Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: spls

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/spls

Sparse Partial Least Squares (SPLS) Regression and Classification
12 versions
Latest release: over 5 years ago
15 dependent packages
4,756 downloads last month

Papers Mentioning spls 23

mixOmics: An R package for ‘omics feature selection and multiple data integration
Cited by: 1,902
Author(s): Florian Rohart, Benoît Gautier, Amrit Singh, Kim‐Anh Lê Cao
Software Mentions: 29
Published: about 7 years ago

10.1371/journal.pone.0018850

Multiplexed Immunoassay Panel Identifies Novel CSF Biomarkers for Alzheimer's Disease Diagnosis and Prognosis
Cited by: 199
Author(s): Rebecca Craig‐Schapiro, Max Kühn, Chengjie Xiong, Eve H. Pickering, Jingxia Liu, Thomas P. Misko, Richard J. Perrin, Kelly R. Bales, Holly Soares, Anne M. Fagan, David M. Holtzman
Software Mentions: 15
Published: over 13 years ago

10.1038/s41598-018-36887-y

Regulation of volatile and non-volatile pheromone attractants depends upon male social status
Cited by: 25
Author(s): Michaela Thoß, Kenneth C. Luzynski, Viktoria M. Enk, Ebrahim Razzazi-Fazeli, Jae Kwak, Irene Ortner, Dustin J. Penn
Software Mentions: 6
Published: almost 6 years ago

10.1186/s13062-018-0213-x

Predicting survival times for neuroblastoma patients using RNA-seq expression profiles
Cited by: 15
Author(s): Tyler Grimes, Alejandro R. Walker, Susmita Datta
Software Mentions: 6
Published: almost 7 years ago

10.3389/fmolb.2016.00026

biosigner: A New Method for the Discovery of Significant Molecular Signatures from Omics Data
Cited by: 46
Author(s): Philippe Rinaudo, Samia Boudah, Christophe Junot, Etienne Thévenot
Software Mentions: 6
Published: over 8 years ago

10.3389/fmicb.2017.01563

Role of Age-Related Shifts in Rumen Bacteria and Methanogens in Methane Production in Cattle
Cited by: 28
Author(s): Chong Liu, Qinghui Meng, Yongxing Chen, Mengsi Xu, Min Shen, Rui Gao, Shangquan Gan
Software Mentions: 6
Published: over 7 years ago

10.3389/fgene.2018.00194

Matrix Integrative Analysis (MIA) of Multiple Genomic Data for Modular Patterns
Cited by: 3
Author(s): Jinyu Chen, Shihua Zhang
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0202970

Effects of alpha-(1,2)-fucosyltransferase genotype variants on plasma metabolome, immune responses and gastrointestinal bacterial enumeration of pigs pre- and post-weaning
Cited by: 13
Author(s): Ann Sofie Riis Poulsen, Diana Luise, Mihai Victor Curtasu, Sugiharto Sugiharto, Nuria Canibe, Paolo Trevisi, Charlotte Lauridsen
Software Mentions: 5
Published: about 6 years ago

10.1186/s12859-018-2149-7

Ensemble outlier detection and gene selection in triple-negative breast cancer data
Cited by: 25
Author(s): Marta B. Lopes, André Veríssimo, Eunice Carrasquinha, Sandra Casimiro, Niko Beerenwinkel, Susana Vinga
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0041694

Multiple Regression Methods Show Great Potential for Rare Variant Association Tests
Cited by: 20
Author(s): Changjiang Xu, Martin Ladouceur, Zari Dastani, J. Brent Richards, Antonio Ciampi, Celia M.T. Greenwood
Software Mentions: 5
Published: over 12 years ago

10.1186/s40168-020-00803-2

Characterization of antibiotic resistance and host-microbiome interactions in the human upper respiratory tract during influenza infection
Cited by: 38
Author(s): Lingdi Zhang, Christian V. Forst, Aubree Gordon, Gabrielle Gussin, Adam Geber, Porfirio J. Fernandez, Tao Ding, Lauren Lashua, Minghui Wang, Ángel Balmaseda, Richard Bonneau, Bin Zhang, Elodie Ghedin
Software Mentions: 4
Published: over 4 years ago

10.1289/EHP172

A Systematic Comparison of Linear Regression–Based Statistical Methods to Assess Exposome-Health Associations
Cited by: 143
Author(s): Lydiane Agier, Lützen Portengen, Marc Chadeau‐Hyam, Xavier Basagaña, Lise Giorgis-Allemand, Valérie Siroux, Oliver Robinson, Jelle Vlaanderen, Juan R. González, Mark Nieuwenhuijsen, Paolo Víneis, Martine Vrijheid, Rémy Slama, Roel Vermeulen
Software Mentions: 4
Published: almost 8 years ago

10.1186/1471-2288-12-107

Refining developmental coordination disorder subtyping with multivariate statistical methods
Cited by: 20
Author(s): Christophe Lalanne, Bruno Falissard, Bernard Golse, Laurence Vaivre‐Douret
Software Mentions: 4
Published: over 12 years ago

10.1371/journal.pntd.0002880

Helminth Colonization Is Associated with Increased Diversity of the Gut Microbiota
Cited by: 274
Author(s): Soo Ching Lee, Mei Tang, Yvonne A. L. Lim, Seow Huey Choy, Zachary Kurtz, Laura M. Cox, Uma Mahesh Gundra, Ilseung Cho, Richard Bonneau, Martin J. Blaser, Kek Heng Chua, P’ng Loke
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pone.0119265

Multimarker Proteomic Profiling for the Prediction of Cardiovascular Mortality in Patients with Chronic Heart Failure
Cited by: 14
Author(s): Gilles Lemesle, Florence Maury, Olivia Beseme, Lionel Ovart, Philippe Amouyel, Nicolas Lamblin, Pascal de Groote, Christophe Bauters, Florence Pinet
Software Mentions: 4
Published: over 9 years ago

10.1038/s41598-021-99028-y

The value of gut microbiota to predict feed efficiency and growth of rabbits under different feeding regimes
Cited by: 10
Author(s): María Velasco-Galilea, M. Piles, Yuliaxis Ramayo-Caldas, Juan Pablo Sánchez
Software Mentions: 3
Published: about 3 years ago

10.1186/s12859-018-2114-5

Obtaining insights from high-dimensional data: sparse principal covariates regression
Cited by: 10
Author(s): Katrijn Van Deun, Elise Anne Victoire Crompvoets, Eva Ceulemans
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0199649

A comparative analysis of label-free liquid chromatography-mass spectrometry liver proteomic profiles highlights metabolic differences between pig breeds
Cited by: 13
Author(s): Samuele Bovo, Alessio Di Luca, Giuliano Galimberti, Stefania Dall’Olio, Luca Fontanesi
Software Mentions: 3
Published: about 6 years ago

10.3390/cells8060583

Mitochondrial Transcriptome Control and Intercompartment Cross-Talk During Plant Development
Cited by: 6
Author(s): Adnan Khan Niazi, Étienne Delannoy, Rana Khalid Iqbal, Daria Mileshina, Romain Val, Marta Gabryelska, Eliza Wyszko, Ludivine Soubigou‐Taconnat, Maciej Szymański, Jan Barciszewski, Frédérique Weber-Lotfi, José M. Gualberto, André Dietrich
Software Mentions: 2
Published: over 5 years ago

10.1155/2019/7314916

A Comparison of Sparse Partial Least Squares and Elastic Net in Wavelength Selection on NIR Spectroscopy Data
Cited by: 5
Author(s): Guang‐Hui Fu, Min-Jie Zong, Fenghua Wang, Lunzhao Yi
Software Mentions: 2
Published: over 5 years ago

10.1186/s12859-020-03606-2

Sparse reduced-rank regression for integrating omics data
Cited by: 2
Author(s): Haileab Hilafu, Sandra E. Safo, Lillian Haine
Software Mentions: 2
Published: over 4 years ago

10.3389/fninf.2014.00018

A variant of sparse partial least squares for variable selection and data exploration
Cited by: 5
Author(s): Megan J. Olson Hunt, Lisa A. Weissfeld, Robert M. Boudreau, Howard J. Aizenstein, Anne B. Newman, Eleanor M. Simonsick, Dane R. Van Domelen, Fridtjof Thomas, Kristine Yaffe, Caterina Rosano
Software Mentions: 1
Published: almost 11 years ago

10.1186/s13104-017-2671-0

Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
Cited by: 9
Author(s): Janine Kamke, Priya Soni, Li V. Yang, Siva Ganesh, William J. Kelly, Sinead C. Leahy, Weibing Shi, Jeff Froula, Edward M. Rubin, Graeme T. Attwood
Software Mentions: 1
Published: over 7 years ago