, Sonja Wipf, Christian Rixen, Annabarbara Beilstein, Daniel F. Doak
Software Mentions: 4
Published: about 8 years ago

10.3390/ijerph18010030

Crop Diversity at the Landscape Level Affects the Composition and Structure of the Vegetation-Dwelling Arthropod Communities in Naked Oat (Avena Chinensis) Fields
Cited by: 7
Author(s): Huan Zhao, Jiahuan Li, Lizhu Guo, Kun Wang
Software Mentions: 4
Published: over 5 years ago

10.3390/genes10030233

The Patchy Distribution of Restriction–Modification System Genes and the Conservation of Orphan Methyltransferases in Halobacteria
Cited by: 26
Author(s): Matthew S. Fullmer, Matthew Ouellette, Artemis S. Louyakis, R. Thane Papke, J. Peter Gogarten
Software Mentions: 4
Published: over 7 years ago