Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: tcl
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/tcl
Testing in Conditional Likelihood Context
3 versions
Latest release: over 1 year ago
248 downloads last month
Papers Mentioning tcl 27
10.1371/journal.pone.0211608
Managing genomic variant calling workflows with Swift/TCited by: 7
Author(s): Azza E. Ahmed, Jacob R Heldenbrand, Yan W. Asmann, Faisal M. Fadlelmola, Daniel S. Katz, Katherine Kendig, Matthew Kendzior, Tiffany Li, Yingxue Ren, Elliott Rodriguez, Matthew Weber, Justin M. Wozniak, Jennie Zermeno, Liudmila Sergeevna Mainzer
Software Mentions: 6
Published: over 5 years ago
10.3389/fchem.2020.598710
Discovery of 5,5′-Methylenedi-2,3-Cresotic Acid as a Potent Inhibitor of the Chemotactic Activity of the HMGB1·CXCL12 Heterocomplex Using Virtual Screening and NMR ValidationCited by: 3
Author(s): Federica De Leo, Giacomo Quilici, Francesco De Marchis, Malisa Vittoria Mantonico, Marco E. Bianchi, Giovanna Musco
Software Mentions: 3
Published: almost 4 years ago
10.1038/s41598-020-80769-1
Automation of absolute protein-ligand binding free energy calculations for docking refinement and compound evaluationCited by: 41
Author(s): Germano Heinzelmann, Michael K. Gilson
Software Mentions: 3
Published: almost 4 years ago
10.1371/journal.pone.0200621
The fast contribution of visual-proprioceptive discrepancy to reach aftereffects and proprioceptive recalibrationCited by: 22
Author(s): Jennifer E. Ruttle, Bernard Marius ‘t Hart, Denise Y. P. Henriques
Software Mentions: 3
Published: over 6 years ago
10.1074/jbc.M116.770271
Nanostructure and stability of calcitonin amyloidsCited by: 14
Author(s): Federica Rigoldi, Pierangelo Metrangolo, Alberto Redaelli, Alfonso Gautieri
Software Mentions: 3
Published: over 7 years ago
10.1186/1471-2105-10-41
STAMP: Extensions to the STADEN sequence analysis package for high throughput interactive microsatellite marker designCited by: 37
Author(s): Lars Kraemer, Bánk Beszteri, Steffi Gäbler‐Schwarz, Christoph Held, Florian Leese, Christoph Mayer, Kevin Pöhlmann, Stephan Frickenhaus
Software Mentions: 3
Published: almost 16 years ago
10.1186/s12915-021-01102-4
High-resolution structure of the amino acid transporter AdiC reveals insights into the role of water molecules and networks in oligomerization and substrate bindingCited by: 9
Author(s): Hüseyin İlgü, Jean-Marc Jeckelmann, David Kalbermatter, Zöhre Ucurum, Thomas Lemmin, Dimitrios Fotiadis
Software Mentions: 3
Published: about 3 years ago
10.3389/fchem.2020.00107
Exploring the RNA-Recognition Mechanism Using Supervised Molecular Dynamics (SuMD) Simulations: Toward a Rational Design for Ribonucleic-Targeting Molecules?Cited by: 14
Author(s): Maicol Bissaro, Mattia Sturlese, Stefano Moro
Software Mentions: 3
Published: over 4 years ago
10.1007/s00232-020-00152-z
Phosphatidylglyerol Lipid Binding at the Active Site of an Intramembrane ProteaseCited by: 6
Author(s): Ana‐Nicoleta Bondar
Software Mentions: 2
Published: almost 4 years ago
10.1186/1471-2466-7-15
Software for interpreting cardiopulmonary exercise testsCited by: 7
Author(s): Robert Ross, David B. Corry
Software Mentions: 2
Published: about 17 years ago
10.3390/biom11070996
Crystal Structure Reveals the Full Ras–Raf Interface and Advances Mechanistic Understanding of Raf ActivationCited by: 28
Author(s): Trinity Cookis, Carla Mattos
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0207899
Conformational sampling of CpxA: Connecting HAMP motions to the histidine kinase functionCited by: 1
Author(s): Nathalie Duclert-Savatier, Guillaume Bouvier, Michaël Nilges, Thérèse E. Malliavin
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pone.0178519
How do SMA-linked mutations of SMN1 lead to structural/functional deficiency of the SMA protein?Cited by: 14
Author(s): Wei Li
Software Mentions: 2
Published: over 7 years ago
10.3389/fmolb.2020.00162
The Voltage-Dependent Deactivation of the KvAP Channel Involves the Breakage of Its S4 HelixCited by: 2
Author(s): Olivier Bignucolo, Simon Bernèche
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0052289
The Endocranial Anatomy of Therizinosauria and Its Implications for Sensory and Cognitive FunctionCited by: 67
Author(s): Stephan Lautenschlager, Emily J. Rayfield, Perle Altangerel, Lindsay E. Zanno, Lawrence M. Witmer
Software Mentions: 1
Published: almost 12 years ago
10.1080/19336950.2019.1676367
The influence of membrane bilayer thickness on KcsA channel activityCited by: 12
Author(s): Karen M. Callahan, Benoit Mondou, Louis J. Sasseville, Jean-Louis Schwartz, Nazzareno D’Avanzo
Software Mentions: 1
Published: almost 6 years ago
10.1093/database/baw007
2P2Idb v2: update of a structural database dedicated to orthosteric modulation of protein–protein interactionsCited by: 59
Author(s): Marie Jeanne Basse, S. Betzi, Xavier Morelli, Philippe Roché
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pone.0069882
Schiff Base Switch II Precedes the Retinal Thermal Isomerization in the Photocycle of BacteriorhodopsinCited by: 6
Author(s): Ting Wang, Marc T. Facciotti, Yong Duan
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pcbi.0010062
The Association of Tetrameric Acetylcholinesterase with ColQ Tail: A Block Normal Mode AnalysisCited by: 16
Author(s): Deqiang Zhang, J. Andrew McCammon
Software Mentions: 1
Published: almost 19 years ago
10.3389/fmolb.2020.00058
Structural and Functional Analysis of Gly212 Mutants Reveals the Importance of Intersubunit Interactions in ASIC1a Channel FunctionCited by: 7
Author(s): Olivier Bignucolo, Sabrina Vullo, Nicolas Ambrosio, Ivan Gautschi, Stephan Kellenberger
Software Mentions: 1
Published: over 4 years ago
10.3389/fmolb.2019.00036
Machine Learning Analysis of τRAMD Trajectories to Decipher Molecular Determinants of Drug-Target Residence TimesCited by: 33
Author(s): Daria B. Kokh, Tom L. Kaufmann, Bastian Kister, Rebecca C. Wade
Software Mentions: 1
Published: over 5 years ago
10.3934/Neuroscience.2018.2.132
Visual encoding of partial unknown shape boundariesCited by: 5
Author(s): Hannah O. Nordberg, Michael J. Hautus, Ernest Greene
Software Mentions: 1
Published: almost 7 years ago
10.3390/biomedicines8070195
Coarse-Grained Models of RNA Nanotubes for Large Time Scale Studies in Biomedical ApplicationsCited by: 5
Author(s): Shyam Badu, Sanjay Prabhakar, Roderick Melnik
Software Mentions: 1
Published: over 4 years ago
10.1038/srep23063
Accurate Determination of Conformational Transitions in Oligomeric Membrane ProteinsCited by: 11
Author(s): Máximo Sanz-Hernández, Vitaly V. Vostrikov, Gianluigi Veglia, Alfonso De Simone
Software Mentions: 1
Published: over 8 years ago
10.1007/s10439-020-02715-6
Atomistic Basis of Microtubule Dynamic Instability Assessed Via Multiscale ModelingCited by: 4
Author(s): Mahya Hemmat, David J. Odde
Software Mentions: 1
Published: almost 4 years ago
10.3390/s18092899
A Clustering WSN Routing Protocol Based on k-d Tree AlgorithmCited by: 38
Author(s): John Anzola, Jordán Pascual, Giovanny Mauricio Tarazona Bermúdez, Rubén González Crespo
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0183822
Pulling MscL open via N-terminal and TM1 helices: A computational study towards engineering an MscL nanovalveCited by: 29
Author(s): Adam D. Martinac, Navid Bavi, Omid Bavi, Boris Martinac
Software Mentions: 1
Published: about 7 years ago