Ecosyste.ms: Papers

10.1186/s13568-019-0870-x

The differences of bacterial communities in the tissues between healthy and diseased Yesso scallop (Patinopecten yessoensis)
Cited by: 8
Author(s): Zichao Yu, Chao Liu, Qiang Fu, Guangxia Lu, Shuo Han, Lingling Wang, Linsheng Song
Software Mentions: 1
Published: about 5 years ago

10.5713/ajas.20.0137

Effect of commercially purified deoxynivalenol and zearalenone mycotoxins on microbial diversity of pig cecum contents
Cited by: 10
Author(s): Kondreddy Eswar Reddy, Minji Kim, Ki‐Hyun Kim, Sang Yun Ji, Youl-Chang Baek, Ju Lan Chun, Hyun Jung Jung, Chang Yong Choe, Hyun Jeong Lee, Minseok Kim, Sung Dae Lee
Software Mentions: 1
Published: almost 4 years ago

10.3390/ani10061048

Effects of Drinking Water Temperature and Flow Rate during Cold Season on Growth Performance, Nutrient Digestibility and Cecum Microflora of Weaned Piglets
Cited by: 4
Author(s): Zhenyu Zhang, Zeqiang Li, Hua Zhao, Xiaoling Chen, Gang Tian, Guangmang Liu, Jingyi Cai, Gang Jia
Software Mentions: 1
Published: over 4 years ago

10.1007/s00253-016-8004-8

Dechlorination of three tetrachlorobenzene isomers by contaminated harbor sludge-derived enrichment cultures follows thermodynamically favorable reactions
Cited by: 18
Author(s): Yue Lu, Javier Ramiro-García, Pieter Vandermeeren, Steffi Herrmann, Danuta Cichocka, Dirk Springael, Siavash Atashgahi, Hauke Smidt
Software Mentions: 1
Published: almost 8 years ago

10.1186/2046-9063-9-4

Bacterial diversity of the rock-water interface in an East Antarctic freshwater ecosystem, Lake Tawani(P)†
Cited by: 22
Author(s): Jonathan P. Huang, Ashit K. Swain, Robert Thacker, Rasik Ravindra, Dale T. Andersen, Asim K. Bej
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12864-017-4229-x

Optimisation of 16S rRNA gut microbiota profiling of extremely low birth weight infants
Cited by: 45
Author(s): Cristina Alcon-Giner, Shabhonam Caim, Suparna Mitra, Jennifer Ketskemety, Udo Wegmann, John Wain, Gusztav Belteki, Paul Clarke, Lindsay J. Hall
Software Mentions: 1
Published: about 7 years ago

10.1186/s12866-018-1164-1

Nitrate decreases ruminal methane production with slight changes to ruminal methanogen composition of nitrate-adapted steers
Cited by: 8
Author(s): Liping Zhao, Qingxiang Meng, Yan Li, Hao Wu, Yunlong Huo, Xinzhuang Zhang, Zhenming Zhou
Software Mentions: 1
Published: over 6 years ago

10.1186/s12866-016-0883-4

High fat diet induced atherosclerosis is accompanied with low colonic bacterial diversity and altered abundances that correlates with plaque size, plasma A-FABP and cholesterol: a pilot study of high fat diet and its intervention with Lactobacillus rhamnosus GG (LGG) or telmisartan in ApoE−/− mice
Cited by: 96
Author(s): Yee Kwan Chan, Manreetpal Singh Brar, Pirkka V. Kirjavainen, Yan Chen, Peng Jiao, Daxu Li, Frederick Chi-Ching Leung, Hani El‐Nezami
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12866-014-0311-6

The gut microbiota of Colombians differs from that of Americans, Europeans and Asians
Cited by: 163
Author(s): Juan S. Escobar, Bernadette Klotz, Beatriz E Valdes, Gloria M Agudelo
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12860-020-00297-8

Determinants of translation efficiency in the evolutionarily-divergent protist Trichomonas vaginalis
Cited by: 6
Author(s): Shuqi E. Wang, Anna Brooks, Anthony M. Poole, Augusto Simões-Barbosa
Software Mentions: 1
Published: over 4 years ago

10.1186/s12887-021-02832-8

Protocol of the Snuggle Bug/Acurrucadito Study: a longitudinal study investigating the influences of sleep-wake patterns and gut microbiome development in infancy on rapid weight gain, an early risk factor for obesity
Cited by: 3
Author(s): Megan E. Petrov, Nana Jiao, S. Panchanathan, Elizabeth Reifsnider, Dean V. Coonrod, Li Liu, Rosa Krajmalnik‐Brown, Haiwei Gu, Laurie A. Davidson, Robert S. Chapkin, Corrie M. Whisner
Software Mentions: 1
Published: about 3 years ago

10.1186/1753-6561-5-S7-P173

Interspecific discovery and expression profiling of Eucalyptusmicro RNAs by deep sequencing
Cited by: 2
Author(s): Marília de Castro Rodrigues Pappas, Alessandra Maria Moreira Reis, Laurent Farinell, Giancarlo Pasquali, Γεώργιος Παππάς, Dário Grattapaglia
Software Mentions: 1
Published: about 13 years ago

10.1186/s13104-015-1462-8

PanFP: pangenome-based functional profiles for microbial communities
Cited by: 33
Author(s): Se‐Ran Jun, Michael S. Robeson, Loren Hauser, Christopher W. Schadt, Andrey Gorin
Software Mentions: 1
Published: about 9 years ago

10.26508/lsa.201800229

Mucosa-associated microbiota drives pathogenic functions in IBD-derived intestinal iNKT cells
Cited by: 22
Author(s): Claudia Burrello, Gabriella Pellegrino, Maria Rita Giuffrè, Giulia Lovati, Ilaria Magagna, Alice Bertocchi, Fulvia Milena Cribiù, Francesca Boggio, F. Botti, Elena Trombetta, Laura Porretti, Antonio Di Sabatino, Maurizio Vecchi, María Rescigno, Flavio Caprioli, Federica Facciotti
Software Mentions: 1
Published: almost 6 years ago

10.1111/1751-7915.12052

Assessing bacterial diversity in a seawater‐processing wastewater treatment plant by 454‐pyrosequencing of the 16 <scp>S rRNA</scp> and <scp> <i>amoA</i> </scp> genes
Cited by: 29
Author(s): Olga Sánchez, Isabel Ferrera, José M. González, Jordi Mas
Software Mentions: 1
Published: over 11 years ago

10.1080/16512235.2017.1357417

Bacterial biota of women with bacterial vaginosis treated with lactoferrin: an open prospective randomized trial
Cited by: 33
Author(s): Alessandra Pino, Giuliana Giunta, Cinzia Lucia Randazzo, Salvatore Caruso, Cinzia Caggia, Antonio Cianci
Software Mentions: 1
Published: almost 8 years ago

10.1002/mbo3.245

Dynamics of marine bacterial community diversity of the coastal waters of the reefs, inlets, and wastewater outfalls of southeast <scp>F</scp> lorida
Cited by: 61
Author(s): Alexandra Mandina Campbell, Jay M. Fleisher, Christopher D. Sinigalliano, James R. White, Jose V. Lopez
Software Mentions: 1
Published: over 9 years ago

10.1002/mbo3.281

Planktonic and sedimentary bacterial diversity of Lake Sayram in summer
Cited by: 28
Author(s): Lei Fang, Chen Lei, Yuan Liu, Tao Wei, Zhongzhe Zhang, Haiying Liu, Yong Tang
Software Mentions: 1
Published: over 9 years ago

10.1186/s40168-015-0081-x

Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity
Cited by: 108
Author(s): Yan He, J. Gregory Caporaso, Xiaotao Jiang, Haoyue Sheng, Susan M. Huse, Jai Ram Rideout, Robert C. Edgar, Evguenia Kopylova, William A. Walters, Rob Knight, Hongwei Zhou
Software Mentions: 1
Published: over 9 years ago

10.1186/s40168-017-0313-3

Impact of intrapartum antimicrobial prophylaxis upon the intestinal microbiota and the prevalence of antibiotic resistance genes in vaginally delivered full-term neonates
Cited by: 150
Author(s): Alicja Nogacka, Nuria Salazar, Marta Suárez, Christian Milani, Silvia Arboleya, Gonzalo Solı́s, Nuria Fernández, Lidia Alaez, Ana María Hernández-Barranco, Marco Ventura, Miguel Gueimonde
Software Mentions: 1
Published: about 7 years ago

10.1186/2049-2618-2-22

Characterization of the nasopharyngeal microbiota in health and during rhinovirus challenge
Cited by: 104
Author(s): E. Kaitlynn Allen, Alexander F. Koeppel, J. Owen Hendley, Stephen D. Turner, Birgit Winther, Michèle M. Sale
Software Mentions: 1
Published: over 10 years ago

10.3390/microorganisms7090293

Bifidobacterial Transfer from Mother to Child as Examined by an Animal Model
Cited by: 10
Author(s): Walter Mancino, Sabrina Duranti, Leonardo Mancabelli, Giulia Longhi, Rosaria Anzalone, Christian Milani, Gabriele Andrea Lugli, Luca Carnevali, Rosario Statello, Andrea Sgoifo, Douwe van Sinderen, Marco Ventura, Francesca Turroni
Software Mentions: 1
Published: about 5 years ago

10.3390/microorganisms8030431

The Obesity-Related Gut Bacterial and Viral Dysbiosis Can Impact the Risk of Colon Cancer Development
Cited by: 21
Author(s): Giuseppina Campisciano, Nicolò de Manzini, Serena Delbue, Carolina Cason, Davide Cosola, Giuseppe Basile, Pasquale Ferrante, Manola Comar, Silvia Palmisano
Software Mentions: 1
Published: over 4 years ago

10.3390/microorganisms7110535

Uncovering Bifidobacteria via Targeted Sequencing of the Mammalian Gut Microbiota
Cited by: 9
Author(s): Gabriele Andrea Lugli, Sabrina Duranti, Christian Milani, Leonardo Mancabelli, Francesca Turroni, Douwe van Sinderen, Marco Ventura
Software Mentions: 1
Published: almost 5 years ago

10.3390/microorganisms7110523

Aided Phytoremediation to Clean Up Dioxins/Furans-Aged Contaminated Soil: correlation between microbial communities and pollutant dissipation
Cited by: 9
Author(s): Hacène Meglouli, Joël Fontaine, Anthony Verdin, Maryline Magnin-Robert, Benoît Tisserant, Mohamed Hijri, Anissa Lounès-Hadj Sahraoui
Software Mentions: 1
Published: about 5 years ago

10.3390/microorganisms7050114

The Influence of Fungicide Treatments on Mycobiota of Grapes and Its Evolution during Fermentation Evaluated by Metagenomic and Culture-Dependent Methods
Cited by: 11
Author(s): Alice Agarbati, Laura Canonico, Leonardo Mancabelli, Christian Milani, Marco Ventura, Francesca Comitini
Software Mentions: 1
Published: over 5 years ago

10.1016/j.vaccine.2017.11.031

Influence of the intestinal microbiota on the immunogenicity of oral rotavirus vaccine given to infants in south India
Cited by: 84
Author(s): Edward P K Parker, Ira Praharaj, Anna Zekavati, Robin P. Lazarus, Sidhartha Giri, Darwin J. Operario, Jie Liu, Eric R. Houpt, Miren Iturriza‐Gómara, Beate Kampmann, Jacob John, Gagandeep Kang, Nicholas C Grassly
Software Mentions: 1
Published: almost 7 years ago

10.20411/pai.v4i2.290

Four Weeks of Treatment With Rifaximin Fails to Significantly Alter Microbial Diversity in Rectal Samples of HIV-Infected Immune Non-Responders (ACTG A5286) Which May be Attributed to Rectal Swab Use
Cited by: 5
Author(s): Brett Williams, Stefan J. Green, Ronald J. Bosch, Ellen S. Chan, Jeffrey M. Jacobson, David M. Margolis, Phillip A. Engen, Alan Landay, Cara C. Wilson
Software Mentions: 1
Published: about 5 years ago

10.7717/peerj.6044

Bacterial diversity and community in Qula from the Qinghai–Tibetan Plateau in China
Cited by: 21
Author(s): Yongqiang Zhu, Yingying Cao, Yang Min, Pengcheng Wen, Lei Cao, Jun Ma, Zhongmin Zhang, Weibing Zhang
Software Mentions: 1
Published: almost 6 years ago

10.7717/peerj.5130

Short and long-term effects of a synbiotic on clinical signs, the fecal microbiome, and metabolomic profiles in healthy research cats receiving clindamycin: a randomized, controlled trial
Cited by: 16
Author(s): Jacqueline C. Whittemore, Jennifer E. Stokes, Nicole L. Laia, Joshua Price, Jan S. Suchodolski
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.3347

Metabarcoding monitoring analysis: the pros and cons of using co-extracted environmental DNA and RNA data to assess offshore oil production impacts on benthic communities
Cited by: 73
Author(s): Olivier Laroche, Susanna A. Wood, Louis A. Tremblay, Gavin Lear, Joanne I. Ellis, Xavier Pochon
Software Mentions: 1
Published: over 7 years ago

10.7717/peerj.3075

Diverse bacterial communities exist on canine skin and are impacted by cohabitation and time
Cited by: 28
Author(s): Sheila M. F. Torres, Jonathan B. Clayton, Jessica L. Danzeisen, Tonya Ward, Hu Huang, Dan Knights, Timothy J. Johnson
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pcbi.1003594

Ecological Consistency of SSU rRNA-Based Operational Taxonomic Units at a Global Scale
Cited by: 72
Author(s): Thomas Sebastian Benedikt Schmidt, João F. Matias Rodrigues, Christian von Mering
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pntd.0003791

Bacterial Factors Associated with Lethal Outcome of Enteropathogenic Escherichia coli Infection: Genomic Case-Control Studies
Cited by: 21
Author(s): Michael S. Donnenberg, Tracy H. Hazen, Tamer H. Farag, Sandra Panchalingam, Martín Antonio, Ahmed Hossain, Inácio Mandomando, John B. Ochieng, Thandavarayan Ramamurthy, Boubou Tamboura, Anita K. M. Zaidi, Myron M. Levine, Karen L. Kotloff, David A. Rasko, James P. Nataro
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0155620

Dietary Regulation of the Gut Microbiota Engineered by a Minimal Defined Bacterial Consortium
Cited by: 14
Author(s): Ting Shen, Christel Chehoud, Josephine Ni, Evelyn Hsu, Ying Yu Chen, Aubrey Bailey, Alice Laughlin, Kyle Bittinger, Frederic D. Bushman, Gary D. Wu
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0223019

Neurobehavioral dysfunction in non-alcoholic steatohepatitis is associated with hyperammonemia, gut dysbiosis, and metabolic and functional brain regional deficits
Cited by: 40
Author(s): Sara G. Higarza, Silvia Arboleya, Miguel Gueimonde, Eneritz Gómez-Lázaro, Jorge L. Árias, Natalia Arias
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0223238

Positive effect of an electrolyzed reduced water on gut permeability, fecal microbiota and liver in an animal model of Parkinson’s disease
Cited by: 19
Author(s): Laura Bordoni, Rosita Gabbianelli, Donatella Fedeli, Dennis Fiorini, Ina Bergheim, Huangzhao Wei, Lisa Marinelli, Antonio Di Stefano, Cinzia Nasuti
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0124504

Transcriptional Modulation of Intestinal Innate Defense/Inflammation Genes by Preterm Infant Microbiota in a Humanized Gnotobiotic Mouse Model
Cited by: 29
Author(s): Lei Lü, Yueyue Yu, Yanjie Guo, Yunwei Wang, Eugene B. Chang, Erika C. Claud
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0127721

Determining Microeukaryotic Plankton Community around Xiamen Island, Southeast China, Using Illumina MiSeq and PCR-DGGE Techniques
Cited by: 27
Author(s): Lingyu Yu, Wenjing Zhang, Lemian Liu, Jun Yang
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0054783

Comparison of the Distal Gut Microbiota from People and Animals in Africa
Cited by: 61
Author(s): Richard J. Ellis, Kenneth D. Bruce, Claire Jenkins, J. Russell Stothard, Lilly Ajarova, Lawrence Mugisha, Mark Viney
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0092297

Mycoplasma salivarium as a Dominant Coloniser of Fanconi Anaemia Associated Oral Carcinoma
Cited by: 28
Author(s): Birgit Henrich, Madis Rumming, Alexander Sczyrba, Eunike Velleuer, Ralf Dietrich, Wolfgang Gerlach, Michael Gombert, Sebastian Rahn, Jens Stoye, Arndt Borkhardt, Ute Fischer
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0157529

Seasonality and Locality Affect the Diversity of Anopheles gambiae and Anopheles coluzzii Midgut Microbiota from Ghana
Cited by: 54
Author(s): Jewelna Akorli, Mathilde Gendrin, Nana Adjoa Pels, Dorothy Yeboah-Manu, George K. Christophides, Marcus D. Wilson
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0099996

Influence of Fasting during Moult on the Faecal Microbiota of Penguins
Cited by: 39
Author(s): Meagan Dewar, John P. Y. Arnould, Lutz Krause, Phil Trathan, Peter Dann, Stuart Smith
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0094249

Analysis, Optimization and Verification of Illumina-Generated 16S rRNA Gene Amplicon Surveys
Cited by: 273
Author(s): Michael C. Nelson, Hilary G. Morrison, Jacquelynn Benjamino, Sharon L. Grim, Joerg Graf
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0061218

A Cross-Taxon Analysis of Insect-Associated Bacterial Diversity
Cited by: 135
Author(s): Ryan Jones, Leticia Gonzales Sanchez, Noah Fierer
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0129174

Rumen Microbiome from Steers Differing in Feed Efficiency
Cited by: 246
Author(s): Phillip R. Myer, Timothy P. L. Smith, John W. Wells, L. A. Kuehn, H. C. Freetly
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0175903

Bacterial diversity of bacteriomes and organs of reproductive, digestive and excretory systems in two cicada species (Hemiptera: Cicadidae)
Cited by: 15
Author(s): Zhou Zheng, Dandan Wang, Hong He, Cong Wang
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0036957

Diversity of Bifidobacteria within the Infant Gut Microbiota
Cited by: 489
Author(s): Francesca Turroni, Clelia Peano, Daniel Antony Pass, Elena Foroni, Marco Severgnini, Marcus J. Claesson, Colm Kerr, Jonathan Hourihane, Deirdre M. Murray, Fabio Fuligni, Miguel Gueimonde, Abelardo Margollés, Gianluca De Bellis, Paul W. O’Toole, Douwe van Sinderen, Julian R. Marchesi, Marco Ventura
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0047330

Habitat-Associated Phylogenetic Community Patterns of Microbial Ammonia Oxidizers
Cited by: 46
Author(s): Antoni Fernández-Guerra, Emilio O. Casamayor
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0146406

Resistant Starch Alters the Microbiota-Gut Brain Axis: Implications for Dietary Modulation of Behavior
Cited by: 42
Author(s): Mark Lyte, Ashley Chapel, Joshua M. Lyte, Yongfeng Ai, Alexandra Proctor, Jay‐lin Jane, Gregory J. Phillips
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0174069

Relationship of microbial communities and suppressiveness of Trichoderma fortified composts for pepper seedlings infected by Phytophthora nicotianae
Cited by: 31
Author(s): Margarita Ros, Iuliana Răut, Ana B Santísima-Trinidad, José Antonio Pascual
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0134615

Microbial Community Response of an Organohalide Respiring Enrichment Culture to Permanganate Oxidation
Cited by: 16
Author(s): Nora B. Sutton, Siavash Atashgahi, Edoardo Saccenti, J.T.C. Grotenhuis, Hauke Smidt, H.H.M. Rijnaarts
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0068739

Assessing the Fecal Microbiota: An Optimized Ion Torrent 16S rRNA Gene-Based Analysis Protocol
Cited by: 244
Author(s): Christian Milani, Arancha Hevia, Elena Foroni, Sabrina Duranti, Francesca Turroni, Gabriele Andrea Lugli, Borja Sánchez, Rebeca Martín, Miguel Gueimonde, Douwe van Sinderen, Abelardo Margollés, Marco Ventura
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0212593

The fecal, oral, and skin microbiota of children with Chagas disease treated with benznidazole
Cited by: 18
Author(s): Carlos Robello, Doris Patricia Maldonado, Anna Hevia, Marina Hoashi, Paola Frattaroli, Valentina Montacutti, Adriana Heguy, Igor Dolgalev, Maricruz Mojica, Gregorio Iraola, María Gloria Domínguez-Bello
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0123990

Bacterial Community Associated with the Intestinal Tract of Chinese Mitten Crab (Eriocheir sinensis) Farmed in Lake Tai, China
Cited by: 42
Author(s): Xiaobing Chen, Panpan Di, Hongming Wang, Bailin Li, Yingjie Pan, Shuling Yan, Yongjie Wang
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0141057

Flea-Associated Bacterial Communities across an Environmental Transect in a Plague-Endemic Region of Uganda
Cited by: 14
Author(s): Ryan Jones, Jeff N. Borchert, Rebecca J. Eisen, Katherine MacMillan, Karen A. Boegler, Kenneth L. Gage
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0127462

Gut Microbiota Dynamics during Dietary Shift in Eastern African Cichlid Fishes
Cited by: 92
Author(s): Laura Baldo, Joan Lluís Riera, Ave Tooming‐Klunderud, M. Mar Albà, Walter Salzburger
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0104511

A Systems Biology Approach Investigating the Effect of Probiotics on the Vaginal Microbiome and Host Responses in a Double Blind, Placebo-Controlled Clinical Trial of Post-Menopausal Women
Cited by: 51
Author(s): Jordan E. Bisanz, Shannon Seney, Amy McMillan, Rebecca Vongsa, David W. Koenig, Lung Fai Wong, Barbara Dvoracek, Gregory B. Gloor, Mark W. Sumarah, Brenda Ford, Dorli Herman, Jeremy P. Burton, Gregor Reid
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0077733

The Living Dead: Bacterial Community Structure of a Cadaver at the Onset and End of the Bloat Stage of Decomposition
Cited by: 182
Author(s): Embriette R. Hyde, Daniel Haarmann, Aaron M. Lynne, Sibyl R. Bucheli, Joseph F. Petrosino
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0049785

OTU Analysis Using Metagenomic Shotgun Sequencing Data
Cited by: 22
Author(s): Xiaolin Hao, Ting Chen
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0069621

Long-Term Temporal Analysis of the Human Fecal Microbiota Revealed a Stable Core of Dominant Bacterial Species
Cited by: 144
Author(s): Inés Martínez, Catherine E. Muller, Jens Walter
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0146689

Impact of Organic Carbon Electron Donors on Microbial Community Development under Iron- and Sulfate-Reducing Conditions
Cited by: 31
Author(s): Man Jae Kwon, Edward J. O’Loughlin, Maxim I. Boyanov, Jennifer M. Brulc, Eric R. Johnston, Kenneth M. Kemner, Dionysios A. Antonopoulos
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0067480

The Ecology of Microbial Communities Associated with Macrocystis pyrifera
Cited by: 58
Author(s): Vanessa K. Michelou, J. Gregory Caporaso, Rob Knight, Stephen R. Palumbi
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0041250

Independent Studies Using Deep Sequencing Resolve the Same Set of Core Bacterial Species Dominating Gut Communities of Honey Bees
Cited by: 105
Author(s): Zakee L. Sabree, Allison K. Hansen, Nancy A. Moran
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0073140

Impact of Ileocecal Resection and Concomitant Antibiotics on the Microbiome of the Murine Jejunum and Colon
Cited by: 52
Author(s): Anthony A. Devine, Antonio González, K. Elizabeth Speck, Rob Knight, Michael A. Helmrath, P. Kay Lund, M. Andrea Azcárate-Peril
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0256970

No tillage and residue mulching method on bacterial community diversity regulation in a black soil region of Northeastern China
Cited by: 15
Author(s): Lijun Cai, Zhang Guo, Jingtao Zhang, Zhongtao Gai, Jingqi Liu, Qingying Meng, Xiaohu Liu
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pone.0200974

Delayed differentiation of vaginal and uterine microbiomes in dairy cows developing postpartum endometritis
Cited by: 49
Author(s): Raúl Miranda-CasoLuengo, Junnan Lu, E. J. Williams, Aleksandra A. Miranda-CasoLuengo, Stephen D. Carrington, A.C.O. Evans, Wim G. Meijer
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0071301

Highly Heterogeneous Bacterial Communities Associated with the South China Sea Reef Corals Porites lutea, Galaxea fascicularis and Acropora millepora
Cited by: 38
Author(s): Jie Li, Qi Chen, Si Zhang, Hui Huang, Jian Yang, Xin Peng Tian, Long Li
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0076724

Ultradeep 16S rRNA Sequencing Analysis of Geographically Similar but Diverse Unexplored Marine Samples Reveal Varied Bacterial Community Composition
Cited by: 59
Author(s): Chairmandurai Aravindraja, Dharmaprakash Viszwapriya, Shunmugiah Karutha Pandian
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0105718

Microbial Communities of Three Sympatric Australian Stingless Bee Species
Cited by: 50
Author(s): Sara D. Leonhardt, Martin Kaltenpoth
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0152183

Effects of Host Plant Factors on the Bacterial Communities Associated with Two Whitefly Sibling Species
Cited by: 14
Author(s): Mingming Su, Lei Guo, Yun-Li Tao, Youjun Zhang, Fanghao Wan, Dong Chu
Software Mentions: 1
Published: over 8 years ago

10.1007/s00784-020-03582-0

High-resolution taxonomic examination of the oral microbiome after oil pulling with standardized sunflower seed oil and healthy participants: a pilot study
Cited by: 8
Author(s): Tim Griessl, Silke Zechel-Gran, Stefan Olejniczak, Markus Weigel, Torsten Hain, Eugen Domann
Software Mentions: 1
Published: about 4 years ago

10.1002/ece3.512

Is RAD-seq suitable for phylogenetic inference? An in silico assessment and optimization
Cited by: 148
Author(s): Marie‐Louise Cariou, Laurent Duret, Sylvain Charlat
Software Mentions: 1
Published: over 11 years ago

10.1111/1462-2920.14886

Methane oxidation in anoxic lake water stimulated by nitrate and sulfate addition
Cited by: 51
Author(s): Sigrid van Grinsven, Jaap S Sinninghe Damsté, Alejandro Abdala Asbun, Julia C. Engelmann, John Harrison, Laura Villanueva
Software Mentions: 1
Published: almost 5 years ago

10.1007/s10096-019-03520-3

Understanding and overcoming the pitfalls and biases of next-generation sequencing (NGS) methods for use in the routine clinical microbiological diagnostic laboratory
Cited by: 136
Author(s): Stefan A. Boers, Ruud Jansen, John P. Hays
Software Mentions: 1
Published: over 5 years ago

10.1007/s00394-021-02523-1

Effect of low-iron micronutrient powder (MNP) on the composition of gut microbiota of Bangladeshi children in a high-iron groundwater setting: a randomized controlled trial
Cited by: 9
Author(s): Sabuktagin Rahman, Guus A. M. Kortman, Jos Boekhorst, Patricia Lee, Mohammad Rezwan Khan, Faruk Ahmed
Software Mentions: 1
Published: over 3 years ago

10.1155/2019/2710587

Long-Term Potable Effects of Alkalescent Mineral Water on Intestinal Microbiota Shift and Physical Conditioning
Cited by: 6
Author(s): Takaaki Yahiro, Takao Hara, Takashi Matsumoto, Emi Ikebe, Nichole Fife-Koshinomi, Zhaojun Xu, Masafumi Ito, Hidekatsu Iha, Masafumi Ito
Software Mentions: 1
Published: almost 5 years ago

10.3390/foods9070930

Functional Microbiota for Polypeptide Degradation during Hypertonic Moromi-Fermentation of Pixian Broad Bean Paste
Cited by: 12
Author(s): Lijie Zhang, Yida Bao, Haifeng Chen, Jiaquan Huang, Yan Xu
Software Mentions: 1
Published: over 4 years ago

10.3390/foods8020072

Exploring the Brine Microbiota of a Traditional Norwegian Fermented Fish Product (Rakfisk) from Six Different Producers during Two Consecutive Seasonal Productions
Cited by: 20
Author(s): Guro alette Bjerke, Knut Rudi, Ekaterina Avershina, Birgitte Moen, Henning Blom, Lars Axelsson
Software Mentions: 1
Published: over 5 years ago

10.3389/fbioe.2021.695306

Diverse Profile of Fermentation Byproducts From Thin Stillage
Cited by: 14
Author(s): Nathaniel W. Fortney, Nathaniel J. Hanson, Paula Rúbia Ferreira Rosa, Timothy J. Donohue, Daniel R. Noguera
Software Mentions: 1
Published: over 3 years ago

10.3389/fcimb.2020.00423

Lactobacillus rhamnosus Strains Relieve Loperamide-Induced Constipation via Different Pathways Independent of Short-Chain Fatty Acids
Cited by: 30
Author(s): Gang Wang, Shurong Yang, Shanshan Sun, Qian Si, Linlin Wang, Qiuxiang Zhang, Guangyong Wu, Jianxin Zhao, Hao Zhang
Software Mentions: 1
Published: about 4 years ago

10.3389/fmicb.2019.03041

Rates and Microbial Players of Iron-Driven Anaerobic Oxidation of Methane in Methanic Marine Sediments
Cited by: 48
Author(s): David A. Aromokeye, Ajinkya Kulkarni, Marcus Elvert, Gunter Wegener, Susann Henkel, Sarah Coffinet, Thilo Eickhorst, Oluwatobi Emmanuel Oni, Tim Richter-Heitmann, Annika Schnakenberg, Heidi Taubner, Lea C Wunder, Xiuran Yin, Qingzeng Zhu, Kai‐Uwe Hinrichs, Sabine Kasten, Michael W. Friedrich
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmicb.2019.02451

The Vaginal Community State Types Microbiome-Immune Network as Key Factor for Bacterial Vaginosis and Aerobic Vaginitis
Cited by: 55
Author(s): Francesco De Seta, Giuseppina Campisciano, Nunzia Zanotta, Giuseppe Ricci, Manola Comar
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2012.00309

Microbial Biogeography of Arctic Streams: Exploring Influences of Lithology and Habitat
Cited by: 29
Author(s): Julia R. Larouche, William B. Bowden, Rosanna Giordano, Michael B. Flinn, Byron C. Crump
Software Mentions: 1
Published: almost 13 years ago

10.3389/fmicb.2016.00145

The Development of a Novel qPCR Assay-Set for Identifying Fecal Contamination Originating from Domestic Fowls and Waterfowl in Israel
Cited by: 13
Author(s): Shoshanit Ohad, Shifra Ben‐Dor, Jaime Prilusky, Valeria Kravitz, Bareket Dassa, Vered Chalifa‐Caspi, Yechezkel Kashi, Efrat Rorman
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2018.00159

Metagenomic Profiling of Soil Microbes to Mine Salt Stress Tolerance Genes
Cited by: 84
Author(s): Vasim Ahmed, Manoj Kumar Verma, Shashank Gupta, Vibha Mandhan, Nar Singh Chauhan
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2016.00846

Fungal and Prokaryotic Activities in the Marine Subsurface Biosphere at Peru Margin and Canterbury Basin Inferred from RNA-Based Analyses and Microscopy
Cited by: 47
Author(s): Maria Pachiadaki, Vanessa Rédou, David J. Beaudoin, Gaëtan Burgaud, Virginia P. Edgcomb
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2017.00197

Impact of Westernized Diet on Gut Microbiota in Children on Leyte Island
Cited by: 100
Author(s): Jiro Nakayama, Azusa Yamamoto, Ladie A. Palermo-Conde, Kanako Higashi, Kenji Sonomoto, Julie Tan, Yuan Kun Lee
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2017.01881

Adaptation of Methanogenic Inocula to Anaerobic Digestion of Maize Silage
Cited by: 41
Author(s): Martyna Wojcieszak, Adam Pyzik, Krzysztof Poszytek, Paweł S. Krawczyk, Adam Sobczak, Leszek Lipiński, O. Roubinek, J. Palige, Aleksandra Skłodowska, Łukasz Drewniak
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2015.00858

Microbial mineral colonization across a subsurface redox transition zone
Cited by: 18
Author(s): Brandon J. Converse, James P. McKinley, Charles T. Resch, Eric E. Roden
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2016.01284

Microbial Diversity in Sediment Ecosystems (Evaporites Domes, Microbial Mats, and Crusts) of Hypersaline Laguna Tebenquiche, Salar de Atacama, Chile
Cited by: 60
Author(s): Ana Beatriz Fernández, María Cecilia Rasuk, Pieter T. Visscher, Manuel Contreras, Fernando Novoa, Daniel Gustavo Poiré, Molly M. Patterson, António Ventosa, Marı́a Eugenia Farı́as
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2021.713347

Prokaryotic and Eukaryotic Fecal Microbiota in Irritable Bowel Syndrome Patients and Healthy Individuals Colonized With Blastocystis
Cited by: 8
Author(s): Céline Nourrisson, Julien Scanzi, Julie Brunet, Frédéric Delbac, Michel Dapoigny, Philippe Poirier
Software Mentions: 1
Published: about 3 years ago

10.3389/fmicb.2018.00474

Response of Nitrifier and Denitrifier Abundance and Microbial Community Structure to Experimental Warming in an Agricultural Ecosystem
Cited by: 31
Author(s): Tatoba R. Waghmode, Shuaimin Chen, Jiazhen Li, Run‐Cang Sun, Binbin Liu, Chunsheng Hu
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2015.00091

Agroforestry leads to shifts within the gammaproteobacterial microbiome of banana plants cultivated in Central America
Cited by: 26
Author(s): Martina Köberl, Miguel Dita, Alfonso Martinuz, Charles Staver, Gabriele Berg
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2020.00715

Impact of Electron Acceptor Availability on Methane-Influenced Microorganisms in an Enrichment Culture Obtained From a Stratified Lake
Cited by: 16
Author(s): Sigrid van Grinsven, Jaap S Sinninghe Damsté, John Harrison, Laura Villanueva
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2014.00327

Pyrosequencing detects human and animal pathogenic taxa in the grapevine endosphere
Cited by: 23
Author(s): Sohail Yousaf, Daniela Bulgari, Alessandro Bergna, Michael Pancher, F. Quaglino, P. Casati, A. Campisano
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2017.00291

Bacterial Community and PHB-Accumulating Bacteria Associated with the Wall and Specialized Niches of the Hindgut of the Forest Cockchafer (Melolontha hippocastani)
Cited by: 19
Author(s): Pol Alonso-Pernas, Erika M Arias-Cordero, Alexey L. Novoselov, Christina Ebert, Jürgen Rybak, Martin Kaltenpoth, Martin Westermann, Ute Neugebauer, Wilhelm Boland
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2017.00965

Bacterial Composition and Diversity in Breast Milk Samples from Mothers Living in Taiwan and Mainland China
Cited by: 101
Author(s): Shiao Wen Li, Koichi Watanabe, Ching–Sheng Hsu, Shiou Huei Chao, Zheng Hua Yang, Yongjun Lin, Chun Chiang Chen, Yueqian Cao, Hsuan‐Cheng Huang, Chia Hui Chang, Yao‐Chou Tsai
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2016.01747

Genotyping by PCR and High-Throughput Sequencing of Commercial Probiotic Products Reveals Composition Biases
Cited by: 70
Author(s): Wesley Morovic, Ashley A. Hibberd, Bryan Zabel, Rodolphe Barrangou, Buffy Stahl
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2015.00960

Spatial and temporal dynamics of virus occurrence in two freshwater lakes captured through metagenomic analysis
Cited by: 64
Author(s): Mahi M. Mohiuddin, Herb E. Schellhorn
Software Mentions: 1
Published: about 9 years ago