cran: vegan | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0184515

Unraveling the human salivary microbiome diversity in Indian populations
Cited by: 19
Author(s): Anujit Sarkar, Mark Stoneking, Madhusudan R. Nandineni
Software Mentions: 5
Published: about 9 years ago

10.1038/s41598-018-28720-3

16S rRNA sequencing reveals likely beneficial core microbes within faecal samples of the EU protected slug Geomalacus maculosus
Cited by: 9
Author(s): Inga Reich, Umer Zeeshan Ijaz, Michael J. Gormally, Cindy J. Smith
Software Mentions: 5
Published: about 8 years ago

10.7717/peerj.1900

A comparison of species composition and community assemblage of secondary forests between the birch and pine-oak belts in the mid-altitude zone of the Qinling Mountains, China
Cited by: 13
Author(s): Zongzheng Chai, Dexiang Wang
Software Mentions: 5
Published: over 10 years ago

10.1007/s00227-018-3411-2

Interactive effects of herbivory and substrate orientation on algal community dynamics on a coral reef
Cited by: 19
Author(s): Alain Durán, Ligia Collado‐Vides, L. Palma, Deron E. Burkepile
Software Mentions: 5
Published: about 8 years ago

10.7717/peerj.6481

Mat thickness associated withDidymosphenia geminataandCymbellaspp. in the southern rivers of Chile
Cited by: 1
Author(s): Daniel Zamorano, Matías Peredo-Parada, Diana J. Lillo, Jorge Parodí, Carolina A. Díaz
Software Mentions: 5
Published: over 7 years ago

10.3389/fmicb.2016.00374

Methane Seep in Shallow-Water Permeable Sediment Harbors High Diversity of Anaerobic Methanotrophic Communities, Elba, Italy
Cited by: 34
Author(s): S. Emil Ruff, Hanna Kuhfuß, Gunter Wegener, Christian Lott, Alban Ramette, Johanna Wiedling, Katrin Knittel, Miriam Weber
Software Mentions: 5
Published: over 10 years ago

10.1038/s41598-018-26484-4

Network-guided genomic and metagenomic analysis of the faecal microbiota of the critically endangered kakapo
Cited by: 11
Author(s): David W. Waite, Melissa Dsouza, Yuji Sekiguchi, Philip Hugenholtz, Michael W. Taylor
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-018-28796-x

Differences between microhabitat and broad-scale patterns of niche evolution in terrestrial salamanders
Cited by: 47
Author(s): Gentile Francesco Ficetola, Enrico Lunghi, Claudia Canedoli, Emilio Padoa‐Schioppa, Roberta Pennati, Raoul Manenti
Software Mentions: 5
Published: about 8 years ago

10.1038/s41396-020-00735-7

Composition and activity of nitrifier communities in soil are unresponsive to elevated temperature and CO2, but strongly affected by drought
Cited by: 35
Author(s): Joana Séneca, Petra Pjevac, Alberto Canarini, Craig W. Herbold, Christos Zioutis, Marlies Dietrich, Eva Simon, Judith Prommer, Michael Bahn, E. M. Pötsch, Michael Wagner, Wolfgang Wanek, Andreas Richter
Software Mentions: 5
Published: about 6 years ago

10.3389/fbioe.2020.604838

Response of Microbial Community to Induced Failure of Anaerobic Digesters Through Overloading With Propionic Acid Followed by Process Recovery
Cited by: 15
Author(s): Azin Khafipour, Elsie M. Jordaan, Daniel Flores-Orozco, Ehsan Khafipour, David B. Levin, Richard Sparling
Software Mentions: 5
Published: almost 6 years ago

10.3389/fmicb.2019.02883

Diversity-Stability Dynamics of the Amphibian Skin Microbiome and Susceptibility to a Lethal Viral Pathogen
Cited by: 37
Author(s): Xavier A. Harrison, Stephen J. Price, Kevin Hopkins, William T. M. Leung, Chris Sergeant, Trenton W. J. Garner
Software Mentions: 5
Published: over 6 years ago

10.3390/foods9091247

Application of a High-Throughput Amplicon Sequencing Method to Chart the Bacterial Communities that Are Associated with European Fermented Meats from Different Origins
Cited by: 14
Author(s): Emiel Van Reckem, Christina Charmpi, David Van der Veken, Wim Borremans, Luc De Vuyst, Stefan Weckx, Frédéric Leroy
Software Mentions: 5
Published: about 6 years ago

10.1186/s40168-019-0696-4

Antibiotic treatment in feedlot cattle: a longitudinal study of the effect of oxytetracycline and tulathromycin on the fecal and nasopharyngeal microbiota
Cited by: 57
Author(s): Devin B. Holman, Wenzhu Yang, Trevor W. Alexander
Software Mentions: 5
Published: over 7 years ago

10.3390/foods9101386

The Use of Less Conventional Meats or Meat with High pH Can Lead to the Growth of Undesirable Microorganisms during Natural Meat Fermentation
Cited by: 13
Author(s): Christina Charmpi, Emiel Niels Van Reckem, Nikoleta Sameli, David Van der Veken, Luc De Vuyst, Frédéric Leroy
Software Mentions: 5
Published: almost 6 years ago

10.1038/sdata.2019.7

The effect of 16S rRNA region choice on bacterial community metabarcoding results
Cited by: 222
Author(s): Yu. S. Bukin, Yuri P. Galachyants, И. В. Морозов, S. V. Bukin, А. S. Zakharenko, Т. I. Zemskaya
Software Mentions: 5
Published: over 7 years ago

10.1038/sdata.2019.8

A metagenomic survey of soil microbial communities along a rehabilitation chronosequence after iron ore mining
Cited by: 33
Author(s): Markus Gastauer, Mabel Patricia Ortiz Vera, Kleber Padovani de Souza, Eder S. Pires, Ronnie Alves, Cecílio Fróis Caldeira, Sílvio Júnio Ramos, Guilherme Oliveira
Software Mentions: 5
Published: over 7 years ago

10.1002/ece3.4197

Impact of human disturbance on bee pollinator communities in savanna and agricultural sites in Burkina Faso, West Africa
Cited by: 24
Author(s): Katharina Stein, Kathrin Stenchly, Daouda Coulibaly, Alain Pauly, Kangbéni Dimobe, Ingolf Steffan‐Dewenter, Souleymane Konaté, Dethardt Goetze, Stefan Porembski, K. Eduard Linsenmair
Software Mentions: 5
Published: over 8 years ago

10.1126/sciadv.aau4578

Fungal diversity regulates plant-soil feedbacks in temperate grassland
Cited by: 134
Author(s): Marina Semchenko, Jonathan W. Leff, Yudi M. Lozano, Sirgi Saar, John Davison, Anna Wilkinson, Benjamin G. Jackson, William J. Pritchard, Jonathan R. De Long, Simon Oakley, Kelly E. Mason, Nicholas J. Ostle, Elizabeth M. Baggs, David Johnson, Noah Fierer, Richard D. Bardgett
Software Mentions: 5
Published: almost 8 years ago

10.7717/peerj.7014

Soil bacterial and fungal communities of six bahiagrass cultivars
Cited by: 10
Author(s): Lukas Beule, Ko‐Hsuan Chen, Chih‐Ming Hsu, Cheryl L. Mackowiak, José C. B. Dubeux, Ann R. Blount, Hui‐Ling Liao
Software Mentions: 5
Published: over 7 years ago

10.1126/sciadv.abb6376

Nonlinear landscape and cultural response to sea-level rise
Cited by: 9
Author(s): Robert L. Barnett, Dan Charman, C. H. W. Johns, Sophie L. Ward, Andrew Bevan, Sarah Bradley, Kevin Camidge, Ralph Fyfe, W. Roland Gehrels, Maria J. Gehrels, Jackie Hatton, Nicole S. Khan, P. Marshall, S. Yoshi Maezumi, Stephen Mills, Jacqui Mulville, Manuel Rodríguez Pérez, Helen M. Roberts, James Scourse, Francis Shepherd, Todd O. Stevens
Software Mentions: 5
Published: almost 6 years ago

10.1111/1462-2920.15484

Effect of salinity on cable bacteria species composition and diversity
Cited by: 19
Author(s): Ann‐Sofie Dam, Ian P. G. Marshall, Nils Risgaard‐Petersen, Laurine D. W. Burdorf, Ugo Marzocchi
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.8809

The impact of diel vertical migration on fatty acid patterns and allocation inDaphnia magna
Cited by: 4
Author(s): Meike Anika Hahn, Eric von Elert
Software Mentions: 5
Published: over 6 years ago

10.1111/1462-2920.14498

Gut microbiota in patients after surgical treatment for colorectal cancer
Cited by: 21
Author(s): Ye Jin, Yang Liu, Lei Zhao, Fuya Zhao, Jing Feng, Shengda Li, Huinan Chen, Jiayu Sun, Bihai Zhu, Rui Geng, Yunwei Wei
Software Mentions: 5
Published: over 7 years ago

10.3390/brainsci11081085

Maternal Immune Activation Causes Social Behavior Deficits and Hypomyelination in Male Rat Offspring with an Autism-Like Microbiota Profile
Cited by: 29
Author(s): Gilbert Lee, Yen Kuang Lin, Jing Lai, Yu Chun Lo, Yu Yang, Syuan You Ye, Chia-Jung Lee, Ching Chiung Wang, Yung Hsiao Chiang, Sung Hui Tseng
Software Mentions: 5
Published: about 5 years ago

10.7717/peerj.9777

Generalized Linear Models outperform commonly used canonical analysis in estimating spatial structure of presence/absence data
Cited by: 4
Author(s): Lélis Antonio Carlos-Júnior, Joel Christopher Creed, Rob H. Marrs, Rob J. Lewis, Timothy P. Moulton, Rafael Feijó‐Lima, Matthew Spencer
Software Mentions: 5
Published: about 6 years ago

10.7717/peerj.9644

Microbiome dynamics in the tissue and mucus of acroporid corals differ in relation to host and environmental parameters
Cited by: 26
Author(s): Giulia M. Marchioro, Bettina Glasl, Aschwin H. Engelen, Ester Á. Serrão, David G. Bourne, Nicole S. Webster, Pedro R. Frade
Software Mentions: 5
Published: about 6 years ago

10.1186/s42523-021-00104-5

Vertically transmitted microbiome protects eggs from fungal infection and egg failure
Cited by: 13
Author(s): Marie Bunker, Greg Elliott, H. Heyer-Gray, Michael R. Martin, A. Elizabeth Arnold, Stacey L. Weiss
Software Mentions: 5
Published: over 5 years ago

10.1007/s00213-019-05218-y

Microbe and host interaction in gastrointestinal homeostasis
Cited by: 18
Author(s): Rachael Horne, James St. Pierre, Sufian Odeh, Michael G. Surette, Jane A. Foster
Software Mentions: 5
Published: over 7 years ago

10.1098/rsos.170057

Absence of population structure across elevational gradients despite large phenotypic variation in mountain chickadees (Poecile gambeli)
Cited by: 20
Author(s): Carrie L. Branch, Joshua P. Jahner, Dovid Y. Kozlovsky, Thomas L. Parchman, Vladimir V. Pravosudov
Software Mentions: 5
Published: over 9 years ago

10.1038/s41426-018-0202-2

Altered gut microbiota after traumatic splenectomy is associated with endotoxemia
Cited by: 15
Author(s): Hua Zhu, Yang Liu, Shengda Li, Ye Jin, Lei Zhao, Fuya Zhao, Jing Feng, Yan Wang, Yunwei Wei
Software Mentions: 5
Published: almost 8 years ago

10.1111/ele.13082

Linking phytoplankton community metabolism to the individual size distribution
Cited by: 20
Author(s): Daniel Padfield, Angus Buckling, Ruth Warfield, Chris D. Lowe, Gabriel Yvon‐Durocher
Software Mentions: 5
Published: over 8 years ago

10.1002/ecy.3201

Negative effects of an allelopathic invader on AM fungal plant species drive community‐level responses
Cited by: 14
Author(s): Morgan D. Roche, Ian S. Pearse, Lalasia Bialic‐Murphy, Stephanie N. Kivlin, Helen R. Sofaer, Susan Kalisz
Software Mentions: 5
Published: almost 6 years ago

10.1098/rsos.180041

Synchronized shift of oral, faecal and urinary microbiotas in bats and natural infection dynamics during seasonal reproduction
Cited by: 25
Author(s): Muriel Dietrich, Teresa Kearney, Ernest C.J. Seamark, Janusz T. Pawęska, Wanda Markotter
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0156781

Breeding Guild Determines Frog Distributions in Response to Edge Effects and Habitat Conversion in the Brazil’s Atlantic Forest
Cited by: 22
Author(s): Rodrigo Barbosa Ferreira, Karen H. Beard, Martha L. Crump
Software Mentions: 5
Published: over 10 years ago

10.1111/ele.13497

Plant community composition steers grassland vegetation via soil legacy effects
Cited by: 68
Author(s): Robin Heinen, S. Emilia Hannula, Jonathan R. De Long, Martine Huberty, Renske Jongen, Anna M. Kielak, Katja Steinauer, Feng Zhu, T. Martijn Bezemer
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0183906

Flat and complex temperate reefs provide similar support for fish: Evidence for a unimodal species-habitat relationship
Cited by: 39
Author(s): Avery B. Paxton, Emily A. Pickering, Alyssa M. Adler, James C. Taylor, Charles H. Peterson
Software Mentions: 5
Published: about 9 years ago

10.7717/peerj.4606

Can phosphorus application and cover cropping alter arbuscular mycorrhizal fungal communities and soybean performance after a five-year phosphorus-unfertilized crop rotational system?
Cited by: 21
Author(s): Masao Higo, Ryohei Sato, Ayu Serizawa, Yuichi Takahashi, Kento Gunji, Yuya Tatewaki, Katsunori Isobe
Software Mentions: 5
Published: over 8 years ago

10.1186/s13068-016-0652-5

Presence does not imply activity: DNA and RNA patterns differ in response to salt perturbation in anaerobic digestion
Cited by: 56
Author(s): Jo De Vrieze, Leticia Regueiro, Ruben Props, Ramiro Vílchez-Vargas, Ruy Jáuregui, Dietmar H. Pieper, Juan M. Lema, Marta Carballa
Software Mentions: 5
Published: almost 10 years ago

10.1002/ece3.4355

Genetically determined fungal pathogen tolerance and soil variation influence ectomycorrhizal traits of loblolly pine
Cited by: 8
Author(s): Bridget J. Piculell, Lori G. Eckhardt, Jason D. Hoeksema
Software Mentions: 5
Published: about 8 years ago

10.3389/fcimb.2021.637018

Identification of Microbiome Etiology Associated With Drug Resistance in Pleural Empyema
Cited by: 12
Author(s): Zhaoyan Chen, Hang Cheng, Zhao Cai, Qingjun Wei, Jinlong Li, Jing Liang, Wenshu Zhang, Zhijian Yu, Dongjing Liu, Lei Liu, Zhenqiang Zhang, Ke Wang, Liang Yang
Software Mentions: 5
Published: over 5 years ago

10.1098/rspb.2019.3000

Hippopotamus are distinct from domestic livestock in their resource subsidies to and effects on aquatic ecosystems
Cited by: 18
Author(s): Frank O. Masese, Mary J. Kiplagat, Clara Romero González‐Quijano, Amanda L. Subalusky, Christopher L. Dutton, David M. Post, Gabriel Singer
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.3098

Metagenomic analysis exploring taxonomic and functional diversity of soil microbial communities in Chilean vineyards and surrounding native forests
Cited by: 107
Author(s): Luis E. Castañeda, Olga Barbosa
Software Mentions: 5
Published: over 9 years ago

10.1098/rsos.190040

Functional implications of dentition-based morphotypes in piscivorous fishes
Cited by: 26
Author(s): Michalis Mihalitsis, David R. Bellwood
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pone.0180007

Diversity of fruit-feeding butterflies in a mountaintop archipelago of rainforest
Cited by: 18
Author(s): Geanne Carla Novais Pereira, Marcel Serra Coelho, Marina do Vale Beirão, Rodrigo Fagundes Braga, Geraldo Wilson Fernandes
Software Mentions: 5
Published: about 9 years ago

10.1371/journal.ppat.1009769

Virulence and community dynamics of fungal species with vertical and horizontal transmission on a plant with multiple infections
Cited by: 11
Author(s): Kai Fang, Jie Zhou, Lin Chen, Yuxuan Li, Ai-Ling Yang, Xing-Fan Dong, Hanbo Zhang
Software Mentions: 5
Published: about 5 years ago

10.7717/peerj.8317

Alteration of the gut microbiota associated with childhood obesity by 16S rRNA gene sequencing
Cited by: 65
Author(s): Xiaowei Chen, Haixiang Sun, Fei Jiang, Yan Shen, Xin Li, HU Xue-ju, Xiao-Min Shen, Pingmin Wei
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.11012

Changes in diversity and community assembly of jumping spiders (Araneae: Salticidae) after rainforest conversion to rubber and oil palm plantations
Cited by: 13
Author(s): André Junggebauer, Tamara R. Hartke, Daniel Ramos, Ina Schaefer, Damayanti Buchori, Purnama Hidayat, Stefan Scheu, Jochen Drescher
Software Mentions: 5
Published: over 5 years ago

10.1002/ece3.6094

Neighboring trees regulate the root‐associated pathogenic fungi on the host plant in a subtropical forest
Cited by: 6
Author(s): Ke-Ke Cheng, Shixiao Yu
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2017.01120

The Arbuscular Mycorrhizal Fungus Funneliformis mosseae Alters Bacterial Communities in Subtropical Forest Soils during Litter Decomposition
Cited by: 31
Author(s): Heng Gui, Witoon Purahong, Kevin D. Hyde, Jianchu Xu, Peter E. Mortimer
Software Mentions: 5
Published: about 9 years ago

10.3390/microorganisms8071032

Structures of the Skin Microbiome and Mycobiome Depending on Skin Sensitivity
Cited by: 10
Author(s): Hye Lim Keum, Hanbyul Kim, Hye-Jin Kim, Taehun Park, Seoyung Kim, Shi An, Woo Jun Sul
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0236165

Diversity and structure of soil microbiota of the Jinsha earthen relic
Cited by: 4
Author(s): Sheng Yang, Linfeng Wu, Bin Wu, Yizheng Zhang, Haiyan Wang, Xuemei Tan
Software Mentions: 5
Published: about 6 years ago

10.1111/jeb.12591

Parallel chemical switches underlying pollinator isolation in <scp>A</scp> sian <scp>M</scp> itella 
Cited by: 33
Author(s): Tomoko Okamoto, Yudai Okuyama, Ryozo Gotô, Masahiko Tokoro, Makoto Katô
Software Mentions: 5
Published: over 11 years ago

10.1002/ece3.5449

Conversion of rainforest to oil palm and rubber plantations alters energy channels in soil food webs
Cited by: 21
Author(s): Winda Ika Susanti, Melanie M. Pollierer, Rahayu Widyastuti, Stefan Scheu, Anton Potapov
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.ppat.1007926

Trickle infection and immunity to Trichuris muris
Cited by: 33
Author(s): Maya Glover, Stefano A. P. Colombo, David J. Thornton, Richard K. Grencis
Software Mentions: 5
Published: almost 7 years ago

10.3389/fmicb.2019.00256

Soil Macroinvertebrate Presence Alters Microbial Community Composition and Activity in the Rhizosphere
Cited by: 25
Author(s): Natalie Bray, Jenny Kao‐Kniffin, Serita D. Frey, Timothy J. Fahey, Kyle Wickings
Software Mentions: 5
Published: over 7 years ago

10.1111/jbi.13746

Drivers of bromeliad leaf and floral bract variation across a latitudinal gradient in the Atlantic Forest
Cited by: 4
Author(s): Beatriz Neves, Camila Martini Zanella, Igor Musauer Kessous, Fernando Pérez Uribbe, Fabiano Salgueiro, Fernanda Bered, Alexandre Antonelli, Christine D. Bacon, Andrea Costa
Software Mentions: 5
Published: almost 7 years ago

10.3389/fmicb.2019.02902

Exploring Soil Factors Determining Composition and Structure of the Bacterial Communities in Saline-Alkali Soils of Songnen Plain
Cited by: 42
Author(s): Shuang Wang, Lei Sun, Ning Ling, Chen Zhu, Fengqin Chi, Weiqun Li, Xiaoyu Hao, Wu Zhang, Jingyang Bian, Lei Chen, Dan Wei
Software Mentions: 5
Published: over 6 years ago

10.3390/microorganisms9071374

The Microbiome Associated with the Reef Builder Neogoniolithon sp. in the Eastern Mediterranean
Cited by: 2
Author(s): Shany Gefen-Treves, Alexander Bartholomäus, Fabian Horn, Adam Boleslaw Zaborowski, Dan Tchernov, Dirk Wagner, Aharon Oren, Aaron Kaplan
Software Mentions: 5
Published: about 5 years ago

10.3390/microorganisms9081711

Microbial Shift in the Enteric Bacteriome of Coral Reef Fish Following Climate-Driven Regime Shifts
Cited by: 6
Author(s): Marie-Charlotte Cheutin, Sébastien Villéger, Christina C. Hicks, James P. W. Robinson, Nicholas A. J. Graham, Clémence Marconnet, Claudia Ximena Ortiz Restrepo, Yvan Bettarel, Thierry Bouvier, Jean‐Christophe Auguet
Software Mentions: 5
Published: about 5 years ago

10.1186/s40168-020-00893-y

Antimicrobial drug use in the first decade of life influences saliva microbiota diversity and composition
Cited by: 16
Author(s): Sajan C. Raju, Heli Viljakainen, Rejane Augusta de Oliveira Figueiredo, Pertti J. Neuvonen, Johan G. Eriksson, Elisabete Weiderpass, Trine B. Rounge
Software Mentions: 5
Published: about 6 years ago

10.3390/microorganisms9020262

Bacterial Diversity and Community Composition Distribution in Cold-Desert Habitats of Qinghai–Tibet Plateau, China
Cited by: 7
Author(s): Wei Zhang, Ali Bahadur, Wasim Sajjad, Gaosen Zhang, Fahad Nasir, Binglin Zhang, Xiukun Wu, Guangxiu Lu, Tuo Chen
Software Mentions: 5
Published: over 5 years ago

10.1186/s12898-020-00326-2

Family matters: skin microbiome reflects the social group and spatial proximity in wild zebra finches
Cited by: 12
Author(s): Kathrin Engel, Helga Pankoke, Sebastian Jünemann, Hanja B. Brandl, Jan Sauer, Simon C. Griffith, Jörn Kalinowski, Barbara A. Caspers
Software Mentions: 5
Published: almost 6 years ago

10.1002/ece3.4086

Canopy bird assemblages are less influenced by habitat age and isolation than understory bird assemblages in Neotropical secondary forest
Cited by: 20
Author(s): Tom Bradfer‐Lawrence, Nick Gardner, Daisy H. Dent
Software Mentions: 5
Published: over 8 years ago

10.1186/s40104-020-00542-2

Linkage between the intestinal microbiota and residual feed intake in broiler chickens
Cited by: 26
Author(s): Jing Liu, Sydney Stewart, Kelsy Robinson, Qing Yang, Wentao Lyu, Melanie A. Whitmore, Guolong Zhang
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2016.00565

Chitin Mixed in Potting Soil Alters Lettuce Growth, the Survival of Zoonotic Bacteria on the Leaves and Associated Rhizosphere Microbiology
Cited by: 59
Author(s): Jane Debode, Caroline De Tender, Saman Soltaninejad, Cinzia Van Malderghem, Annelies Haegeman, Inge Van der Linden, Bart Cottyn, Marc Heyndrickx, Martine Maes
Software Mentions: 5
Published: over 10 years ago

10.3390/biology10030223

Asparagopsis armata Exudate Cocktail: The Quest for the Mechanisms of Toxic Action of an Invasive Seaweed on Marine Invertebrates
Cited by: 7
Author(s): Carla O. Silva, Tiago Simões, Rafael Félix, Amadeu M.V.M. Soares, Carlos Barata, Sara C. Novais, Marco F.L. Lemos
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0232456

Investigation of the human nasal microbiome in persons with long- and short-term exposure to methicillin-resistant Staphylococcus aureus and other bacteria from the pig farm environment
Cited by: 10
Author(s): Zohorul Islam, Thor Bech Johannesen, Berit Lilje, Tinna Ravnholt Urth, Anders Rhod Larsen, Øystein Angen, Jesper Larsen
Software Mentions: 5
Published: over 6 years ago

10.1186/s40168-016-0189-7

Cardiorespiratory fitness as a predictor of intestinal microbial diversity and distinct metagenomic functions
Cited by: 274
Author(s): Mehrbod Estaki, Jason Pither, Peter Baumeister, Jonathan P. Little, S K Gill, Sanjoy Ghosh, Ahmadi-Vand Zahra, Katelyn Marsden, Deanna L. Gibson
Software Mentions: 5
Published: about 10 years ago

10.3390/ani10112020

Vaginal Microbiota Is Stable throughout the Estrous Cycle in Arabian Mares
Cited by: 19
Author(s): Marta Barba, Rebeca Martínez-Boví, J.J. Quereda, M. L. Mocé, María Plaza-Dávila, E. Jiménez-Trigos, Ángel Gómez-Martín, Pedro González-Torres, Belén Carbonetto, E. García-Roselló
Software Mentions: 5
Published: almost 6 years ago

10.3390/microorganisms8010134

Doing More with Less: A Comparison of 16S Hypervariable Regions in Search of Defining the Shrimp Microbiota
Cited by: 34
Author(s): Rodrigo García-López, Fernanda Cornejo‐Granados, Alonso A. López-Zavala, Filiberto Sánchez-López, Andrés Cota-Huízar, Rogerio R. Sotelo‐Mundo, Abraham Guerrero, Alfredo Mendoza-Vargas, Bruno Gómez‐Gil, Adrián Ochoa-Leyva
Software Mentions: 5
Published: over 6 years ago

10.3390/microorganisms8121977

Alteration of Bacterial Communities in Anterior Nares and Skin Sites of Patients Undergoing Arthroplasty Surgery: Analysis by 16S rRNA and Staphylococcal-Specific tuf Gene Sequencing
Cited by: 8
Author(s): Søren Iversen, Thor Bech Johannesen, Anna Cäcilia Ingham, Sofie Marie Edslev, Staffan Tevell, Emeli Månsson, Åsa Nilsdotter-Augustinsson, Bo Söderquist, Marc Stegger, Paal Skytt Andersen
Software Mentions: 5
Published: almost 6 years ago

10.1186/s42523-020-00038-4

Gut eukaryotic communities in pigs: diversity, composition and host genetics contribution
Cited by: 23
Author(s): Yuliaxis Ramayo-Caldas, Francesc X. Prenafeta-Boldú, Laura M. Zingaretti, Olga González‐Rodríguez, Antoni Dalmau, Raquel Quintanilla, María Ballester
Software Mentions: 5
Published: over 6 years ago

10.3390/microorganisms9071470

Changes in Soil Microbial Communities across an Urbanization Gradient: A Local-Scale Temporal Study in the Arid Southwestern USA
Cited by: 7
Author(s): Yongjian Chen, Adalee Martinez, Sydney Cleavenger, Julia Rudolph, Albert Barberán
Software Mentions: 5
Published: about 5 years ago

10.1172/jci.insight.143058

Targeted DNA methylation profiling reveals epigenetic signatures in peanut allergy
Cited by: 26
Author(s): Xiaoying Zhou, Xiaorui Han, Shu‐Chen Lyu, Bryan Bunning, Laurie Kost, Iris Chang, Shu Cao, Vanitha Sampath, Kari Nadeau
Software Mentions: 5
Published: over 5 years ago

10.1186/s40635-021-00398-4

Pulmonary and intestinal microbiota dynamics during Gram-negative pneumonia-derived sepsis
Cited by: 8
Author(s): Nora S. Wolff, Max C. Jacobs, W. Joost Wiersinga, Floor Hugenholtz
Software Mentions: 5
Published: about 5 years ago

10.1172/jci.insight.138772

IL-32γ potentiates tumor immunity in melanoma
Cited by: 19
Author(s): Thomas Gruber, Mirela Kremenovic, Hassan Sadozai, Nives Rombini, Lukas Baeriswyl, Fabienne Maibach, Robert L. Modlin, Michel Gilliet, Diego von Werdt, Robert E. Hunger, S. Morteza Seyed Jafari, Giulia Parisi, Gabriel Abril-Rodríguez, Antoni Ribas, Mirjam Schenk
Software Mentions: 5
Published: about 6 years ago

10.1186/s13062-020-00287-y

Systematic evaluation of supervised machine learning for sample origin prediction using metagenomic sequencing data
Cited by: 11
Author(s): Chih-Yu Chen, Andrea D. Tyler
Software Mentions: 4
Published: almost 6 years ago

10.3390/microorganisms7090341

DNA- and RNA- Derived Fungal Communities in Subsurface Aquifers Only Partly Overlap but React Similarly to Environmental Factors
Cited by: 14
Author(s): Ali Nawaz, Witoon Purahong, Martina Herrmann, Kirsten Küsel, François Buscot, Tesfaye Wubet
Software Mentions: 4
Published: about 7 years ago

10.3390/microorganisms9040816

CaptureSeq: Hybridization-Based Enrichment of cpn60 Gene Fragments Reveals the Community Structures of Synthetic and Natural Microbial Ecosystems
Cited by: 8
Author(s): Matthew G. Links, Tim J. Dumonceaux, Erin McCarthy, Sean M. Hemmingsen, Edward Topp, Jennifer Town
Software Mentions: 4
Published: over 5 years ago

10.1186/1471-2407-8-106

Explorative data analysis of MCL reveals gene expression networks implicated in survival and prognosis supported by explorative CGH analysis
Cited by: 37
Author(s): Steffen Blenk, Julia C. Engelmann, Stefan Pinkert, Markus Weniger, Jörg Schultz, Andreas Rosenwald, Hans Konrad Müller‐Hermelink, Tobias Müller, Thomas Dandekar
Software Mentions: 4
Published: over 18 years ago

10.3390/insects12010011

Olfactory Choice for Decomposition Stage in the Burying Beetle Nicrophorus vespilloides: Preference or Aversion?
Cited by: 4
Author(s): Pablo J. Delclós, Tammy L. Bouldin, Jeffery K. Tomberlin
Software Mentions: 4
Published: over 5 years ago

10.1186/s12885-020-6654-5

Temporal changes in gut microbiota profile in children with acute lymphoblastic leukemia prior to commencement-, during-, and post-cessation of chemotherapy
Cited by: 36
Author(s): Ling Ling Chua, Reena Rajasuriar, Yvonne Ai Lian Lim, Yin Ling Woo, P’ng Loke, Hany Ariffin
Software Mentions: 4
Published: over 6 years ago

10.1186/s42523-020-00051-7

Diet-induced changes in bacterial communities in the jejunum and their associations with bile acids in Angus beef cattle
Cited by: 14
Author(s): Jianan Liu, Fang Liu, Wentao Cai, Caixia Jia, Ying Bai, Yanghua He, Weiyun Zhu, Robert W. Li, Jiuzhou Song
Software Mentions: 4
Published: about 6 years ago

10.3390/microorganisms8010008

Tissue- and Population-Level Microbiome Analysis of the Wasp Spider Argiope bruennichi Identified a Novel Dominant Bacterial Symbiont
Cited by: 22
Author(s): Monica M. Sheffer, Gabriele Uhl, Stefan Prost, Tillmann Lueders, Tim Urich, Mia M. Bengtsson
Software Mentions: 4
Published: over 6 years ago

10.3390/microorganisms7110502

The Human Milk Microbiota is Modulated by Maternal Diet
Cited by: 54
Author(s): Marina Padilha, Niels Banhos Danneskiold‐Samsøe, Asker Brejnrod, Christian Hoffmann, Vanessa Pereira Cabral, Julia de Melo Iaucci, Cristiane Hermes Sales, Regina Mara Fisberg, Ramon V. Cortez, Susanne Brix, Carla Romano Taddei, Karsten Kristiansen, Susana Marta Isay Saad
Software Mentions: 4
Published: almost 7 years ago

10.3390/microorganisms9030476

Grazing Affects Bacterial and Fungal Diversities and Communities in the Rhizosphere and Endosphere Compartments of Leymus chinensis through Regulating Nutrient and Ion Distribution
Cited by: 14
Author(s): Yurong Yang, Siying Chen, Xuefeng Wu, Sajid Iqbal Syed, Irfan Ullah Shah Syed, Beitong Huang, Pingting Guan, Deli Wang
Software Mentions: 4
Published: over 5 years ago

10.1186/s12915-020-00775-7

Parkinson’s disease-associated alterations of the gut microbiome predict disease-relevant changes in metabolic functions
Cited by: 114
Author(s): Federico Baldini, Johannes Hertel, Estelle Sandt, Cyrille C. Thinnes, Lorieza Neuberger-Castillo, Lukas Pavelka, Fay Betsou, Rejko Krüger, Ines Thiele
Software Mentions: 4
Published: over 6 years ago

10.1186/s12915-015-0204-7

Hook tool manufacture in New Caledonian crows: behavioural variation and the influence of raw materials
Cited by: 26
Author(s): Barbara Christina Klump, Shoko Sugasawa, James J. H. St Clair, Christian Rutz
Software Mentions: 4
Published: almost 11 years ago

10.3390/microorganisms9081595

Habitats Are More Important Than Seasons in Shaping Soil Bacterial Communities on the Qinghai-Tibetan Plateau
Cited by: 7
Author(s): Rui Wang, Wei Miao, Jing Wang, Yongjun Lin
Software Mentions: 4
Published: about 5 years ago

10.3390/microorganisms8020190

Keystone Species and Modularity in Microbial Hydrocarbon Degradation Uncovered by Network Analysis and Association Rule Mining
Cited by: 5
Author(s): Florian Centler, Sarah Günnigmann, Ingo Fetzer, Annelie Wendeberg
Software Mentions: 4
Published: over 6 years ago

10.3897/BDJ.5.e13564

Long-term monitoring of diversity and structure of two stands of an Atlantic Tropical Forest
Cited by: 3
Author(s): Écio Souza Diniz, Warley Augusto Caldas Carvalho, Rubens Manoel dos Santos, Markus Gastauer, Paulo Oswaldo Garcia, Marco Aurélio Leite Fontes, Polyanne Aparecida Coelho, Aline Martins Moreira, Gisele Cristina Oliveira Menino, Ary Teixeira de Oliveira‐Filho
Software Mentions: 4
Published: about 9 years ago

10.3390/microorganisms7030072

Urbanization Altered Bacterial and Archaeal Composition in Tidal Freshwater Wetlands Near Washington DC, USA, and Buenos Aires, Argentina
Cited by: 3
Author(s): Martina Gonzalez Mateu, Cedric Evan Park, Cullen Patrick McAskill, Andrew H. Baldwin, Stephanie A. Yarwood
Software Mentions: 4
Published: over 7 years ago

10.1002/ece3.6042

Assessing insect biodiversity with automatic light traps in Brazil: Pearls and pitfalls of metabarcoding samples in preservative ethanol
Cited by: 22
Author(s): Maurício M. Zenker, Alexandre Specht, Vera G. Fonseca
Software Mentions: 4
Published: over 6 years ago

10.1186/s12915-021-01153-7

Skin-penetrating nematodes exhibit life-stage-specific interactions with host-associated and environmental bacteria
Cited by: 4
Author(s): Ivan N Chavez, Taylor M Brown, Adrien Assié, Astra S. Bryant, Buck S. Samuel, Elissa A. Hallem
Software Mentions: 4
Published: almost 5 years ago

10.3390/insects11090645

Diet Breadth Affects Bacterial Identity but Not Diversity in the Pollen Provisions of Closely Related Polylectic and Oligolectic Bees
Cited by: 10
Author(s): Jason A. Rothman, Diana Cox-Foster, Corey J. Andrikopoulos, Quinn S. McFrederick
Software Mentions: 4
Published: almost 6 years ago

10.3390/microorganisms9091876

The Terrestrial Plastisphere: Diversity and Polymer-Colonizing Potential of Plastic-Associated Microbial Communities in Soil
Cited by: 21
Author(s): Joana MacLean, Sathish Mayanna, Liane G. Benning, Fabian Horn, Alexander Bartholomäus, Yosri Wiesner, Dirk Wagner, Susanne Liebner
Software Mentions: 4
Published: about 5 years ago

10.3390/microorganisms9091818

Sulfidogenic Microbial Communities of the Uzen High-Temperature Oil Field in Kazakhstan
Cited by: 10
Author(s): Д. Ш. Соколова, Е. М. Семенова, Denis S. Grouzdev, Salimat K. Bidzhieva, Т. Л. Бабич, Н. Г. Лойко, A. P. Ershov, Vitaly V. Kadnikov, Alexey V. Beletsky, Andrey V. Mardanov, Nurlan S. Zhaparov, Т. Н. Назина
Software Mentions: 4
Published: about 5 years ago

10.3390/microorganisms9020294

Potential Association between Vaginal Microbiota and Cervical Carcinogenesis in Korean Women: A Cohort Study
Cited by: 23
Author(s): Gi-Ung Kang, Da-Ryung Jung, Yoon Hee Lee, Se Young Jeon, Hyung Soo Han, Gun Oh Chong, Jae‐Ho Shin
Software Mentions: 4
Published: over 5 years ago

10.3390/ani11071950

Investigating the Effects of a Phytobiotics-Based Product on the Fecal Bacterial Microbiome of Weaned Pigs
Cited by: 8
Author(s): Anlly Fresno Rueda, Ryan S Samuel, Benoit St‐Pierre
Software Mentions: 4
Published: about 5 years ago

10.3390/microorganisms8091377

Microbial Communities in Soils and Endosphere of Solanum tuberosum L. and their Response to Long-Term Fertilization
Cited by: 13
Author(s): Martina Kracmarova, Jana Karpíšková, Ondřej Uhlík, Michal Strejcek, Jiřina Száková, J. Balík, Kateřina Demnerova, Hana Stiborová
Software Mentions: 4
Published: about 6 years ago

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Papers Mentioning vegan 6,903