cran: uclust | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2016.01486

Bacteriome-Localized Intracellular Symbionts in Pollen-Feeding Beetles of the Genus Dasytes (Coleoptera, Dasytidae)
Cited by: 20
Author(s): Benjamin Weiß, Martin Kaltenpoth
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2018.02349

Specific Volumetric Weight-Driven Shift in Microbiota Compositions With Saccharifying Activity Change in Starter for Chinese Baijiu Fermentation
Cited by: 33
Author(s): Bowen Wang, Qun Wu, Yan Xu, Baoguo Sun
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2016.01491

Modulation of the Bifidobacterial Communities of the Dog Microbiota by Zeolite
Cited by: 11
Author(s): A. Sabbioni, Chiara Ferrario, Christian Milani, Leonardo Mancabelli, Enzo Riccardi, Francesco Di Ianni, Valentino Beretti, P. Superchi, Maria Cristina Ossiprandi
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2015.00274

Biosurfactant production from marine hydrocarbon-degrading consortia and pure bacterial strains using crude oil as carbon source
Cited by: 117
Author(s): Eleftheria Antoniou, Stilianos Fodelianakis, Emmanouela Korkakaki, Nicolas Kalogerakis
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2017.01970

In Vivo Isotopic Labeling of Symbiotic Bacteria Involved in Cellulose Degradation and Nitrogen Recycling within the Gut of the Forest Cockchafer (Melolontha hippocastani)
Cited by: 29
Author(s): Pol Alonso-Pernas, Stefan Bartram, Erika M Arias-Cordero, Alexey L. Novoselov, Lorena Halty-deLeon, Yongqi Shao, Wilhelm Boland
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2020.01052

Unraveling the Complexity of Soil Microbiomes in a Large-Scale Study Subjected to Different Agricultural Management in Styria
Cited by: 27
Author(s): Martina Köberl, Philipp Wagner, Henry Müller, Robert Matzer, Hans Unterfrauner, Tomislav Cernava, Gabriele Berg
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2018.02191

Changes in the Intestine Microbial, Digestive, and Immune-Related Genes of Litopenaeus vannamei in Response to Dietary Probiotic Clostridium butyricum Supplementation
Cited by: 88
Author(s): Yafei Duan, Yun Wang, Hongbiao Dong, Xian Ding, Qingsong Liu, Hua Li, Jiasong Zhang, Dan Xiong
Software Mentions: 1
Published: about 6 years ago

10.3389/fvets.2015.00056

Temporal Relationships Exist Between Cecum, Ileum, and Litter Bacterial Microbiomes in a Commercial Turkey Flock, and Subtherapeutic Penicillin Treatment Impacts Ileum Bacterial Community Establishment
Cited by: 45
Author(s): Jessica L. Danzeisen, Jonathan B. Clayton, Hu Huang, Dan Knights, Brian McComb, Shivdeep Singh Hayer, Timothy J. Johnson
Software Mentions: 1
Published: about 9 years ago

10.3389/fvets.2020.482637

Microbiota Analysis of Chickens Raised Under Stressed Conditions
Cited by: 8
Author(s): Rabindra K. Mandal, Tieshan Jiang, Robert F. Wideman, Troy Lohrmann, Young Min Kwon
Software Mentions: 1
Published: about 4 years ago

10.1186/1742-9994-11-39

Second generation sequencing and morphological faecal analysis reveal unexpected foraging behaviour by Myotis nattereri (Chiroptera, Vespertilionidae) in winter
Cited by: 79
Author(s): Paul R. Hope, Kristine Bohmann, M. Thomas P. Gilbert, Marie Lisandra Zepeda Mendoza, Orly Razgour, Gareth Jones
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12263-017-0583-1

Impact of supplementation with a food-derived microbial community on obesity-associated inflammation and gut microbiota composition
Cited by: 22
Author(s): Marianna Roselli, Chiara Devirgiliis, Paola Zinno, Barbara Guantario, Alberto Finamore, Rita Rami, Giuditta Perozzi
Software Mentions: 1
Published: about 7 years ago

10.1186/gb-2011-12-5-r50

Moving pictures of the human microbiome
Cited by: 913
Author(s): J. Gregory Caporaso, Christian L. Lauber, Elizabeth K. Costello, Donna Berg-Lyons, Antonio González, Jesse Stombaugh, Dan Knights, Pawel Gajer, Jacques Ravel, Noah Fierer, Jeffrey I. Gordon, Rob Knight
Software Mentions: 1
Published: almost 14 years ago

10.1186/s13059-014-0531-y

Temporal variability is a personalized feature of the human microbiome
Cited by: 332
Author(s): Gilberto E. Flores, J. Gregory Caporaso, Jessica B. Henley, Jai Ram Rideout, Daniel David Domogala, John Chase, Jonathan W. Leff, Yoshiki Vázquez-Baeza, Antonio González, Rob Knight, Robert R. Dunn, Noah Fierer
Software Mentions: 1
Published: almost 10 years ago

10.1080/19490976.2018.1560754

Effects of a synbiotic on the fecal microbiome and metabolomic profiles of healthy research cats administered clindamycin: a randomized, controlled trial
Cited by: 30
Author(s): Jacqueline C. Whittemore, Jennifer E. Stokes, Joshua Price, Jan S. Suchodolski
Software Mentions: 1
Published: almost 6 years ago

10.1080/19490976.2021.1880240

<i>Akkermansia muciniphila</i> and environmental enrichment reverse cognitive impairment associated with high-fat high-cholesterol consumption in rats
Cited by: 40
Author(s): Sara G. Higarza, Silvia Arboleya, Jorge L. Árias, Miguel Gueimonde, Natalia Arias
Software Mentions: 1
Published: almost 4 years ago

10.1001/jamanetworkopen.2020.18119

Assessment of Neonatal Intensive Care Unit Practices and Preterm Newborn Gut Microbiota and 2-Year Neurodevelopmental Outcomes
Cited by: 37
Author(s): Jean‐Christophe Rozé, Pierre‐Yves Ancel, Laetitia Marchand-Martin, Clotilde Rousseau, Emmanuel Montassier, Céline Monot, Karine Le Roux, Marine Butin, Matthieu Resche‐Rigon, Julio Aires, Josef Neu, Patricia Lepage, Marie‐José Butel
Software Mentions: 1
Published: about 4 years ago

10.1186/s40104-018-0238-0

Supplementation of amylase combined with glucoamylase or protease changes intestinal microbiota diversity and benefits for broilers fed a diet of newly harvested corn
Cited by: 39
Author(s): Dafei Yin, Xiaonan Yin, Xingyu Wang, Zhao Lei, Maofei Wang, Yuming Guo, Samuel E. Aggrey, Wei Nie, Jianmin Yuan
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.ppat.1003829

A Compositional Look at the Human Gastrointestinal Microbiome and Immune Activation Parameters in HIV Infected Subjects
Cited by: 317
Author(s): Ece Mutlu, Ali Keshavarzian, John Losurdo, Garth Swanson, Basile Siewe, Christopher B. Forsyth, Audrey L. French, Patricia Demarais, Yan Sun, Lars M. Koenig, Stephen B. Cox, Phillip A. Engen, Prachi Chakradeo, Rawan Abbasi, Annika Gorenz, Charles M. Burns, Alan Landay
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.ppat.1005246

Host and Symbiont Jointly Control Gut Microbiota during Complete Metamorphosis
Cited by: 135
Author(s): Paul R. Johnston, Jens Rolff
Software Mentions: 1
Published: about 9 years ago

10.1186/s12931-017-0645-3

Comparing microbiota profiles in induced and spontaneous sputum samples in COPD patients
Cited by: 23
Author(s): Solveig Tangedal, Marianne Aanerud, Rune Grønseth, Christine Drengenes, Harald G. Wiker, Per Bakke, Tomas Mikal Eagan
Software Mentions: 1
Published: about 7 years ago

10.1038/srep18396

Unveiling Bacterial Interactions through Multidimensional Scaling and Dynamics Modeling
Cited by: 9
Author(s): Pedro Dorado-Morales, Cristina Vilanova, Carlos P. Garay, Jose Manuel Martí, Manuel Porcar
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep29505

Biodiversity and Activity of the Gut Microbiota across the Life History of the Insect Herbivore Spodoptera littoralis
Cited by: 238
Author(s): Bosheng Chen, Beng-Soon Teh, Chao Sun, Sirui Hu, Xin-Jiang Lu, Wilhelm Boland, Yongqi Shao
Software Mentions: 1
Published: over 8 years ago

10.1038/srep32385

Dairy and plant based food intakes are associated with altered faecal microbiota in 2 to 3 year old Australian children
Cited by: 51
Author(s): Paula Smith‐Brown, Mark Morrison, Lutz Krause, Peter S. W. Davies
Software Mentions: 1
Published: about 8 years ago

10.1038/srep45318

Members of Gammaproteobacteria as indicator species of healthy banana plants on Fusarium wilt-infested fields in Central America
Cited by: 75
Author(s): Martina Köberl, Miguel Dita, Alfonso Martinuz, Charles Staver, Gabriele Berg
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-01217-1

Fecal microbial characterization of hospitalized patients with suspected infectious diarrhea shows significant dysbiosis
Cited by: 26
Author(s): Tzipi Braun, Ayelet Di Segni, Marina BenShoshan, Roy Asaf, James E. Squires, Sarit Farage Barhom, Efrat Glick Saar, Karen Cesarkas, Gill Smollan, Batia Weiss, Sharon Amit, Nathan Keller, Yael Haberman
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-06055-9

Microbiome analysis and confocal microscopy of used kitchen sponges reveal massive colonization by Acinetobacter, Moraxella and Chryseobacterium species
Cited by: 38
Author(s): Massimiliano Cardinale, Dominik Kaiser, Tillmann Lueders, Sylvia Schnell, Markus Egert
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-08554-1

Microbial communities with distinct denitrification potential in spruce and beech soils differing in nitrate leaching
Cited by: 33
Author(s): Jiří Bárta, Karolina Tahovská, Hana Šantrůčková, Filip Oulehle
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-10734-y

Gut microbiota composition is associated with polypharmacy in elderly hospitalized patients
Cited by: 131
Author(s): Andrea Ticinesi, Christian Milani, Fulvio Lauretani, Antonio Nouvenne, Leonardo Mancabelli, Gabriele Andrea Lugli, Francesca Turroni, Sabrina Duranti, Marta Mangifesta, Alice Viappiani, Chiara Ferrario, Marcello Maggio, Marco Ventura, Tiziana Meschi
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-15784-w

Biogas production from food waste via co-digestion and digestion- effects on performance and microbial ecology
Cited by: 68
Author(s): Mirzaman Zamanzadeh, Live Heldal Hagen, Kine Svensson, Roar Linjordet, Svein Jarle Horn
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-32413-2

Mucosal microbiota of intestinal polyps reveals putative biomarkers of colorectal cancer
Cited by: 123
Author(s): Marta Mangifesta, Leonardo Mancabelli, Christian Milani, Federica Gaiani, Nicola de’Angelis, Gian Luigi de’Angelis, Douwe van Sinderen, Marco Ventura, Francesca Turroni
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-32700-y

Fecal microbiota profile in a group of myasthenia gravis patients
Cited by: 38
Author(s): Germán Morís, Silvia Arboleya, Leonardo Mancabelli, Christian Milani, Marco Ventura, Clara G. de los Reyes‐Gavilán, Miguel Gueimonde
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-019-47577-8

Structural and functional microbial diversity along a eutrophication gradient of interconnected lakes undergoing anthropopressure
Cited by: 65
Author(s): Bartosz Kiersztyn, Ryszard J. Chróst, Tomasz Kaliński, Waldemar Siuda, Aleksandra Bukowska, Grzegorz Kowalczyk, Karolina Grabowska
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-67927-1

Fragmentation of plastic objects in a laboratory seawater microcosm
Cited by: 86
Author(s): Jan Gerritse, H.A. Leslie, Caroline De Tender, Lisa Devriese, A.D. Vethaak
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-021-88928-8

Gastrokine-1, an anti-amyloidogenic protein secreted by the stomach, regulates diet-induced obesity
Cited by: 4
Author(s): Anne-Marie C. Overstreet, Bernadette E. Grayson, Antonia Boger, Danika Bakke, Erin M. Carmody, Cayla Bales, Shirley Paski, SB Murphy, Christopher R. Dethlefs, Kara J. Shannon, Katie R. Adlaka, Claire E. Wolford, Vincent J. Campiti, Christina V. Raghunandan, Randy J. Seeley, David L. Boone
Software Mentions: 1
Published: over 3 years ago

10.1186/s40064-015-1201-6

Microbial community profiles of the colon from steers differing in feed efficiency
Cited by: 47
Author(s): Phillip R. Myer, John W. Wells, Timothy P. L. Smith, L. A. Kuehn, H. C. Freetly
Software Mentions: 1
Published: about 9 years ago

10.4056/sigs.5029016

Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California
Cited by: 32
Author(s): Erik R. Hawley, Hailan Piao, Nicole M. Scott, Stephanie Malfatti, Ioanna Pagani, Marcel Huntemann, Amy Chen, Tijana Glavina del Rio, Brian Foster, Alex Copeland, Janet Jansson, Amrita Pati, Susannah G. Tringe, Jack A. Gilbert, Thomas D. Lorenson, Matthias Hess
Software Mentions: 1
Published: almost 11 years ago

10.1186/s40793-017-0279-6

Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate
Cited by: 4
Author(s): Patrik D’haeseleer, Jackson Z. Lee, Leslie Prufert-Bebout, Luke C Burow, Angela M. Detweiler, Peter K. Weber, Ulaş Karaöz, Eoin L. Brodie, Tijana Glavina del Rio, Susannah G. Tringe, Brad M. Bebout, Jennifer Pett‐Ridge
Software Mentions: 1
Published: about 7 years ago

10.3390/toxins10090347

Colon Microbiome of Pigs Fed Diet Contaminated with Commercial Purified Deoxynivalenol and Zearalenone
Cited by: 25
Author(s): Kondreddy Eswar Reddy, Jin Young Jeong, Jae Yoon Song, Yookyung Lee, Hyun-Jeong Lee, Dong-Wook Kim, Hyun Jung Jung, Ki‐Hyun Kim, Minji Kim, Young Kyun Oh, Sung Dae Lee, Minseok Kim
Software Mentions: 1
Published: about 6 years ago

10.1128/mBio.02298-19

The Microbiota Promotes Arterial Thrombosis in Low-Density Lipoprotein Receptor-Deficient Mice
Cited by: 47
Author(s): Klytaimnistra Kiouptsi, Sven Jäckel, Giulia Pontarollo, Alexandra Grill, Marijke J. E. Kuijpers, Eivor Wilms, Christian Weber, Felix Sommer, Magdolna Nagy, Carlos Neideck, Yvonne Jansen, Stefanie Ascher, Henning Formes, Cornelia Karwot, Franziska Bayer, Bettina Kollar, Saravanan Subramaniam, Michael Molitor, Philip Wenzel, Philip Rosenstiel, Hristo Todorov, Susanne Gerber, Ulrich Walter, Kerstin Jurk, Johan W. M. Heemskerk, Yvonne Döring, Carsten Reinhardt
Software Mentions: 1
Published: about 5 years ago

10.1128/mSphere.00387-19

Experimental Evidence for Adaptation to Species-Specific Gut Microbiota in House Mice
Cited by: 27
Author(s): Andrew H. Moeller, João Carlos Gomes-Neto, Sara Mantz, Hatem Kittana, Rafael R. Segura Muñoz, Robert Schmaltz, Amanda E. Ramer‐Tait, Michael W. Nachman
Software Mentions: 1
Published: about 5 years ago

10.1128/mSystems.00092-16

Novel Syntrophic Populations Dominate an Ammonia-Tolerant Methanogenic Microbiome
Cited by: 30
Author(s): Jeremy A. Frank, Magnus Ø. Arntzen, Li Sun, Live Heldal Hagen, McHardy Ac, Svein Jarle Horn, Vincent G. H. Eijsink, Anna Schnürer, Phillip B. Pope
Software Mentions: 1
Published: about 8 years ago

10.1128/mSystems.00021-16

Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies
Cited by: 324
Author(s): Se Jin Song, Amir Almasi‐Hashiani, Jessica L. Metcalf, Katherine R. Amato, Zhenjiang Zech Xu, Greg Humphrey, Rob Knight
Software Mentions: 1
Published: over 8 years ago

10.1128/mSystems.00046-16

The Oral and Skin Microbiomes of Captive Komodo Dragons Are Significantly Shared with Their Habitat
Cited by: 55
Author(s): Embriette R. Hyde, José A. Navas-Molina, Se Jin Song, Jordan G. Kueneman, Gail Ackermann, César Cardona, Gregory Humphrey, Don R. Boyer, Tom Weaver, Joseph R. Mendelson, Valerie J. McKenzie, Jack A. Gilbert, Rob Knight
Software Mentions: 1
Published: about 8 years ago

10.1038/ismej.2015.124

Massively parallel sequencing of single cells by epicPCR links functional genes with phylogenetic markers
Cited by: 168
Author(s): Sarah J. Spencer, Manu Tamminen, Sarah P. Preheim, Mira Guo, Adrian W. Briggs, Ilana L. Brito, David A. Weitz, Leena Pitkänen, François Vigneault, Marko Virta, Eric J. Alm
Software Mentions: 1
Published: about 9 years ago

10.1038/s41396-019-0573-y

Organohalide-respiring Desulfoluna species isolated from marine environments
Cited by: 17
Author(s): Peng Peng, Tobias Goris, Yue Lu, Bart Nijsse, Anna Burrichter, David Schleheck, Jasper J. Koehorst, Jie Liu, Detmer Sipkema, Jaap S Sinninghe Damsté, Alfons Johannes Maria Stams, Max M. Häggblom, Hauke Smidt, Siavash Atashgahi
Software Mentions: 1
Published: almost 5 years ago

10.7150/ijbs.63329

RS-5645 attenuates inflammatory cytokine storm induced by SARS-CoV-2 spike protein and LPS by modulating pulmonary microbiota
Cited by: 9
Author(s): Te Liu, Jianchao Wu, Changpeng Han, Zhangbin Gong, Giuseppe La Regina, Jiulin Chen, Fangfang Dou, Romano Silvestri, Chuan Chen, Zhihua Yu
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijerph14020130

Exploring the Impacts of Anthropogenic Disturbance on Seawater and Sediment Microbial Communities in Korean Coastal Waters Using Metagenomics Analysis
Cited by: 33
Author(s): Nam‐Il Won, Kihwan Kim, Jian Kang, Sang Rul Park, Hyuk Je Lee
Software Mentions: 1
Published: almost 8 years ago

10.1093/infdis/jiy568

Influence of Nonpolio Enteroviruses and the Bacterial Gut Microbiota on Oral Poliovirus Vaccine Response: A Study from South India
Cited by: 30
Author(s): Ira Praharaj, Edward P K Parker, Sidhartha Giri, David J. Allen, Sophia Silas, R Revathi, Saravanakumar Puthupalayam Kaliappan, Jacob John, Jasmin Helan Prasad, Beate Kampmann, Miren Iturriza‐Gómara, Nicholas C Grassly, Gagandeep Kang
Software Mentions: 1
Published: about 6 years ago

10.1016/j.jmb.2019.07.014

Ligand Binding Site Structure Shapes Folding, Assembly and Degradation of Homomeric Protein Complexes
Cited by: 5
Author(s): György Abrusán, Joseph A. Marsh
Software Mentions: 1
Published: about 5 years ago

10.1002/path.4782

<i>Propionibacterium acnes</i> overabundance and natural killer group 2 member D system activation in corpus‐dominant lymphocytic gastritis
Cited by: 39
Author(s): Ana Montalban-Arques, Philipp Wurm, Slave Trajanoski, Silvia Schauer, Sabine Kienesberger, Bettina Halwachs, Christoph Högenauer, Cord Langner, Gregor Gorkiewicz
Software Mentions: 1
Published: about 8 years ago

10.1098/rsob.170144

Constraints on lateral gene transfer in promoting fimbrial usher protein diversity and function
Cited by: 9
Author(s): Christopher J. Stubenrauch, Gordon Dougan, Trevor Lithgow, Eva Heinz
Software Mentions: 1
Published: about 7 years ago

10.1128/JVI.03391-14

Local Evolutionary Patterns of Human Respiratory Syncytial Virus Derived from Whole-Genome Sequencing
Cited by: 69
Author(s): Charles N. Agoti, James R. Otieno, Patrick K. Munywoki, Alexander G. Mwihuri, Patricia A. Cane, D. James Nokes, Paul Kellam, Matthew Cotten
Software Mentions: 1
Published: over 9 years ago

10.3390/nu13072234

Mediterranean Diet to Prevent the Development of Colon Diseases: A Meta-Analysis of Gut Microbiota Studies
Cited by: 35
Author(s): Oscar Illescas, Miriam Rodríguez‐Sosa, Manuela Gariboldi
Software Mentions: 1
Published: over 3 years ago

10.3390/nu10081105

Effects of Different Doses of Fructooligosaccharides (FOS) on the Composition of Mice Fecal Microbiota, Especially the Bifidobacterium Composition
Cited by: 61
Author(s): Bingyong Mao, Jiayu Gu, Dongyao Li, Shumao Cui, Jianxin Zhao, Hao Zhang
Software Mentions: 1
Published: over 6 years ago

Projects: cran: uclust

Papers Mentioning uclust 454