Projects: cran: sequenza
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/sequenza
Copy Number Estimation from Tumor Genome Sequencing Data
10 versions
Latest release: about 7 years ago
410 downloads last month
Science Score: 85/100
Starting Score: 100 points
Bonuses:
Penalties:
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-15
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Very Likely Science (85)
Papers Mentioning sequenza 4
10.1038/s41598-020-64929-x
Single-cell analysis of childhood leukemia reveals a link between developmental states and ribosomal protein expression as a source of intra-individual heterogeneityCited by: 29
Author(s): Maxime Caron, Pascal St-Onge, Thomas Sontag, Yu Chang Wang, Chantal Richer, Jiannis Ragoussis, Daniel Sinnett, Guillaume Bourque
Software Mentions: 6
Published: about 6 years ago
10.1136/gutjnl-2015-310748
Evolution of oesophageal adenocarcinoma from metaplastic columnar epithelium without goblet cells in Barrett's oesophagusCited by: 34
Author(s): Danielle L. Lavery, Pierre Martinez, Biancastella Cereser, Marco Novelli, Manuel Rodriguez–Justo, Sybren L. Meijer, Trevor A. Graham, Stuart McDonald, Nicholas A. Wright, Marnix Jansen
Software Mentions: 2
Published: over 10 years ago
10.3390/jcm8122077
Simultaneous Monitoring of Mutation and Chimerism Using Next-Generation Sequencing in Myelodysplastic SyndromeCited by: 20
Author(s): Jong-Mi Lee, Yoo-Jin Kim, Sung Soo Park, Eunhee Han, Myungshin Kim, Yonggoo Kim
Software Mentions: 2
Published: over 6 years ago
10.1186/s12920-017-0296-8
A method to reduce ancestry related germline false positives in tumor only somatic variant callingCited by: 26
Author(s): Rebecca F. Halperin, John D. Carpten, Zarko Manojlovic, Jessica Aldrich, Jonathan J. Keats, Sara A. Byron, Winnie S. Liang, Megan Russell, Daniel Enríquez, Ana M. Claasen, Irene Cherni, Baffour Awuah, Joseph K. Oppong, Max S. Wicha, Lisa A. Newman, Evelyn Jaigge, Kim S, David W. Craig
Software Mentions: 1
Published: over 8 years ago