Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: sequenza

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/sequenza

Copy Number Estimation from Tumor Genome Sequencing Data
10 versions
Latest release: over 5 years ago
410 downloads last month

Papers Mentioning sequenza 4

Single-cell analysis of childhood leukemia reveals a link between developmental states and ribosomal protein expression as a source of intra-individual heterogeneity
Cited by: 29
Author(s): Maxime Caron, Pascal St-Onge, Thomas Sontag, Yu Chang Wang, Chantal Richer, Jiannis Ragoussis, Daniel Sinnett, Guillaume Bourque
Software Mentions: 6
Published: over 4 years ago

10.1136/gutjnl-2015-310748

Evolution of oesophageal adenocarcinoma from metaplastic columnar epithelium without goblet cells in Barrett's oesophagus
Cited by: 34
Author(s): Danielle L. Lavery, Pierre Martinez, Biancastella Cereser, Marco Novelli, Manuel Rodriguez–Justo, Sybren L. Meijer, Trevor A. Graham, Stuart McDonald, Nicholas A. Wright, Marnix Jansen
Software Mentions: 2
Published: over 8 years ago

10.3390/jcm8122077

Simultaneous Monitoring of Mutation and Chimerism Using Next-Generation Sequencing in Myelodysplastic Syndrome
Cited by: 20
Author(s): Jong-Mi Lee, Yoo-Jin Kim, Sung Soo Park, Eunhee Han, Myungshin Kim, Yonggoo Kim
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12920-017-0296-8

A method to reduce ancestry related germline false positives in tumor only somatic variant calling
Cited by: 26
Author(s): Rebecca F. Halperin, John D. Carpten, Zarko Manojlovic, Jessica Aldrich, Jonathan J. Keats, Sara A. Byron, Winnie S. Liang, Megan Russell, Daniel Enríquez, Ana M. Claasen, Irene Cherni, Baffour Awuah, Joseph K. Oppong, Max S. Wicha, Lisa A. Newman, Evelyn Jaigge, Kim S, David W. Craig
Software Mentions: 1
Published: almost 7 years ago