Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: seqinr

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/seqinr

Biological Sequences Retrieval and Analysis
24 versions
Latest release: over 1 year ago
67 dependent packages
15,640 downloads last month

Papers Mentioning seqinr 110

Sensitive universal detection of blood parasites by selective pathogen-DNA enrichment and deep amplicon sequencing
Cited by: 40
Author(s): Briana R. Flaherty, Joel Barratt, Meredith Lane, Eldin Talundzic, Richard S. Bradbury
Software Mentions: 1
Published: almost 4 years ago

10.1186/1471-2164-15-882

An evolutionary analysis of genome expansion and pathogenicity in Escherichia coli
Cited by: 20
Author(s): Jon Bohlin, Ola Brønstad Brynildsrud, Camilla Sekse, Lars Snipen
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12864-016-2491-y

Comparative genome analysis and genome evolution of members of the magnaporthaceae family of fungi
Cited by: 21
Author(s): Laura H. Okagaki, Joshua Sailsbery, Alexander W. Eyre, Ralph A. Dean
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-015-1863-z

Draft genome of a commonly misdiagnosed multidrug resistant pathogen Candida auris
Cited by: 176
Author(s): Sharanya Chatterjee, Shuba Varshini Alampalli, Rishi Kumar Nageshan, Sivarajan T. Chettiar, Sangeeta Joshi, Utpal Tatu
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-018-23963-6

Small molecule detection with aptamer based lateral flow assays: Applying aptamer-C-reactive protein cross-recognition for ampicillin detection
Cited by: 44
Author(s): Lars Kaiser, Julia Weisser, Matthias Kohl, Hans‐Peter Deigner
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-015-1763-2

Evolutionary patchwork of an insecticidal toxin shared between plant-associated pseudomonads and the insect pathogens Photorhabdus and Xenorhabdus
Cited by: 44
Author(s): Beat Ruffner, Maria Péchy-Tarr, Monica Höfte, Guido V. Bloemberg, Juerg Grunder, Christoph Keel, M. Maurhofer
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-016-3443-2

The Zygosaccharomyces bailii transcription factor Haa1 is required for acetic acid and copper stress responses suggesting subfunctionalization of the ancestral bifunctional protein Haa1/Cup2
Cited by: 26
Author(s): Margarida Palma, Paulo Jorge Varela Lopes Dias, Filipa de Canaveira Roque, Laura Luzia, Joana F. Guerreiro, Isabel Sá‐Correia
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-020-62675-8

Comparative analyses of error handling strategies for next-generation sequencing in precision medicine
Cited by: 3
Author(s): Hannah F Löchel, Dominik Heider
Software Mentions: 1
Published: over 4 years ago

10.1007/s10682-020-10039-z

CpG-creating mutations are costly in many human viruses
Cited by: 14
Author(s): Victoria Caudill, Sarina Qin, Ryan Winstead, Jasmeen Kaur, Kaho H. Tisthammer, E. Geo Pineda, Caroline Solis, Sarah Cobey, Trevor Bedford, Oana Carja, Rosalind M Eggo, Katia Koelle, Katrina A. Lythgoe, Roland R. Regoes, Scott William Roy, Nicole Allen, Milo Aviles, Brittany A. Baker, William R. Bauer, Shannel Bermudez, Corey M. Carlson, Edgar Castellanos, Francisca Catalan, Angeline Katia Chemel, Jacob Elliot, Dwayne Evans, Natalie Fiutek, Emily Fryer, Samuel M Goodfellow, Mordecai Hecht, Kellen Hopp, E. Deshawn Hopson, Amirhossein Jaberi, Christen Kinney, Derek Lao, Adrienne Le, Jacky Lo, Alejandro G. Lopez, Andrea López, Fernando G. Lorenzo, Gordon T Luu, Andrew R. Mahoney, Rebecca Melton, Gabriela Do Nascimento, Anjani Pradhananga, Nicole S. Rodrigues, Annie W. Shieh, Jasmine Sims, Rima Singh, Hasan Sulaeman, Ricky Thu, Khanh Van Tran, Livia Tran, Elizabeth J. Winters, Albert H.C. Wong, Pleuni S. Pennings
Software Mentions: 1
Published: over 4 years ago

10.1186/s13578-021-00673-7

Genetic composition and evolution of the prevalent Mycobacterium tuberculosis lineages 2 and 4 in the Chinese and Zhejiang Province populations
Cited by: 3
Author(s): Biao Wu, Wenlong Zhu, Yue Wang, Qi Wang, Lin Zhou, Zhengwei Liu, Lijun Bi, Barun Mathema, Barry N Kreiswirth, Chen Liang, Songhua Chen, Xiaomeng Wang, Weibing Wang
Software Mentions: 1
Published: over 3 years ago