Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: seg

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/seg

Measuring Spatial Segregation
11 versions
Latest release: almost 5 years ago
1 dependent package
324 downloads last month

Papers Mentioning seg 20

Proteomic analysis of streptomycin resistant and sensitive clinical isolates of Mycobacterium tuberculosis
Cited by: 45
Author(s): Prashant Sharma, Bhavnesh Kumar, Yash Gupta, Neelja Singhal, Vishwa Mohan Katoch, K Venkatesan, Deepa Bisht
Software Mentions: 7
Published: almost 14 years ago

10.1186/s13073-019-0657-3

A validated single-cell-based strategy to identify diagnostic and therapeutic targets in complex diseases
Cited by: 67
Author(s): Danuta R. Gawel, Jordi Serra-Musach, Sandra Lilja, Jesper Aagesen, Àlex Arenas, B. Asking, Malin Bengnér, Janne Björkander, Sophie Biggs, Jan Ernerudh, Henrik Hjortswang, Jan‐Erik Karlsson, Mattias Köpsén, Eun Jung Lee, Antonio Lentini, Xinxiu Li, Mattias Magnusson, David Martínez-Enguita, Andreas Matussek, Colm E. Nestor, Samuel Schäfer, Oliver Seifert, Ceylan Sonmez, Henrik Stjernman, Andreas Tjärnberg, Simon Wu, Karin Åkesson, Alexander K Shalek, Margaretha Stenmarker, Huan Zhang, Mika Gustafsson, Mikael Benson
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0009327

The Porcelain Crab Transcriptome and PCAD, the Porcelain Crab Microarray and Sequence Database
Cited by: 21
Author(s): Abderrahmane Tagmount, Mei Wang, Erika Lindquist, Yoshihiro Tanaka, Kristen S. Teranishi, Shinichi Sunagawa, Mike Wong, Jonathon H. Stillman
Software Mentions: 7
Published: over 14 years ago

10.1371/journal.pone.0113767

Implementing Spatial Segregation Measures in R
Cited by: 26
Author(s): Sung-Jin Hong, David O’Sullivan, Yukio Sadahiro
Software Mentions: 6
Published: almost 10 years ago

10.1186/1471-2164-8-191

C-terminal motif prediction in eukaryotic proteomes using comparative genomics and statistical over-representation across protein families
Cited by: 15
Author(s): Ryan E Austin, Nicholas J. Provart, Sean R. Cutler
Software Mentions: 5
Published: about 17 years ago

10.1186/1471-2105-7-264

Spatial normalization of array-CGH data
Cited by: 76
Author(s): Pierre Neuvial, Philippe Hupé, Isabel Martínez Brito, Stéphane Liva, Élodie Manié, Caroline Brennetot, François Radvanyi, Alain Aurias, Emmanuel Barillot
Software Mentions: 4
Published: over 18 years ago

10.1186/1471-2164-13-261

The immune gene repertoire of an important viral reservoir, the Australian black flying fox
Cited by: 98
Author(s): Anthony T. Papenfuss, Michelle L. Baker, Zhiping Feng, Mary Tachedjian, Gary Crameri, Christopher Cowled, Justin H. J. Ng, Vijaya Janardhana, Hume Field, Lin‐Fa Wang
Software Mentions: 3
Published: over 12 years ago

10.1186/1471-2105-10-421

BLAST+: architecture and applications
Cited by: 12,922
Author(s): Christiam Camacho, George Coulouris, Vahram Avagyan, Ning Ma, Jason S. Papadopoulos, Kevin Bealer, Thomas Madden
Software Mentions: 2
Published: almost 15 years ago

10.1186/1471-2164-13-673

A catalogue of putative unique transcripts from Douglas-fir (Pseudotsuga menziesii) based on 454 transcriptome sequencing of genetically diverse, drought stressed seedlings
Cited by: 31
Author(s): Thomas Müller, Ingo Ensminger, Karl Schmid
Software Mentions: 2
Published: almost 12 years ago

10.1186/1472-6807-6-7

Structural proteomics of minimal organisms: Conservation of protein fold usage and evolutionary implications
Cited by: 10
Author(s): John-Marc Chandonia, Sung‐Hou Kim
Software Mentions: 2
Published: over 18 years ago

10.1093/bioinformatics/btv524

RNF: a general framework to evaluate NGS read mappers
Cited by: 8
Author(s): Karel Břinda, Valentina Boeva, Grégory Kucherov
Software Mentions: 2
Published: about 9 years ago

10.1186/s12967-021-02992-2

Self-supervised deep learning model for COVID-19 lung CT image segmentation highlighting putative causal relationship among age, underlying disease and COVID-19
Cited by: 60
Author(s): Daryl L. X. Fung, Qian Liu, Judah Zammit, Carson K. Leung, Pingzhao Hu
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pone.0000324

Large-Scale Comparative Genomic Ranking of Taxonomically Restricted Genes (TRGs) in Bacterial and Archaeal Genomes
Cited by: 30
Author(s): Gareth A. Wilson, Edward J. Feil, Andrew K. Lilley, Dawn Field
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pcbi.0030033

The (In)dependence of Alternative Splicing and Gene Duplication
Cited by: 69
Author(s): David Talavera, Christine Vogel, Modesto Orozco, Sarah A. Teichmann, Xavier de la Cruz
Software Mentions: 1
Published: over 17 years ago

10.1155/2019/5856970

Trichomonas Detection in Leucorrhea Based on VIBE Method
Cited by: 2
Author(s): Xiaohui Du, Lin Liu, Xiangzhou Wang, Jing Zhang, Guangming Ni, Ruqian Hao, Juanxiu Liu, Yong Liu
Software Mentions: 1
Published: over 5 years ago

10.1186/1475-925X-10-71

Analysis of coronary angiography related psychophysiological responses
Cited by: 6
Author(s): Şükrü Okkesim, Sadık Kara, Mehmet Kaya, Musa Hakan Asyalı
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2164-15-S1-S2

Proposing a highly accurate protein structural class predictor using segmentation-based features
Cited by: 32
Author(s): Abdollah Dehzangi, Kuldip K. Paliwal, James Lyons, Alok Sharma, Abdul Sattar
Software Mentions: 1
Published: over 10 years ago

10.1038/srep25264

Somatic genomic alterations in retinoblastoma beyond RB1 are rare and limited to copy number changes
Cited by: 71
Author(s): Irsan Kooi, Berber M. Mol, Maarten P.G. Massink, Najim Ameziane, Hanne Meijers-Heijboer, Charlotte J. Dommering, Saskia E. van Mil, Yne de Vries, Annemarie H. van der Hout, Gertjan J. L. Kaspers, Annette C. Moll, Hein te Riele, Jacqueline Cloos, Josephine C. Dorsman
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-020-79559-6

Signatures of conserved and unique molecular features in Afrotheria
Cited by: 2
Author(s): Arangasamy Yazhini, Narayanaswamy Srinivasan
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pgen.1009315

RAFFI: Accurate and fast familial relationship inference in large scale biobank studies using RaPID
Cited by: 4
Author(s): Ardalan Naseri, Junjie Shi, Xihong Lin, Shaojie Zhang, Degui Zhi
Software Mentions: 1
Published: over 3 years ago