cran: vegan | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2019.02143

The Bacterial Microbiome Associated With Arid Biocrusts and the Biogeochemical Influence of Biocrusts Upon the Underlying Soil
Cited by: 37
Author(s): Benjamin Moreira‐Grez, Kang Tam, Adam T. Cross, Jean Wan Hong Yong, Deepak Kumaresan, Paul Nevill, Mark Farrell, Andrew S. Whiteley
Software Mentions: 5
Published: almost 7 years ago

10.3390/toxins11110629

Rapid and Differential Evolution of the Venom Composition of a Parasitoid Wasp Depending on the Host Strain
Cited by: 20
Author(s): Fanny Cavigliasso, Hugo Mathé-Hubert, Laurent Kremmer, Christian Rebuf, Jean‐Luc Gatti, Thibaut Malausa, Dominique Colinet, Marylène Poirié
Software Mentions: 5
Published: almost 7 years ago

10.1264/jsme2.ME20153

Inoculation of Mimosa Pudica with Paraburkholderia phymatum Results in Changes to the Rhizoplane Microbial Community Structure
Cited by: 5
Author(s): Shashini U. Welmillage, Qian Zhang, Virinchipuram S. Sreevidya, Michael J. Sadowsky, Prasad Gyaneshwar
Software Mentions: 5
Published: over 5 years ago

10.1007/s00248-020-01657-9

Identifying Potential Hosts of Short-Branch Microsporidia
Cited by: 3
Author(s): Annemie Doliwa, Micah Dunthorn, Erika Rassoshanska, Frédéric Mahe, David Bass, Camila Duarte Ritter
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.3246

Microbial communities in sediment from Zostera marina patches, but not the Z. marina leaf or root microbiomes, vary in relation to distance from patch edge
Cited by: 77
Author(s): Cassandra L. Ettinger, Sofie E. Voerman, Jenna M. Lang, John J. Stachowicz, Jonathan A. Eisen
Software Mentions: 5
Published: over 9 years ago

10.7717/peerj.11898

Biogeography, diversity and environmental relationships of shelf and deep-sea benthic Amphipoda around Iceland
Cited by: 7
Author(s): Anne‐Nina Lörz, Stefanie Kaiser, Jens Oldeland, Caroline Stolter, Karlotta Kürzel, Saskia Brix
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-021-97619-3

Plant biodiversity assessment through pollen DNA metabarcoding in Natura 2000 habitats (Italian Alps)
Cited by: 13
Author(s): Kleopatra Leontidou, Despoina Vokou, Anna Sandionigi, Antonia Bruno, Maria Lazarina, Johannes De Groeve, Mingai Li, Claudio Varotto, Matteo Girardi, Andrea Galimberti, Alessandro Cristofori
Software Mentions: 5
Published: about 5 years ago

10.3389/fmicb.2021.617280

Electron Acceptor Availability Shapes Anaerobically Methane Oxidizing Archaea (ANME) Communities in South Georgia Sediments
Cited by: 9
Author(s): Annika Schnakenberg, David A. Aromokeye, Ajinkya Kulkarni, Lisa Maier, Lea C Wunder, Tim Richter-Heitmann, Thomas Pape, Petra Pop Ristova, Solveig I Bühring, Ingrid Dohrmann, Gerhard Bohrmann, Sabine Kasten, Michael W. Friedrich
Software Mentions: 5
Published: over 5 years ago

10.1016/j.soilbio.2021.108391

Comparing root exudate collection techniques: An improved hybrid method
Cited by: 37
Author(s): Alex Williams, Holly Langridge, Angela L. Straathof, Graeme Fox, Howbeer Muhammadali, Katherine A. Hollywood, Yun Xu, Royston Goodacre, Franciska T. de Vries
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41598-021-98075-9

Distinguishing feature of gut microbiota in Tibetan highland coronary artery disease patients and its link with diet
Cited by: 14
Author(s): Yu-Lan Ma, Lulu Zhu, Zhuo Ma, Zhong-Shan Gao, Yumiao Wei, Youlu Shen, Lin Liu, Xingli Liu, Ming Ren
Software Mentions: 5
Published: about 5 years ago

10.3389/fmicb.2016.01727

Gradual Changes of Gut Microbiota in Weaned Miniature Piglets
Cited by: 123
Author(s): Jun Hu, Yangfan Nie, Jian Wei Chen, Yong Zhang, Zhi‐Chang Wang, Qi-Wen Fan, Xianghua Yan
Software Mentions: 5
Published: almost 10 years ago

10.3389/fmicb.2019.03138

Rare Species Shift the Structure of Bacterial Communities Across Sphagnum Compartments in a Subalpine Peatland
Cited by: 13
Author(s): Wen Tian, Xiang Xiao, Liyuan Ma, Stephanie Evers, Ruicheng Wang, Xuan Qiu, Hongmei Wang
Software Mentions: 5
Published: over 6 years ago

10.1007/s00248-019-01435-2

The Bacterial Flora Associated with the Polyphagous Aphid Aphis gossypii Glover (Hemiptera: Aphididae) Is Strongly Affected by Host Plants
Cited by: 26
Author(s): Shifen Xu, Li‐Yun Jiang, Ge‐Xia Qiao, Jing Chen
Software Mentions: 5
Published: almost 7 years ago

10.1002/ajpa.24293

Exploring directional and fluctuating asymmetry in the human palate during growth
Cited by: 8
Author(s): Gregorio Oxilia, Jessica C. Menghi Sartorio, Eugenio Bortolini, Giulia Zampirolo, Andrea Papini, Marco Boggioni, Sergio Martini, Filippo Marciani, Simona Arrighi, Carla Figus, Giulia Marciani, Matteo Romandini, Sara Silvestrini, Maria Elena Pedrosi, Tommaso Mori, Alessandro Riga, Ottmar Kullmer, Rachel Sarig, Luca Fiorenza, Melchiore Giganti, Rita Sorrentino, Maria Giovanna Belcastro, Jacopo Moggi‐Cecchi, Stefano Benazzi
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-95360-5

Illumina iSeq 100 and MiSeq exhibit similar performance in freshwater fish environmental DNA metabarcoding
Cited by: 5
Author(s): Ryohei Nakao, Ryutei Inui, Yoshihisa Akamatsu, Masuji Goto, Hideyuki Doi, Shiro Matsuoka
Software Mentions: 5
Published: about 5 years ago

10.1186/s12864-020-6665-2

The effect of antibiotics on the gut microbiome: a metagenomics analysis of microbial shift and gut antibiotic resistance in antibiotic treated mice
Cited by: 37
Author(s): Lei Xu, Anil Surathu, Isaac Raplee, Ashok Chockalingam, Sharron Stewart, Lacey Walker, Leonard Sacks, Vikram Patel, Zhihua Li, Rodney Rouse
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.2628

Sewage treatment plant associated genetic differentiation in the blue mussel from the Baltic Sea and Swedish west coast
Cited by: 9
Author(s): Josefine Larsson, Mikael Lönn, Emma Lind, Justyna Świeżak, Katarzyna Smolarz, Mats Grahn
Software Mentions: 5
Published: almost 10 years ago

10.1002/eap.1946

Urban meadows as an alternative to short mown grassland: effects of composition and height on biodiversity
Cited by: 59
Author(s): Briony A. Norton, Gary D. Bending, Rachel Rachel Clark, Ronald Corstanje, Nigel Dunnett, Karl L. Evans, Darren R. Grafius, Emily Gravestock, Samuel M. Grice, J. Arthur Harris, Sally Hilton, Helen Hoyle, E. C. Lim, Theresa G. Mercer, Mark Pawlett, Oliver L. Pescott, Jonathan Richards, Georgina E. Southon, Philip H. Warren
Software Mentions: 5
Published: about 7 years ago

10.1007/s00248-019-01412-9

Variation in the Microbiota Associated with Daphnia magna Across Genotypes, Populations, and Temperature
Cited by: 32
Author(s): Jonas Frankel-Bricker, Michael Song, Maia J. Benner, Sarah Schaack
Software Mentions: 5
Published: about 7 years ago

10.7717/peerj.1782

H2-saturation of high affinity H2-oxidizing bacteria alters the ecological niche of soil microorganisms unevenly among taxonomic groups
Cited by: 24
Author(s): Sarah Piché‐Choquette, Julien Tremblay, Susannah G. Tringe, Philippe Constant
Software Mentions: 5
Published: over 10 years ago

10.3389/fmicb.2020.01846

The Impact of Mercury Selection and Conjugative Genetic Elements on Community Structure and Resistance Gene Transfer
Cited by: 14
Author(s): James P. J. Hall, Ellie Harrison, Katariina Pärnänen, Marko Virta, Michael A. Brockhurst
Software Mentions: 5
Published: about 6 years ago

10.3389/fmicb.2018.01909

Intensified Pulse Rotations Buildup Pea Rhizosphere Pathogens in Cereal and Pulse Based Cropping Systems
Cited by: 25
Author(s): Yining Niu, Luke D. Bainard, William E. May, Zakir Hossain, Chantal Hamel, Yantai Gan
Software Mentions: 5
Published: about 8 years ago

10.1038/s42003-021-01690-5

Development of a robust protocol for the characterization of the pulmonary microbiota
Cited by: 6
Author(s): Nathan Dumont-Leblond, Marc Veillette, Christine Racine, Philippe Joubert, Caroline Duchaine
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-89926-6

Smoke from regional wildfires alters lake ecology
Cited by: 13
Author(s): Facundo Scordo, Sudeep Chandra, Erin Suenaga, Suzanne J. Kelson, Joshua Culpepper, Lucia Scaff, Flavia Tromboni, Timothy J. Caldwell, Carina Seitz, Juan Esteban Fiorenza, Craig E. Williamson, Steven Sadro, Kevin C. Rose, Simon R. Poulson
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.6162

Diversity analysis of the rhizospheric and endophytic bacterial communities of Senecio vulgaris L. (Asteraceae) in an invasive range
Cited by: 20
Author(s): Dandan Cheng, Zhongsai Tian, Liang Feng, Lin Xu, Hongmei Wang
Software Mentions: 5
Published: over 7 years ago

10.4269/ajtmh.18-0469

Potential Biological Control of Schistosomiasis by Fishes in the Lower Senegal River Basin
Cited by: 11
Author(s): Martin C. Arostegui, Chelsea L. Wood, Isabel J. Jones, Andrew J. Chamberlin, Nicolas Jouanard, Daouda Faye, Armand M. Kuris, Gilles Riveau, Giulio A. De Leo, Susanne H. Sokolow
Software Mentions: 5
Published: over 7 years ago

10.3389/fmicb.2020.00101

Predicting Microbiome Function Across Space Is Confounded by Strain-Level Differences and Functional Redundancy Across Taxa
Cited by: 26
Author(s): Elle M. Barnes, Erin L. Carter, James D. Lewis
Software Mentions: 5
Published: over 6 years ago

10.1186/s12864-021-07471-y

Exploring short k-mer profiles in cells and mobile elements from Archaea highlights the major influence of both the ecological niche and evolutionary history
Cited by: 8
Author(s): Ariane Bize, Cédric Midoux, Mahendra Mariadassou, Sophie Schbath, Patrick Forterre, Violette Da Cunha
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-96910-7

Long-term data reveal unimodal responses of ground beetle abundance to precipitation and land use but no changes in taxonomic and functional diversity
Cited by: 9
Author(s): Petr Zajíček, Ellen A. R. Welti, Nathan J. Baker, Kathrin Januschke, Oliver Brauner, Peter Haase
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-021-88964-4

A morphometric approach to track opium poppy domestication
Cited by: 18
Author(s): A.C. Assis Jesus, Vincent Bonhomme, Allowen Evin, Sarah Ivorra, Raül Soteras, Aurélie Salavert, Ferrán Antolín, Laurent Bouby
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2018.02381

How Rainforest Conversion to Agricultural Systems in Sumatra (Indonesia) Affects Active Soil Bacterial Communities
Cited by: 33
Author(s): Dirk Hölscher, Dominik Schneider, Martin Engelhaupt, Melanie Heinemann, Stephan Christel, Marini Wijayanti, Anja Meryandini, Rolf Daniel
Software Mentions: 5
Published: almost 8 years ago

10.3389/fmicb.2019.02118

Defining the Distinct Skin and Gut Microbiomes of the Northern Pike (Esox lucius)
Cited by: 20
Author(s): Elizabeth M. Reinhart, Benjamin J. Korry, Aislinn D. Rowan-Nash, Peter Belenky
Software Mentions: 5
Published: about 7 years ago

10.1038/s41598-021-96990-5

Wood ants as biological control of the forest pest beetles Ips spp.
Cited by: 8
Author(s): Gema Trigos‐Peral, Orsolya Juhász, Péter János Kiss, Gábor Módra, Anna Tenyér, István Maák
Software Mentions: 5
Published: about 5 years ago

10.1186/s12864-020-07180-y

Transcriptome analysis reveals mechanism of early ripening in Kyoho grape with hydrogen peroxide treatment
Cited by: 22
Author(s): Da‐Long Guo, Zhenguang Wang, Mao-Song Pei, Lili Guo, Yi‐He Yu
Software Mentions: 5
Published: almost 6 years ago

10.1038/s42003-021-02347-z

Invasive Burmese pythons alter host use and virus infection in the vector of a zoonotic virus
Cited by: 11
Author(s): Nathan D. Burkett‐Cadena, Erik M. Blosser, Anne A. Loggins, Monica C. Valente, Maureen T. Long, Lindsay P. Campbell, Lawrence E. Reeves, Irka Bargielowski, Robert A. McCleery
Software Mentions: 5
Published: about 5 years ago

10.3389/fmicb.2018.01526

Bioprospecting and Structure of Fungal Endophyte Communities Found in the Brazilian Biomes, Pantanal, and Cerrado
Cited by: 34
Author(s): Sandriele Aparecida Noriler, Daiani Cristina Savi, Rodrigo Aluízio, Angela María Palacio-Cortés, Yvelise Maria Possiede, Chirlei Glienke
Software Mentions: 5
Published: about 8 years ago

10.1111/1751-7915.13313

Long-term investigation of microbial community composition and transcription patterns in a biogas plant undergoing ammonia crisis
Cited by: 16
Author(s): Martin Fischer, Simon Güllert, Sarah Refai, Sven Künzel, Uwe Deppenmeier, Wolfgang R. Streit, Ruth A. Schmitz
Software Mentions: 5
Published: almost 8 years ago

10.1038/s41598-021-97519-6

Landscape genetics and the genetic legacy of Upper Paleolithic and Mesolithic hunter-gatherers in the modern Caucasus
Cited by: 1
Author(s): Alexander Gavashelishvili, Alexey Yanchukov, David Tarkhnishvili, Marine Murtskhvaladze, Irakli Akhvlediani, Ceren Kazancı
Software Mentions: 5
Published: about 5 years ago

10.1093/ajcn/nqab077

Associations of healthy food choices with gut microbiota profiles
Cited by: 33
Author(s): Kari K. Koponen, Aaro Salosensaari, Matti O. Ruuskanen, Aki S. Havulinna, Satu Männistö, Pekka Jousilahti, Joonatan Palmu, Rodolfo A. Salido, Karenina Sanders, Caitriona Brennan, Gregory Humphrey, Jon G. Sanders, Guillaume Méric, Susan Cheng, Michael Inouye, Mohit Jain, Teemu J. Niiranen, Liisa Valsta, Rob Knight, Veikko Salomaa
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-020-72206-0

Behavioral and trophic segregations help the Tahiti petrel to cope with the abundance of wedge-tailed shearwater when foraging in oligotrophic tropical waters
Cited by: 7
Author(s): Andréas Ravache, Karen Bourgeois, Henri Weimerskirch, Angélique Pagenaud, Sophie de Grissac, Mark G. R. Miller, Sylvain Dromzée, Anne Lorrain, Valérie Allain, Paco Bustamante, Jonas Bylemans, Dianne Gleeson, Yves Letourneur, Éric Vidal
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-020-71309-y

Effects of environmental factors on microbiota of fruits and soil of Coffea arabica in Brazil
Cited by: 25
Author(s): Tomás Gomes Reis Veloso, Marliane de Cássia Soares da Silva, Wilton Soares Cardoso, Rogério Carvalho Guarçoni, Maria Catarina Megumi Kasuya, Lucas Louzada Pereira
Software Mentions: 5
Published: about 6 years ago

10.1186/1471-2164-14-850

Midgut transcriptome profiling of Anoplophora glabripennis, a lignocellulose degrading cerambycid beetle
Cited by: 62
Author(s): Erin D. Scully, Kelli Hoover, John E. Carlson, Ming Tien, Scott M. Geib
Software Mentions: 5
Published: almost 13 years ago

10.7717/peerj.2064

Microfungal oasis in an oligotrophic desert: diversity patterns and community structure in three freshwater systems of Cuatro Ciénegas, Mexico
Cited by: 13
Author(s): Patricia Vélez, Jaime Gasca-Pineda, Edmundo Rosique-Gil, Luis E. Eguiarte, Laura Espinosa-Asuar, Valeria Souza
Software Mentions: 5
Published: over 10 years ago

10.1007/s00125-021-05464-w

Markers of metabolic health and gut microbiome diversity: findings from two population-based cohort studies
Cited by: 25
Author(s): Semi Zouiouich, Erikka Loftfield, Inge Huybrechts, Vivian Viallon, Panayiotis Louca, Emily Vogtmann, Philippa M Wells, Claire J. Steves, Karl‐Heinz Herzig, Cristina Menni, Marjo‐Riitta Järvelin, Rashmi Sinha, Marc J. Gunter
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.8094

The influence of ecological infrastructures adjacent to crops on their carabid assemblages in intensive agroecosystems
Cited by: 10
Author(s): Emilie Pécheur, Julien Piqueray, Arnaud Monty, Marc Dufrêne, Grégory Mahy
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.12067

The spleen bacteriome of wild rodents and shrews from Marigat, Baringo County, Kenya
Cited by: 2
Author(s): Rehema Liyai, Kimita Gathii, Clement Masakhwe, David Abuom, Beth Mutai, David Miruka Onyango, John N. Waitumbi
Software Mentions: 5
Published: about 5 years ago

10.1186/s12862-019-1570-5

Adaptive divergence in shell morphology in an ongoing gastropod radiation from Lake Malawi
Cited by: 6
Author(s): Bert Van Bocxlaer, Claudia M Ortiz-Sepulveda, Pieter Gurdebeke, Xavier Vekemans
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2018.02015

The RNA Complement of Outer Membrane Vesicles From Salmonella enterica Serovar Typhimurium Under Distinct Culture Conditions
Cited by: 46
Author(s): Antoine Malabirade, Janine Habier, Anna Heintz‐Buschart, Patrick May, Julien Godet, Rashi Halder, Alton Etheridge, David J. Galas, Paul Wilmes, Joëlle V. Fritz
Software Mentions: 5
Published: about 8 years ago

10.1186/s12866-020-01884-7

Diversity and distribution of marine heterotrophic bacteria from a large culture collection
Cited by: 24
Author(s): Isabel Sanz-Sáez, Guillem Salazar, Pablo Sánchez, Elena Lara, Marta Royo-Llonch, Elisabet L. Sà, Teresa Lucena, María J. Pujalte, Dolors Vaqué, Carlos M. Duarte, Josep M. Gasol, Carlos Pedrós‐Alió, Olga Sánchez, Silvia G. Acinas
Software Mentions: 5
Published: about 6 years ago

10.1111/1751-7915.13441

Direct effects of organic pollutants on the growth and gene expression of the Baltic Sea model bacterium Rheinheimera sp. <scp>BAL</scp>341
Cited by: 12
Author(s): Christofer M. G. Karlsson, Elena Cerro‐Gálvez, Daniel Lundin, Camilla Karlsson, Maria Vila‐Costa, Jarone Pinhassi
Software Mentions: 5
Published: about 7 years ago

10.1038/s41598-021-98549-w

Effect of functional oils or probiotics on performance and microbiota profile of newly weaned piglets
Cited by: 4
Author(s): Alexandre Maciel Vieira, Amanda Pires Sessin, Tatiany Aparecida Teixeira Soratto, Paula Gabriela da Silva Pires, Kátia Maria Cardinal, Glauber Wagner, Lucélia Hauptli, André Luís Ferreira Lima, Fabiano Dahlke, Diego Peres Netto, Priscila de Oliveira Moraes
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41598-020-71176-7

Chemical signatures of femoral pore secretions in two syntopic but reproductively isolated species of Galápagos land iguanas (Conolophus marthae and C. subcristatus)
Cited by: 4
Author(s): Giuliano Colosimo, Gabriele Di Marco, Alessia D’Agostino, Angelo Gismondi, Carlos Vera, Glenn P. Gerber, Michele Scardi, Antonella Canini, Gabriele Gentile
Software Mentions: 5
Published: about 6 years ago

10.7150/thno.59196

Microbial and genetic-based framework identifies drug targets in inflammatory bowel disease
Cited by: 10
Author(s): Zhihan Wang, Kai Guo, Pan Gao, Qinqin Pu, Ping Lin, Shugang Qin, Na Xie, Junguk Hur, Changlong Li, Canhua Huang, Min Wu
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-020-68933-z

Size resolved characteristics of urban and suburban bacterial bioaerosols in Japan as assessed by 16S rRNA amplicon sequencing
Cited by: 14
Author(s): Daisuke Tanaka, So Fujiyoshi, Fumito Maruyama, Motoshi Goto, Shinichi Koyama, Jun-ichi Kanatani, Junko Isobe, Masanori Watahiki, Akihiro Sakatoku, Shigehiro Kagaya, Shōgo Nakamura
Software Mentions: 5
Published: about 6 years ago

10.7717/peerj.3688

Skin bacterial microbiome of a generalist Puerto Rican frog varies along elevation and land use gradients
Cited by: 45
Author(s): Myra C. Hughey, Janelle A. Pena, R. Vazquez Reyes, Daniel Medina, Lisa K. Belden, Patricia A. Burrowes
Software Mentions: 5
Published: about 9 years ago

10.1111/1751-7915.12348

Towards the development of multifunctional molecular indicators combining soil biogeochemical and microbiological variables to predict the ecological integrity of silvicultural practices
Cited by: 2
Author(s): Vincent Peck, Liliana Quiza, Jean‐Philippe Buffet, Mondher Khdhiri, Audrey‐Anne Durand, Alain Paquette, Nelson Thiffault, Christian Messier, Nadyre Beaulieu, Claude Guertin, Philippe Constant
Software Mentions: 5
Published: over 10 years ago

10.1111/1751-7915.13485

Faecal microbiota and functional capacity associated with weaning weight in meat rabbits
Cited by: 19
Author(s): Shouguo Fang, Xuan Chen, Liwen Zhou, Chongchong Wang, Qiaohui Chen, Ruiyi Lin, Tianfang Xiao, Qianfu Gan
Software Mentions: 5
Published: almost 7 years ago

10.1038/s41598-021-91057-x

Ancient DNA, lipid biomarkers and palaeoecological evidence reveals construction and life on early medieval lake settlements
Cited by: 10
Author(s): Antony G. Brown, Maarten van Hardenbroek, Thierry Fonville, Kimberley Davies, Helen M. M. Mackay, Emily Murray, Katie Head, Phil Barratt, Finbar McCormick, Gentile Francesco Ficetola, Ludovic Gielly, A. Henderson, Anne Crone, Graham Cavers, Peter G. Langdon, Nicki J. Whitehouse, Duncan Pirrie, Inger Greve Alsos
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.3817

Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity
Cited by: 208
Author(s): Simon Roux, Joanne B. Emerson, Emiley A. Eloe‐Fadrosh, Matthew B. Sullivan
Software Mentions: 5
Published: almost 9 years ago

10.1016/j.mex.2020.100820

A statistical and numerical modeling approach for spatiotemporal reconstruction of glaciations in the Central Asian mountains
Cited by: 1
Author(s): Sourav Saha, Lewis A. Owen, Elizabeth N. Orr, Marc W. Caffee
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2020.00308

Characterization of the Gut Microbiota of the Antarctic Heart Urchin (Spatangoida) Abatus agassizii
Cited by: 13
Author(s): Guillaume Schwob, Léa Cabrol, Élie Poulin, Julieta Orlando
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.5812

Home sick: impacts of migratory beekeeping on honey bee (Apis mellifera) pests, pathogens, and colony size
Cited by: 24
Author(s): Samantha A. Alger, P. Alexander Burnham, Zachary S. Lamas, Alison K. Brody, Leif L. Richardson
Software Mentions: 5
Published: almost 8 years ago

10.1038/s41598-020-67362-2

Integrated metabolomics and gut microbiome to the effects and mechanisms of naoxintong capsule on type 2 diabetes in rats
Cited by: 22
Author(s): Zenghao Yan, Hao Wu, Haokui Zhou, Shuo Chen, Yan He, Weijian Zhang, Taobin Chen, Hongliang Yao, Weiwei Su
Software Mentions: 5
Published: about 6 years ago

10.3389/fmicb.2015.01171

Panamanian frog species host unique skin bacterial communities
Cited by: 94
Author(s): Lisa K. Belden, Myra C. Hughey, Eria A. Rebollar, Thomas P. Umile, Stephen C. Loftus, Elizabeth A. Burzynski, Kevin P. C. Minbiole, Leanna House, Roderick V. Jensen, Matthew H. Becker, Jenifer B. Walke, Daniel Medina, Roberto Ibáñez, Reid N. Harris
Software Mentions: 5
Published: almost 11 years ago

10.7717/peerj.1258

Humans differ in their personal microbial cloud
Cited by: 196
Author(s): James F. Meadow, Adam E. Altrichter, Ashley Bateman, Jason Stenson, Glen Brown, Jessica L. Green, Brendan J. M. Bohannan
Software Mentions: 5
Published: almost 11 years ago

10.7717/peerj.7715

Ecological networks reveal contrasting patterns of bacterial and fungal communities in glacier-fed streams in Central Asia
Cited by: 14
Author(s): Ze Ren, Hongkai Gao
Software Mentions: 5
Published: about 7 years ago

10.7717/peerj.10424

Ixodes scapularis microbiome correlates with life stage, not the presence of human pathogens, in ticks submitted for diagnostic testing
Cited by: 14
Author(s): Joshua C Gil, Zeinab H. Helal, Guillermo R. Risatti, Sarah M. Hird
Software Mentions: 5
Published: almost 6 years ago

10.3945/ajcn.116.139980

What’s normal? Oligosaccharide concentrations and profiles in milk produced by healthy women vary geographically ,
Cited by: 268
Author(s): Michelle K. McGuire, Courtney L. Meehan, Mark A. McGuire, Janet E. Williams, James E. Foster, Daniel Sellen, Elizabeth Kamau-Mbuthia, Egidioh W. Kamundia, Samwel Mbugua, Sophie E. Moore, Andrew M. Prentice, Linda J. Kvist, Gloria E. Otoo, Sarah L Brooker, William J. Price, Bahman Shafii, Caitlyn Placek, Kimberly A. Lackey, Bianca Robertson, Susana Manzano, Lorena Ruíz, Juan M. Rodríguez, Rossina G. Pareja, Lars Bode
Software Mentions: 5
Published: over 9 years ago

10.1038/s41396-020-0701-8

Comammox Nitrospira within the Yangtze River continuum: community, biogeography, and ecological drivers
Cited by: 85
Author(s): Shufeng Li, Haiying Wu, Liming Chen, Jiawen Wang, Maosheng Zheng, Sitong Liu, Qian Chen, Jinren Ni
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-020-66178-4

Comparison of lung microbiota between antineutrophil cytoplasmic antibody-associated vasculitis and sarcoidosis
Cited by: 5
Author(s): Shoichi Fukui, Shimpei Morimoto, Kunihiro Ichinose, Shota Nakashima, Hiroshi Ishimoto, Atsuko Hara, Tomoyuki Kakugawa, Noriho Sakamoto, Yoshika Tsuji, Toshiyuki Aramaki, Tomohiro Koga, Shin‐ya Kawashiri, Naoki Iwamoto, Mami Tamai, Hideki Nakamura, Tomoki Origuchi, Yukitaka Ueki, Shino Suzuki, Hiroshi Mukae, Atsushi Kawakami
Software Mentions: 5
Published: over 6 years ago

10.1038/s41396-020-0625-3

Microbial symbionts and ecological divergence of Caribbean sponges: A new perspective on an ancient association
Cited by: 22
Author(s): Christopher Freeman, Cole G. Easson, Kenan O. Matterson, Robert Thacker, David M. Baker, Valerie J. Paul
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-020-64279-8

Compared to conventional, ecological intensive management promotes beneficial proteolytic soil microbial communities for agro-ecosystem functioning under climate change-induced rain regimes
Cited by: 13
Author(s): Martina Lori, Gabin Piton, Sarah Symanczik, Nicolas Legay, L. Brussaard, Sebastian Jaenicke, Eduardo Nascimento, Filipa Reis, José Paulo Sousa, Paul Mäder, Andreas Gattinger, Jean Christophe Clément, Arnaud Foulquier
Software Mentions: 5
Published: over 6 years ago

10.1038/s42003-021-02372-y

Function-adaptive clustered nanoparticles reverse Streptococcus mutans dental biofilm and maintain microbiota balance
Cited by: 9
Author(s): Fatemeh Ostadhossein, Parikshit Moitra, Esra Altun, Debapriya Dutta, Dinabandhu Sar, Indu Tripathi, Shih Hsuan Hsiao, Valeriya Kravchuk, Shuming Nie, Dipanjan Pan
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0145099

Variability of Symbiodinium Communities in Waters, Sediments, and Corals of Thermally Distinct Reef Pools in American Samoa
Cited by: 54
Author(s): Ross Cunning, Denise M. Yost, Marisa L. Guarinello, Hollie M. Putnam, Ruth D. Gates
Software Mentions: 5
Published: over 10 years ago

10.3389/fmicb.2019.02944

Evidence for Co-evolutionary History of Early Diverging Lycopodiaceae Plants With Fungi
Cited by: 12
Author(s): Gian Maria Niccolò Benucci, Delaney Burnard, Lara D. Shepherd, Gregory Bonito, Andrew B. Munkacsi
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0229052

Combined impact of pesticides and other environmental stressors on animal diversity in irrigation ponds
Cited by: 16
Author(s): Hiroshi C. Ito, Hiroaki Shiraishi, Megumi Nakagawa, Noriko Takamura
Software Mentions: 5
Published: about 6 years ago

10.3390/jof6040244

Effect of Host, Environment and Fungal Growth on Fungal Leaf Endophyte Communities in Taiwan
Cited by: 7
Author(s): Yu‐Ling Huang
Software Mentions: 5
Published: almost 6 years ago

10.7717/peerj.8172

Exploring profile and potential influencers of vaginal microbiome among asymptomatic pregnant Chinese women
Cited by: 10
Author(s): Yining He, Yun Huang, Zhengyin Zhang, Fei Yu, Yuejie Zheng
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0244339

The effects of the sex chromosomes on the inheritance of species-specific traits of the copulatory organ shape in Drosophila virilis and Drosophila lummei
Cited by: 1
Author(s): А. М. Куликов, S. Yu. Sorokina, А. И. Мельников, Н. Г. Горностаев, Dmitriy G. Seleznev, O. E. Lazebny
Software Mentions: 5
Published: over 5 years ago

10.3390/jof6030180

Stem Endophytic Mycobiota in Wild and Domesticated Wheat: Structural Differences and Hidden Resources for Wheat Improvement
Cited by: 17
Author(s): Xiang Sun, Evsey Kosman, Amir Sharon
Software Mentions: 5
Published: almost 6 years ago

10.1038/s42003-018-0041-7

Ecology determines how low antibiotic concentration impacts community composition and horizontal transfer of resistance genes
Cited by: 65
Author(s): Johannes Cairns, Lasse Ruokolainen, Jenni Hultman, Manu Tamminen, Marko Virta, Teppo Hiltunen
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0222527

Bacterial diversity in Icelandic cold spring sources and in relation to the groundwater amphipod Crangonyx islandicus
Cited by: 7
Author(s): Ragnhildur Guðmundsdóttir, Agnes-Katharina Kreiling, Bjarni K. Kristjánsson, V. Marteinsson, Snæbjörn Pálsson
Software Mentions: 5
Published: almost 7 years ago

10.3389/fmicb.2021.660190

Relationships Between the Microbial Composition and the Geochemistry and Mineralogy of the Cobalt-Bearing Legacy Mine Tailings in Northeastern Ontario
Cited by: 5
Author(s): Brittaney Courchesne, Michael Schindler, Nadia Mykytczuk
Software Mentions: 5
Published: about 5 years ago

10.3389/fmicb.2016.00374

Methane Seep in Shallow-Water Permeable Sediment Harbors High Diversity of Anaerobic Methanotrophic Communities, Elba, Italy
Cited by: 34
Author(s): S. Emil Ruff, Hanna Kuhfuß, Gunter Wegener, Christian Lott, Alban Ramette, Johanna Wiedling, Katrin Knittel, Miriam Weber
Software Mentions: 5
Published: over 10 years ago

10.1038/s41598-020-61558-2

Innovation in wild Barbary macaques (Macaca sylvanus)
Cited by: 16
Author(s): Federica Amici, Álvaro López Caicoya, Bonaventura Majolo, Anja Widdig
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-020-60015-4

Respiratory mycobiome and suggestion of inter-kingdom network during acute pulmonary exacerbation in cystic fibrosis
Cited by: 62
Author(s): Perrine Soret, Louise-Eva Vandenborght, F Francis, Noémie Coron, Raphaël Enaud, Marta Avalos, Thierry Schaeverbeke, Patrick Berger, Michaël Fayon, Rodolphe Thiébaut, Laurence Delhaès, Magali Chabé, Christophe Audebert, Isabelle Durand-Joly, Amale Boldron, Isabelle Pin, Odile Cognet, H Pelloux, A. Prévotat, B. Wallaert, N. Wizla, C. Thumerelle, Dominique Turck
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-020-60564-8

16S rRNA gene sequencing reveals an altered composition of the gut microbiota in chickens infected with a nephropathogenic infectious bronchitis virus
Cited by: 10
Author(s): Puzhi Xu, Yan Shi, Ping Liu, Yulin Yang, Changming Zhou, Guyue Li, Junrong Luo, Caiying Zhang, Cao H, Guoliang Hu, Xiaomin Guo
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0219962

Chronic obstructive pulmonary disease upper airway microbiome is associated with select clinical characteristics
Cited by: 17
Author(s): Alexa A. Pragman, Katherine A. Knutson, Trevor Gould, Shane Hodgson, Richard E. Isaacson, Cavan Reilly, Chris H. Wendt
Software Mentions: 5
Published: about 7 years ago

10.1002/mbo3.1231

Marine biofilms on different fouling control coating types reveal differences in microbial community composition and abundance
Cited by: 16
Author(s): Maria Papadatou, Samuel Robson, Sergey Dobretsov, Joy E. M. Watts, Jennifer Longyear, Maria Salta
Software Mentions: 5
Published: about 5 years ago

10.7717/peerj.11230

Ectomycorrhizal fungal communities associated with Larix gemelinii Rupr. in the Great Khingan Mountains, China
Cited by: 2
Author(s): Yong-Long Wang, Ye Zhao, Ying Xu, MA Jian-jun, Busayo Joshua Babalola, Yida Fan
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.1900

A comparison of species composition and community assemblage of secondary forests between the birch and pine-oak belts in the mid-altitude zone of the Qinling Mountains, China
Cited by: 13
Author(s): Zongzheng Chai, Dexiang Wang
Software Mentions: 5
Published: over 10 years ago

10.1007/s00227-018-3411-2

Interactive effects of herbivory and substrate orientation on algal community dynamics on a coral reef
Cited by: 19
Author(s): Alain Durán, Ligia Collado‐Vides, L. Palma, Deron E. Burkepile
Software Mentions: 5
Published: about 8 years ago

10.7717/peerj.6481

Mat thickness associated withDidymosphenia geminataandCymbellaspp. in the southern rivers of Chile
Cited by: 1
Author(s): Daniel Zamorano, Matías Peredo-Parada, Diana J. Lillo, Jorge Parodí, Carolina A. Díaz
Software Mentions: 5
Published: over 7 years ago

10.1038/s41598-020-68891-6

Structure and co-occurrence patterns of bacterial communities associated with white faeces disease outbreaks in Pacific white-leg shrimp Penaeus vannamei aquaculture
Cited by: 27
Author(s): Yustian Rovi Alfiansah, Sonja Peters, Jens Harder, Christiane Hassenrück, Astrid Gärdes
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-021-91425-7

Establishment and assessment of an amplicon sequencing method targeting the 16S-ITS-23S rRNA operon for analysis of the equine gut microbiome
Cited by: 17
Author(s): Yuta Kinoshita, Hidekazu Niwa, Eri Uchida‐Fujii, Toshio Nukada
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-96378-5

Biogeography of acoustic biodiversity of NW Mediterranean coralligenous reefs
Cited by: 13
Author(s): Lucia Di Iorio, Manon Audax, Julie Déter, Florian Holon, Julie Lossent, Cédric Gervaise, Pierre Boissery
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0237118

Modulation of the intestinal microbiota of broilers supplemented with monensin or functional oils in response to challenge by Eimeria spp.
Cited by: 14
Author(s): Alexandre Maciel Vieira, Tatiany Aparecida Teixeira Soratto, Kátia Maria Cardinal, Glauber Wagner, Lucélia Hauptli, André Luís Ferreira Lima, Fabiano Dahlke, Diego Peres Netto, Priscila de Oliveira Moraes, Andréa Machado Leal Ribeiro
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pone.0037818

Bacterial Communities in Women with Bacterial Vaginosis: High Resolution Phylogenetic Analyses Reveal Relationships of Microbiota to Clinical Criteria
Cited by: 511
Author(s): Sujatha Srinivasan, Noah G. Hoffman, Martin Morgan, F. A. Matsen, Tina L. Fiedler, Richard Hall, Frederick J. Ross, Connor O. McCoy, Roger E. Bumgarner, Jeanne M. Marrazzo, David N. Fredricks
Software Mentions: 5
Published: over 14 years ago

10.1371/journal.pone.0036466

A Metagenomic Approach to Characterization of the Vaginal Microbiome Signature in Pregnancy
Cited by: 546
Author(s): Kjersti M. Aagaard, Kevin Riehle, Jun Ma, Nicola Segata, Toni Ann Mistretta, Cristian Coarfa, Sabeen Raza, Sean Rosenbaum, Ignatia Van den Veyver, Aleksandar Milosavljevic, Dirk Gevers, Curtis Huttenhower, Joseph F. Petrosino, James Versalovic
Software Mentions: 5
Published: over 14 years ago

10.1038/s41598-019-41452-2

Using Bacterial Transcriptomics to Investigate Targets of Host-Bacterial Interactions in Caenorhabditis elegans
Cited by: 21
Author(s): Jason P. Chan, Justin Wright, Hoi Tong Wong, Anastasia Ardasheva, Jamey T. Brumbaugh, Christopher J. McLimans, Regina Lamendella
Software Mentions: 5
Published: over 7 years ago

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Papers Mentioning vegan 6,903