Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: updog

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/updog

Flexible Genotyping for Polyploids
10 versions
Latest release: about 2 years ago
4 dependent packages
335 downloads last month

Papers Mentioning updog 10

Using probabilistic genotypes in linkage analysis of polyploids
Cited by: 2
Author(s): Yanlin Liao, Roeland E. Voorrips, Peter M. Bourke, Giorgio Tumino, Paul Arens, R.G.F. Visser, M.J.M. Smulders, Chris Maliepaard
Software Mentions: 7
Published: over 3 years ago

10.1534/g3.118.200913

polyRAD: Genotype Calling with Uncertainty from Sequencing Data in Polyploids and Diploids
Cited by: 59
Author(s): Lindsay V. Clark, Alexander E. Lipka, Erik J. Sacks
Software Mentions: 7
Published: over 5 years ago

10.1534/g3.118.200986

Genomic Selection with Allele Dosage in <i>Panicum maximum</i> Jacq.
Cited by: 34
Author(s): Letícia Aparecida de Castro Lara, M. F. Santos, Liana Jank, Lucimara Chiari, Mariane de Mendonça Vilela, Rodrigo R. Amadeu, José Fortunato Ferreira Santos, Guilherme da Silva Pereira, Zhao‐Bang Zeng, Antônio Augusto Franco Garcia
Software Mentions: 6
Published: over 5 years ago

10.3390/pathogens9110967

QTL Mapping for Resistance to Cankers Induced by Pseudomonas syringae pv. actinidiae (Psa) in a Tetraploid Actinidia chinensis Kiwifruit Population
Cited by: 10
Author(s): Jibran Tahir, Cyril Brendolise, S.M. Hoyte, Marielle Lucas, Susan Thomson, Kirsten Hoeata, Catherine McKenzie, Andrew Wotton, Keith A. Funnell, E.R. Morgan, Duncan Hedderley, David Chagné, Peter M. Bourke, John McCallum, Susan E. Gardiner, L. D. Gea
Software Mentions: 5
Published: about 4 years ago

10.1186/s12859-019-2703-y

FitTetra 2.0 – improved genotype calling for tetraploids with multiple population and parental data support
Cited by: 32
Author(s): Konrad Zych, Gerrit Gort, Chris Maliepaard, Ritsert C. Jansen, Roeland E. Voorrips
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2021.676326

Genomic Selection in an Outcrossing Autotetraploid Fruit Crop: Lessons From Blueberry Breeding
Cited by: 18
Author(s): Luís Felipe Ventorim Ferrão, Rodrigo R. Amadeu, Juliana Benevenuto, Ivone de Bem Oliveira, Patricio Muñoz
Software Mentions: 4
Published: over 3 years ago

10.3389/fpls.2020.00025

Exploring Deep Learning for Complex Trait Genomic Prediction in Polyploid Outcrossing Species
Cited by: 71
Author(s): Laura M. Zingaretti, Salvador A. Gezan, Luís Felipe Ventorim Ferrão, Luis F. Osorio, Amparo Monfort, Patricio Muñoz, Vance M. Whitaker, Miguel Pérez‐Enciso
Software Mentions: 4
Published: almost 5 years ago

10.3389/fpls.2020.00015

High-Resolution Linkage Map With Allele Dosage Allows the Identification of Regions Governing Complex Traits and Apospory in Guinea Grass (Megathyrsus maximus)
Cited by: 14
Author(s): Thamiris Gatti Déo, Rita Ferreira, Letícia A. C. Lara, Aline Costa Lima Moraes, Alessandro Alves‐Pereira, Fabrício Augusto de Oliveira, Antônio Augusto Franco Garcia, M. F. Santos, Liana Jank, Anete Pereira de Souza
Software Mentions: 3
Published: over 4 years ago

10.1534/g3.120.401433

Genetic Mapping in Autohexaploid Sweet Potato with Low-Coverage NGS-Based Genotyping Data
Cited by: 12
Author(s): Eiji Yamamoto, Kenta Shirasawa, T. Kimura, Yuki Monden, Masaru Tanaka, Sachiko Isobe
Software Mentions: 3
Published: over 4 years ago

10.1002/ece3.7572

MultiGWAS: An integrative tool for Genome Wide Association Studies in tetraploid organisms
Cited by: 4
Author(s): Luis Garreta, Ivania Cerón‐Souza, Manfred Ricardo Palacio, Paula H. Reyes-Herrera
Software Mentions: 3
Published: over 3 years ago