Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: snap
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/snap
Simple Neural Application
2 versions
Latest release: about 3 years ago
138 downloads last month
Papers Mentioning snap 11
10.1111/1755-0998.13362
Chromosome‐scale assembly of the genome of <i>Salix</i><i>dunnii</i> reveals a male‐heterogametic sex determination system on chromosome 7Cited by: 24
Author(s): Li He, Kai‐Hua Jia, Rengang Zhang, Yuan Wang, Tian-Le Shi, Zhichao Li, Si-Wen Zeng, Xin-Jie Cai, Natascha D. Wagner, Elvira Hörandl, Aline Muyle, Ke Yang, Deborah Charlesworth, Jian‐Feng Mao
Software Mentions: 9
Published: over 3 years ago
10.1038/s42003-020-01637-2
Horseshoe crab genomes reveal the evolution of genes and microRNAs after three rounds of whole genome duplicationCited by: 23
Author(s): Wenyan Nong, Zhe Qu, Yiqian Li, Tom Barton-Owen, Hon Kit Wong, Ho Yin Yip, Hoi Ting Lee, Satya Narayana, Tobias Baril, Thomas Swale, Jianquan Cao, Ting‐Fung Chan, Hoi Shan Kwan, Sai Ming Ngai, Gianni Panagiotou, Pei‐Yuan Qian, Jian Qiu, Kevin Yuk‐Lap Yip, Normaz Wana Ismail, Siddhartha Pati, Akbar John, Stephen S. Tobe, William G. Bendena, Siu Gin Cheung, Alexander Hayward, Jerome H.L. Hui
Software Mentions: 8
Published: over 3 years ago
10.1111/1755-0998.13187
A de novo chromosome‐level genome assembly of<i>Coregonus</i>sp. “<i>Balchen</i>”: One representative of the Swiss Alpine whitefish radiationCited by: 25
Author(s): Rishi De‐Kayne, Stefan Zoller, Philine G. D. Feulner
Software Mentions: 8
Published: over 4 years ago
10.1099/mgen.0.000445
Transcriptome-wide expression profiling of Sporothrix schenckii yeast and mycelial forms and the establishment of the Sporothrix Genome DataBaseCited by: 12
Author(s): Domenico Giosa, Maria Rosa Felice, Letterio Giuffrè, Riccardo Aiese Cigliano, Andreu Paytuví-Gallart, Carla Lo Passo, Cinzia Barresi, Enrico D’Alessandro, Huaiqiu Huang, Giuseppe Criseo, Héctor M. Mora-Montes, Sybren de Hoog, Orazio Romeo
Software Mentions: 7
Published: almost 4 years ago
10.1111/1755-0998.13252
Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird‐of‐paradiseCited by: 84
Author(s): Valentina Peona, Mozes P. K. Blom, Luohao Xu, Reto Burri, Shawn Sullivan, Ignas Bunikis, Ivan Liachko, Tri Haryoko, Knud A. Jønsson, Qi Zhou, Martin Irestedt, Alexander Suh
Software Mentions: 6
Published: almost 4 years ago
10.1186/s13068-021-01975-1
Genomic and transcriptomic analysis of the thermophilic lignocellulose-degrading fungus Thielavia terrestris LPH172Cited by: 14
Author(s): Monika Tõlgo, Silvia Hüttner, Peter Rugbjerg, Nguyễn Thanh Thủy, Vu Nguyen Thanh, Johan Larsbrink, Lisbeth Olsson
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.pgen.1007016
Genomics of parallel adaptation at two timescales in DrosophilaCited by: 20
Author(s): Li Zhao, David J. Begun
Software Mentions: 5
Published: almost 7 years ago
10.1099/mgen.0.000103
Large scale genomic analysis shows no evidence for pathogen adaptation between the blood and cerebrospinal fluid niches during bacterial meningitisCited by: 33
Author(s): John A. Lees, Philip H. C. Kremer, Ana Sousa Manso, Nicholas J. Croucher, Bart Ferwerda, Mercedes Valls Serón, Marco R. Oggioni, Julian Parkhill, Matthijs C. Brouwer, Arie van der Ende, Diederik van de Beek, Stephen D. Bentley
Software Mentions: 4
Published: over 7 years ago
10.1186/s12864-016-2928-3
The genome of the emerging barley pathogen Ramularia collo-cygniCited by: 29
Author(s): Graham R. D. McGrann, Ambrose Andongabo, Elisabet Sjökvist, Urmi Trivedi, Francois Dussart, Maciej Kaczmarek, Ashleigh Mackenzie, J. M. Fountaine, Jeanette Taylor, Lindsay Paterson, K. Gorniak, F. J. Burnett, K. Kanyuka, K. E. Hammond‐Kosack, J. J. Rudd, Mark Blaxter, Neil D. Havis
Software Mentions: 4
Published: about 8 years ago
10.1186/s12864-020-6707-9
A benchmark study of ab initio gene prediction methods in diverse eukaryotic organismsCited by: 39
Author(s): Nicolas Scalzitti, Anne Jeannin-Girardon, Pierre Collet, Olivier Poch, Julie Thompson
Software Mentions: 3
Published: over 4 years ago
10.1111/ppa.12789
Cassava brown streak disease in Rwanda, the associated viruses and disease phenotypesCited by: 21
Author(s): Esperance Munganyinka, Elijah Ateka, A W Kihurani, M.C. Kanyange, Fred Tairo, Peter Sseruwagi, Joseph Ndunguru
Software Mentions: 3
Published: almost 7 years ago