Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: seriation

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/seriation

Infrastructure for Ordering Objects Using Seriation
45 versions
Latest release: over 1 year ago
28 dependent packages
35,064 downloads last month

Papers Mentioning seriation 14

10.1093/bioinformatics/btx657

heatmaply: an R package for creating interactive cluster heatmaps for online publishing
Cited by: 334
Author(s): Tal Galili, Alan O’Callaghan, Jonathan Savage, Carson Sievert
Software Mentions: 14
Published: about 7 years ago

10.18632/oncotarget.6716

Integrative bioinformatic analyses of an oncogenomic profile reveal the biology of endometrial cancer and guide drug discovery
Cited by: 5
Author(s): Henry Sung Ching Wong, Yung‐Shun Juan, Mei-Shin Wu, Yan Feng Zhang, Yi‐Hsiang Hsu, Huang-Hui Chen, Weimin Liu, Wei Chiao Chang
Software Mentions: 13
Published: almost 9 years ago

10.1038/s41598-019-55984-0

Patterns of diverse gene functions in genomic neighborhoods predict gene function and phenotype
Cited by: 16
Author(s): Matej Mihelčić, Tomislav Šmuc, Fran Supek
Software Mentions: 9
Published: almost 5 years ago

10.1186/s12864-018-5092-0

High-throughput proteomic profiling of the fish liver following bacterial infection
Cited by: 58
Author(s): Dwight R. Causey, Moritz A N Pohl, David Stead, Samuel Martín, Christopher J. Secombes, Daniel J. Macqueen
Software Mentions: 9
Published: about 6 years ago

10.1016/j.jprot.2018.08.013

Proteomic comparison of selective breeding and growth hormone transgenesis in fish: Unique pathways to enhanced growth
Cited by: 29
Author(s): Dwight R. Causey, Jin-Hyoung Kim, David Stead, Samuel Martín, Robert H. Devlin, Daniel J. Macqueen
Software Mentions: 7
Published: almost 6 years ago

10.3389/fmicb.2018.02253

A Unique Saccharomyces cerevisiae × Saccharomyces uvarum Hybrid Isolated From Norwegian Farmhouse Beer: Characterization and Reconstruction
Cited by: 38
Author(s): Kristoffer Krogerus, Richard Preiss, Brian Gibson
Software Mentions: 5
Published: about 6 years ago

10.1186/1755-8794-3-21

SEURAT: Visual analytics for the integrated analysis of microarray data
Cited by: 63
Author(s): Alexander Gribov, Martin Sill, Sonja C. Lück, Frank G. Rücker, Konstanze Döhner, Lars Bullinger, Axel Benner, Antony Unwin
Software Mentions: 5
Published: over 14 years ago

10.1186/s12936-020-03474-4

Measuring the contribution of human mobility to malaria persistence
Cited by: 8
Author(s): Maria Auxiliadora de Souza Mendes Gomes, Cláudia Torres Codeço, Leonardo Soares Bastos
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pbio.3000166

Ancient RNA from Late Pleistocene permafrost and historical canids shows tissue-specific transcriptome survival
Cited by: 32
Author(s): Oliver Smith, Glenn Dunshea, Mikkel‐Holger S. Sinding, Sergey Fedorov, Mietje Germonpré, Hervé Bocherens, M. Thomas P. Gilbert
Software Mentions: 4
Published: over 5 years ago

10.3390/molecules26061734

QSAR Models for Active Substances against Pseudomonas aeruginosa Using Disk-Diffusion Test Data
Cited by: 5
Author(s): Cosmin Alexandru Bugeac, Robert Ancuceanu, Mihaela Dinu
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2016.00598

Carbon and Sulfur Cycling below the Chemocline in a Meromictic Lake and the Identification of a Novel Taxonomic Lineage in the FCB Superphylum, Candidatus Aegiribacteria
Cited by: 35
Author(s): Trinity L. Hamilton, Roderick J. Bovee, Sarah R. Sattin, Wiebke Mohr, William P. Gilhooly, Timothy W. Lyons, Ann Pearson, Jennifer L. Macalady
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0230334

Rapid diagnosis of periodontitis, a feasibility study using MALDI-TOF mass spectrometry
Cited by: 15
Author(s): Angéline Antezack, Hervé Chaudet, Hervé Tissot‐Dupont, Philippe Brouqui, Virginie Monnet‐Corti
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0003205

A Seriation Approach for Visualization-Driven Discovery of Co-Expression Patterns in Serial Analysis of Gene Expression (SAGE) Data
Cited by: 1
Author(s): Olena Morozova, Vyacheslav Morozov, Brad G. Hoffman, Cheryl D. Helgason, Marco A. Marra
Software Mentions: 2
Published: about 16 years ago

10.1371/journal.pone.0022546

Reordering Hierarchical Tree Based on Bilateral Symmetric Distance
Cited by: 3
Author(s): Minho Chae, James J. Chen
Software Mentions: 1
Published: over 13 years ago